Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_tumor_sample							
FAM132A	388581	broad.mit.edu	37	1	1179861	1179861	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:1179861C>T	uc001adl.1	-	2	226	c.194G>A	c.(193-195)GGA>GAA	p.G65E		NM_001014980	NP_001014980	Q5T7M4	F132A_HUMAN	family with sequence similarity 132, member A	65						extracellular region					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.22e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GAACTCAGGTCCTGAGGCCTG	0.672		NaN											0	0	0	0.008871	0	16	81									
KIAA0495	57212	broad.mit.edu	37	1	3662532	3662532	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:3662532G>A	uc009vlm.2	-	1	1355	c.236C>T	c.(235-237)TCT>TTT	p.S79F	KIAA0495_uc001akt.3_RNA	NM_207306	NP_997189			hypothetical protein LOC57212 precursor												0	all_cancers(77;0.0338)|Ovarian(185;0.0634)|Lung NSC(156;0.172)|all_lung(157;0.182)	all_epithelial(116;1.83e-21)|all_lung(118;2e-08)|Lung NSC(185;7.5e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;1.27e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.43e-22)|GBM - Glioblastoma multiforme(42;3.69e-16)|Colorectal(212;1.21e-05)|COAD - Colon adenocarcinoma(227;5.87e-05)|Kidney(185;0.000367)|BRCA - Breast invasive adenocarcinoma(365;0.000704)|KIRC - Kidney renal clear cell carcinoma(229;0.00567)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.204)		GGTGGAGGCAGATGGTGTTGC	0.592		NaN											0	0	0	0.00361	0	40	190									
DFFA	1676	broad.mit.edu	37	1	10523212	10523212	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:10523212C>G	uc001arj.2	-	5	784	c.686G>C	c.(685-687)AGA>ACA	p.R229T	DFFA_uc001ark.2_Missense_Mutation_p.R229T	NM_004401	NP_004392	O00273	DFFA_HUMAN	DNA fragmentation factor, 45kDa, alpha	229					DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction|negative regulation of apoptosis	cytosol|mitochondrion|nucleoplasm|plasma membrane	deoxyribonuclease activity|identical protein binding				0	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.25e-07)|COAD - Colon adenocarcinoma(227;7.25e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000296)|Kidney(185;0.00074)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0487)		GGAGGTCTCTCTGCTGATACC	0.557		NaN											0	0	0	0.008291	0	9	66									
MFN2	9927	broad.mit.edu	37	1	12061571	12061571	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:12061571C>G	uc001atn.3	+	9	1383	c.930C>G	c.(928-930)CTC>CTG	p.L310L	MFN2_uc009vni.2_Silent_p.L310L	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	310	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		AGGAGGTGCTCAACGCCAGGA	0.532		NaN									OREG0013107	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.004482	0	7	30									
TNFRSF8	943	broad.mit.edu	37	1	12175755	12175755	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:12175755C>G	uc001atq.2	+	8	1137	c.915C>G	c.(913-915)ATC>ATG	p.I305M	TNFRSF8_uc010obc.1_Missense_Mutation_p.I194M	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	305	Extracellular (Potential).|TNFR-Cys 6.				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CCTACCCAATCTGTGCAGCAG	0.627		NaN											0	0	0	0.004482	0	9	65									
VPS13D	55187	broad.mit.edu	37	1	12322040	12322040	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:12322040G>A	uc001atv.2	+	13	1638	c.1497G>A	c.(1495-1497)CTG>CTA	p.L499L	VPS13D_uc001atw.2_Silent_p.L499L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	499					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TTGCCAAACTGAATTTGCAGT	0.448		NaN											0	0	0	0.006122	0	14	87									
VPS13D	55187	broad.mit.edu	37	1	12339681	12339681	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:12339681G>A	uc001atv.2	+	20	4717	c.4576G>A	c.(4576-4578)GAA>AAA	p.E1526K	VPS13D_uc001atw.2_Missense_Mutation_p.E1526K|VPS13D_uc001atx.2_Missense_Mutation_p.E714K	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1526					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CATGAAGATTGAAGGAAAATT	0.333		NaN											0	0	0	0.008291	0	8	45									
KAZ	23254	broad.mit.edu	37	1	14925613	14925613	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:14925613G>C	uc001avm.3	+	1	401	c.120G>C	c.(118-120)CTG>CTC	p.L40L	KAZ_uc009vog.1_Silent_p.L40L|KAZ_uc010obj.1_Silent_p.L40L	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	40					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						TGGCGGAACTGAgcggcggcg	0.468		NaN											0	0	0	0.001168	0	6	43									
RSC1A1	6248	broad.mit.edu	37	1	15986462	15986462	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:15986462C>G	uc010obn.1	+	1	99	c.99C>G	c.(97-99)GTC>GTG	p.V33V	DDI2_uc001awx.1_3'UTR|DDI2_uc009voj.1_3'UTR	NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	33					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTCGCTCTGTCTCTGCTTCAG	0.478		NaN											0	0	0	0.009718	0	33	183									
RSC1A1	6248	broad.mit.edu	37	1	15986581	15986581	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:15986581C>A	uc010obn.1	+	1	218	c.218C>A	c.(217-219)TCT>TAT	p.S73Y	DDI2_uc001awx.1_3'UTR|DDI2_uc009voj.1_3'UTR	NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	73					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAACATCTTTCTTTACAAGAT	0.428		NaN											1	0	9.31168e-06	0.001855	9.66208e-06	11	52									
RSC1A1	6248	broad.mit.edu	37	1	15987253	15987253	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:15987253C>A	uc010obn.1	+	1	890	c.890C>A	c.(889-891)TCA>TAA	p.S297*		NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	297					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGTAACCCTTCATCTGAAATT	0.383		NaN											1	0	0.000157383	0.00308	0.000161752	6	44									
RSC1A1	6248	broad.mit.edu	37	1	15987441	15987441	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:15987441C>T	uc010obn.1	+	1	1078	c.1078C>T	c.(1078-1080)CAT>TAT	p.H360Y		NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	360					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAAAGAACTTCATGAACTTTT	0.438		NaN											0	0	0	0.008291	0	7	25									
PLEKHM2	23207	broad.mit.edu	37	1	16053943	16053943	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:16053943C>T	uc010obo.1	+	9	1603	c.1376C>T	c.(1375-1377)TCA>TTA	p.S459L		NM_015164	NP_055979	Q8IWE5	PKHM2_HUMAN	pleckstrin homology domain containing, family M	459					Golgi organization	cytoplasm	kinesin binding			ovary(1)	1		Colorectal(325;0.000259)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00057)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GAGGGGCTTTCAGCCCCAATG	0.632		NaN											0	0	0	0.001168	0	4	6									
HTR6	3362	broad.mit.edu	37	1	20005075	20005075	+	Missense_Mutation	SNP	C	C	A	rs61751019		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:20005075C>A	uc001bcl.2	+	2	1197	c.730C>A	c.(730-732)CGC>AGC	p.R244S		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	244	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	CAGGACCCCACGCCCAGGGGT	0.532		NaN											1	0	6.21321e-17	0.00278	6.68243e-17	17	126									
CDA	978	broad.mit.edu	37	1	20944968	20944968	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:20944968C>T	uc001bdk.2	+	4	527	c.348C>T	c.(346-348)TAC>TAT	p.Y116Y	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_RNA	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	116					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	GGCCCGTGTACATGACCAAGC	0.373		NaN											0	0	0	0.004482	0	5	37									
USP48	84196	broad.mit.edu	37	1	22074665	22074665	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:22074665G>C	uc001bfb.2	-	7	1112	c.874C>G	c.(874-876)CTG>GTG	p.L292V	USP48_uc010odq.1_Missense_Mutation_p.L292V|USP48_uc009vqc.2_Missense_Mutation_p.L292V|USP48_uc001bfc.2_Missense_Mutation_p.L292V|USP48_uc001bfe.1_Missense_Mutation_p.L292V|USP48_uc001bff.2_Missense_Mutation_p.L292V	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	292					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TGCAAGTTCAGAGTGCAAGGA	0.378		NaN											0	0	0	0.001368	0	9	60									
TCEB3	6924	broad.mit.edu	37	1	24077712	24077712	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:24077712C>T	uc001bho.2	+	4	755	c.695C>T	c.(694-696)TCA>TTA	p.S232L		NM_003198	NP_003189	Q14241	ELOA1_HUMAN	elongin A	232					positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|viral reproduction	integral to membrane	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.42e-24)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;4.74e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|KIRC - Kidney renal clear cell carcinoma(1967;0.00334)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		CCCATTGTTTCACACCAGAAG	0.552		NaN									OREG0013232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.006214	0	9	93									
TCEB3	6924	broad.mit.edu	37	1	24078045	24078045	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:24078045C>G	uc001bho.2	+	4	1088	c.1028C>G	c.(1027-1029)TCA>TGA	p.S343*		NM_003198	NP_003189	Q14241	ELOA1_HUMAN	elongin A	343					positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|viral reproduction	integral to membrane	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.42e-24)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;4.74e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|KIRC - Kidney renal clear cell carcinoma(1967;0.00334)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		TTGCCTCCCTCAGAGGCCGCT	0.522		NaN									OREG0013232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.001984	0	6	40									
GPN2	54707	broad.mit.edu	37	1	27216180	27216180	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:27216180G>A	uc001bnd.1	-	1	690	c.408C>T	c.(406-408)CTC>CTT	p.L136L		NM_018066	NP_060536	Q9H9Y4	GPN2_HUMAN	ATP binding domain 1 family, member B	136							GTP binding				0						GACGCACCCTGAGGTCCCACT	0.413		NaN											0	0	0	0.005443	0	23	164									
FGR	2268	broad.mit.edu	37	1	27950379	27950379	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:27950379C>A	uc001boj.2	-	1	195	c.49G>T	c.(49-51)GAG>TAG	p.E17*	FGR_uc001bok.2_Nonsense_Mutation_p.E17*|FGR_uc001bol.2_Nonsense_Mutation_p.E17*|FGR_uc001bom.2_Nonsense_Mutation_p.E17*	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	17					platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CCAGCATCCTCCTTGGCCGTG	0.602		NaN											1	0	0.000308642	0.003163	0.000316957	13	72									
XKR8	55113	broad.mit.edu	37	1	28290051	28290051	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:28290051G>C	uc001bph.1	+	2	414	c.337G>C	c.(337-339)GAG>CAG	p.E113Q		NM_018053	NP_060523	Q9H6D3	XKR8_HUMAN	XK, Kell blood group complex subunit-related	113						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00588)|all_lung(284;0.00645)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;4.72e-24)|Colorectal(126;1.52e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00572)|READ - Rectum adenocarcinoma(331;0.0526)		GTGGCAGCAGGAGGAGCCCTC	0.612		NaN											0	0	0	0.00499	0	15	103									
EYA3	2140	broad.mit.edu	37	1	28365386	28365386	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:28365386G>T	uc001bpi.1	-	5	353	c.188C>A	c.(187-189)TCA>TAA	p.S63*	EYA3_uc010ofs.1_Nonsense_Mutation_p.S10*|EYA3_uc010oft.1_Nonsense_Mutation_p.S63*|EYA3_uc001bpj.2_Nonsense_Mutation_p.S63*|EYA3_uc001bpk.1_RNA|EYA3_uc010ofu.1_RNA	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	63					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		ATCATTGGATGAGCGAGGGAT	0.318		NaN											1	0	9.31168e-06	0.001855	9.66208e-06	8	76									
GMEB1	10691	broad.mit.edu	37	1	29030720	29030720	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:29030720C>T	uc001bra.2	+	8	915	c.777C>T	c.(775-777)TTC>TTT	p.F259F	GMEB1_uc001bqz.2_Silent_p.F249F|GMEB1_uc001brb.2_Silent_p.F249F	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	259					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		CTTTGATGTTCTGGAAAGGAA	0.433		NaN											0	0	0	0.001168	0	6	109									
KHDRBS1	10657	broad.mit.edu	37	1	32502561	32502561	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:32502561G>C	uc001bub.2	+	5	928	c.822G>C	c.(820-822)TTG>TTC	p.L274F	KHDRBS1_uc001bua.1_Missense_Mutation_p.L235F|KHDRBS1_uc001buc.1_RNA	NM_006559	NP_006550	Q07666	KHDR1_HUMAN	KH domain containing, RNA binding, signal	274					cell cycle arrest|cell proliferation|cell surface receptor linked signaling pathway|G2/M transition of mitotic cell cycle|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of RNA export from nucleus|transcription, DNA-dependent	membrane|nucleus	DNA binding|RNA binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TGTCCTACTTGAATGGAGTAC	0.493		NaN											0	0	0	0.00333	0	22	150									
TRIM62	55223	broad.mit.edu	37	1	33613176	33613176	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:33613176C>A	uc001bxb.2	-	5	1668	c.1030G>T	c.(1030-1032)GAA>TAA	p.E344*		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	344	B30.2/SPRY.					intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				CTGAAGGCTTCAGAACCCAGC	0.622		NaN											1	0	0.00829132	0.008291	0.00844776	7	81									
KIAA0319L	79932	broad.mit.edu	37	1	35916018	35916018	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:35916018C>T	uc001byx.2	-	14	2413	c.2155G>A	c.(2155-2157)GAT>AAT	p.D719N	KIAA0319L_uc001byw.2_Missense_Mutation_p.D161N|KIAA0319L_uc010ohv.1_Missense_Mutation_p.D361N	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	719	PKD 5.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCCTTGTCATCTGAGGACTTA	0.512		NaN											0	0	0	0.001855	0	13	116									
COL8A2	1296	broad.mit.edu	37	1	36564281	36564281	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:36564281C>G	uc001bzv.1	-	2	1008	c.1001G>C	c.(1000-1002)GGA>GCA	p.G334A	COL8A2_uc001bzw.1_Missense_Mutation_p.G269A	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	334	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCCCAAGAGTCCTGGGACCCC	0.721		NaN											0	0	0	0.001168	0	4	40									
COL8A2	1296	broad.mit.edu	37	1	36564306	36564306	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:36564306C>G	uc001bzv.1	-	2	983	c.976G>C	c.(976-978)GAC>CAC	p.D326H	COL8A2_uc001bzw.1_Missense_Mutation_p.D261H	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	326	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGGCCCCTGTCCCCCTTGGGG	0.726		NaN											0	0	0	0.000602	0	3	32									
CSF3R	1441	broad.mit.edu	37	1	36939118	36939118	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:36939118C>G	uc001caw.1	-	6	769	c.591G>C	c.(589-591)CAG>CAC	p.Q197H	CSF3R_uc009vvc.1_5'Flank|CSF3R_uc001cau.1_5'Flank|CSF3R_uc001cav.1_Missense_Mutation_p.Q197H|CSF3R_uc001cax.1_Missense_Mutation_p.Q197H|CSF3R_uc001cay.1_Missense_Mutation_p.Q197H	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	197	Fibronectin type-III 1.|Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TGCCCATATTCTGGTACAACA	0.597		NaN											0	0	0	0.008361	0	30	164									
GRIK3	2899	broad.mit.edu	37	1	37271815	37271815	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:37271815G>A	uc001caz.2	-	14	2339	c.2204C>T	c.(2203-2205)GCG>GTG	p.A735V	GRIK3_uc001cba.1_Missense_Mutation_p.A735V	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	735	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CATGAGCAGCGCGTAGTCGGC	0.612		NaN											0	0	0	0.008871	0	16	170									
GNL2	29889	broad.mit.edu	37	1	38041280	38041280	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:38041280C>T	uc001cbk.2	-	10	1222	c.1059G>A	c.(1057-1059)TTG>TTA	p.L353L		NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	353	G.				ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				TCCGACGCATCAAAGTAATAT	0.438		NaN											0	0	0	0.001855	0	10	67									
SF3A3	10946	broad.mit.edu	37	1	38446330	38446330	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:38446330C>G	uc001cci.2	-	8	742	c.618G>C	c.(616-618)CAG>CAC	p.Q206H	SF3A3_uc010oik.1_Missense_Mutation_p.Q153H	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	206					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AAAGTTCATTCTGATCTTGGA	0.458		NaN											0	0	0	0.006214	0	7	77									
POU3F1	5453	broad.mit.edu	37	1	38511339	38511339	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:38511339G>C	uc001ccp.1	-	1	1112	c.1077C>G	c.(1075-1077)CTC>CTG	p.L359L		NM_002699	NP_002690	Q03052	PO3F1_HUMAN	POU domain, class 3, transcription factor 1	359	Homeobox.				positive regulation of transcription, DNA-dependent		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TGGGGCACTTGAGAAAGTGGC	0.662		NaN											0	0	0	0.008291	0	8	37									
KIAA0754	643314	broad.mit.edu	37	1	39876717	39876717	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:39876717G>A	uc009vvt.1	+	1	1542	c.780G>A	c.(778-780)CCG>CCA	p.P260P	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	124											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CAACCTGGCCGAGGGCCACAA	0.522		NaN									OREG0013393	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.004672	0	3	17									
ZNF642	339559	broad.mit.edu	37	1	40945004	40945004	+	Splice_Site	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:40945004G>C	uc001cfo.2	+	2	266	c.-28_splice	c.e2-1		ZNF642_uc009vwb.2_5'UTR|ZNF642_uc010ojk.1_Splice_Site	NM_198494	NP_940896	Q49AA0	ZN642_HUMAN	zinc finger protein 642						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.81e-19)			TTCCTCACCAGAAGTGGACAA	0.547		NaN											0	0	0	0.009718	0	32	162									
ZNF684	127396	broad.mit.edu	37	1	41012608	41012608	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:41012608C>T	uc001cft.1	+	5	864	c.613C>T	c.(613-615)CAT>TAT	p.H205Y		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	205	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			CCTTGCAACTCATCAGAAAAT	0.408		NaN											0	0	0	0.004482	0	8	65									
WDR65	149465	broad.mit.edu	37	1	43675708	43675708	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:43675708C>T	uc001cip.1	+	11	2171	c.2050C>T	c.(2050-2052)CAT>TAT	p.H684Y	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Intron|WDR65_uc001ciq.1_Missense_Mutation_p.H684Y	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	Error:Variant_position_missing_in_Q96MR6_after_alignment										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATTCATCCATCATTCATTGAA	0.279		NaN											0	0	0	0.001168	0	5	52									
SLC6A9	6536	broad.mit.edu	37	1	44474107	44474107	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:44474107G>A	uc001cll.2	-	5	919	c.727C>T	c.(727-729)CGG>TGG	p.R243W	SLC6A9_uc009vxe.2_Missense_Mutation_p.R99W|SLC6A9_uc010okm.1_Missense_Mutation_p.R170W|SLC6A9_uc001clm.2_Missense_Mutation_p.R189W|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.R174W|SLC6A9_uc001cln.2_Missense_Mutation_p.R170W|SLC6A9_uc010oko.1_Missense_Mutation_p.R59W|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	243	Extracellular (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	GCGGCTGGCCGAGAGCCATTG	0.642		NaN											0	0	0	0.004656	0	20	147									
PTCH2	8643	broad.mit.edu	37	1	45293690	45293690	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:45293690G>A	uc010olf.1	-	14	1895	c.1883C>T	c.(1882-1884)TCT>TTT	p.S628F	PTCH2_uc010olg.1_Missense_Mutation_p.S326F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	628	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CAGTGGGTCAGAAGGTGGGGG	0.622		NaN							Basal_Cell_Nevus_syndrome				0	0	0	0.002299	0	20	105									
DMBX1	127343	broad.mit.edu	37	1	46972824	46972824	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:46972824G>A	uc001cpx.2	+	1	157	c.142G>A	c.(142-144)GAG>AAG	p.E48K	DMBX1_uc001cpw.2_Missense_Mutation_p.E48K	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	48	Interacts with OXT2 and is required for repressor activity (By similarity).				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TACATTGGCTGAGCGCCTGGC	0.637		NaN											0	0	0	0.008291	0	10	40									
SPATA6	54558	broad.mit.edu	37	1	48918750	48918750	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:48918750G>A	uc001crr.1	-	2	270	c.105C>T	c.(103-105)ATC>ATT	p.I35I	SPATA6_uc001crs.1_Silent_p.I35I|SPATA6_uc010omv.1_Silent_p.I35I|SPATA6_uc001crt.2_5'UTR	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	35					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						CAAACACACAGATGCTAAGAT	0.393		NaN											0	0	0	0.010729	0	8	64									
ZFYVE9	9372	broad.mit.edu	37	1	52704969	52704969	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:52704969C>T	uc001cto.2	+	4	2052	c.1880C>T	c.(1879-1881)TCA>TTA	p.S627L	ZFYVE9_uc001ctn.2_Missense_Mutation_p.S627L|ZFYVE9_uc001ctp.2_Missense_Mutation_p.S627L	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	627					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						GGGGAAAACTCAGCAACCAAT	0.358		NaN											0	0	0	0.00245	0	12	74									
C1orf175	374977	broad.mit.edu	37	1	55119580	55119580	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:55119580G>A	uc010ooe.1	+	3	1305	c.981G>A	c.(979-981)ATG>ATA	p.M327I	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Missense_Mutation_p.M327I|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.M327I|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	327	Ser-rich.					integral to membrane	binding				0						CCTCATGCATGACTCTAATCC	0.562		NaN											0	0	0	0.010504	0	10	167									
C1orf175	374977	broad.mit.edu	37	1	55139782	55139782	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:55139782G>A	uc010ooe.1	+	10	2218	c.1894G>A	c.(1894-1896)GAC>AAC	p.D632N	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.D200N|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.D150N|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.D632N|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	632						integral to membrane	binding				0						TGAGGCTCTGGACGGCATCAT	0.527		NaN											0	0	0	0.012319	0	19	148									
