Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ILF3	3609	hgsc.bcm.edu	36	19	10653682	10653683	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153464	exon12	c.1194_1195insC	p.E398fs	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
SIRPG	55423	hgsc.bcm.edu	36	20	1577815	1577815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001039508	exon2	c.C313T	p.R105C	.	.	.
LGMN	5641	hgsc.bcm.edu	36	14	92242582	92242582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001008530	exon13	c.C1190T	p.T397M	.	.	.
CD22	933	hgsc.bcm.edu	36	19	40527596	40527596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001185100	exon10	c.G2060A	p.R687Q	.	.	.
ZNF585A	199704	hgsc.bcm.edu	36	19	42335270	42335270	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199126	exon6	c.A1206C	p.K402N	.	.	.
ZNF585A	199704	hgsc.bcm.edu	36	19	42335272	42335272	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_199126	exon6	c.A1204T	p.K402X	.	.	.
MYBPHL	343263	hgsc.bcm.edu	36	1	109640483	109640483	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001010985	exon6	c.C763T	p.R255X	.	.	.
SNIP1	79753	hgsc.bcm.edu	36	1	37778841	37778841	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024700	exon3	c.C430T	p.R144W	.	.	.
LUZP2	338645	hgsc.bcm.edu	36	11	24954737	24954737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001009909	exon8	c.C547A	p.Q183K	.	.	.
G6PC	2538	hgsc.bcm.edu	36	17	38316523	38316523	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000151	exon5	c.T628G	p.F210V	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.
KRTAP19-5	337972	hgsc.bcm.edu	36	21	30796141	30796141	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181611	exon1	c.G139A	p.G47S	.	.	.
SENP7	57337	hgsc.bcm.edu	36	3	102549470	102549470	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020654	exon13	c.G1773A	p.W591X	.	.	.
TRAT1	50852	hgsc.bcm.edu	36	3	110055333	110055333	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016388	exon6	c.C480A	p.S160R	.	.	.
DAO	1610	hgsc.bcm.edu	36	12	107812255	107812255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001917	exon7	c.C595T	p.R199W	.	.	.
SOX5	6660	hgsc.bcm.edu	36	12	23890194	23890194	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152989	exon6	c.C432T	p.N144N	.	.	.
LRRK2	120892	hgsc.bcm.edu	36	12	38989214	38989214	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198578	exon30	c.C4229T	p.T1410M	.	.	.
EEA1	8411	hgsc.bcm.edu	36	12	91726998	91726998	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003566	exon18	c.G2265C	p.Q755H	.	.	.
ALPK1	80216	hgsc.bcm.edu	36	4	113523046	113523046	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025144	exon4	c.G165A	p.K55K	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135309766	135309766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153834	exon21	c.G8400T	p.L2800F	.	.	.
FAM47B	170062	hgsc.bcm.edu	36	X	34871709	34871709	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152631	exon1	c.G840A	p.A280A	.	.	.
UPRT	139596	hgsc.bcm.edu	36	X	74410972	74410972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145052	exon1	c.C158T	p.T53M	.	.	.
RNF149	284996	hgsc.bcm.edu	36	2	101264878	101264878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173647	exon6	c.G1034A	p.S345N	.	.	.
SLC19A3	80704	hgsc.bcm.edu	36	2	228260514	228260514	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025243	exon6	c.A1334G	p.Y445C	.	.	.
SLC24A2	25769	hgsc.bcm.edu	36	9	19776158	19776158	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020344	exon2	c.G707T	p.W236L	.	.	.
PCDH20	64881	hgsc.bcm.edu	36	13	60884224	60884224	+	Missense_Mutation	SNP	C	C	A	rs61749965	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022843	exon2	c.G2009T	p.R670L	.	.	.
TRPC4	7223	hgsc.bcm.edu	36	13	37109755	37109755	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135956	exon10	c.A2024G	p.K675R	.	.	.
FLT4	2324	hgsc.bcm.edu	36	5	179969545	179969545	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182925	exon28	c.T3773A	p.F1258Y	.	.	.