TMEM61	199964	broad.mit.edu	37	1	55457567	55457567	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:55457567G>A	uc001cyd.2	+	3	698	c.424G>A	c.(424-426)GAG>AAG	p.E142K		NM_182532	NP_872338	Q8N0U2	TMM61_HUMAN	transmembrane protein 61	142						integral to membrane					0						CCCAGTGGCCGAGGGGCCCCC	0.647		NaN											0	0	0	0.010504	0	18	139									
DOCK7	85440	broad.mit.edu	37	1	63005436	63005436	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:63005436G>A	uc001daq.2	-	26	3207	c.3173C>T	c.(3172-3174)TCA>TTA	p.S1058L	DOCK7_uc001dan.2_Missense_Mutation_p.S919L|DOCK7_uc001dao.2_Missense_Mutation_p.S919L|DOCK7_uc001dap.2_Missense_Mutation_p.S1027L|DOCK7_uc001dam.2_Missense_Mutation_p.S238L	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1058					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						CTGAAATCGTGAAACTATATC	0.343		NaN											0	0	0	0.004672	0	3	23									
JAK1	3716	broad.mit.edu	37	1	65303766	65303766	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:65303766G>A	uc001dbu.1	-	22	3238	c.2989C>T	c.(2989-2991)CGG>TGG	p.R997W	JAK1_uc009wam.1_Missense_Mutation_p.R985W|JAK1_uc009wal.1_Missense_Mutation_p.R174W	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	997	Protein kinase 2.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		ACGTATTGCCGAGAACCCAAA	0.398		NaN	Mis		ALL								0	0	0	0.001984	0	6	45									
WLS	79971	broad.mit.edu	37	1	68564388	68564388	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:68564388G>A	uc001dee.2	-	12	1830	c.1559C>T	c.(1558-1560)TCG>TTG	p.S520L	uc001deb.1_RNA|uc001dec.1_RNA	NM_001002292	NP_001002292	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 2	Error:Variant_position_missing_in_Q5T9L3_after_alignment					multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						ataaagttccgaaacaaacaa	0		NaN											0	0	0	0.000602	0	3	44									
FUBP1	8880	broad.mit.edu	37	1	78444569	78444569	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:78444569C>T	uc001dii.2	-	1	209	c.120G>A	c.(118-120)CAG>CAA	p.Q40Q	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Silent_p.Q40Q|DNAJB4_uc010orn.1_5'Flank	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	40					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						CCACACTTACCTGCCGGGCTC	0.498		NaN											0	0	0	0.00361	0	47	397									
MCOLN3	55283	broad.mit.edu	37	1	85498382	85498382	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:85498382C>T	uc001dkp.2	-	6	822	c.729G>A	c.(727-729)CTG>CTA	p.L243L	MCOLN3_uc001dkq.2_Silent_p.L187L|MCOLN3_uc001dkr.2_Silent_p.L243L|MCOLN3_uc001dks.3_Silent_p.L88L	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	243						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		CACTTACAGTCAGAGTAAAGT	0.388		NaN											0	0	0	0.00361	0	33	252									
ABCA4	24	broad.mit.edu	37	1	94568588	94568588	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:94568588G>C	uc001dqh.2	-	5	657	c.553C>G	c.(553-555)CAA>GAA	p.Q185E	ABCA4_uc010otn.1_Missense_Mutation_p.Q185E	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	185	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GGACGGACTTGAGAGTTGATC	0.473		NaN											0	0	0	0.003271	0	29	200									
PTBP2	58155	broad.mit.edu	37	1	97278438	97278438	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:97278438C>G	uc001drq.2	+	12	1588	c.1342C>G	c.(1342-1344)CAA>GAA	p.Q448E	PTBP2_uc001drn.2_Missense_Mutation_p.Q453E|PTBP2_uc001dro.2_Missense_Mutation_p.Q448E|PTBP2_uc010otz.1_Missense_Mutation_p.Q464E|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Missense_Mutation_p.Q396E|PTBP2_uc001drr.2_Missense_Mutation_p.Q453E|PTBP2_uc010oua.1_Missense_Mutation_p.Q456E|PTBP2_uc001dru.2_RNA|PTBP2_uc001drs.1_Missense_Mutation_p.Q67E|PTBP2_uc001drt.2_Missense_Mutation_p.Q67E	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	448							nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		CAAAAATTTTCAAAACATTTT	0.358		NaN											0	0	0	0.009096	0	3	34									
PTBP2	58155	broad.mit.edu	37	1	97278881	97278881	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:97278881C>G	uc001drq.2	+	14	1762	c.1516C>G	c.(1516-1518)CAG>GAG	p.Q506E	PTBP2_uc001drn.2_Missense_Mutation_p.Q512E|PTBP2_uc001dro.2_Missense_Mutation_p.Q507E|PTBP2_uc010otz.1_Missense_Mutation_p.Q523E|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Missense_Mutation_p.Q455E|PTBP2_uc001drr.2_Missense_Mutation_p.Q511E|PTBP2_uc010oua.1_Missense_Mutation_p.Q515E|PTBP2_uc001dru.2_RNA|PTBP2_uc001drs.1_Missense_Mutation_p.Q126E|PTBP2_uc001drt.2_Missense_Mutation_p.Q125E	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	506	RRM 4.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		AGAAGCTATTCAGGCCTTGAT	0.348		NaN											0	0	0	0.004482	0	7	47									
DPYD	1806	broad.mit.edu	37	1	97839142	97839142	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:97839142C>T	uc001drv.2	-	16	2170	c.2033G>A	c.(2032-2034)AGA>AAA	p.R678K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	678	Uracil binding (Potential).				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GCCCATTCCTCTTTCTCCCAT	0.453		NaN											0	0	0	0.004482	0	5	58									
CCDC76	54482	broad.mit.edu	37	1	100613836	100613836	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:100613836G>A	uc001dsv.2	+	10	1223	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N	CCDC76_uc010ouf.1_RNA|CCDC76_uc009wea.2_Intron	NM_019083	NP_061956	Q9NUP7	TRM13_HUMAN	coiled-coil domain containing 76	402					tRNA processing		metal ion binding|methyltransferase activity			ovary(1)	1		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0814)|all cancers(265;0.133)|COAD - Colon adenocarcinoma(174;0.146)|Lung(183;0.194)		AGAGCATGATGATGGAGGATA	0.388		NaN											0	0	0	0.004656	0	19	140									
GPR88	54112	broad.mit.edu	37	1	101004982	101004982	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:101004982C>T	uc001dth.2	+	2	864	c.460C>T	c.(460-462)CAG>TAG	p.Q154*		NM_022049	NP_071332	Q9GZN0	GPR88_HUMAN	G-protein coupled receptor 88	154	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_epithelial(167;1.19e-05)|all_lung(203;0.00159)|Lung NSC(277;0.00171)		Epithelial(280;0.0372)|all cancers(265;0.0558)|COAD - Colon adenocarcinoma(174;0.141)|Colorectal(144;0.156)|Lung(183;0.189)		GGCGCTGTACCAGAGGCGCCA	0.756		NaN											0	0	0	0.004672	0	3	21									
VCAM1	7412	broad.mit.edu	37	1	101194797	101194797	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:101194797C>G	uc001dti.2	+	5	1183	c.1063C>G	c.(1063-1065)CTG>GTG	p.L355V	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Missense_Mutation_p.L293V	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	355	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AGACAGCCCTCTGAGCGGGAA	0.527		NaN											0	0	0	0.004482	0	7	49									
SLC30A7	148867	broad.mit.edu	37	1	101361836	101361836	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:101361836C>G	uc001dtn.2	+	1	205	c.18C>G	c.(16-18)ATC>ATG	p.I6M	EXTL2_uc001dtk.1_5'Flank|EXTL2_uc001dtl.1_5'Flank|EXTL2_uc010ouk.1_5'Flank|EXTL2_uc001dtm.1_5'Flank|SLC30A7_uc001dto.2_Missense_Mutation_p.I6M	NM_001144884	NP_001138356	Q8NEW0	ZNT7_HUMAN	zinc transporter like 2	6	Cytoplasmic (Potential).				zinc ion transport	Golgi apparatus|integral to membrane	cation transmembrane transporter activity|protein binding				0		all_epithelial(167;0.000445)|all_lung(203;0.00645)|Lung NSC(277;0.0119)		Epithelial(280;0.0437)|all cancers(265;0.0498)|COAD - Colon adenocarcinoma(174;0.162)|Colorectal(144;0.19)|Lung(183;0.201)		CCCTGTCCATCAAAGACGATG	0.587		NaN											0	0	0	0.003163	0	12	95									
S1PR1	1901	broad.mit.edu	37	1	101705413	101705413	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:101705413C>T	uc001dud.2	+	2	1387	c.873C>T	c.(871-873)TTC>TTT	p.F291F	S1PR1_uc009weg.2_Silent_p.F291F	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	291	Extracellular (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						ACATCCTCTTCAGAGCGGAGT	0.552		NaN											0	0	0	0.00361	0	54	468									
AHCYL1	10768	broad.mit.edu	37	1	110555027	110555027	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:110555027G>A	uc001dyx.2	+	4	787	c.420G>A	c.(418-420)GAG>GAA	p.E140E	AHCYL1_uc010ovw.1_Silent_p.E93E|AHCYL1_uc001dyy.2_Silent_p.E93E|AHCYL1_uc010ovx.1_Silent_p.E93E	NM_006621	NP_006612	O43865	SAHH2_HUMAN	S-adenosylhomocysteine hydrolase-like 1	140					one-carbon metabolic process	endoplasmic reticulum	adenosylhomocysteinase activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0259)|Colorectal(144;0.123)|all cancers(265;0.134)|Epithelial(280;0.141)|LUSC - Lung squamous cell carcinoma(189;0.143)		CTCAGGGGGAGAAGCCCTTGG	0.493		NaN											0	0	0	0.001368	0	9	76									
SLC6A17	388662	broad.mit.edu	37	1	110716657	110716657	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:110716657C>G	uc009wfq.2	+	4	968	c.507C>G	c.(505-507)TTC>TTG	p.F169L		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	169	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		TCTATTTCTTCAAGTCCTTCC	0.577		NaN											0	0	0	0.007291	0	27	165									
WNT2B	7482	broad.mit.edu	37	1	113058964	113058964	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:113058964C>T	uc001ecb.2	+	3	1121	c.606C>T	c.(604-606)TTC>TTT	p.F202F	WNT2B_uc001eca.2_Silent_p.F183F|WNT2B_uc009wgg.2_Silent_p.F110F	NM_024494	NP_078613	Q93097	WNT2B_HUMAN	wingless-type MMTV integration site family,	202					chondrocyte differentiation|cornea development in camera-type eye|dorsal/ventral axis specification|forebrain regionalization|hemopoietic stem cell proliferation|iris morphogenesis|lens development in camera-type eye|lung induction|male gonad development|neuron differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding|signal transducer activity			ovary(2)|breast(2)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;7.31e-07)|all_epithelial(167;4.59e-06)|all_lung(203;2.56e-05)|Lung NSC(69;4.38e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCAAGGCCTTCGTGGATGCCA	0.557		NaN											0	0	0	0.00245	0	13	108									
SLC16A1	6566	broad.mit.edu	37	1	113464733	113464733	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:113464733C>T	uc001ecx.2	-	3	1072	c.240G>A	c.(238-240)GTG>GTA	p.V80V	SLC16A1_uc001ecy.2_Silent_p.V80V|SLC16A1_uc001ecz.2_Silent_p.V80V|AFARP1_uc001eda.1_5'Flank	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	80	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	CATATTTATTCACCAGGATAC	0.403		NaN											0	0	0	0.000602	0	5	49									
MAGI3	260425	broad.mit.edu	37	1	114133225	114133225	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:114133225C>G	uc001edk.2	+	5	1064	c.883C>G	c.(883-885)CTG>GTG	p.L295V	MAGI3_uc001edh.3_Missense_Mutation_p.L295V|MAGI3_uc001edi.3_Missense_Mutation_p.L295V|MAGI3_uc010owm.1_Missense_Mutation_p.L295V|MAGI3_uc001edj.2_Missense_Mutation_p.L16V	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	295	WW 1.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTGGAACCACTGCCCAAAAA	0.408		NaN											0	0	0	0.009096	0	4	40									
HIPK1	204851	broad.mit.edu	37	1	114515811	114515811	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:114515811C>T	uc001eem.2	+	16	3471	c.3310C>T	c.(3310-3312)CAC>TAC	p.H1104Y	HIPK1_uc001een.2_Missense_Mutation_p.H1104Y|HIPK1_uc001eeo.2_Missense_Mutation_p.H730Y|HIPK1_uc001eep.2_Missense_Mutation_p.H710Y|HIPK1_uc001eeq.2_Missense_Mutation_p.H396Y	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGCCCCTGCTCACCTGCCAAG	0.627		NaN											0	0	0	0.00361	0	43	367									
SIKE1	80143	broad.mit.edu	37	1	115319033	115319033	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:115319033C>T	uc001efo.3	-	4	536	c.456G>A	c.(454-456)ATG>ATA	p.M152I	SIKE1_uc001efp.3_Missense_Mutation_p.M156I	NM_025073	NP_079349	Q9BRV8	SIKE1_HUMAN	suppressor of IKK epsilon isoform 2	152						cytosol	protein binding				0						CTGCTTTCCTCATCACTTCTC	0.363		NaN											0	0	0	0.006214	0	8	156									
SIKE1	80143	broad.mit.edu	37	1	115319072	115319072	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:115319072C>G	uc001efo.3	-	4	497	c.417G>C	c.(415-417)GAG>GAC	p.E139D	SIKE1_uc001efp.3_Missense_Mutation_p.E143D	NM_025073	NP_079349	Q9BRV8	SIKE1_HUMAN	suppressor of IKK epsilon isoform 2	139						cytosol	protein binding				0						CAATCTGACTCTCAATTTCCT	0.358		NaN											0	0	0	0.00308	0	6	101									
ADAM30	11085	broad.mit.edu	37	1	120438390	120438390	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:120438390C>T	uc001eij.2	-	1	724	c.570G>A	c.(568-570)GCG>GCA	p.A190A		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	190					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CCCTTAGCCTCGCCTTATTCT	0.408		NaN											0	0	0	0.001168	0	5	74									
NBPF10	100132406	broad.mit.edu	37	1	145311808	145311808	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:145311808G>A	uc001end.3	+	14	1911	c.1876G>A	c.(1876-1878)GAG>AAG	p.E626K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_5'UTR|NBPF10_uc010oyl.1_5'UTR|NBPF10_uc010oyj.1_5'UTR	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GCTGCTGGATGAGAAAGGGCC	0.483		NaN											0	0	0	0.000602	0	4	33									
PEX11B	8799	broad.mit.edu	37	1	145522591	145522591	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:145522591C>T	uc001eny.1	+	4	470	c.452C>T	c.(451-453)TCT>TTT	p.S151F	NBPF10_uc001emp.3_Intron|PEX11B_uc010oyu.1_Missense_Mutation_p.S137F|ITGA10_uc001enz.1_5'Flank|ITGA10_uc001eoa.2_5'Flank|ITGA10_uc010oyv.1_5'Flank|ITGA10_uc009wiw.2_5'Flank	NM_003846	NP_003837	O96011	PX11B_HUMAN	peroxisomal biogenesis factor 11 beta	151					peroxisome fission|signal transduction	integral to peroxisomal membrane	protein binding				0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAAGAGTCTTCTGCTTGTAGC	0.527		NaN											0	0	0	0.00245	0	13	88									
RNF115	27246	broad.mit.edu	37	1	145682086	145682086	+	Silent	SNP	T	T	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:145682086T>C	uc001eoj.2	+	5	696	c.492T>C	c.(490-492)CCT>CCC	p.P164P	NBPF10_uc001emp.3_Intron|RNF115_uc001eok.2_Silent_p.P131P|RNF115_uc009wiy.2_Silent_p.P83P	NM_014455	NP_055270	Q9Y4L5	RN115_HUMAN	Rabring 7	164					protein autoubiquitination	cytosol	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						CTCCACACCCTTTTTCCTGGT	0.358		NaN											0	0	0	0.000602	0	3	130									
RNF115	27246	broad.mit.edu	37	1	145687020	145687020	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:145687020G>A	uc001eoj.2	+	8	916	c.712G>A	c.(712-714)GAA>AAA	p.E238K	NBPF10_uc001emp.3_Intron|RNF115_uc001eok.2_Missense_Mutation_p.E205K|RNF115_uc009wiy.2_Missense_Mutation_p.E157K	NM_014455	NP_055270	Q9Y4L5	RN115_HUMAN	Rabring 7	238	RING-type.				protein autoubiquitination	cytosol	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						TTACACAGTTGAAGAGGAAGT	0.413		NaN											0	0	0	0.00499	0	13	130									
RNF115	27246	broad.mit.edu	37	1	145687023	145687023	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:145687023G>A	uc001eoj.2	+	8	919	c.715G>A	c.(715-717)GAG>AAG	p.E239K	NBPF10_uc001emp.3_Intron|RNF115_uc001eok.2_Missense_Mutation_p.E206K|RNF115_uc009wiy.2_Missense_Mutation_p.E158K	NM_014455	NP_055270	Q9Y4L5	RN115_HUMAN	Rabring 7	239	RING-type.				protein autoubiquitination	cytosol	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						CACAGTTGAAGAGGAAGTCCG	0.428		NaN											0	0	0	0.004007	0	12	133									
GPR89B	51463	broad.mit.edu	37	1	147400652	147400652	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:147400652G>C	uc001epv.3	+	1	147	c.3G>C	c.(1-3)ATG>ATC	p.M1I	GPR89B_uc010ozs.1_Missense_Mutation_p.M1I|GPR89B_uc010ozt.1_5'UTR|GPR89B_uc010ozu.1_5'UTR|GPR89B_uc001epw.3_5'UTR|GPR89B_uc010ozv.1_5'Flank	NM_016334	NP_057418	B7ZAQ6	GPHRA_HUMAN	G protein-coupled receptor 89B	1					intracellular pH reduction|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport	Golgi cisterna membrane|Golgi-associated vesicle membrane|integral to membrane	signal transducer activity|voltage-gated anion channel activity				0	all_hematologic(923;0.0276)					ACTTCGCCATGAGTTTCCTGA	0.647		NaN											0	0	0	0.001368	0	11	121									
NBPF14	25832	broad.mit.edu	37	1	148009410	148009410	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:148009410G>A	uc001eqq.2	-	16	1914	c.1897C>T	c.(1897-1899)CAG>TAG	p.Q633*	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Nonsense_Mutation_p.Q206*|NBPF14_uc001eqx.2_Intron|NBPF14_uc010pad.1_Intron|NBPF14_uc001eqs.1_Intron	NM_015383	NP_056198	Q5TI25	NBPFE_HUMAN	hypothetical protein LOC25832	633	NBPF 7.					cytoplasm				ovary(1)	1	all_hematologic(923;0.032)					CTGTAGGGCTGGCATGAGTCA	0.478		NaN											0	0	0	0.001368	0	8	393									
HIST2H2AC	8338	broad.mit.edu	37	1	149858710	149858710	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:149858710G>T	uc001etd.2	+	1	186	c.186G>T	c.(184-186)GAG>GAT	p.E62D	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	62					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			TGACCGCCGAGATCCTGGAGC	0.672		NaN											1	0	1.15088e-07	0.004007	1.20577e-07	13	107									
OTUD7B	56957	broad.mit.edu	37	1	149921589	149921589	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:149921589G>C	uc001etn.2	-	9	1422	c.1066C>G	c.(1066-1068)CAG>GAG	p.Q356E		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	356	Catalytic.|OTU.|TRAF-binding.				negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			AAGTGGGCCTGATCATAGGCG	0.512		NaN											0	0	0	0.004482	0	7	91									
OTUD7B	56957	broad.mit.edu	37	1	149921612	149921612	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:149921612G>T	uc001etn.2	-	9	1399	c.1043C>A	c.(1042-1044)TCC>TAC	p.S348Y		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	348	Catalytic.|OTU.|TRAF-binding.				negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CACCAGAGGGGAGCGGTGACA	0.512		NaN											1	0	4.096e-09	0.001168	4.32634e-09	6	71									
ECM1	1893	broad.mit.edu	37	1	150483939	150483939	+	Missense_Mutation	SNP	G	G	A	rs149230481		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:150483939G>A	uc001eus.2	+	7	914	c.715G>A	c.(715-717)GAA>AAA	p.E239K	ECM1_uc010pce.1_3'UTR|ECM1_uc010pcf.1_3'UTR|ECM1_uc001eut.2_Intron|ECM1_uc001euu.2_Missense_Mutation_p.E268K|ECM1_uc001euv.2_Missense_Mutation_p.E266K|ECM1_uc009wlu.2_5'UTR	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	239	2 X approximate repeats.|1.				angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CTAGTGGGAGGAAGCAATGAG	0.597		NaN											0	0	0	0.005443	0	23	219									
BNIPL	149428	broad.mit.edu	37	1	151018574	151018574	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:151018574G>A	uc001ewl.2	+	9	1143	c.970G>A	c.(970-972)GAC>AAC	p.D324N	BNIPL_uc009wmi.2_Missense_Mutation_p.D242N|BNIPL_uc009wmj.2_RNA|C1orf56_uc001ewn.2_5'Flank	NM_138278	NP_612122	Q7Z465	BNIPL_HUMAN	BCL2/adenovirus E1B 19kD interacting protein	324	CRAL-TRIO.				apoptosis|induction of apoptosis|negative regulation of cell proliferation|regulation of growth rate	cytosol|nucleus	identical protein binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCGTTTTCTGGACAGCCTGGG	0.443		NaN											0	0	0	0.010729	0	8	61									
S100A11	6282	broad.mit.edu	37	1	152006245	152006245	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152006245C>T	uc001ezn.2	-	2	155	c.35G>A	c.(34-36)CGG>CAG	p.R12Q	uc001ezm.1_Intron	NM_005620	NP_005611	P31949	S10AB_HUMAN	S100 calcium binding protein A11	12					negative regulation of cell proliferation|negative regulation of DNA replication|signal transduction	cytoplasm|nucleus|ruffle	calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|S100 beta binding				0	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTCGATGCACCGCTCAGTCTC	0.458		NaN											0	0	0	0.004482	0	8	90									
HRNR	388697	broad.mit.edu	37	1	152193080	152193080	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152193080G>C	uc001ezt.1	-	3	1101	c.1025C>G	c.(1024-1026)TCA>TGA	p.S342*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	342	3.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTCTGGCCTGAGCCAGACTC	0.582		NaN											0	0	0	0.00308	0	5	97									
FLG	2312	broad.mit.edu	37	1	152279068	152279068	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152279068G>C	uc001ezu.1	-	3	8330	c.8294C>G	c.(8293-8295)TCC>TGC	p.S2765C		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2765	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCATGGCGGGATCCTTGTCT	0.577		NaN							Ichthyosis				0	0	0	0.011902	0	24	512									
FLG	2312	broad.mit.edu	37	1	152279987	152279987	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152279987G>C	uc001ezu.1	-	3	7411	c.7375C>G	c.(7375-7377)CAG>GAG	p.Q2459E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2459	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGGTGTCCTGACCCTCTTGG	0.587		NaN							Ichthyosis				0	0	0	0.00361	0	82	685									
FLG2	388698	broad.mit.edu	37	1	152324509	152324509	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152324509C>T	uc001ezw.3	-	3	5826	c.5753G>A	c.(5752-5754)AGA>AAA	p.R1918K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1918							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTTTGGTGTCTCTTGTGAAC	0.507		NaN											0	0	0	0.006122	0	17	199									
FLG2	388698	broad.mit.edu	37	1	152325449	152325449	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152325449G>C	uc001ezw.3	-	3	4886	c.4813C>G	c.(4813-4815)CAA>GAA	p.Q1605E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1605							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTTCATGTTGAGATCCGGCT	0.512		NaN											0	0	0	0.00623	0	34	251									
SPRR4	163778	broad.mit.edu	37	1	152944474	152944474	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152944474G>A	uc001fav.1	+	2	171	c.108G>A	c.(106-108)GAG>GAA	p.E36E		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	36	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AATGTCAAGAGACATGTGCAC	0.498		NaN											0	0	0	0.012319	0	18	129									
SPRR4	163778	broad.mit.edu	37	1	152944534	152944534	+	Silent	SNP	G	G	A	rs147360157		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:152944534G>A	uc001fav.1	+	2	231	c.168G>A	c.(166-168)CCG>CCA	p.P56P		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	56	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AATGCCCACCGAAAGGCACCA	0.522		NaN											0	0	0	0.00499	0	15	151									
KCNN3	3782	broad.mit.edu	37	1	154842073	154842073	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:154842073G>A	uc001ffp.2	-	1	682	c.368C>T	c.(367-369)TCC>TTC	p.S123F	KCNN3_uc009wox.1_Missense_Mutation_p.S123F	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	128						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TTGCCTGGAGGAAGGGTGGAG	0.642		NaN											0	0	0	0.010729	0	9	99									
ZBTB7B	51043	broad.mit.edu	37	1	154987446	154987446	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:154987446G>C	uc001fgk.3	+	3	468	c.310G>C	c.(310-312)GAA>CAA	p.E104Q	ZBTB7B_uc009wpa.2_Missense_Mutation_p.E104Q|ZBTB7B_uc001fgj.3_Missense_Mutation_p.E138Q|ZBTB7B_uc010peq.1_Missense_Mutation_p.E138Q|ZBTB7B_uc001fgl.3_Missense_Mutation_p.E104Q	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	104	BTB.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CGCCCTCCTTGAATTTGCCTA	0.647		NaN											0	0	0	0.009096	0	4	53									
ZBTB7B	51043	broad.mit.edu	37	1	154988052	154988052	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:154988052G>C	uc001fgk.3	+	3	1074	c.916G>C	c.(916-918)GAT>CAT	p.D306H	ZBTB7B_uc009wpa.2_Missense_Mutation_p.D306H|ZBTB7B_uc001fgj.3_Missense_Mutation_p.D340H|ZBTB7B_uc010peq.1_Missense_Mutation_p.D340H|ZBTB7B_uc001fgl.3_Missense_Mutation_p.D306H	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	306					cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCTGGGCTCAGATGAGGATGC	0.622		NaN											0	0	0	0.004482	0	7	85									
RUSC1	23623	broad.mit.edu	37	1	155292224	155292224	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:155292224C>T	uc001fkj.2	+	2	889	c.660C>T	c.(658-660)ATC>ATT	p.I220I	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_5'Flank|C1orf104_uc001fki.2_Intron|RUSC1_uc001fkk.2_Silent_p.I220I|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_5'Flank|RUSC1_uc001fkl.2_5'Flank|RUSC1_uc001fkp.2_5'Flank|RUSC1_uc001fkq.2_5'Flank|RUSC1_uc010pgb.1_5'Flank|RUSC1_uc009wqp.1_5'Flank|RUSC1_uc001fkn.2_5'Flank|RUSC1_uc001fko.2_5'Flank|RUSC1_uc001fkr.2_5'Flank	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	220						cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			ATGGGAAAATCGACGCTGGGA	0.502		NaN											0	0	0	0.00308	0	6	61									
ASH1L	55870	broad.mit.edu	37	1	155450002	155450002	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:155450002G>C	uc009wqq.2	-	3	3139	c.2659C>G	c.(2659-2661)CCA>GCA	p.P887A	ASH1L_uc001fkt.2_Missense_Mutation_p.P887A|ASH1L_uc009wqr.1_Missense_Mutation_p.P887A	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	887	A.T hook 1.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CTCTTTTTTGGAAAAGGAGAC	0.443		NaN											0	0	0	0.006214	0	6	69									
ASH1L	55870	broad.mit.edu	37	1	155450149	155450149	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:155450149G>C	uc009wqq.2	-	3	2992	c.2512C>G	c.(2512-2514)CAA>GAA	p.Q838E	ASH1L_uc001fkt.2_Missense_Mutation_p.Q838E|ASH1L_uc009wqr.1_Missense_Mutation_p.Q838E	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	838					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CCTTCCAGTTGAGGCATCTCC	0.408		NaN											0	0	0	0.000602	0	4	49									
YY1AP1	55249	broad.mit.edu	37	1	155631206	155631206	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:155631206C>T	uc001fln.2	-	10	1050	c.1026G>A	c.(1024-1026)AAG>AAA	p.K342K	YY1AP1_uc001flg.2_Silent_p.K81K|YY1AP1_uc010pgg.1_Silent_p.K181K|YY1AP1_uc010pgh.1_Silent_p.K285K|YY1AP1_uc010pgi.1_Silent_p.K434K|YY1AP1_uc001flh.2_Silent_p.K414K|YY1AP1_uc009wqt.2_Silent_p.K265K|YY1AP1_uc001flk.2_Silent_p.K285K|YY1AP1_uc001fll.2_Silent_p.K296K|YY1AP1_uc009wqv.2_Silent_p.K13K|YY1AP1_uc001flm.2_Silent_p.K285K|YY1AP1_uc001fli.2_Silent_p.K296K|YY1AP1_uc009wqu.2_Silent_p.K129K|YY1AP1_uc001flj.2_Silent_p.K276K|YY1AP1_uc009wqw.2_Silent_p.K265K|YY1AP1_uc001flo.2_Silent_p.K230K|YY1AP1_uc001flp.2_Silent_p.K296K|YY1AP1_uc010pgj.1_Silent_p.K362K|YY1AP1_uc009wqx.2_Silent_p.K434K	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	342					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GTTTGGTCTTCTTATAAAACT	0.453		NaN											0	0	0	0.003163	0	6	71									
GON4L	54856	broad.mit.edu	37	1	155774800	155774800	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:155774800C>G	uc001flz.2	-	11	1682	c.1585G>C	c.(1585-1587)GAT>CAT	p.D529H	GON4L_uc001fly.1_Missense_Mutation_p.D529H|GON4L_uc009wrh.1_Missense_Mutation_p.D529H|GON4L_uc001fma.1_Missense_Mutation_p.D529H|GON4L_uc001fmc.2_Missense_Mutation_p.D529H|GON4L_uc001fmd.3_Missense_Mutation_p.D529H|GON4L_uc009wri.2_Missense_Mutation_p.D115H|GON4L_uc009wrj.1_Missense_Mutation_p.D44H|GON4L_uc001fme.2_Missense_Mutation_p.D357H|GON4L_uc001fmf.2_Missense_Mutation_p.D223H	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	529	Asp-rich.				regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TCCTCATCATCTGCCGTATTG	0.463		NaN											0	0	0	0.007291	0	23	222									
MEF2D	4209	broad.mit.edu	37	1	156438787	156438787	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:156438787G>A	uc001fpc.2	-	10	1422	c.1032C>T	c.(1030-1032)CTC>CTT	p.L344L	MEF2D_uc001fpb.2_Silent_p.L337L|MEF2D_uc001fpd.2_Silent_p.L337L|MEF2D_uc001fpe.1_Silent_p.L344L|MEF2D_uc009wsa.2_RNA	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	344					apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTAAGGAGGAGAGCTCTGCAC	0.448		NaN											0	0	0	0.007413	0	13	91									
GPATCH4	54865	broad.mit.edu	37	1	156565223	156565223	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:156565223C>T	uc001fpm.2	-	8	949	c.910G>A	c.(910-912)GAA>AAA	p.E304K	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Missense_Mutation_p.E299K	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	299						intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTCTCCTCTTCATGGTGCCAC	0.542		NaN											0	0	0	0.010818	0	29	196									
HAPLN2	60484	broad.mit.edu	37	1	156594397	156594397	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:156594397G>A	uc001fpn.1	+	6	968	c.561G>A	c.(559-561)TGG>TGA	p.W187*		NM_021817	NP_068589	Q9GZV7	HPLN2_HUMAN	brain link protein-1 precursor	187	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CGCCAGCTTGGACCGAGGGTC	0.716		NaN											0	0	0	0.006214	0	6	77									
NES	10763	broad.mit.edu	37	1	156642912	156642912	+	Silent	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:156642912G>T	uc001fpq.2	-	4	1201	c.1068C>A	c.(1066-1068)CTC>CTA	p.L356L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	356	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGGTGAGGGGAGGGAAGTTG	0.602		NaN											1	0	6.40141e-05	0.010729	6.60002e-05	11	67									
INSRR	3645	broad.mit.edu	37	1	156815422	156815422	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:156815422G>A	uc010pht.1	-	10	2417	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	721					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGGGGATGGTGATCGCGTTGT	0.642		NaN											0	0	0	0.006214	0	9	85									
NTRK1	4914	broad.mit.edu	37	1	156830838	156830838	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:156830838G>A	uc001fqh.1	+	1	168	c.112G>A	c.(112-114)GAT>AAT	p.D38N	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc010pht.1_5'Flank|INSRR_uc009wsj.1_5'Flank|NTRK1_uc001fqi.1_Missense_Mutation_p.D38N|NTRK1_uc009wsk.1_Missense_Mutation_p.D38N	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	38	Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	ACCCTGCCCCGATGCCTGCTG	0.726		NaN	T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			0	0	0	0.004482	0	7	22									
SPTA1	6708	broad.mit.edu	37	1	158632519	158632519	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:158632519C>T	uc001fst.1	-	17	2636	c.2437G>A	c.(2437-2439)GAA>AAA	p.E813K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	813	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCTGAGGGTTCAGTCTCTTGG	0.512		NaN											0	0	0	0.006214	0	7	51									
VANGL2	57216	broad.mit.edu	37	1	160389332	160389332	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:160389332C>T	uc001fwb.1	+	5	1032	c.733C>T	c.(733-735)CAG>TAG	p.Q245*	VANGL2_uc001fwc.1_Nonsense_Mutation_p.Q245*	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	245	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GCTCCAGCCTCAGTTCACGCT	0.647		NaN											0	0	0	0.009096	0	4	64									
LY9	4063	broad.mit.edu	37	1	160793302	160793302	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:160793302G>C	uc001fwu.2	+	8	1596	c.1546G>C	c.(1546-1548)GAG>CAG	p.E516Q	LY9_uc001fwv.2_Missense_Mutation_p.E502Q|LY9_uc001fww.2_Missense_Mutation_p.E426Q|LY9_uc001fwx.2_Missense_Mutation_p.E426Q|LY9_uc001fwy.1_Missense_Mutation_p.E314Q|LY9_uc001fwz.2_Missense_Mutation_p.E154Q	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	516	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CCAAGGATATGAGAAGCTGGA	0.552		NaN											0	0	0	0.004672	0	3	71									
MPZ	4359	broad.mit.edu	37	1	161276525	161276525	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:161276525G>A	uc001gaf.3	-	3	488	c.451C>T	c.(451-453)CAG>TAG	p.Q151*	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	141	Ig-like V-type.|Extracellular (Potential).				synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			AGCGTGACCTGAGAGGTCTTG	0.507		NaN											0	0	0	0.003163	0	12	100									
FCGR3B	2215	broad.mit.edu	37	1	161596168	161596168	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:161596168C>T	uc009wul.2	-	4	618	c.344G>A	c.(343-345)CGG>CAG	p.R115Q		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	115					immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAACACCCACCGAGGGGCCTG	0.562		NaN											0	0	0	0.001168	0	5	40									
FCRLA	84824	broad.mit.edu	37	1	161681858	161681858	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:161681858G>A	uc001gbe.2	+	5	945	c.703G>A	c.(703-705)GAT>AAT	p.D235N	FCRLA_uc001gbd.2_Missense_Mutation_p.D229N|FCRLA_uc001gbf.2_Missense_Mutation_p.D140N|FCRLA_uc001gbg.2_Missense_Mutation_p.D89N|FCRLA_uc009wuo.2_Missense_Mutation_p.D95N|FCRLA_uc009wup.2_Intron|FCRLA_uc009wuq.2_Intron	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	212	Ig-like C2-type 2.				cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			CTTCTACAAGGATGGAAGGAT	0.562		NaN											0	0	0	0.004482	0	9	77									
OLFML2B	25903	broad.mit.edu	37	1	161993194	161993194	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:161993194G>A	uc001gbu.2	-	1	451	c.27C>T	c.(25-27)CTC>CTT	p.L9L	OLFML2B_uc010pkq.1_Silent_p.L9L	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	9										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GAGCGAAGTAGAGAACTAGCA	0.632		NaN											0	0	0	0.001168	0	6	56									
UAP1	6675	broad.mit.edu	37	1	162535885	162535885	+	Silent	SNP	G	G	A	rs151151506		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:162535885G>A	uc001gce.3	+	2	356	c.27G>A	c.(25-27)ACG>ACA	p.T9T		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	9					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			TCAAACTCACGTTGTCCAAAG	0.413		NaN											0	0	0	0.00245	0	10	90									
POU2F1	5451	broad.mit.edu	37	1	167367230	167367230	+	Splice_Site	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:167367230G>A	uc001gec.2	+	12	1223	c.1061_splice	c.e12-1	p.E354_splice	POU2F1_uc001ged.2_Splice_Site_p.E352_splice|POU2F1_uc001gee.2_Splice_Site_p.E354_splice|POU2F1_uc010plh.1_Splice_Site_p.E291_splice|POU2F1_uc001gef.2_Splice_Site_p.E366_splice|POU2F1_uc001geg.2_Splice_Site_p.E252_splice|POU2F1_uc009wvg.1_5'Flank	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1						negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						CATTCTTACAGAGAACCTCTC	0.413		NaN											0	0	0	0.00308	0	6	26									
RCSD1	92241	broad.mit.edu	37	1	167653186	167653186	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:167653186C>A	uc001gem.2	+	2	243	c.56C>A	c.(55-57)TCG>TAG	p.S19*	RCSD1_uc010pli.1_Nonsense_Mutation_p.S19*	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	19										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					GCGTCCCCCTCGGTGGCCCAG	0.602		NaN											1	0	1.19403e-26	0.00361	1.29171e-26	47	376									
ADCY10	55811	broad.mit.edu	37	1	167778974	167778974	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:167778974G>C	uc001ger.2	-	33	5072	c.4774C>G	c.(4774-4776)CAG>GAG	p.Q1592E	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.Q1500E|ADCY10_uc010plj.1_Missense_Mutation_p.Q1439E	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1592					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGAAGATCCTGAATGTTTACC	0.373		NaN											0	0	0	0.009096	0	3	87									
ADCY10	55811	broad.mit.edu	37	1	167849781	167849781	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:167849781G>A	uc001ger.2	-	10	1385	c.1087C>T	c.(1087-1089)CTG>TTG	p.L363L	ADCY10_uc009wvk.2_Silent_p.L271L|ADCY10_uc010plj.1_Silent_p.L210L|ADCY10_uc009wvl.2_Silent_p.L362L|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	363	Guanylate cyclase 2.				intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						GCACATTCCAGAGCATGAGTG	0.522		NaN											0	0	0	0.010729	0	12	93									
SLC19A2	10560	broad.mit.edu	37	1	169437922	169437922	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:169437922C>G	uc001gge.3	-	4	1387	c.1183G>C	c.(1183-1185)GTC>CTC	p.V395L	SLC19A2_uc001ggf.3_Missense_Mutation_p.V194L	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	395	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					ATTCTGAAGACAACATAGGAT	0.383		NaN											0	0	0	0.00308	0	5	56									
SLC19A2	10560	broad.mit.edu	37	1	169446801	169446801	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:169446801G>A	uc001gge.3	-	2	603	c.399C>T	c.(397-399)ATC>ATT	p.I133I	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	133	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					TGGCTGTGGCGATGCCATAAA	0.453		NaN											0	0	0	0.010729	0	10	94									
F5	2153	broad.mit.edu	37	1	169512269	169512269	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:169512269C>T	uc001ggg.1	-	13	2204	c.2059G>A	c.(2059-2061)GAT>AAT	p.D687N		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	687					cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCATCATCATCTGGGATACAT	0.398		NaN											0	0	0	0.001168	0	6	53									
PRDX6	9588	broad.mit.edu	37	1	173454533	173454533	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:173454533G>A	uc001giy.1	+	3	337	c.286G>A	c.(286-288)GAA>AAA	p.E96K		NM_004905	NP_004896	P30041	PRDX6_HUMAN	peroxiredoxin 6	96	Thioredoxin.				cell redox homeostasis|phospholipid catabolic process	cytoplasmic membrane-bounded vesicle|cytosol|lysosome	peroxiredoxin activity|phospholipase A2 activity|protein binding			central_nervous_system(1)	1						AGAGCCCACAGAAAAGTTACC	0.438		NaN											0	0	0	0.009096	0	3	37									
GPR52	9293	broad.mit.edu	37	1	174417291	174417291	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:174417291G>T	uc001gka.1	+	1	80	c.42G>T	c.(40-42)ATG>ATT	p.M14I	RABGAP1L_uc001gjw.2_Intron|RABGAP1L_uc001gjx.2_Intron|RABGAP1L_uc001gjy.2_Intron|RABGAP1L_uc001gjz.2_Intron	NM_005684	NP_005675	Q9Y2T5	GPR52_HUMAN	G protein-coupled receptor 52	14	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1						TCCTGAACATGAGCAGTGGCA	0.507		NaN											1	0	2.61681e-11	0.00245	2.77755e-11	12	91									
TNN	63923	broad.mit.edu	37	1	175097777	175097777	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:175097777G>A	uc001gkl.1	+	15	3338	c.3225G>A	c.(3223-3225)CAG>CAA	p.Q1075Q		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1075	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGGTTCAGCAGAACAGCAATG	0.582		NaN											0	0	0	0.00361	0	80	197									
TNR	7143	broad.mit.edu	37	1	175372540	175372540	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:175372540C>T	uc001gkp.1	-	2	793	c.712G>A	c.(712-714)GAC>AAC	p.D238N	TNR_uc009wwu.1_Missense_Mutation_p.D238N|TNR_uc010pmz.1_Missense_Mutation_p.D238N	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	238	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GAGCTGCAGTCTGTTGGGCAC	0.647		NaN											0	0	0	0.009535	0	30	310									
ASTN1	460	broad.mit.edu	37	1	176833599	176833599	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:176833599G>A	uc001glc.2	-	23	3918	c.3706C>T	c.(3706-3708)CTT>TTT	p.L1236F	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1244					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GGTTCCTGAAGGAGTCCATTG	0.532		NaN											0	0	0	0.00308	0	7	60									
SEC16B	89866	broad.mit.edu	37	1	177937001	177937001	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:177937001G>C	uc001gli.1	-	2	206	c.116C>G	c.(115-117)TCT>TGT	p.S39C	SEC16B_uc001glk.1_5'UTR|SEC16B_uc009wwz.1_5'UTR|SEC16B_uc001glj.1_Missense_Mutation_p.S39C|SEC16B_uc001gll.3_Missense_Mutation_p.S39C	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	39	Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						ATTGTGCCAAGAGTGAGGGAC	0.607		NaN											0	0	0	0.002299	0	20	150									
TOR3A	64222	broad.mit.edu	37	1	179054980	179054980	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:179054980C>T	uc001gmd.2	+	3	743	c.591C>T	c.(589-591)TTC>TTT	p.F197F	TOR3A_uc010pnd.1_Intron	NM_022371	NP_071766	Q9H497	TOR3A_HUMAN	torsin family 3, member A precursor	197					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum	ATP binding			pancreas(1)	1						TCAGGATGTTCATCGCCACGT	0.592		NaN											0	0	0	0.007413	0	19	139									
TDRD5	163589	broad.mit.edu	37	1	179600039	179600039	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:179600039G>A	uc001gnf.1	+	7	1360	c.1110G>A	c.(1108-1110)AAG>AAA	p.K370K	TDRD5_uc010pnp.1_Silent_p.K370K|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	370	Lotus/OST-HTH 3.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATGCGGATAAGAAGCCTCTAC	0.413		NaN											0	0	0	0.008291	0	4	84									
TOR1AIP1	26092	broad.mit.edu	37	1	179883175	179883175	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:179883175C>G	uc001gnq.2	+	9	1168	c.950C>G	c.(949-951)TCA>TGA	p.S317*		NM_015602	NP_056417	Q5JTV8	TOIP1_HUMAN	lamina-associated polypeptide 1B	317	Nuclear (Potential).					integral to membrane|nuclear inner membrane				breast(1)|central_nervous_system(1)	2						CAGTCACCATCAACCTCCAGC	0.303		NaN											0	0	0	0.001984	0	4	52									
HMCN1	83872	broad.mit.edu	37	1	186037086	186037086	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:186037086G>A	uc001grq.1	+	50	8055	c.7826G>A	c.(7825-7827)TGG>TAG	p.W2609*		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2609	Ig-like C2-type 24.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ACCATCACCTGGTTTAAGGAT	0.428		NaN											0	0	0	0.002299	0	16	62									
TPR	7175	broad.mit.edu	37	1	186322838	186322838	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:186322838C>T	uc001grv.2	-	18	2613	c.2316G>A	c.(2314-2316)GAG>GAA	p.E772E		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	772	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CAGCTAGCTTCTCATTTGCTC	0.363		NaN	T	NTRK1	papillary thyroid								0	0	0	0.00278	0	17	135									
FAM5C	339479	broad.mit.edu	37	1	190250836	190250836	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:190250836C>T	uc001gse.1	-	3	513	c.281G>A	c.(280-282)AGA>AAA	p.R94K	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	94						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAGGAAATTTCTTCTCTCAAC	0.398		NaN											0	0	0	0.004672	0	3	9									
PHLDA3	23612	broad.mit.edu	37	1	201437671	201437671	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:201437671C>T	uc001gwq.2	-	1	629	c.244G>A	c.(244-246)GAG>AAG	p.E82K	PHLDA3_uc009wzx.2_5'UTR	NM_012396	NP_036528	Q9Y5J5	PHLA3_HUMAN	pleckstrin homology-like domain, family A,	82	PH.				anatomical structure morphogenesis|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of protein kinase B signaling cascade	cytoplasm|intracellular membrane-bounded organelle|plasma membrane	identical protein binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-5-phosphate binding				0						AAGTCGATCTCGCCGCCCCCT	0.652		NaN											0	0	0	0.00361	0	62	139									
RNPEP	6051	broad.mit.edu	37	1	201965372	201965372	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:201965372G>A	uc001gxd.2	+	4	864	c.835G>A	c.(835-837)GGA>AGA	p.G279R	RNPEP_uc001gxe.2_5'UTR|RNPEP_uc001gxf.2_Missense_Mutation_p.G148R	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	279					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		GAAGCTTTTTGGACCTTATGT	0.493		NaN											0	0	0	0.008871	0	13	147									
PPP1R15B	84919	broad.mit.edu	37	1	204380470	204380470	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:204380470A>G	uc001hav.3	-	1	475	c.70T>C	c.(70-72)TTT>CTT	p.F24L		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	24					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			CGAGGGAAAAAGGGTGGCCAG	0.627		NaN											0	0	0	0.001168	0	4	117									
SLC45A3	85414	broad.mit.edu	37	1	205628553	205628553	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:205628553C>A	uc001hda.1	-	5	1810	c.1471G>T	c.(1471-1473)GAC>TAC	p.D491Y	SLC45A3_uc010prn.1_Intron|SLC45A3_uc010pro.1_Intron|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	491					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			ATGGCGAGGTCCAGGCAGATG	0.642		NaN	T	ETV1|ETV5|ELK4|ERG	prostate 						OREG0014161	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	1	0	2.32416e-17	0.002299	2.50175e-17	18	46									
AVPR1B	553	broad.mit.edu	37	1	206224493	206224493	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:206224493C>G	uc001hds.2	+	1	211	c.53C>G	c.(52-54)TCT>TGT	p.S18C		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	18	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	GGCACCCTCTCTGCCCCCAAT	0.652		NaN											0	0	0	0.00361	0	109	506									
DYRK3	8444	broad.mit.edu	37	1	206821558	206821558	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:206821558G>C	uc001hej.2	+	3	1183	c.1015G>C	c.(1015-1017)GAA>CAA	p.E339Q	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.E319Q	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	339	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TCTGAAGCCAGAAAACATTCT	0.468		NaN											0	0	0	0.00499	0	14	80									
DYRK3	8444	broad.mit.edu	37	1	206821678	206821678	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:206821678G>C	uc001hej.2	+	3	1303	c.1135G>C	c.(1135-1137)GAA>CAA	p.E379Q	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.E359Q	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	379	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CAGAGCTCCAGAAATCATCTT	0.488		NaN											0	0	0	0.00245	0	12	65									
DYRK3	8444	broad.mit.edu	37	1	206821905	206821905	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:206821905G>A	uc001hej.2	+	3	1530	c.1362G>A	c.(1360-1362)GTG>GTA	p.V454V	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Silent_p.V434V	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	454	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			ACTGCTCTGTGACTACCCAGG	0.552		NaN											0	0	0	0.011902	0	35	372									
CR1	1378	broad.mit.edu	37	1	207679266	207679266	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:207679266G>A	uc001hfy.2	+	2	279	c.139G>A	c.(139-141)GAA>AAA	p.E47K	CR1_uc009xcl.1_Missense_Mutation_p.E47K|CR1_uc001hfx.2_Missense_Mutation_p.E47K|CR1_uc010psg.1_Missense_Mutation_p.E47K|CR1_uc009xcj.1_Missense_Mutation_p.E47K|CR1_uc009xck.1_Missense_Mutation_p.E47K	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	47	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CAATGCCCCAGAATGGCTTCC	0.373		NaN											0	0	0	0.006122	0	15	58									
IRF6	3664	broad.mit.edu	37	1	209968639	209968639	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:209968639G>A	uc001hhq.1	-	5	767	c.504C>T	c.(502-504)ATC>ATT	p.I168I	IRF6_uc010psm.1_Silent_p.I73I|IRF6_uc009xct.1_Silent_p.I168I	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	168					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		ACTCACCATTGATGTTCAGGA	0.488		NaN								HNSCC(57;0.16)			0	0	0	0.00361	0	40	141									
USH2A	7399	broad.mit.edu	37	1	215916588	215916588	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:215916588G>A	uc001hku.1	-	59	11866	c.11479C>T	c.(11479-11481)CAA>TAA	p.Q3827*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3827	Fibronectin type-III 23.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGGGTGGATTGATGATGACCA	0.438		NaN								HNSCC(13;0.011)			0	0	0	0.011902	0	34	113									
PARP1	142	broad.mit.edu	37	1	226555291	226555291	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:226555291C>T	uc001hqd.3	-	17	2467	c.2296G>A	c.(2296-2298)GAC>AAC	p.D766N		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	766	PARP alpha-helical.				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		AGCAGGTTGTCAAGCATTTCC	0.512		NaN						Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					0	0	0	0.002836	0	25	73									
PARP1	142	broad.mit.edu	37	1	226567866	226567866	+	Splice_Site	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:226567866C>G	uc001hqd.3	-	10	1472	c.1301_splice	c.e10-1	p.K434_splice		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1						cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TCCACCTCCTCTGTTCAAATT	0.388		NaN						Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					0	0	0	0.009096	0	3	26									
WNT3A	89780	broad.mit.edu	37	1	228210479	228210479	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:228210479G>T	uc001hrq.1	+	2	261	c.183G>T	c.(181-183)GAG>GAT	p.E61D	WNT3A_uc001hrp.1_Missense_Mutation_p.E61D	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	61					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				ACTACGTGGAGATCATGCCCA	0.652		NaN											1	0	9.65021e-13	0.010818	1.02851e-12	26	111									
OBSCN	84033	broad.mit.edu	37	1	228466439	228466439	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:228466439G>A	uc009xez.1	+	26	6953	c.6909G>A	c.(6907-6909)GAG>GAA	p.E2303E	OBSCN_uc001hsn.2_Silent_p.E2303E|OBSCN_uc001hsp.1_Silent_p.E2E|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2303	Ig-like 23.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TTGCCATGGAGAAGCACCGCG	0.667		NaN											0	0	0	0.00361	0	40	139									
SIPA1L2	57568	broad.mit.edu	37	1	232615474	232615474	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:232615474C>T	uc001hvg.2	-	5	2142	c.1984G>A	c.(1984-1986)GAT>AAT	p.D662N		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	662	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CCCGTGGAATCAGCTGAAAAC	0.398		NaN											0	0	0	0.001368	0	11	39									
TOMM20	9804	broad.mit.edu	37	1	235292007	235292007	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:235292007G>A	uc001hwl.2	-	1	250	c.24C>T	c.(22-24)ATC>ATT	p.I8I	SNORA14B_uc001hwm.1_5'Flank	NM_014765	NP_055580	Q15388	TOM20_HUMAN	translocase of outer mitochondrial membrane 20	8	Helical; (Potential).				protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane translocase complex	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|unfolded protein binding				0	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;6.33e-05)|Epithelial(3;8.26e-05)			CACCGGCGGCGATGGCGCTGT	0.607		NaN											0	0	0	0.00361	0	72	168									
ARID4B	51742	broad.mit.edu	37	1	235345386	235345386	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:235345386C>T	uc001hwq.2	-	20	3346	c.2848G>A	c.(2848-2850)GAG>AAG	p.E950K	ARID4B_uc001hwr.2_Missense_Mutation_p.E864K|ARID4B_uc001hws.3_Missense_Mutation_p.E864K|ARID4B_uc001hwp.2_RNA|ARID4B_uc001hwt.3_Missense_Mutation_p.E631K	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	950					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			GCTGCAGCCTCAGTATCAGAG	0.517		NaN											0	0	0	0.004007	0	14	59									
LYST	1130	broad.mit.edu	37	1	235920623	235920623	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:235920623G>A	uc001hxj.2	-	24	7192	c.7017C>T	c.(7015-7017)CTC>CTT	p.L2339L		NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2339					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GGTGGTTAACGAGGACCAAAA	0.333		NaN							Chediak-Higashi_syndrome				0	0	0	0.010729	0	9	62									
NID1	4811	broad.mit.edu	37	1	236212147	236212147	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:236212147C>T	uc001hxo.2	-	2	470	c.368G>A	c.(367-369)CGA>CAA	p.R123Q	NID1_uc009xgd.2_Missense_Mutation_p.R123Q	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	123	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TAAGTCTTCTCGATAATAAAC	0.567		NaN											0	0	0	0.004656	0	26	74									
CEP170	9859	broad.mit.edu	37	1	243328189	243328189	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:243328189C>T	uc001hzs.2	-	13	3481	c.3073G>A	c.(3073-3075)GAT>AAT	p.D1025N	CEP170_uc001hzt.2_Missense_Mutation_p.D927N|CEP170_uc001hzu.2_Missense_Mutation_p.D927N|CEP170_uc001hzv.1_Missense_Mutation_p.D403N	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	1025	Targeting to microtubules.					centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			GTTTGGTCATCATCTGTTAAG	0.423		NaN											0	0	0	0.006214	0	8	41									
PPPDE1	51029	broad.mit.edu	37	1	244868944	244868944	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:244868944G>A	uc001iao.2	+	5	702	c.438G>A	c.(436-438)CCG>CCA	p.P146P	PPPDE1_uc001iap.2_Silent_p.P113P|PPPDE1_uc001iaq.1_RNA	NM_016076	NP_057160	Q9BSY9	PPDE1_HUMAN	PPPDE peptidase domain containing 1	146	PPPDE peptidase.									breast(3)	3						GTTGCCTCCCGAAGGAGTGGC	0.537		NaN											0	0	0	0.00361	0	38	129									
NLRP3	114548	broad.mit.edu	37	1	247587980	247587980	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:247587980C>T	uc001icr.2	+	5	1373	c.1235C>T	c.(1234-1236)CCC>CTC	p.P412L	NLRP3_uc001ics.2_Missense_Mutation_p.P412L|NLRP3_uc001icu.2_Missense_Mutation_p.P412L|NLRP3_uc001icw.2_Missense_Mutation_p.P412L|NLRP3_uc001icv.2_Missense_Mutation_p.P412L|NLRP3_uc010pyw.1_Missense_Mutation_p.P410L|NLRP3_uc001ict.1_Missense_Mutation_p.P410L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	412	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGCTTCATCCCCCTGGTCTGC	0.542		NaN											0	0	0	0.001168	0	5	91									
SH3BP5L	80851	broad.mit.edu	37	1	249106422	249106422	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:249106422G>A	uc001iew.1	-	7	1411	c.859C>T	c.(859-861)CGG>TGG	p.R287W	SH3BP5L_uc010pzp.1_Missense_Mutation_p.R180W|SH3BP5L_uc010pzq.1_Missense_Mutation_p.R255W|SH3BP5L_uc001iev.1_Missense_Mutation_p.R168W	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	287											0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			GAGGAGCGCCGAGGGCCCAGG	0.721		NaN											0	0	0	0.00308	0	5	39									
GDI2	2665	broad.mit.edu	37	10	5810189	5810189	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:5810189G>C	uc001iil.3	-	8	1269	c.978C>G	c.(976-978)GTC>GTG	p.V326V	GDI2_uc001iim.3_Silent_p.V281V|GDI2_uc009xid.2_Silent_p.V330V	NM_001494	NP_001485	P50395	GDIB_HUMAN	GDP dissociation inhibitor 2 isoform 1	326					protein transport|small GTPase mediated signal transduction	cell surface|cytosol|membrane	protein binding|Rab GDP-dissociation inhibitor activity				0						ACTTTCGATTGACTTGGTTCT	0.408		NaN											0	0	0	0.012319	0	17	89									
NMT2	9397	broad.mit.edu	37	10	15175327	15175327	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:15175327C>G	uc001inz.1	-	4	511	c.427G>C	c.(427-429)GAT>CAT	p.D143H	NMT2_uc001ioa.1_Missense_Mutation_p.D130H|NMT2_uc009xjo.1_Missense_Mutation_p.D143H|NMT2_uc010qbz.1_5'UTR	NM_004808	NP_004799	O60551	NMT2_HUMAN	N-myristoyltransferase 2	143					N-terminal protein myristoylation|protein lipoylation	Golgi apparatus|plasma membrane	glycylpeptide N-tetradecanoyltransferase activity			ovary(1)	1						TTGTCTTTATCTGGTTCAATT	0.398		NaN											0	0	0	0.00245	0	10	85									
VIM	7431	broad.mit.edu	37	10	17276805	17276805	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:17276805C>T	uc001iou.2	+	6	1409	c.996C>T	c.(994-996)GCC>GCT	p.A332A	VIM_uc001iov.1_Silent_p.A332A|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Silent_p.A332A|VIM_uc001ioy.1_Silent_p.A332A|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Intron|VIM_uc001ipc.1_Silent_p.A332A	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	332	Rod.|Coil 2.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						AAGTGGATGCCCTTAAAGGAA	0.517		NaN											0	0	0	0.000602	0	4	48									
C10orf140	387640	broad.mit.edu	37	10	21804708	21804708	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:21804708G>A	uc009xkd.2	-	4	4297	c.2044C>T	c.(2044-2046)CTG>TTG	p.L682L	uc001iqp.1_Intron	NM_207371	NP_997254	Q1XH10	DLN1_HUMAN	hypothetical protein LOC387640	601						nucleus	nucleotide binding			ovary(1)	1						ATATTGTGCAGAAATGGCAAT	0.433		NaN											0	0	0	0.001984	0	6	48									
ARMC3	219681	broad.mit.edu	37	10	23321936	23321936	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:23321936G>A	uc001irm.3	+	18	2476	c.2393G>A	c.(2392-2394)CGA>CAA	p.R798Q	ARMC3_uc010qcv.1_Missense_Mutation_p.R791Q|ARMC3_uc010qcw.1_Missense_Mutation_p.R535Q	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	798							binding				0						TTCTACCATCGAGCTTTGCTT	0.363		NaN											0	0	0	0.004482	0	5	21									
KIAA1462	57608	broad.mit.edu	37	10	30317490	30317490	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:30317490C>G	uc001iux.2	-	2	1646	c.1587G>C	c.(1585-1587)GTG>GTC	p.V529V	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.V391V|KIAA1462_uc009xle.1_Silent_p.V529V	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	529										ovary(4)	4						GGCTGCCTCTCACATCAGGCC	0.612		NaN											0	0	0	0.00623	0	32	217									
LYZL2	119180	broad.mit.edu	37	10	30915075	30915075	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:30915075C>T	uc001ivk.2	-	3	408	c.395G>A	c.(394-396)GGA>GAA	p.G132E		NM_183058	NP_898881	Q7Z4W2	LYZL2_HUMAN	lysozyme-like 2	86					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Prostate(175;0.151)				CTTCAGCTTTCCGCGTCTGCA	0.572		NaN											0	0	0	0.012319	0	17	139									
PARD3	56288	broad.mit.edu	37	10	34420503	34420503	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:34420503G>C	uc010qej.1	-	23	3437	c.3437C>G	c.(3436-3438)TCA>TGA	p.S1146*	PARD3_uc010qek.1_Nonsense_Mutation_p.S1143*|PARD3_uc010qel.1_Nonsense_Mutation_p.S1109*|PARD3_uc010qem.1_Nonsense_Mutation_p.S1130*|PARD3_uc010qen.1_Nonsense_Mutation_p.S1100*|PARD3_uc010qeo.1_Nonsense_Mutation_p.S1063*|PARD3_uc010qep.1_Nonsense_Mutation_p.S1056*|PARD3_uc010qeq.1_Nonsense_Mutation_p.S1034*	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1146					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				GCTAGGAGTTGATCTGTTACT	0.423		NaN											0	0	0	0.003163	0	13	82									
RBP3	5949	broad.mit.edu	37	10	48389979	48389979	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:48389979C>G	uc001jez.2	-	1	1013	c.899G>C	c.(898-900)GGG>GCG	p.G300A		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	300	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGGCAGCACCCCGCTGCCCTC	0.677		NaN											0	0	0	0.008291	0	8	34									
ERCC6	2074	broad.mit.edu	37	10	50740821	50740821	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:50740821C>T	uc001jhs.3	-	2	344	c.190G>A	c.(190-192)GCA>ACA	p.A64T	PGBD3_uc009xoe.2_Missense_Mutation_p.A64T|PGBD3_uc001jhu.2_Missense_Mutation_p.A64T	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	64					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CTCGGAGCTGCTGATGCGCAC	0.607		NaN						Direct_reversal_of_damage|NER					0	0	0	0.003954	0	24	76									
ANK3	288	broad.mit.edu	37	10	61833285	61833285	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:61833285C>G	uc001jky.2	-	37	7546	c.7354G>C	c.(7354-7356)GAG>CAG	p.E2452Q	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2452					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCTGACAACTCATCGTCATGG	0.403		NaN											0	0	0	0.00308	0	8	39									
NEUROG3	50674	broad.mit.edu	37	10	71332658	71332658	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:71332658C>T	uc001jpp.2	-	2	300	c.142G>A	c.(142-144)GAG>AAG	p.E48K		NM_020999	NP_066279	Q9Y4Z2	NGN3_HUMAN	neurogenin 3	48					central nervous system development|endocrine pancreas development|peripheral nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription coactivator activity				0						TCTTCCGCCTCTGCGCAGTTC	0.721		NaN											0	0	0	0.010729	0	10	34									
C10orf54	64115	broad.mit.edu	37	10	73521588	73521588	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:73521588G>A	uc001jsd.2	-	2	419	c.278C>T	c.(277-279)ACG>ATG	p.T93M	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Translation_Start_Site|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_Missense_Mutation_p.T93M	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	93	Ig-like.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GTCCTGGAACGTGAGGTTGCG	0.652		NaN											0	0	0	0.012319	0	20	64									
KCNMA1	3778	broad.mit.edu	37	10	78708987	78708987	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:78708987G>C	uc001jxn.2	-	22	2799	c.2622C>G	c.(2620-2622)CTC>CTG	p.L874L	KCNMA1_uc001jxj.2_Silent_p.L820L|KCNMA1_uc001jxk.1_Silent_p.L492L|KCNMA1_uc009xrt.1_Silent_p.L665L|KCNMA1_uc001jxl.1_Silent_p.L499L|KCNMA1_uc001jxo.2_Silent_p.L857L|KCNMA1_uc001jxm.2_Silent_p.L816L|KCNMA1_uc001jxq.2_Silent_p.L819L	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	874	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CAATGTGCTTGAGCTCATGGT	0.527		NaN											0	0	0	0.004289	0	31	95									
IFIT2	3433	broad.mit.edu	37	10	91066371	91066371	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:91066371C>T	uc009xts.2	+	2	833	c.658C>T	c.(658-660)CAT>TAT	p.H220Y	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	220					negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				TCTGAAGCTTCATAAGATGCG	0.502		NaN											0	0	0	0.001984	0	4	39									
CC2D2B	387707	broad.mit.edu	37	10	97772423	97772423	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:97772423C>G	uc001kll.2	+	4	454	c.255C>G	c.(253-255)ATC>ATG	p.I85M	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Missense_Mutation_p.I85M	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	85										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		CAAGATATATCAAGGCATTAA	0.299		NaN											0	0	0	0.008291	0	9	26									
TLL2	7093	broad.mit.edu	37	10	98205917	98205917	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:98205917C>G	uc001kml.1	-	3	521	c.295G>C	c.(295-297)GAA>CAA	p.E99Q	TLL2_uc009xvf.1_Missense_Mutation_p.E99Q	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	99					cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		GCCTGCTCTTCAAGCCCACCT	0.557		NaN											0	0	0	0.007291	0	29	92									
PI4K2A	55361	broad.mit.edu	37	10	99416092	99416092	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:99416092G>A	uc001kog.1	+	3	744	c.687G>A	c.(685-687)GTG>GTA	p.V229V	PI4K2A_uc010qoy.1_Silent_p.V199V|PI4K2A_uc009xvw.1_5'UTR	NM_018425	NP_060895	Q9BTU6	P4K2A_HUMAN	phosphatidylinositol 4-kinase type 2 alpha	229	PI3K/PI4K.				phosphatidylinositol biosynthetic process	cytoplasm|integral to plasma membrane|membrane raft	1-phosphatidylinositol 4-kinase activity|ATP binding|magnesium ion binding			lung(1)|skin(1)	2		Colorectal(252;0.162)		Epithelial(162;1.24e-10)|all cancers(201;1.2e-08)		TTGACCGAGTGAAGTCCAGGG	0.493		NaN											0	0	0	0.003163	0	13	74									
PYROXD2	84795	broad.mit.edu	37	10	100174797	100174797	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:100174797C>T	uc001kpc.2	-	1	182	c.96G>A	c.(94-96)AAG>AAA	p.K32K	PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Silent_p.K32K	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	32							oxidoreductase activity			central_nervous_system(1)	1						CATACTCAGGCTTCAGACCTC	0.617		NaN											0	0	0	0.00361	0	67	249									
ENTPD7	57089	broad.mit.edu	37	10	101464399	101464399	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:101464399G>A	uc001kqa.3	+	13	1952	c.1774G>A	c.(1774-1776)GAA>AAA	p.E592K	ENTPD7_uc009xwl.2_Missense_Mutation_p.E594K	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	592	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		GCTGTGGCTTGAAGAGGTGGT	0.572		NaN											0	0	0	0.003163	0	12	20									
PKD2L1	9033	broad.mit.edu	37	10	102058407	102058407	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:102058407C>G	uc001kqx.1	-	4	1026	c.643G>C	c.(643-645)GAC>CAC	p.D215H	PKD2L1_uc009xwm.1_Missense_Mutation_p.D168H	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	215	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		TCCCGGAAGTCTTCATGCACC	0.542		NaN											0	0	0	0.00361	0	53	117									
CNNM2	54805	broad.mit.edu	37	10	104678579	104678579	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:104678579G>A	uc001kwm.2	+	1	466	c.342G>A	c.(340-342)ACG>ACA	p.T114T	CNNM2_uc001kwn.2_Silent_p.T114T|CNNM2_uc001kwl.2_Silent_p.T114T	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	114					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		ATAACGAGACGTGGTCCCGCA	0.547		NaN											0	0	0	0.001855	0	10	32									
PDCD11	22984	broad.mit.edu	37	10	105179396	105179396	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:105179396G>A	uc001kwy.1	+	16	2295	c.2208G>A	c.(2206-2208)GTG>GTA	p.V736V		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	736	S1 motif 8.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		TTGGTTTTGTGAAGAGCATCA	0.498		NaN											0	0	0	0.002299	0	19	73									
CALHM2	51063	broad.mit.edu	37	10	105207266	105207266	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:105207266G>C	uc001kwz.2	-	3	1001	c.615C>G	c.(613-615)CTC>CTG	p.L205L	CALHM2_uc001kxa.2_Silent_p.L205L|CALHM2_uc001kxc.2_3'UTR|CALHM2_uc001kxb.2_Silent_p.L205L	NM_015916	NP_057000	Q9HA72	CAHM2_HUMAN	calcium homeostasis modulator 2	205	Helical; (Potential).					integral to membrane				skin(1)	1						AGTAATGCTTGAGGCACTTGG	0.617		NaN											0	0	0	0.008871	0	18	52									
C10orf79	80217	broad.mit.edu	37	10	105942240	105942240	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:105942240G>C	uc001kxw.2	-	17	2289	c.2173C>G	c.(2173-2175)CTG>GTG	p.L725V	C10orf79_uc009xxq.2_Missense_Mutation_p.L33V|C10orf79_uc001kxx.3_Missense_Mutation_p.L726V	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	725											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TAATAGTCCAGAATTTCACTG	0.348		NaN											0	0	0	0.00308	0	7	38									
PDZD8	118987	broad.mit.edu	37	10	119044035	119044035	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:119044035C>T	uc001lde.1	-	5	2408	c.2209G>A	c.(2209-2211)GAA>AAA	p.E737K		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	737					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		GCCACATCTTCAAGTTTTAAA	0.453		NaN											0	0	0	0.004482	0	9	30									
FAM175B	23172	broad.mit.edu	37	10	126523473	126523473	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr10:126523473C>T	uc001lib.3	+	9	1226	c.1181C>T	c.(1180-1182)TCA>TTA	p.S394L		NM_032182	NP_115558	Q15018	F175B_HUMAN	hypothetical protein LOC23172	394						BRISC complex	polyubiquitin binding				0						TACTCACATTCAAAGGATTCT	0.463		NaN											0	0	0	0.00499	0	14	47									
RIC8A	60626	broad.mit.edu	37	11	209946	209946	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:209946C>T	uc001log.2	+	3	997	c.672C>T	c.(670-672)ATC>ATT	p.I224I	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Silent_p.I224I|RIC8A_uc001loh.2_Silent_p.I217I	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	224						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CCATGGAGATCCTCAAAGTGC	0.577		NaN											0	0	0	0.010729	0	11	72									
MUC5B	727897	broad.mit.edu	37	11	1159327	1159327	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:1159327C>T	uc009ycr.1	+	12	1430	c.1304C>T	c.(1303-1305)TCT>TTT	p.S435F		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	426	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGTACCTGCTCTGTGCTTGGA	0.637		NaN											0	0	0	0.010504	0	19	105									
MUC5B	727897	broad.mit.edu	37	11	1272547	1272547	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:1272547C>T	uc009ycr.1	+	52	15529	c.15403C>T	c.(15403-15405)CTG>TTG	p.L5135L	MUC5B_uc001ltb.2_Silent_p.L4816L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4758	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTCCTCCACTCTGGGGACGAC	0.627		NaN											0	0	0	0.002299	0	20	130									
TOLLIP	54472	broad.mit.edu	37	11	1298324	1298324	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:1298324C>T	uc001lte.2	-	6	881	c.770G>A	c.(769-771)CGA>CAA	p.R257Q	TOLLIP_uc001ltd.2_Missense_Mutation_p.R188Q|TOLLIP_uc009ycu.2_Missense_Mutation_p.R196Q|TOLLIP_uc001ltf.2_Missense_Mutation_p.R207Q	NM_019009	NP_061882	Q9H0E2	TOLIP_HUMAN	toll interacting protein	257	CUE.				cell-cell signaling|inflammatory response|innate immune response|intracellular signal transduction|leukocyte activation|phosphorylation	cytosol|interleukin-1 receptor complex|interleukin-18 receptor complex	kinase binding|signal transducer activity|Toll-like receptor binding				0		all_cancers(49;7.62e-05)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.00152)|Lung(200;0.09)|LUSC - Lung squamous cell carcinoma(625;0.107)		CTTGTTCCCTCGCTGGGCTTC	0.627		NaN											0	0	0	0.009535	0	24	163									
SYT9	143425	broad.mit.edu	37	11	7334658	7334658	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:7334658C>T	uc001mfe.2	+	3	767	c.530C>T	c.(529-531)TCA>TTA	p.S177L	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_Intron	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	177	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CTCAACTTGTCAAACCCGGAC	0.378		NaN											0	0	0	0.000602	0	3	33									
PPFIBP2	8495	broad.mit.edu	37	11	7647116	7647116	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:7647116G>C	uc001mfj.3	+	8	1208	c.820G>C	c.(820-822)GAG>CAG	p.E274Q	PPFIBP2_uc010rbb.1_Missense_Mutation_p.E197Q|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.E197Q|PPFIBP2_uc010rbd.1_Missense_Mutation_p.E116Q|PPFIBP2_uc010rbe.1_Missense_Mutation_p.E162Q|PPFIBP2_uc001mfl.3_Missense_Mutation_p.E131Q	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	274	Potential.				cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		GAGTCACACAGAGAGAGGTGA	0.507		NaN											0	0	0	0.009096	0	3	38									
NLRP10	338322	broad.mit.edu	37	11	7982410	7982410	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:7982410C>T	uc001mfv.1	-	2	766	c.749G>A	c.(748-750)GGC>GAC	p.G250D		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	250	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTCATCAAAGCCATCCAGGAT	0.527		NaN											0	0	0	0.001168	0	4	51									
SCUBE2	57758	broad.mit.edu	37	11	9051467	9051467	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:9051467C>T	uc001mhh.1	-	18	2460	c.2380G>A	c.(2380-2382)GAC>AAC	p.D794N	SCUBE2_uc001mhi.1_Missense_Mutation_p.D766N|SCUBE2_uc001mhj.1_Missense_Mutation_p.D668N	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	794						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		CCATCAAAGTCAGTCGTAGTA	0.448		NaN											0	0	0	0.00632	0	22	156									
AMPD3	272	broad.mit.edu	37	11	10500089	10500089	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:10500089A>G	uc001mio.1	+	3	573	c.238A>G	c.(238-240)ATG>GTG	p.M80V	AMPD3_uc010rbz.1_Intron|AMPD3_uc001min.1_Missense_Mutation_p.M89V|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfx.1_Missense_Mutation_p.M80V|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.M87V|AMPD3_uc009yfy.2_Missense_Mutation_p.M80V	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	80					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		AAGTTTCAAGATGATTCGGTC	0.532		NaN											0	0	0	0.00361	0	88	232									
EIF4G2	1982	broad.mit.edu	37	11	10823911	10823911	+	Silent	SNP	G	G	A	rs142114099		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:10823911G>A	uc001mjc.2	-	12	1485	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	EIF4G2_uc001mjb.2_Silent_p.F150F|EIF4G2_uc009ygf.2_Silent_p.F150F|EIF4G2_uc001mjd.2_Silent_p.F356F|EIF4G2_uc001mjf.1_Silent_p.F150F|SNORD97_uc009yge.2_5'Flank	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	356					cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TGGGTGGCATGAACGGTCCCT	0.428		NaN											0	0	0	0.00278	0	21	130									
SPON1	10418	broad.mit.edu	37	11	14280896	14280896	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:14280896G>A	uc001mle.2	+	13	2101	c.1563G>A	c.(1561-1563)ATG>ATA	p.M521I		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	521	TSP type-1 2.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GCATGGGCATGAGGTCCCGGG	0.627		NaN											0	0	0	0.008291	0	7	46									
SPON1	10418	broad.mit.edu	37	11	14280908	14280908	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:14280908G>A	uc001mle.2	+	13	2113	c.1575G>A	c.(1573-1575)GAG>GAA	p.E525E		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	525	TSP type-1 2.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GGTCCCGGGAGAGGTATGTGA	0.632		NaN											0	0	0	0.010729	0	7	46									
SPON1	10418	broad.mit.edu	37	11	14282247	14282247	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:14282247G>C	uc001mle.2	+	15	2483	c.1945G>C	c.(1945-1947)GAC>CAC	p.D649H		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	649	TSP type-1 4.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		AGAACTTGGAGACTGCAATGA	0.577		NaN											0	0	0	0.003954	0	20	76									
COPB1	1315	broad.mit.edu	37	11	14487843	14487843	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:14487843C>G	uc001mli.2	-	17	2582	c.2275G>C	c.(2275-2277)GAA>CAA	p.E759Q	COPB1_uc001mlg.2_Missense_Mutation_p.E759Q|COPB1_uc001mlh.2_Missense_Mutation_p.E759Q	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	759					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						GTAGCTAGTTCTAATGTGCAA	0.383		NaN											0	0	0	0.004656	0	22	96									
TPH1	7166	broad.mit.edu	37	11	18057567	18057567	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:18057567C>T	uc001mnp.2	-	2	266	c.240G>A	c.(238-240)CTG>CTA	p.L80L	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	80	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	TATGAGACTTCAGCAGATGAA	0.318		NaN											0	0	0	0.00308	0	7	32									
LRP4	4038	broad.mit.edu	37	11	46917828	46917828	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:46917828C>T	uc001ndn.3	-	9	1127	c.981G>A	c.(979-981)CAG>CAA	p.Q327Q		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	327	Extracellular (Potential).|LDL-receptor class A 8.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		ACAGCTTCCTCTGCCCAATGC	0.597		NaN											0	0	0	0.00333	0	23	122									
MTCH2	23788	broad.mit.edu	37	11	47660529	47660529	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:47660529G>C	uc010rho.1	-	2	351	c.162C>G	c.(160-162)CTC>CTG	p.L54L	MTCH2_uc001nge.2_5'UTR|MTCH2_uc010rhp.1_5'UTR	NM_014342	NP_055157	Q9Y6C9	MTCH2_HUMAN	mitochondrial carrier 2	54	Solcar 1.				transport	integral to membrane|mitochondrial inner membrane					0						CATAACTAAAGAGACCAGGAA	0.383		NaN											0	0	0	0.00499	0	13	43									
SSRP1	6749	broad.mit.edu	37	11	57100260	57100260	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:57100260G>A	uc001njt.2	-	6	874	c.607C>T	c.(607-609)CGG>TGG	p.R203W	SSRP1_uc010rjq.1_Missense_Mutation_p.R203W	NM_003146	NP_003137	Q08945	SSRP1_HUMAN	structure specific recognition protein 1	203					DNA repair|DNA replication|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|cytoplasm|nucleoplasm	DNA binding|protein binding			ovary(2)	2						TGCAGCTCCCGGAAGATGCAG	0.527		NaN											0	0	0	0.001984	0	5	71									
MS4A1	931	broad.mit.edu	37	11	60233575	60233575	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:60233575C>T	uc001npp.2	+	6	934	c.518C>T	c.(517-519)TCT>TTT	p.S173F	MS4A1_uc001npq.2_Missense_Mutation_p.S173F|MS4A1_uc009yna.2_Missense_Mutation_p.S173F|MS4A1_uc009ymz.2_Missense_Mutation_p.S173F|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	173	Epitope 3 (recognized by antibodies, including Rituximab).				B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	GCTAATCCCTCTGAGAAAAAC	0.358		NaN											0	0	0	0.009535	0	29	72									
VWCE	220001	broad.mit.edu	37	11	61026481	61026481	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:61026481G>A	uc001nra.2	-	20	2813	c.2534C>T	c.(2533-2535)TCA>TTA	p.S845L	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	845	Pro-rich.					extracellular region	calcium ion binding			ovary(1)	1						AGGCCCTGGTGAGAGTCGAGG	0.642		NaN											0	0	0	0.010729	0	10	32									
C11orf66	220004	broad.mit.edu	37	11	61252187	61252187	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:61252187G>C	uc001nru.1	+	5	534	c.409G>C	c.(409-411)GAG>CAG	p.E137Q	C11orf66_uc009ynq.1_Missense_Mutation_p.E137Q	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	137										ovary(1)	1						CGACACCCAGGAGCACGGGCC	0.537		NaN											0	0	0	0.004482	0	5	30									
C11orf9	745	broad.mit.edu	37	11	61545871	61545871	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:61545871G>A	uc001nsc.1	+	14	2019	c.1923G>A	c.(1921-1923)GTG>GTA	p.V641V	C11orf9_uc001nse.1_Silent_p.V632V|C11orf9_uc010rll.1_Silent_p.V32V	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	641					central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CTCAGGAGGTGAAGGAGATCT	0.537		NaN											0	0	0	0.004656	0	22	182									
C11orf9	745	broad.mit.edu	37	11	61545877	61545877	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:61545877G>A	uc001nsc.1	+	14	2025	c.1929G>A	c.(1927-1929)GAG>GAA	p.E643E	C11orf9_uc001nse.1_Silent_p.E634E|C11orf9_uc010rll.1_Silent_p.E34E	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	643					central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						AGGTGAAGGAGATCTTGCCTG	0.547		NaN											0	0	0	0.007291	0	24	182									
AHNAK	79026	broad.mit.edu	37	11	62296070	62296070	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:62296070A>G	uc001ntl.2	-	5	6119	c.5819T>C	c.(5818-5820)GTG>GCG	p.V1940A	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1940					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CGACACATCCACATCCCCTTT	0.502		NaN											0	0	0	0.004482	0	9	314									
NXF1	10482	broad.mit.edu	37	11	62569489	62569489	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:62569489G>C	uc001nvf.1	-	5	619	c.483C>G	c.(481-483)TTC>TTG	p.F161L	NXF1_uc001nvg.1_Missense_Mutation_p.F161L|NXF1_uc009yog.1_Missense_Mutation_p.F204L|NXF1_uc010rmh.1_Missense_Mutation_p.F24L	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	161	Interaction with THOC4.|RRM.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						CTTCAACGAAGAACTGGGCCC	0.522		NaN											0	0	0	0.00278	0	17	105									
NXF1	10482	broad.mit.edu	37	11	62570909	62570909	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:62570909C>T	uc001nvf.1	-	3	487	c.351G>A	c.(349-351)AAG>AAA	p.K117K	NXF1_uc001nvg.1_Silent_p.K117K|NXF1_uc009yog.1_Silent_p.K160K|NXF1_uc010rmh.1_Intron	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	117	Interaction with THOC4.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						TGAACCAGTTCTTTGAGGTCC	0.473		NaN											0	0	0	0.007291	0	25	185									
STX5	6811	broad.mit.edu	37	11	62575050	62575050	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:62575050G>C	uc001nvh.2	-	11	1113	c.959C>G	c.(958-960)TCA>TGA	p.S320*	NXF1_uc001nvf.1_5'Flank|NXF1_uc001nvg.1_5'Flank|NXF1_uc009yog.1_5'Flank|NXF1_uc010rmh.1_5'Flank|STX5_uc010rmi.1_Nonsense_Mutation_p.S224*|STX5_uc009yoh.2_RNA|STX5_uc001nvi.2_Nonsense_Mutation_p.S266*|STX5_uc010rmj.1_3'UTR|STX5_uc001nvj.2_Nonsense_Mutation_p.S135*	NM_003164	NP_003155	Q13190	STX5_HUMAN	syntaxin 5	320	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				intracellular protein transport|retrograde transport, endosome to Golgi|vesicle targeting	ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|nucleus|SNARE complex	protein N-terminus binding|SNAP receptor activity			ovary(1)|breast(1)	2						GAGGATCTCTGAATGGGCGGC	0.507		NaN											0	0	0	0.010729	0	11	32									
SLC22A10	387775	broad.mit.edu	37	11	63072312	63072312	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:63072312G>A	uc009yor.2	+	9	1757	c.1549G>A	c.(1549-1551)GAA>AAA	p.E517K	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_3'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	517	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CCTCCTACCAGAAACCAAGAA	0.433		NaN											0	0	0	0.001855	0	12	55									
RTN3	10313	broad.mit.edu	37	11	63486675	63486675	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:63486675C>T	uc001nxq.2	+	3	888	c.701C>T	c.(700-702)TCA>TTA	p.S234L	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.S215L|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.S122L|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	234					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TCCAAAGTTTCAGGAGATGAT	0.373		NaN											0	0	0	0.007413	0	13	44									
RTN3	10313	broad.mit.edu	37	11	63486765	63486765	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:63486765C>G	uc001nxq.2	+	3	978	c.791C>G	c.(790-792)TCA>TGA	p.S264*	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Nonsense_Mutation_p.S245*|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Nonsense_Mutation_p.S152*|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	264					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TTTAAAGACTCATATAAGGAG	0.368		NaN											0	0	0	0.006122	0	16	28									
ESRRA	2101	broad.mit.edu	37	11	64082560	64082560	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:64082560C>G	uc001nzq.1	+	6	1007	c.830C>G	c.(829-831)TCA>TGA	p.S277*	ESRRA_uc001nzr.1_Nonsense_Mutation_p.S276*|ESRRA_uc001nzs.1_Nonsense_Mutation_p.S277*|ESRRA_uc009ypn.1_RNA	NM_004451	NP_004442	P11474	ERR1_HUMAN	estrogen-related receptor alpha	277	Ligand binding domain.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein domain specific binding|sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0						GCCCAGCGCTCACTGCCACTG	0.647		NaN											0	0	0	0.006122	0	13	71									
RASGRP2	10235	broad.mit.edu	37	11	64508453	64508453	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:64508453C>T	uc009ypu.2	-	5	565	c.338G>A	c.(337-339)CGA>CAA	p.R113Q	RASGRP2_uc001oat.2_5'Flank|RASGRP2_uc001oau.2_5'UTR|RASGRP2_uc009ypv.2_Missense_Mutation_p.R113Q|RASGRP2_uc009ypw.2_Missense_Mutation_p.R113Q	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	113	N-terminal Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						GCTGTGCCGTCGGTTCCCTTC	0.557		NaN									OREG0004006	type=REGULATORY REGION|Gene=RASGRP2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	0	0	0	0.00245	0	12	66									
PPP2R5B	5526	broad.mit.edu	37	11	64694350	64694350	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:64694350C>T	uc001oby.2	+	3	951	c.366C>T	c.(364-366)ATC>ATT	p.I122I	PPP2R5B_uc001obz.2_Silent_p.I122I	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	122					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						GTGTCCTCATCGAGCCCGTCT	0.662		NaN											0	0	0	0.008291	0	10	76									
SNX15	29907	broad.mit.edu	37	11	64795031	64795031	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:64795031G>A	uc001oci.3	+	4	675	c.22G>A	c.(22-24)GAC>AAC	p.D8N	SNX15_uc009ypy.2_Missense_Mutation_p.D8N|SNX15_uc001ocj.2_Missense_Mutation_p.D8N|SNX15_uc001ock.2_Missense_Mutation_p.D8N	NM_013306	NP_037438	Q9NRS6	SNX15_HUMAN	sorting nexin 15 isoform A	8	PX.				cell communication|intracellular protein transport	cytoplasmic vesicle membrane|cytosol	phosphatidylinositol binding|protein transporter activity			ovary(1)	1						GGCGAAGGATGACTTCCTGCG	0.692		NaN									OREG0021069	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.006999	0	35	236									
SIPA1	6494	broad.mit.edu	37	11	65417656	65417656	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:65417656G>A	uc001ofb.2	+	14	3063	c.2896G>A	c.(2896-2898)GAT>AAT	p.D966N	SIPA1_uc010rom.1_Missense_Mutation_p.D864N|SIPA1_uc001ofd.2_Missense_Mutation_p.D966N	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	966					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						TCCAAAATCTGATGCTGAGTA	0.602		NaN											0	0	0	0.007835	0	34	113									
KDM2A	22992	broad.mit.edu	37	11	67021043	67021043	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:67021043C>G	uc001ojw.2	+	19	3916	c.3052C>G	c.(3052-3054)CAA>GAA	p.Q1018E	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.Q712E|KDM2A_uc001ojz.1_Missense_Mutation_p.Q476E|KDM2A_uc001oka.2_Missense_Mutation_p.Q142E	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	1018					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						CAAGGACCCTCAAATTCGGGA	0.552		NaN											0	0	0	0.006122	0	17	81									
SUV420H1	51111	broad.mit.edu	37	11	67925239	67925239	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:67925239C>G	uc001onm.1	-	11	2830	c.2574G>C	c.(2572-2574)TTG>TTC	p.L858F	SUV420H1_uc009yse.1_Missense_Mutation_p.L444F|SUV420H1_uc001onn.1_Missense_Mutation_p.L686F|SUV420H1_uc009ysf.2_Missense_Mutation_p.L618F	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	858					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CTATTAACCTCAAGCGCTTAG	0.403		NaN											0	0	0	0.001984	0	7	20									
SUV420H1	51111	broad.mit.edu	37	11	67925604	67925604	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:67925604C>T	uc001onm.1	-	11	2465	c.2209G>A	c.(2209-2211)GGA>AGA	p.G737R	SUV420H1_uc009yse.1_Missense_Mutation_p.G323R|SUV420H1_uc001onn.1_Missense_Mutation_p.G565R|SUV420H1_uc009ysf.2_Missense_Mutation_p.G497R	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	737					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						GAGTTCATTCCATCATTCTCT	0.373		NaN											0	0	0	0.006122	0	17	190									
SUV420H1	51111	broad.mit.edu	37	11	67925754	67925754	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:67925754C>A	uc001onm.1	-	11	2315	c.2059G>T	c.(2059-2061)GAC>TAC	p.D687Y	SUV420H1_uc009yse.1_Missense_Mutation_p.D273Y|SUV420H1_uc001onn.1_Missense_Mutation_p.D515Y|SUV420H1_uc009ysf.2_Missense_Mutation_p.D447Y	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	687					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CTAAAGCTGTCTTTTGTTTTG	0.443		NaN											1	0	1.02788e-11	0.00499	1.09461e-11	16	33									
MRGPRD	116512	broad.mit.edu	37	11	68748225	68748225	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:68748225G>A	uc010rqf.1	-	1	231	c.231C>T	c.(229-231)TTC>TTT	p.F77F		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	77	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AAGCCATGCTGAAGAGGAAGA	0.552		NaN											0	0	0	0.008361	0	24	69									
NUMA1	4926	broad.mit.edu	37	11	71725723	71725723	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:71725723C>T	uc001orl.1	-	15	2998	c.2826G>A	c.(2824-2826)GCG>GCA	p.A942A	NUMA1_uc009ysw.1_Silent_p.A505A|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Silent_p.A942A|NUMA1_uc001orn.2_Silent_p.A505A|NUMA1_uc009ysx.1_Silent_p.A942A|NUMA1_uc001oro.1_Silent_p.A942A	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	942	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						CTCCTGCCCTCGCAGGCTCCT	0.642		NaN	T	RARA	APL								0	0	0	0.007291	0	25	95									
FOLR2	2350	broad.mit.edu	37	11	71932542	71932542	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:71932542C>T	uc009ytd.2	+	5	673	c.504C>T	c.(502-504)CTC>CTT	p.L168L	FOLR2_uc009yte.2_Silent_p.L168L|FOLR2_uc001ose.3_Silent_p.L168L|FOLR2_uc009ytf.2_Silent_p.L168L	NM_001113534	NP_001107006	P14207	FOLR2_HUMAN	folate receptor 2 precursor	168					folic acid transport	anchored to membrane|extracellular region|membrane fraction|plasma membrane	folic acid binding|receptor activity			breast(2)|ovary(1)	3					Folic Acid(DB00158)	CTGGGGCTCTCTGCCGCACCT	0.597		NaN											0	0	0	0.00361	0	38	316									
PPME1	51400	broad.mit.edu	37	11	73882471	73882471	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:73882471C>G	uc001ouw.2	+	1	104	c.5C>G	c.(4-6)TCG>TGG	p.S2W	C2CD3_uc001ouu.2_5'Flank|C2CD3_uc001ouv.2_5'Flank	NM_016147	NP_057231	Q9Y570	PPME1_HUMAN	protein phosphatase methylesterase 1	2					protein demethylation		carboxylesterase activity|protein C-terminal methylesterase activity|protein phosphatase 2A binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0	Breast(11;3.29e-05)					CCCTCGATGTCGGCCCTCGAA	0.642		NaN											0	0	0	0.00308	0	8	35									
CHRDL2	25884	broad.mit.edu	37	11	74419417	74419417	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:74419417G>C	uc001ovi.2	-	5	709	c.456C>G	c.(454-456)CTC>CTG	p.L152L	CHRDL2_uc001ovg.2_Silent_p.L36L|CHRDL2_uc001ovh.2_Silent_p.L152L|CHRDL2_uc001ovk.1_Silent_p.L152L			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	152	VWFC 2.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					GGCAGGTTGTGAGGCCGCAGT	0.622		NaN											0	0	0	0.00308	0	5	36									
XRRA1	143570	broad.mit.edu	37	11	74651851	74651851	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:74651851G>A	uc009yub.2	-	3	405	c.73C>T	c.(73-75)CTG>TTG	p.L25L	XRRA1_uc001ovm.2_Intron|XRRA1_uc001ovo.2_Intron|XRRA1_uc001ovq.3_Silent_p.L25L|XRRA1_uc001ovp.3_Intron|XRRA1_uc001ovr.2_Intron	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	25					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						ACGCGAAGCAGATTTCTGGCT	0.498		NaN											0	0	0	0.001168	0	4	14									
PCF11	51585	broad.mit.edu	37	11	82879595	82879595	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:82879595C>T	uc001ozx.3	+	8	2563	c.2218C>T	c.(2218-2220)CAG>TAG	p.Q740*	PCF11_uc010rsu.1_Nonsense_Mutation_p.Q871*	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	740	Gly-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GGATACAAATCAGCGACTTAC	0.433		NaN											0	0	0	0.00333	0	18	67									
DLG2	1740	broad.mit.edu	37	11	83195224	83195224	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:83195224G>A	uc001paj.2	-	17	2229	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	DLG2_uc001pai.2_Intron|DLG2_uc010rsy.1_Intron|DLG2_uc010rsz.1_Intron|DLG2_uc010rta.1_Intron|DLG2_uc001pak.2_Silent_p.F747F|DLG2_uc010rtb.1_Silent_p.F609F|DLG2_uc010rsw.1_Intron|DLG2_uc010rsx.1_Intron	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	642						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TGTAGAATGGGAATTTTCGTG	0.398		NaN											0	0	0	0.004482	0	4	33									
PANX1	24145	broad.mit.edu	37	11	93912933	93912933	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:93912933C>T	uc001per.2	+	4	1096	c.711C>T	c.(709-711)CTC>CTT	p.L237L	PANX1_uc001peq.2_Silent_p.L237L	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	237	Helical; (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ACTTCAGCCTCTCCTCACTCT	0.453		NaN											0	0	0	0.010729	0	12	49									
AMOTL1	154810	broad.mit.edu	37	11	94533394	94533394	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:94533394C>G	uc001pfb.2	+	3	1208	c.1038C>G	c.(1036-1038)GTC>GTG	p.V346V	AMOTL1_uc001pfc.2_Silent_p.V296V	NM_130847	NP_570899	Q8IY63	AMOL1_HUMAN	angiomotin like 1	346						cytoplasm|tight junction	identical protein binding			ovary(1)|breast(1)	2		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				ACGAGATGGTCAAGCCCTACC	0.567		NaN											0	0	0	0.003755	0	31	201									
KIAA1377	57562	broad.mit.edu	37	11	101828992	101828992	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:101828992G>C	uc001pgm.2	+	5	870	c.600G>C	c.(598-600)ATG>ATC	p.M200I	KIAA1377_uc001pgn.2_Missense_Mutation_p.M156I|KIAA1377_uc010run.1_Missense_Mutation_p.M1I|KIAA1377_uc009yxa.1_Missense_Mutation_p.M1I	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	200							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AGAAAGAAATGAATGAAAACA	0.378		NaN											0	0	0	0.004007	0	16	117									
TMEM123	114908	broad.mit.edu	37	11	102272700	102272700	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:102272700G>A	uc001pha.2	-	3	816	c.395C>T	c.(394-396)ACA>ATA	p.T132I	TMEM123_uc009yxc.2_Missense_Mutation_p.T113I	NM_052932	NP_443164	Q8N131	PORIM_HUMAN	transmembrane protein 123 precursor	132	Thr-rich.|Extracellular (Potential).				oncosis	external side of plasma membrane|integral to membrane	receptor activity			breast(2)	2	all_cancers(8;0.00027)|all_epithelial(12;0.0021)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0314)|Lung(13;0.109)|all cancers(10;0.12)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0149)		TACGGTCATTGTGGATGTTGA	0.388		NaN											0	0	0	0.010504	0	16	140									
MMP20	9313	broad.mit.edu	37	11	102479695	102479695	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:102479695C>T	uc001phc.2	-	5	797	c.784G>A	c.(784-786)GAT>AAT	p.D262N		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	262					proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		CCTTTCACATCATCTTTGGGG	0.468		NaN											0	0	0	0.00499	0	11	119									
CASP4	837	broad.mit.edu	37	11	104821781	104821781	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:104821781G>A	uc001pid.1	-	4	490	c.417C>T	c.(415-417)CTC>CTT	p.L139L	CASP4_uc001pib.1_Silent_p.L83L|CASP4_uc009yxg.1_Silent_p.L48L|CASP4_uc010rux.1_Silent_p.L139L	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	139					apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		TGCATATGATGAGAGCCAGGC	0.453		NaN											0	0	0	0.001984	0	5	38									
VPS11	55823	broad.mit.edu	37	11	118948904	118948904	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:118948904C>T	uc010ryx.1	+	12	1825	c.1783C>T	c.(1783-1785)CCC>TCC	p.P595S	VPS11_uc010ryy.1_Missense_Mutation_p.P441S	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	595					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		GGAGTTCATCCCCATCTTTGC	0.527		NaN											0	0	0	0.00632	0	23	260									
MFRP	83552	broad.mit.edu	37	11	119212284	119212284	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:119212284C>T	uc001pwj.2	-	13	1874	c.1714G>A	c.(1714-1716)GAC>AAC	p.D572N	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Missense_Mutation_p.D454N	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:Variant_position_missing_in_Q9BXJ0_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		GCTTCCAGGTCAGCTGCCTCT	0.662		NaN											0	0	0	0.001368	0	9	54									
TECTA	7007	broad.mit.edu	37	11	120996548	120996548	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:120996548C>A	uc010rzo.1	+	7	1741	c.1741C>A	c.(1741-1743)CCA>ACA	p.P581T		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	581					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CCTTGGCATTCCAATTGGAGA	0.592		NaN											1	0	2.0095e-06	0.001984	2.09856e-06	6	52									
C11orf63	79864	broad.mit.edu	37	11	122805215	122805215	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:122805215C>G	uc001pym.2	+	5	1363	c.1066C>G	c.(1066-1068)CAA>GAA	p.Q356E		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	356										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GAATGACCATCAACCTTCCAG	0.448		NaN											0	0	0	0.004482	0	6	24									
ESAM	90952	broad.mit.edu	37	11	124623758	124623758	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr11:124623758G>A	uc001qav.3	-	7	1130	c.957C>T	c.(955-957)CTC>CTT	p.L319L	VSIG2_uc001qas.2_5'Flank|VSIG2_uc001qat.2_5'Flank|ESAM_uc010sao.1_Intron|ESAM_uc001qau.3_Silent_p.L246L|ESAM_uc001qaw.3_RNA|ESAM_uc001qax.3_RNA|ESAM_uc009zbi.2_Missense_Mutation_p.S318F	NM_138961	NP_620411	Q96AP7	ESAM_HUMAN	endothelial cell adhesion molecule precursor	319	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	adherens junction|integral to membrane|tight junction					0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.022)		GGGGTGGCCGGAGGGCTCGTG	0.662		NaN											0	0	0	0.00308	0	6	64									
CACNA2D4	93589	broad.mit.edu	37	12	2017150	2017150	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:2017150G>A	uc001qjp.2	-	5	771	c.540C>T	c.(538-540)TTC>TTT	p.F180F	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.F180F	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	180	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CCAGCTCCACGAAGTTGCCCT	0.627		NaN											0	0	0	0.008871	0	18	100									
TEAD4	7004	broad.mit.edu	37	12	3104006	3104006	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:3104006C>T	uc010sej.1	+	3	348	c.71C>T	c.(70-72)TCT>TTT	p.S24F	TEAD4_uc010sek.1_Missense_Mutation_p.S24F|TEAD4_uc001qln.2_Intron	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	25					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			AGCACCGCCTCTGGGGGCAGT	0.647		NaN											0	0	0	0.004289	0	27	202									
EFCAB4B	84766	broad.mit.edu	37	12	3789434	3789434	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:3789434G>C	uc001qmj.2	-	5	882	c.310C>G	c.(310-312)CTG>GTG	p.L104V	EFCAB4B_uc010sen.1_Missense_Mutation_p.L104V|EFCAB4B_uc010seo.1_Missense_Mutation_p.L104V	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	104	EF-hand 2.|				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			TGTGGGGTCAGATAGCCATTG	0.512		NaN											0	0	0	0.010504	0	15	97									
CHD4	1108	broad.mit.edu	37	12	6692090	6692090	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:6692090G>A	uc001qpo.2	-	28	4324	c.4160C>T	c.(4159-4161)CCC>CTC	p.P1387L	CHD4_uc001qpn.2_Missense_Mutation_p.P1380L|CHD4_uc001qpp.2_Missense_Mutation_p.P1412L|uc001qpq.1_Missense_Mutation_p.G98E|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1387					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CTTACGACTGGGCCTACGGGG	0.448		NaN											0	0	0	0.006122	0	18	89									
CD163L1	283316	broad.mit.edu	37	12	7527246	7527246	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:7527246C>G	uc001qsy.2	-	13	3227	c.3201G>C	c.(3199-3201)CTG>CTC	p.L1067L	CD163L1_uc010sge.1_Silent_p.L1077L	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1067	SRCR 10.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						GGGCATCGCTCAGGTCCCAGC	0.622		NaN									OREG0021653	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00245	0	13	81									
RIMKLB	57494	broad.mit.edu	37	12	8866535	8866535	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:8866535G>A	uc001quu.2	+	2	324	c.73G>A	c.(73-75)GAG>AAG	p.E25K	RIMKLB_uc009zgf.1_RNA|RIMKLB_uc001qux.2_Missense_Mutation_p.E25K|RIMKLB_uc010sgl.1_Missense_Mutation_p.E25K|RIMKLB_uc001quw.2_Missense_Mutation_p.E25K	NM_020734	NP_065785	Q9ULI2	RIMKB_HUMAN	ribosomal modification protein rimK-like family	25					protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						TCCTCAAAAAGAGATTTTACG	0.478		NaN											0	0	0	0.006214	0	7	39									
CLEC1B	51266	broad.mit.edu	37	12	10149469	10149469	+	Silent	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:10149469C>A	uc001qwu.2	-	4	614	c.414G>T	c.(412-414)CTG>CTT	p.L138L	CLEC1B_uc009zhd.2_Silent_p.L105L	NM_016509	NP_057593	Q9P126	CLC1B_HUMAN	C-type lectin domain family 1, member B isoform	138	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	protein binding|sugar binding|transmembrane receptor activity				0						TGTCAATCTTCAGGAGAGTAG	0.398		NaN											1	0	3.86212e-05	0.008291	3.98512e-05	9	74									
WBP11	51729	broad.mit.edu	37	12	14946788	14946788	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:14946788G>C	uc001rci.2	-	8	951	c.790C>G	c.(790-792)CAA>GAA	p.Q264E		NM_016312	NP_057396	Q9Y2W2	WBP11_HUMAN	WW domain binding protein 11	264	Asp-rich.				mRNA processing|RNA splicing|rRNA processing	cytoplasm	single-stranded DNA binding|WW domain binding			ovary(1)|lung(1)	2						TGCTTATCTTGATCCATGTCC	0.463		NaN											0	0	0	0.00499	0	15	136									
AEBP2	121536	broad.mit.edu	37	12	19593295	19593295	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:19593295C>A	uc001ref.2	+	1	688	c.662C>A	c.(661-663)TCG>TAG	p.S221*	AEBP2_uc001ree.2_Nonsense_Mutation_p.S221*|AEBP2_uc001reg.1_5'Flank	NM_001114176	NP_001107648	Q6ZN18	AEBP2_HUMAN	AE binding protein 2 isoform b	221	Ser-rich.|Interaction with RBBP4.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)|Esophageal squamous(101;0.143)					CGCATGGACTCGGAGGACAGG	0.562		NaN											1	0	8.12818e-05	0.001984	8.37371e-05	5	68									
SLCO1B1	10599	broad.mit.edu	37	12	21392055	21392055	+	Missense_Mutation	SNP	T	T	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:21392055T>A	uc001req.3	+	15	2112	c.2008T>A	c.(2008-2010)TTA>ATA	p.L670I		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	670	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TGAAGCAAACTTAGAATCCTT	0.318		NaN											0	0	0	0.009096	0	3	13									
ITPR2	3709	broad.mit.edu	37	12	26589263	26589263	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:26589263G>A	uc001rhg.2	-	48	7077	c.6660C>T	c.(6658-6660)TTC>TTT	p.F2220F	ITPR2_uc009zjg.1_Silent_p.F371F	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	2220	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TCGAGAACCAGAACAGTGCAG	0.418		NaN											0	0	0	0.000602	0	4	45									
ARNTL2	56938	broad.mit.edu	37	12	27523108	27523108	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:27523108C>T	uc001rht.1	+	3	247	c.229C>T	c.(229-231)CCC>TCC	p.P77S	ARNTL2_uc001rhw.2_Intron|ARNTL2_uc010sjp.1_Intron|ARNTL2_uc001rhu.1_Missense_Mutation_p.P77S|ARNTL2_uc009zji.1_Intron|ARNTL2_uc001rhv.1_Intron	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	77					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					TTCTCAGAATCCCCTTACCTA	0.483		NaN											0	0	0	0.007413	0	14	91									
BICD1	636	broad.mit.edu	37	12	32480797	32480797	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:32480797G>C	uc001rku.2	+	5	1489	c.1408G>C	c.(1408-1410)GAG>CAG	p.E470Q	BICD1_uc001rkv.2_Missense_Mutation_p.E470Q|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	470	Potential.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			GACAAGCCTTGAGAAGACCAC	0.418		NaN											0	0	0	0.004672	0	3	40									
ARID2	196528	broad.mit.edu	37	12	46245498	46245498	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			C	G	C	C		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:46245498C>G	uc001ros.1	+	15	3592	c.3592C>G	c.(3592-3594)CCA>GCA	p.P1198A	ARID2_uc001ror.2_Missense_Mutation_p.P1198A|ARID2_uc009zkg.1_Missense_Mutation_p.P654A|ARID2_uc009zkh.1_Missense_Mutation_p.P825A|ARID2_uc001rou.1_Missense_Mutation_p.P532A	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1198					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GCTCATTGCTCCAGCAGGAAT	0.498		NaN											0	0	0	0.000602	0	5	51									
H1FNT	341567	broad.mit.edu	37	12	48723735	48723735	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:48723735G>A	uc001rrm.2	+	1	973	c.661G>A	c.(661-663)GTG>ATG	p.V221M		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	221					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						AGGACAGGCCGTGAAGGAAGA	0.662		NaN											0	0	0	0.009096	0	4	16									
TUBA1A	7846	broad.mit.edu	37	12	49579554	49579554	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:49579554C>T	uc009zlf.2	-	4	867	c.595G>A	c.(595-597)GAT>AAT	p.D199N	TUBA1B_uc001rto.2_Intron|TUBA1A_uc001rtp.2_Missense_Mutation_p.D199N|TUBA1A_uc001rtq.2_Missense_Mutation_p.D46N|TUBA1A_uc001rtr.2_Missense_Mutation_p.D46N|TUBA1A_uc009zlg.2_Missense_Mutation_p.D46N	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	199					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						AAGGCACAATCAGAGTGCTCC	0.498		NaN											0	0	0	0.001855	0	12	103									
KCNH3	23416	broad.mit.edu	37	12	49934725	49934725	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:49934725C>T	uc001ruh.1	+	2	380	c.120C>T	c.(118-120)TTC>TTT	p.F40F	KCNH3_uc010smj.1_5'UTR	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	40	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						CGGGGCTCTTCCCCGTGGTCT	0.632		NaN											0	0	0	0.001368	0	9	72									
KCNH3	23416	broad.mit.edu	37	12	49935417	49935417	+	Silent	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:49935417C>A	uc001ruh.1	+	3	575	c.315C>A	c.(313-315)CTC>CTA	p.L105L	KCNH3_uc010smj.1_Silent_p.L45L	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	105	PAC.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						GCCCAGGGCTCCCGTTCTGGT	0.547		NaN											1	0	2.35188e-11	0.006122	2.50044e-11	16	151									
LIMA1	51474	broad.mit.edu	37	12	50616148	50616148	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:50616148C>A	uc001rwj.3	-	4	460	c.286G>T	c.(286-288)GAG>TAG	p.E96*	LIMA1_uc001rwh.3_5'UTR|LIMA1_uc001rwi.3_5'UTR|LIMA1_uc001rwk.3_Nonsense_Mutation_p.E96*|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	96					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TGCCTAATCTCAGTGCTGCTG	0.527		NaN											1	0	4.96729e-08	0.008871	5.21686e-08	16	173									
KRT6B	3854	broad.mit.edu	37	12	52845454	52845454	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:52845454C>G	uc001sak.2	-	1	457	c.409G>C	c.(409-411)GAG>CAG	p.E137Q		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	137	Head.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		ACAGTGACCTCTTGGATGCCT	0.642		NaN											0	0	0	0.003163	0	12	176									
KRT6A	3853	broad.mit.edu	37	12	52886480	52886480	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:52886480C>T	uc001sam.2	-	1	702	c.493G>A	c.(493-495)GAA>AAA	p.E165K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	165	Coil 1A.|Rod.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		TTGATCTGTTCACGCTCCTCA	0.592		NaN											0	0	0	0.00361	0	41	290									
RARG	5916	broad.mit.edu	37	12	53607028	53607028	+	Splice_Site	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:53607028C>T	uc001sce.2	-	9	1504	c.1019_splice	c.e9-1	p.D340_splice	RARG_uc001scd.2_Splice_Site_p.D329_splice|RARG_uc010sob.1_Splice_Site_p.D318_splice|RARG_uc001scf.2_Splice_Site_p.D340_splice|RARG_uc001scg.2_Splice_Site_p.D268_splice|RARG_uc010soc.1_Splice_Site_p.D219_splice|RARG_uc010sod.1_3'UTR	NM_000966	NP_000957	P13631	RARG_HUMAN	retinoic acid receptor, gamma isoform 1						canonical Wnt receptor signaling pathway|embryonic eye morphogenesis|embryonic hindlimb morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|regulation of cell size|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid	integral to membrane|transcription factor complex	retinoic acid receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			breast(2)|ovary(1)|lung(1)	4					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	TCCATGCGGTCTATGGGGACA	0.607		NaN									OREG0021862	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.008291	0	7	64									
TARBP2	6895	broad.mit.edu	37	12	53897505	53897505	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:53897505C>T	uc001sdo.2	+	4	823	c.335C>T	c.(334-336)TCT>TTT	p.S112F	TARBP2_uc009znb.2_Missense_Mutation_p.S112F|TARBP2_uc001sdp.2_Missense_Mutation_p.S91F|TARBP2_uc001sdq.2_5'UTR|TARBP2_uc001sdr.2_Intron|TARBP2_uc001sds.2_Missense_Mutation_p.S112F|TARBP2_uc001sdt.2_Missense_Mutation_p.S91F|TARBP2_uc001sdu.2_Intron|TARBP2_uc001sdv.2_RNA	NM_134323	NP_599150	Q15633	TRBP2_HUMAN	TAR RNA binding protein 2 isoform a	112					miRNA loading onto RISC involved in gene silencing by miRNA|negative regulation of defense response to virus by host|negative regulation of protein kinase activity|positive regulation of viral genome replication|pre-miRNA processing|production of siRNA involved in RNA interference|regulation of transcription from RNA polymerase II promoter|regulation of translation|regulation of viral transcription|targeting of mRNA for destruction involved in RNA interference	cytosol|nucleus|perinuclear region of cytoplasm|RNA-induced silencing complex	double-stranded RNA binding|protein homodimerization activity|siRNA binding			central_nervous_system(1)	1						AGTTCTTTTTCTCCCCTAGAC	0.562		NaN											0	0	0	0.001368	0	10	106									
NPFF	8620	broad.mit.edu	37	12	53900643	53900643	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:53900643C>T	uc001sdw.1	-	3	423	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_003717	NP_003708	O15130	NPFF_HUMAN	neuropeptide FF-amide peptide preproprotein	87					neuropeptide signaling pathway|synaptic transmission	extracellular region|soluble fraction	neuropeptide hormone activity				0						CTCAGCCATTCATTCCTCCAG	0.552		NaN											0	0	0	0.005524	0	31	195									
ITGA5	3678	broad.mit.edu	37	12	54795249	54795249	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:54795249C>T	uc001sga.2	-	24	2469	c.2401G>A	c.(2401-2403)GAG>AAG	p.E801K		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	801	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						AGCACTGCCTCAGGCTTGGAG	0.567		NaN											0	0	0	0.00632	0	27	183									
OR6C3	254786	broad.mit.edu	37	12	55726281	55726281	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:55726281C>T	uc010spj.1	+	1	797	c.797C>T	c.(796-798)TCA>TTA	p.S266L		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAAAAGGCATCATTGACAAAA	0.383		NaN											0	0	0	0.009096	0	4	34									
COQ10A	93058	broad.mit.edu	37	12	56663988	56663988	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:56663988G>C	uc001sko.3	+	5	892	c.631G>C	c.(631-633)GAT>CAT	p.D211H	COQ10A_uc001skp.3_Missense_Mutation_p.D179H|COQ10A_uc001skq.3_Missense_Mutation_p.D194H	NM_144576	NP_653177	Q96MF6	CQ10A_HUMAN	coenzyme Q10 homolog A isoform a	211						mitochondrial inner membrane				ovary(1)	1						CATGTTTTTTGATGAGGTTGT	0.493		NaN											0	0	0	0.003271	0	27	204									
TIMELESS	8914	broad.mit.edu	37	12	56816720	56816720	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:56816720G>C	uc001slf.2	-	19	2517	c.2349C>G	c.(2347-2349)GTC>GTG	p.V783V		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	783					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CTTTTTGGTTGACTGCAGCCA	0.493		NaN											0	0	0	0.00308	0	6	85									
TIMELESS	8914	broad.mit.edu	37	12	56817142	56817142	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:56817142G>C	uc001slf.2	-	18	2376	c.2208C>G	c.(2206-2208)CTC>CTG	p.L736L		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	736					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CTTCCATTTTGAGGTCATGGG	0.507		NaN											0	0	0	0.001984	0	6	109									
TIMELESS	8914	broad.mit.edu	37	12	56817207	56817207	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:56817207G>C	uc001slf.2	-	18	2311	c.2143C>G	c.(2143-2145)CAG>GAG	p.Q715E		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	715					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CTATTCTGCTGGTAGCTCCTT	0.488		NaN											0	0	0	0.000602	0	5	103									
TIMELESS	8914	broad.mit.edu	37	12	56827390	56827390	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:56827390G>A	uc001slf.2	-	4	466	c.298C>T	c.(298-300)CTG>TTG	p.L100L	TIMELESS_uc001slg.2_Silent_p.L100L	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	100					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TCCTTAGGCAGATTGCCAAAA	0.483		NaN											0	0	0	0.00245	0	14	80									
STAT6	6778	broad.mit.edu	37	12	57501056	57501056	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:57501056G>C	uc009zpe.2	-	4	548	c.297C>G	c.(295-297)TTC>TTG	p.F99L	STAT6_uc009zpf.2_Missense_Mutation_p.F99L|STAT6_uc001sna.2_Missense_Mutation_p.F99L|STAT6_uc010srb.1_5'UTR|STAT6_uc010src.1_5'UTR|STAT6_uc010srd.1_5'UTR|STAT6_uc009zpg.2_Missense_Mutation_p.F148L	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	99					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						GTATTTGTCTGAAAGTGGCCA	0.478		NaN											0	0	0	0.00499	0	14	107									
LRP1	4035	broad.mit.edu	37	12	57586683	57586683	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:57586683C>T	uc001snd.2	+	45	7951	c.7485C>T	c.(7483-7485)CTC>CTT	p.L2495L	MIR1228_hsa-mir-1228|MI0006318_5'Flank	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2495	EGF-like 10.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGTGTCTGCTCACTCACCAGG	0.647		NaN											0	0	0	0.00874	0	40	323									
R3HDM2	22864	broad.mit.edu	37	12	57677750	57677750	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:57677750C>T	uc009zpm.1	-	11	1021	c.986G>A	c.(985-987)AGC>AAC	p.S329N	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_5'UTR|R3HDM2_uc001snr.2_Missense_Mutation_p.S56N|R3HDM2_uc001sns.2_Missense_Mutation_p.S329N|R3HDM2_uc001snt.2_Missense_Mutation_p.S343N	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	329	Ser-rich.					nucleus	nucleic acid binding			ovary(2)	2						GTCTGTGCTGCTCCAAGGGCG	0.597		NaN											0	0	0	0.004482	0	9	47									
GLI1	2735	broad.mit.edu	37	12	57865639	57865639	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:57865639C>T	uc001snx.2	+	12	3194	c.3116C>T	c.(3115-3117)TCT>TTT	p.S1039F	GLI1_uc009zpq.2_Missense_Mutation_p.S911F	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	1039	Asp/Glu-rich (acidic).				epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CCCCTGGACTCTCTTGATCTT	0.592		NaN											0	0	0	0.00361	0	42	251									
GEFT	115557	broad.mit.edu	37	12	58010154	58010154	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:58010154G>T	uc001spb.2	+	14	1968	c.1508G>T	c.(1507-1509)GGA>GTA	p.G503V	GEFT_uc009zpy.2_Missense_Mutation_p.G542V|GEFT_uc001spa.2_Missense_Mutation_p.G397V|uc001spc.2_Intron|GEFT_uc001spd.2_Missense_Mutation_p.G208V	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	503					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					GGGAGCCCTGGAAGAATTCAG	0.607		NaN											1	0	4.75885e-15	0.00499	5.1013e-15	17	77									
XPOT	11260	broad.mit.edu	37	12	64812872	64812872	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:64812872G>C	uc001ssb.2	+	6	913	c.487G>C	c.(487-489)GAG>CAG	p.E163Q	XPOT_uc009zqm.1_Missense_Mutation_p.E73Q	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	163	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		GCATACATCAGAGGCAAGTAA	0.393		NaN											0	0	0	0.001368	0	11	91									
XPOT	11260	broad.mit.edu	37	12	64833030	64833030	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:64833030G>A	uc001ssb.2	+	23	3166	c.2740G>A	c.(2740-2742)GAA>AAA	p.E914K		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	914	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		TCAGGGCCCAGAATGTGTTCA	0.323		NaN											0	0	0	0.008291	0	7	59									
HELB	92797	broad.mit.edu	37	12	66703693	66703693	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:66703693C>T	uc001sti.2	+	4	1013	c.985C>T	c.(985-987)CAT>TAT	p.H329Y	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	329					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		TATGTCATTTCATGCTGCTTC	0.383		NaN											0	0	0	0.008291	0	10	69									
NAV3	89795	broad.mit.edu	37	12	78513293	78513293	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:78513293C>T	uc001syp.2	+	15	3490	c.3317C>T	c.(3316-3318)TCA>TTA	p.S1106L	NAV3_uc001syo.2_Missense_Mutation_p.S1106L|NAV3_uc010sub.1_Missense_Mutation_p.S606L|NAV3_uc009zsf.2_Missense_Mutation_p.S114L	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1106	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GGCGGGAAGTCAAATGCAGGG	0.483		NaN								HNSCC(70;0.22)			0	0	0	0.003163	0	13	67									
ACSS3	79611	broad.mit.edu	37	12	81472105	81472105	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:81472105C>A	uc001szl.1	+	1	297	c.206C>A	c.(205-207)TCG>TAG	p.S69*	ACSS3_uc001szm.1_Nonsense_Mutation_p.S69*	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	69						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TTCGCAGCCTCGGTGACCGAC	0.657		NaN											1	0	0.000442599	0.006214	0.000454164	9	90									
MYBPC1	4604	broad.mit.edu	37	12	102057224	102057224	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:102057224C>T	uc001tii.2	+	20	2269	c.2167C>T	c.(2167-2169)CTT>TTT	p.L723F	MYBPC1_uc001tig.2_Missense_Mutation_p.L748F|MYBPC1_uc010svq.1_Missense_Mutation_p.L710F|MYBPC1_uc001tih.2_Missense_Mutation_p.L748F|MYBPC1_uc001tij.2_Missense_Mutation_p.L723F|MYBPC1_uc010svr.1_Missense_Mutation_p.L723F|MYBPC1_uc010svs.1_Missense_Mutation_p.L723F|MYBPC1_uc010svt.1_Missense_Mutation_p.L711F|MYBPC1_uc010svu.1_Missense_Mutation_p.L704F|MYBPC1_uc001tik.2_Missense_Mutation_p.L697F|MYBPC1_uc001til.2_5'Flank|MYBPC1_uc001tim.2_5'Flank	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	723	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						CCCTCCTACTCTTCTGACTGT	0.458		NaN											0	0	0	0.004007	0	14	96									
SART3	9733	broad.mit.edu	37	12	108954849	108954849	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:108954849C>T	uc001tmz.1	-	1	317	c.82G>A	c.(82-84)GAG>AAG	p.E28K	SART3_uc009zux.1_5'UTR|SART3_uc010swx.1_Missense_Mutation_p.E28K|SART3_uc010swz.1_Missense_Mutation_p.E28K|SART3_uc001tna.1_RNA|SART3_uc001tnb.2_Missense_Mutation_p.E28K|ISCU_uc010sxa.1_5'Flank|ISCU_uc010sxb.1_5'Flank|ISCU_uc001tnc.3_5'Flank|ISCU_uc010sxc.1_5'Flank|ISCU_uc009zuy.2_5'Flank|ISCU_uc010sxd.1_5'Flank	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	28	Potential.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						GCCTTAACCTCATCCTCCTCT	0.612		NaN							Porokeratosis				0	0	0	0.00499	0	13	103									
CUX2	23316	broad.mit.edu	37	12	111758298	111758298	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:111758298G>A	uc001tsa.1	+	17	2638	c.2485G>A	c.(2485-2487)GAG>AAG	p.E829K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	829						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CCGCGGGGACGAGGCCCCTGT	0.771		NaN											0	0	0	0.000602	0	4	19									
ATXN2	6311	broad.mit.edu	37	12	111957800	111957800	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:111957800G>C	uc001tsj.2	-	8	1511	c.1349C>G	c.(1348-1350)TCA>TGA	p.S450*	ATXN2_uc001tsh.2_Nonsense_Mutation_p.S185*|ATXN2_uc001tsi.2_Nonsense_Mutation_p.S161*|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Nonsense_Mutation_p.S185*	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	450					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						CTGGGCACTTGACTCAATTTC	0.428		NaN											0	0	0	0.009096	0	4	45									
C12orf51	283450	broad.mit.edu	37	12	112707527	112707527	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:112707527C>T	uc009zwc.2	-	6	1024	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	C12orf51_uc010syk.1_Missense_Mutation_p.E159K|C12orf51_uc001tts.2_Missense_Mutation_p.E159K|C12orf51_uc001ttt.3_Missense_Mutation_p.E159K	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AGGCAGACTTCCTTCTGAATT	0.423		NaN											0	0	0	0.009096	0	3	19									
TBX3	6926	broad.mit.edu	37	12	115112445	115112445	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:115112445G>A	uc001tvt.1	-	7	2259	c.1295C>T	c.(1294-1296)TCG>TTG	p.S432L	TBX3_uc001tvu.1_Missense_Mutation_p.S412L	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	432					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		TGAGTCGGGCGACGCTTTGTC	0.731		NaN											0	0	0	0.006214	0	8	28									
PRKAB1	5564	broad.mit.edu	37	12	120118103	120118103	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:120118103C>T	uc009zwu.2	+	8	889	c.786C>T	c.(784-786)GTC>GTT	p.V262V	PRKAB1_uc001txg.2_Silent_p.V262V	NM_006253	NP_006244	Q9Y478	AAKB1_HUMAN	AMP-activated protein kinase beta 1	262					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol					0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.166)	Adenosine monophosphate(DB00131)|Metformin(DB00331)	AGAAGTACGTCACCACCTTGT	0.527		NaN											0	0	0	0.00308	0	6	45									
CIT	11113	broad.mit.edu	37	12	120220372	120220372	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:120220372G>A	uc001txi.1	-	13	1668	c.1615C>T	c.(1615-1617)CTC>TTC	p.L539F	CIT_uc001txh.1_Missense_Mutation_p.L73F|CIT_uc001txj.1_Missense_Mutation_p.L539F	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	539	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		ATATCATGGAGAAGCTGCAGT	0.512		NaN											0	0	0	0.004482	0	7	64									
GCN1L1	10985	broad.mit.edu	37	12	120592798	120592798	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:120592798G>C	uc001txo.2	-	31	3690	c.3677C>G	c.(3676-3678)TCT>TGT	p.S1226C		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1226					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATCTGGAGGAGATTCTGAAAT	0.532		NaN											0	0	0	0.001855	0	13	103									
DENR	8562	broad.mit.edu	37	12	123253411	123253411	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:123253411C>T	uc001uda.2	+	7	631	c.495C>T	c.(493-495)ATC>ATT	p.I165I	DENR_uc010tag.1_Intron|DENR_uc001udb.2_Silent_p.I119I	NM_003677	NP_003668	O43583	DENR_HUMAN	density-regulated protein	165	SUI1.						protein binding|translation initiation factor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.28e-05)|Epithelial(86;6.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.199)		ATGAAATTATCATTCAGGGAG	0.343		NaN											0	0	0	0.009096	0	3	15									
MPHOSPH9	10198	broad.mit.edu	37	12	123665727	123665727	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:123665727C>G	uc001uel.2	-	10	1923	c.1816G>C	c.(1816-1818)GAA>CAA	p.E606Q	MPHOSPH9_uc010tal.1_Missense_Mutation_p.E60Q|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Missense_Mutation_p.E60Q	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	606	Potential.				M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		CTCCTGTGTTCTTTTCCAAGG	0.219		NaN											0	0	0	0.001984	0	5	54									
TCTN2	79867	broad.mit.edu	37	12	124158295	124158295	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:124158295C>T	uc001ufp.2	+	4	529	c.401C>T	c.(400-402)TCA>TTA	p.S134L	TCTN2_uc009zya.2_Missense_Mutation_p.S133L	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	134	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TCATCCTGTTCAGCACATCTA	0.448		NaN											0	0	0	0.009718	0	34	159									
DNAH10	196385	broad.mit.edu	37	12	124409711	124409711	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:124409711C>T	uc001uft.3	+	67	11552	c.11527C>T	c.(11527-11529)CGG>TGG	p.R3843W	DNAH10_uc001ufu.3_5'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3843					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCGGGTCTATCGGGCCGTGAC	0.498		NaN											0	0	0	0.00499	0	14	102									
GPR133	283383	broad.mit.edu	37	12	131471689	131471689	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:131471689G>A	uc001uit.3	+	6	1099	c.540G>A	c.(538-540)CTG>CTA	p.L180L	GPR133_uc010tbm.1_Silent_p.L212L	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	180	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		AGGAGGGCCTGAAAGTCTACG	0.517		NaN											0	0	0	0.008291	0	9	63									
ANKLE2	23141	broad.mit.edu	37	12	133327436	133327436	+	Splice_Site	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr12:133327436C>G	uc001ukx.2	-	3	708	c.641_splice	c.e3-1	p.E214_splice	ANKLE2_uc001uky.3_Splice_Site_p.E152_splice	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2							cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		TAGATCCTTTCTGGGTAAGAA	0.433		NaN											0	0	0	0.000602	0	4	28									
SAP18	10284	broad.mit.edu	37	13	21721357	21721357	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:21721357G>C	uc001uns.2	+	4	434	c.395G>C	c.(394-396)AGA>ACA	p.R132T		NM_005870	NP_005861	O00422	SAP18_HUMAN	Sin3A-associated protein, 18kDa	113					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|plasma membrane	protein binding|transcription corepressor activity				0		all_cancers(29;2.16e-20)|all_epithelial(30;2.97e-18)|all_lung(29;4.58e-16)|Lung SC(185;0.0262)|Breast(139;0.147)		all cancers(112;9.79e-05)|Epithelial(112;0.000292)|OV - Ovarian serous cystadenocarcinoma(117;0.00276)|Lung(94;0.0941)		ATGTCTGGCAGAAAGGGGACT	0.443		NaN											0	0	0	0.007413	0	15	101									
PARP4	143	broad.mit.edu	37	13	25067846	25067846	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:25067846G>C	uc001upl.2	-	8	873	c.767C>G	c.(766-768)TCA>TGA	p.S256*	PARP4_uc010tdc.1_Nonsense_Mutation_p.S256*	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	256	PARP alpha-helical.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CAGAGTGCTTGAATTCATGAC	0.438		NaN											0	0	0	0.004007	0	13	37									
PARP4	143	broad.mit.edu	37	13	25077788	25077788	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:25077788G>C	uc001upl.2	-	2	233	c.127C>G	c.(127-129)CCT>GCT	p.P43A	PARP4_uc010tdc.1_Missense_Mutation_p.P43A	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	43	BRCT.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		AATACCTGAGGATTTAACGAA	0.398		NaN											0	0	0	0.008291	0	7	65									
WASF3	10810	broad.mit.edu	37	13	27239225	27239225	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:27239225G>A	uc001uqv.2	+	4	419	c.194G>A	c.(193-195)AGA>AAA	p.R65K	WASF3_uc001uqw.2_Missense_Mutation_p.R65K	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	65	Potential.				actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		TTCTACATCAGAGCAAATTCT	0.423		NaN											0	0	0	0.008291	0	10	65									
LNX2	222484	broad.mit.edu	37	13	28141891	28141891	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:28141891G>A	uc001url.3	-	4	1050	c.741C>T	c.(739-741)ATC>ATT	p.I247I	LNX2_uc001urm.1_Silent_p.I247I	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	247	PDZ 1.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		CCACAATGCTGATTCCTAACT	0.458		NaN											0	0	0	0.001168	0	6	53									
USPL1	10208	broad.mit.edu	37	13	31233420	31233420	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:31233420C>T	uc001utc.2	+	9	3638	c.3206C>T	c.(3205-3207)TCA>TTA	p.S1069L	USPL1_uc001utd.2_Missense_Mutation_p.S740L|USPL1_uc001ute.1_Missense_Mutation_p.S740L	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	1069					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		TTTTCCTCCTCAGCATTAAAT	0.343		NaN											0	0	0	0.000602	0	5	39									
FRY	10129	broad.mit.edu	37	13	32709061	32709061	+	Silent	SNP	C	C	T	rs34037604		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:32709061C>T	uc001utx.2	+	9	1402	c.906C>T	c.(904-906)CTC>CTT	p.L302L	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	302					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ATTACTTCCTCGAGGTCAAAG	0.388		NaN											0	0	0	0.003271	0	22	126									
FRY	10129	broad.mit.edu	37	13	32721489	32721489	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:32721489G>A	uc001utx.2	+	12	1746	c.1250G>A	c.(1249-1251)CGA>CAA	p.R417Q	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	417					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TACATGATTCGAATTAAATGT	0.398		NaN											0	0	0	0.004672	0	3	27									
N4BP2L2	10443	broad.mit.edu	37	13	33017213	33017213	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:33017213C>T	uc010abe.1	-	7	1483	c.1461G>A	c.(1459-1461)AGG>AGA	p.R487R	N4BP2L2_uc001uug.2_Silent_p.R370R|N4BP2L2_uc010abd.1_Silent_p.R400R|N4BP2L2_uc001uuh.2_Silent_p.R318R|N4BP2L2_uc001uuj.2_Intron|N4BP2L2_uc010tdz.1_Silent_p.R472R	NM_033111	NP_149102	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	140											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		TTTTCTTCCTCCTTTTCTTAT	0.343		NaN											0	0	0	0.001168	0	4	15									
STARD13	90627	broad.mit.edu	37	13	33700224	33700224	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:33700224G>C	uc001uuw.2	-	7	2202	c.2076C>G	c.(2074-2076)CTC>CTG	p.L692L	STARD13_uc001uuu.2_Silent_p.L684L|STARD13_uc001uuv.2_Silent_p.L574L|STARD13_uc001uux.2_Silent_p.L657L|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	692	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CTACCTGATCGAGGCAGTTGC	0.552		NaN											0	0	0	0.006122	0	15	107									
FREM2	341640	broad.mit.edu	37	13	39433625	39433625	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:39433625C>T	uc001uwv.2	+	14	7726	c.7417C>T	c.(7417-7419)CAG>TAG	p.Q2473*	FREM2_uc001uww.2_Nonsense_Mutation_p.Q559*	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2473	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CATATACTTTCAGCCTGGCTC	0.542		NaN											0	0	0	0.003163	0	13	80									
KBTBD7	84078	broad.mit.edu	37	13	41767323	41767323	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:41767323G>C	uc001uxw.1	-	1	1380	c.1071C>G	c.(1069-1071)CTC>CTG	p.L357L	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	357							protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		GGTCATAGCAGAGAAAGGGAT	0.493		NaN											0	0	0	0.004482	0	3	38									
TSC22D1	8848	broad.mit.edu	37	13	45148962	45148962	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:45148962C>G	uc001uzn.3	-	1	1740	c.1249G>C	c.(1249-1251)GAG>CAG	p.E417Q	TSC22D1_uc001uzo.1_Missense_Mutation_p.E417Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	417					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TTAAAGGGCTCAGAACTAGAA	0.438		NaN											0	0	0	0.00245	0	13	67									
KIAA1704	55425	broad.mit.edu	37	13	45589108	45589108	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:45589108G>C	uc001uzq.2	+	5	533	c.430G>C	c.(430-432)GAG>CAG	p.E144Q	KIAA1704_uc010tfo.1_RNA|KIAA1704_uc001uzr.1_Missense_Mutation_p.E144Q|KIAA1704_uc001uzs.2_Missense_Mutation_p.E21Q|KIAA1704_uc001uzt.2_5'UTR	NM_018559	NP_061029	Q8IXQ4	K1704_HUMAN	hypothetical protein LOC55425	144										pancreas(1)|skin(1)	2		Lung NSC(96;0.00143)|Prostate(109;0.0137)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000313)|BRCA - Breast invasive adenocarcinoma(63;0.126)		CAGTGAAGATGAGGATATTAT	0.348		NaN											0	0	0	0.001855	0	10	48									
C13orf18	80183	broad.mit.edu	37	13	46942258	46942258	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:46942258G>A	uc010acl.2	-	5	1350	c.745C>T	c.(745-747)CAG>TAG	p.Q249*	C13orf18_uc001vbf.3_Nonsense_Mutation_p.Q182*|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Nonsense_Mutation_p.Q92*|C13orf18_uc010acm.2_Nonsense_Mutation_p.Q114*|C13orf18_uc010acn.2_Nonsense_Mutation_p.Q34*|C13orf18_uc001vbe.3_Nonsense_Mutation_p.Q249*|C13orf18_uc001vbh.3_Nonsense_Mutation_p.Q249*|C13orf18_uc001vbi.3_Nonsense_Mutation_p.Q92*|C13orf18_uc010aco.1_Nonsense_Mutation_p.Q249*	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	249											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		GAGTCAGGCTGATCACTCCCA	0.408		NaN											0	0	0	0.010504	0	16	83									
LRCH1	23143	broad.mit.edu	37	13	47263286	47263286	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:47263286G>C	uc001vbj.2	+	7	1205	c.969G>C	c.(967-969)TCG>TCC	p.S323S	LRCH1_uc010acp.2_Silent_p.S323S|LRCH1_uc001vbk.2_Silent_p.S323S|LRCH1_uc001vbl.3_Silent_p.S323S	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	323										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		ATTCTGATTCGGGAGTTGGAA	0.343		NaN											0	0	0	0.013114	0	34	102									
LRCH1	23143	broad.mit.edu	37	13	47263293	47263293	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:47263293G>A	uc001vbj.2	+	7	1212	c.976G>A	c.(976-978)GGA>AGA	p.G326R	LRCH1_uc010acp.2_Missense_Mutation_p.G326R|LRCH1_uc001vbk.2_Missense_Mutation_p.G326R|LRCH1_uc001vbl.3_Missense_Mutation_p.G326R	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	326										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		TTCGGGAGTTGGAAGTGATAA	0.353		NaN											0	0	0	0.00361	0	32	109									
PHF11	51131	broad.mit.edu	37	13	50080827	50080827	+	Missense_Mutation	SNP	G	G	A	rs73188692	by1000genomes	TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:50080827G>A	uc001vdb.2	+	2	488	c.151G>A	c.(151-153)GAT>AAT	p.D51N	PHF11_uc010tgl.1_Missense_Mutation_p.D51N|PHF11_uc001vdc.2_Missense_Mutation_p.D12N|PHF11_uc001vdd.2_RNA	NM_001040443	NP_001035533	Q9UIL8	PHF11_HUMAN	PHD finger protein 11 isoform a	51					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.38e-09)		CTGCCCCAAAGATGTCGAATA	0.363		NaN											0	0	0	0.008291	0	8	48									
TBC1D4	9882	broad.mit.edu	37	13	75861065	75861065	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:75861065C>G	uc001vjl.1	-	21	4107	c.3760G>C	c.(3760-3762)GAA>CAA	p.E1254Q	TBC1D4_uc010tht.1_Missense_Mutation_p.E464Q|TBC1D4_uc010thu.1_Missense_Mutation_p.E411Q|TBC1D4_uc010aer.2_Missense_Mutation_p.E1246Q|TBC1D4_uc010aes.2_Missense_Mutation_p.E1191Q	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1254						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GCCATTTTTTCTTGTTCCAGG	0.453		NaN											0	0	0	0.001168	0	4	40									
RBM26	64062	broad.mit.edu	37	13	79942973	79942973	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:79942973G>T	uc001vkz.2	-	6	801	c.787C>A	c.(787-789)CAT>AAT	p.H263N	RBM26_uc001vky.2_Missense_Mutation_p.H263N|RBM26_uc001vla.2_Missense_Mutation_p.H263N|RBM26_uc001vkx.2_5'UTR|RBM26_uc001vlb.1_RNA	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	263					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		TTGTTTCCATGATGAGTAGGA	0.418		NaN											1	0	2.17888e-05	0.006214	2.25545e-05	7	74									
RBM26	64062	broad.mit.edu	37	13	79943032	79943032	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:79943032G>C	uc001vkz.2	-	6	742	c.728C>G	c.(727-729)TCT>TGT	p.S243C	RBM26_uc001vky.2_Missense_Mutation_p.S243C|RBM26_uc001vla.2_Missense_Mutation_p.S243C|RBM26_uc001vkx.2_Translation_Start_Site|RBM26_uc001vlb.1_RNA	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	243					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		GTAGTGGCCAGATGAAATACT	0.393		NaN											0	0	0	0.010729	0	8	80									
SLITRK5	26050	broad.mit.edu	37	13	88328435	88328435	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:88328435T>A	uc001vln.2	+	2	1011	c.792T>A	c.(790-792)TGT>TGA	p.C264*	SLITRK5_uc010tic.1_Intron	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	264	LRRCT 1.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					ATGTAGTTTGTGAGACCCCCT	0.507		NaN											0	0	0	0.006214	0	6	123									
C13orf39	196541	broad.mit.edu	37	13	103343304	103343304	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:103343304C>G	uc001vpj.2	-	2	147	c.141G>C	c.(139-141)AAG>AAC	p.K47N	C13orf39_uc001vpk.2_Missense_Mutation_p.K47N	NM_001010977	NP_001010977	Q5VZV1	MT21C_HUMAN	hypothetical protein LOC196541	47							methyltransferase activity				0						ATGGTTCTATCTTGTTGGATT	0.393		NaN											0	0	0	0.008291	0	9	68									
MYO16	23026	broad.mit.edu	37	13	109535458	109535458	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:109535458C>G	uc001vqt.1	+	13	1537	c.1411C>G	c.(1411-1413)CCT>GCT	p.P471A	MYO16_uc010agk.1_Missense_Mutation_p.P493A|MYO16_uc001vqu.1_Missense_Mutation_p.P271A	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	471	Myosin head-like 1.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTCGCTGCCTCCTCACCTCTT	0.562		NaN											0	0	0	0.002299	0	19	177									
COL4A2	1284	broad.mit.edu	37	13	110960258	110960258	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:110960258G>A	uc001vqx.2	+	2	297	c.8G>A	c.(7-9)AGA>AAA	p.R3K	COL4A1_uc001vqw.3_5'Flank|COL4A1_uc010agl.2_5'Flank	NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	3					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGCATGGGGAGAGACCAGCGC	0.662		NaN											0	0	0	0.00245	0	10	86									
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr13:115047559C>T	uc001vup.2	+	2	308	c.271C>T	c.(271-273)CTG>TTG	p.L91L	UPF3A_uc010tkn.1_Silent_p.L91L|UPF3A_uc001vuq.2_Silent_p.L91L|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	91	Required for interaction with UPF2.				mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GCTGCGCCCGCTGCCAGCACA	0.731		NaN											0	0	0	0.004672	0	3	20									
OR4K15	81127	broad.mit.edu	37	14	20444469	20444469	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:20444469G>A	uc010tkx.1	+	1	792	c.792G>A	c.(790-792)TTG>TTA	p.L264L		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	264	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTCCACATTGACTGCTCACA	0.463		NaN											0	0	0	0.000602	0	4	28									
FITM1	161247	broad.mit.edu	37	14	24601689	24601689	+	Missense_Mutation	SNP	G	G	A	rs147303563		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:24601689G>A	uc001wmf.2	+	2	634	c.536G>A	c.(535-537)CGA>CAA	p.R179Q		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	179	Extracellular (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						CACCAGTGGCGAGGCTACACC	0.652		NaN											0	0	0	0.00499	0	14	94									
DHRS1	115817	broad.mit.edu	37	14	24768168	24768168	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:24768168G>A	uc001woj.1	-	2	414	c.145C>T	c.(145-147)CAG>TAG	p.Q49*	C14orf21_uc001wol.1_5'Flank|DHRS1_uc001wok.2_Nonsense_Mutation_p.Q49*	NM_138452	NP_612461	Q96LJ7	DHRS1_HUMAN	dehydrogenase/reductase (SDR family) member 1	49						endoplasmic reticulum	binding|oxidoreductase activity				0				GBM - Glioblastoma multiforme(265;2.81e-08)|OV - Ovarian serous cystadenocarcinoma(311;0.0442)		CTCACCTCCTGAGCAACAACG	0.547		NaN											0	0	0	0.010504	0	19	94									
STXBP6	29091	broad.mit.edu	37	14	25288302	25288302	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:25288302C>G	uc001wpu.2	-	5	1265	c.550G>C	c.(550-552)GAG>CAG	p.E184Q	STXBP6_uc001wpv.2_Missense_Mutation_p.E184Q|STXBP6_uc001wpw.2_Missense_Mutation_p.E184Q|STXBP6_uc001wpx.1_RNA|STXBP6_uc001wpt.2_Missense_Mutation_p.E82Q	NM_014178	NP_054897	Q8NFX7	STXB6_HUMAN	amisyn	184	v-SNARE coiled-coil homology.				vesicle-mediated transport	cytoplasm|integral to membrane					0				GBM - Glioblastoma multiforme(265;0.0296)		GTCTTCTCCTCTGCTCGGCCT	0.572		NaN											0	0	0	0.012319	0	17	126									
SCFD1	23256	broad.mit.edu	37	14	31177222	31177222	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:31177222G>C	uc001wqm.1	+	19	1604	c.1580G>C	c.(1579-1581)GGA>GCA	p.G527A	SCFD1_uc001wqn.1_Missense_Mutation_p.G460A|SCFD1_uc010tpg.1_Missense_Mutation_p.G468A|SCFD1_uc010tph.1_Missense_Mutation_p.G342A|SCFD1_uc010amf.1_Missense_Mutation_p.G342A|SCFD1_uc010tpi.1_Missense_Mutation_p.G435A|SCFD1_uc010amd.1_Intron|SCFD1_uc010ame.1_Missense_Mutation_p.G460A	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a	527					post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		ATGAATACAGGATCACAGTTT	0.358		NaN											0	0	0	0.010729	0	9	57									
AKAP6	9472	broad.mit.edu	37	14	33292806	33292806	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:33292806G>C	uc001wrq.2	+	13	5957	c.5787G>C	c.(5785-5787)GAG>GAC	p.E1929D		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1929					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AGATTTCAGAGAGTGAGCATT	0.373		NaN											0	0	0	0.001168	0	6	28									
FAM179B	23116	broad.mit.edu	37	14	45433339	45433339	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:45433339G>A	uc001wvv.2	+	1	1924	c.1715G>A	c.(1714-1716)AGA>AAA	p.R572K	FAM179B_uc001wvw.2_Missense_Mutation_p.R572K|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Missense_Mutation_p.R572K|FAM179B_uc001wvu.2_Missense_Mutation_p.R572K	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	572							binding			skin(2)|upper_aerodigestive_tract(1)	3						GTGCAGGCCAGATTGGCTAGG	0.468		NaN											0	0	0	0.003163	0	14	118									
C14orf104	55172	broad.mit.edu	37	14	50100987	50100987	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:50100987G>A	uc001wws.3	-	1	962	c.881C>T	c.(880-882)TCG>TTG	p.S294L	SDCCAG1_uc010anj.1_Intron|C14orf104_uc001wwt.3_Missense_Mutation_p.S294L	NM_018139	NP_060609	Q9NVR5	KTU_HUMAN	kintoun isoform 1	294					axonemal dynein complex assembly|ciliary cell motility|flagellar cell motility	cytoplasm					0	all_epithelial(31;0.0021)|Breast(41;0.0124)					CTGCTCGGCCGAGCGCAACAG	0.657		NaN							Kartagener_syndrome				0	0	0	0.006122	0	12	64									
PYGL	5836	broad.mit.edu	37	14	51411041	51411041	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:51411041C>G	uc001wyu.2	-	1	208	c.81G>C	c.(79-81)GAG>GAC	p.E27D	PYGL_uc010tqq.1_Missense_Mutation_p.E27D|PYGL_uc001wyv.2_5'UTR|PYGL_uc001wyw.3_Missense_Mutation_p.E27D	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	27					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TCTTCTTCAGCTCTGCCACGT	0.607		NaN											0	0	0	0.001368	0	10	78									
GPR137C	283554	broad.mit.edu	37	14	53020091	53020091	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:53020091G>A	uc001wzu.3	+	1	226	c.226G>A	c.(226-228)GAG>AAG	p.E76K	TXNDC16_uc010tqu.1_5'Flank|TXNDC16_uc001wzs.2_5'Flank|TXNDC16_uc010aoe.2_5'Flank|GPR137C_uc001wzt.3_Missense_Mutation_p.E76K	NM_001099652	NP_001093122	Q8N3F9	G137C_HUMAN	G protein-coupled receptor 137C	76	Cytoplasmic (Potential).					integral to membrane					0	Breast(41;0.0716)					CCTGTACCGCGAGCGGCGGCT	0.677		NaN											0	0	0	0.001168	0	3	17									
DLGAP5	9787	broad.mit.edu	37	14	55618639	55618639	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:55618639C>G	uc001xbs.2	-	17	2359	c.2142G>C	c.(2140-2142)TTG>TTC	p.L714F	DLGAP5_uc001xbt.2_Missense_Mutation_p.L714F	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	714					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						AATCCACCTTCAAGTCTGTCT	0.303		NaN											0	0	0	0.00308	0	5	39									
JKAMP	51528	broad.mit.edu	37	14	59965517	59965517	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:59965517G>A	uc001xei.3	+	5	1075	c.573G>A	c.(571-573)AAG>AAA	p.K191K	JKAMP_uc001xef.3_Silent_p.K177K|JKAMP_uc001xeh.3_Silent_p.K171K|JKAMP_uc001xeg.3_Silent_p.K185K|JKAMP_uc010try.1_Silent_p.K114K|JKAMP_uc001xej.3_Silent_p.K114K	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	192	Cytoplasmic (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						TTCTGGTGAAGAAGATTGCAT	0.363		NaN											0	0	0	0.001168	0	4	22									
RDH11	51109	broad.mit.edu	37	14	68159246	68159246	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:68159246C>T	uc001xjv.3	-	3	348	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q	RDH11_uc001xjw.3_Silent_p.Q73Q|RDH11_uc001xjx.3_Silent_p.Q86Q	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	86	Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	CTGTCGTGGTCTGGATCTCTT	0.488		NaN											0	0	0	0.00361	0	36	214									
HEATR4	399671	broad.mit.edu	37	14	73959790	73959790	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:73959790C>T	uc010tua.1	-	17	3093	c.2683G>A	c.(2683-2685)GAC>AAC	p.D895N	C14orf169_uc001xok.1_3'UTR	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		GCTTCAGTGTCACAAACCTCG	0.398		NaN											0	0	0	0.008291	0	7	82									
HEATR4	399671	broad.mit.edu	37	14	73959826	73959826	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:73959826C>T	uc010tua.1	-	17	3057	c.2647G>A	c.(2647-2649)GAG>AAG	p.E883K	C14orf169_uc001xok.1_3'UTR	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		AGAACCATCTCATCTAGGTAC	0.433		NaN											0	0	0	0.000602	0	4	52									
LTBP2	4053	broad.mit.edu	37	14	75078187	75078187	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:75078187G>A	uc001xqa.2	-	1	848	c.461C>T	c.(460-462)GCG>GTG	p.A154V		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	154					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGTTGGGGGCGCAGCCCCAGA	0.726		NaN											0	0	0	0.001984	0	6	59									
TTLL5	23093	broad.mit.edu	37	14	76211452	76211452	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:76211452C>G	uc001xrx.2	+	16	1501	c.1296C>G	c.(1294-1296)CTC>CTG	p.L432L	TTLL5_uc010ask.1_Silent_p.L446L|TTLL5_uc001xrz.2_5'UTR|TTLL5_uc001xry.1_RNA	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	432					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		GCCGTCCACTCTCTGCCAGTG	0.458		NaN											0	0	0	0.00308	0	7	20									
C14orf148	122945	broad.mit.edu	37	14	77872309	77872309	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:77872309C>G	uc001xtr.2	-	5	999	c.852G>C	c.(850-852)TTG>TTC	p.L284F		NM_001113475	NP_001106946	Q6NXP6	CN148_HUMAN	hypothetical protein LOC122945 isoform 1	284					proline biosynthetic process		binding|pyrroline-5-carboxylate reductase activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		CTGTTAATTGCAACTTTGGGC	0.473		NaN											0	0	0	0.000602	0	3	27									
NDUFB1	4707	broad.mit.edu	37	14	92588065	92588065	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:92588065C>T	uc001yaf.2	-	1	89	c.57G>A	c.(55-57)CCG>CCA	p.P19P	NDUFB1_uc001yag.1_RNA|CPSF2_uc001yah.1_5'Flank	NM_004545	NP_004536	O75438	NDUB1_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	Error:Variant_position_missing_in_O75438_after_alignment					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0		all_cancers(154;0.0766)		COAD - Colon adenocarcinoma(157;0.205)	NADH(DB00157)	GCTGCGACCTCGGGACCTGCC	0.612		NaN											0	0	0	0.004007	0	13	94									
BTBD7	55727	broad.mit.edu	37	14	93730309	93730309	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:93730309G>A	uc001ybo.2	-	4	1519	c.1193C>T	c.(1192-1194)TCA>TTA	p.S398L	BTBD7_uc010aur.2_Intron|BTBD7_uc010two.1_Intron|BTBD7_uc001ybp.2_Missense_Mutation_p.S47L|BTBD7_uc001ybq.3_Missense_Mutation_p.S313L	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	398										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GGTATCTAATGAGATGCTCTC	0.388		NaN											0	0	0	0.006214	0	7	58									
KIAA1409	57578	broad.mit.edu	37	14	94088398	94088398	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:94088398C>T	uc001ybv.1	+	28	4437	c.4354C>T	c.(4354-4356)CTG>TTG	p.L1452L	KIAA1409_uc001ybs.1_Silent_p.L1430L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1607						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGATTTAGATCTGATAGATCT	0.473		NaN											0	0	0	0.00245	0	12	72									
KIAA1409	57578	broad.mit.edu	37	14	94128992	94128992	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:94128992C>T	uc001ybv.1	+	39	6303	c.6220C>T	c.(6220-6222)CAG>TAG	p.Q2074*	KIAA1409_uc001ybs.1_Nonsense_Mutation_p.Q2052*	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2229	Helical; (Potential).					integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTTTGTAATTCAGAATGCCGT	0.418		NaN											0	0	0	0.001168	0	5	29									
HSP90AA1	3320	broad.mit.edu	37	14	102552649	102552649	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:102552649G>A	uc001yku.3	-	2	257	c.67C>T	c.(67-69)CAG>TAG	p.Q23*	HSP90AA1_uc001ykv.3_Nonsense_Mutation_p.Q145*|HSP90AA1_uc001ykw.1_5'UTR|HSP90AA1_uc001ykx.1_Nonsense_Mutation_p.Q12*	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	23					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	ATTTCTGCCTGAAAGGCGAAC	0.468		NaN											0	0	0	0.00245	0	10	91									
KLC1	3831	broad.mit.edu	37	14	104121117	104121117	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:104121117C>T	uc001yno.2	+	2	524	c.216C>T	c.(214-216)ATC>ATT	p.I72I	KLC1_uc010tyd.1_Silent_p.I231I|KLC1_uc010tye.1_Silent_p.I68I|KLC1_uc001ynm.1_Silent_p.I72I|KLC1_uc001ynn.1_Silent_p.I68I|KLC1_uc010tyf.1_Silent_p.I72I	NM_182923	NP_891553	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 2	72					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				CAAACATGATCCGGAAGTCAC	0.423		NaN											0	0	0	0.008291	0	9	61									
KIAA0284	283638	broad.mit.edu	37	14	105354098	105354098	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:105354098G>A	uc010axb.2	+	12	3746	c.3522G>A	c.(3520-3522)CGG>CGA	p.R1174R	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Silent_p.R1104R|KIAA0284_uc001yps.2_Silent_p.R1080R|KIAA0284_uc001ypt.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1174						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		CCATGCCCCGGAAGCGGGCCG	0.692		NaN											0	0	0	0.001168	0	5	12									
AHNAK2	113146	broad.mit.edu	37	14	105405994	105405994	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr14:105405994G>A	uc010axc.1	-	7	15914	c.15794C>T	c.(15793-15795)TCC>TTC	p.S5265F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S5165F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5265						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AATATCTGTGGATGATTTGCT	0.512		NaN											0	0	0	0.008871	0	18	114									
MKRN3	7681	broad.mit.edu	37	15	23811991	23811991	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:23811991G>C	uc001ywh.3	+	1	1538	c.1062G>C	c.(1060-1062)GAG>GAC	p.E354D	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.E354D	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	354	RING-type.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GACAGTTTGAGAACAGGATCG	0.507		NaN											0	0	0	0.003163	0	15	144									
INO80	54617	broad.mit.edu	37	15	41362724	41362724	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:41362724C>T	uc001zni.2	-	13	1840	c.1627G>A	c.(1627-1629)GAT>AAT	p.D543N	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	543	ATP (By similarity).|Helicase ATP-binding.|Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						CCCATTTCATCAGCAAGAATG	0.408		NaN											0	0	0	0.005443	0	21	61									
OIP5	11339	broad.mit.edu	37	15	41624585	41624585	+	Missense_Mutation	SNP	C	C	T	rs148616469		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:41624585C>T	uc001znp.2	-	1	235	c.175G>A	c.(175-177)GAG>AAG	p.E59K	NUSAP1_uc001znq.3_5'Flank|NUSAP1_uc001znr.3_5'Flank|NUSAP1_uc001zns.3_5'Flank|NUSAP1_uc010bce.2_5'Flank|NUSAP1_uc001znt.3_5'Flank|NUSAP1_uc001znv.3_5'Flank|NUSAP1_uc001znu.3_5'Flank|NUSAP1_uc010ucw.1_5'Flank	NM_007280	NP_009211	O43482	MS18B_HUMAN	Opa interacting protein 5	59					cell communication|cell division|CenH3-containing nucleosome assembly at centromere|mitosis	Cajal body|chromatin|chromosome, centromeric region	protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;7.09e-12)|Lung NSC(122;1.14e-09)|all_lung(180;2.56e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)		OV - Ovarian serous cystadenocarcinoma(18;1.49e-16)|GBM - Glioblastoma multiforme(113;1.29e-06)|BRCA - Breast invasive adenocarcinoma(123;0.163)		GCGGCTGGCTCCTCAGCCCCC	0.672		NaN											0	0	0	0.00632	0	21	48									
MGA	23269	broad.mit.edu	37	15	42058963	42058963	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:42058963G>A	uc010ucy.1	+	24	8864	c.8683G>A	c.(8683-8685)GAC>AAC	p.D2895N	MGA_uc010ucz.1_Missense_Mutation_p.D2686N	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2856						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AGGGGAGAGTGACTCTATCAG	0.463		NaN											0	0	0	0.00333	0	19	59									
CAPN3	825	broad.mit.edu	37	15	42691775	42691775	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:42691775C>T	uc001zpn.1	+	10	1585	c.1279C>T	c.(1279-1281)CAG>TAG	p.Q427*	CAPN3_uc001zpk.1_Nonsense_Mutation_p.Q200*|CAPN3_uc001zpl.1_Nonsense_Mutation_p.Q340*|CAPN3_uc010udf.1_Nonsense_Mutation_p.Q340*|CAPN3_uc010udg.1_Nonsense_Mutation_p.Q292*|CAPN3_uc001zpo.1_Nonsense_Mutation_p.Q427*|CAPN3_uc001zpp.1_Nonsense_Mutation_p.Q379*|CAPN3_uc001zpq.1_5'Flank	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	427	Domain III.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		TGACAAGCTTCAGACCTGGAC	0.562		NaN											0	0	0	0.001168	0	6	27									
LEO1	123169	broad.mit.edu	37	15	52258074	52258074	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:52258074G>A	uc002abo.2	-	2	702	c.686C>T	c.(685-687)TCT>TTT	p.S229F	LEO1_uc010bfd.2_Missense_Mutation_p.S229F	NM_138792	NP_620147	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component,	229	Asp-rich.				histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding				0				all cancers(107;0.00264)		TTCATCATCAGAATTCTGTTT	0.423		NaN											0	0	0	0.00361	0	56	131									
RNF111	54778	broad.mit.edu	37	15	59358969	59358969	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:59358969C>G	uc002afv.2	+	6	1652	c.1373C>G	c.(1372-1374)TCA>TGA	p.S458*	RNF111_uc002afs.2_Nonsense_Mutation_p.S458*|RNF111_uc002aft.2_Nonsense_Mutation_p.S458*|RNF111_uc002afu.2_Nonsense_Mutation_p.S458*|RNF111_uc002afw.2_Nonsense_Mutation_p.S458*|RNF111_uc002afx.2_5'UTR	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	458	Ser-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		CAAGATGACTCAAGGAGAACT	0.398		NaN											0	0	0	0.007291	0	23	38									
PDCD7	10081	broad.mit.edu	37	15	65426045	65426045	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:65426045G>T	uc002aol.2	-	1	130	c.75C>A	c.(73-75)TTC>TTA	p.F25L		NM_005707	NP_005698	Q8N8D1	PDCD7_HUMAN	programmed cell death 7	25	Pro-rich.				apoptosis|induction of apoptosis|response to glucocorticoid stimulus	U12-type spliceosomal complex					0						GCGGACAGCCGAAAGGAGCAG	0.726		NaN											1	0	0.000602214	0.000602	0.000616972	4	6									
C15orf27	123591	broad.mit.edu	37	15	76463343	76463343	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:76463343G>A	uc002bbq.2	+	7	678	c.523G>A	c.(523-525)GGG>AGG	p.G175R	C15orf27_uc010bkp.2_5'UTR|C15orf27_uc002bbr.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	175	Helical; (Potential).					integral to membrane					0						GGTGTTTGACGGGGCTGTGAT	0.617		NaN											0	0	0	0.004656	0	20	19									
IREB2	3658	broad.mit.edu	37	15	78790409	78790409	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:78790409C>T	uc002bdr.2	+	22	2978	c.2816C>T	c.(2815-2817)TCG>TTG	p.S939L	IREB2_uc010unb.1_Missense_Mutation_p.S689L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	939							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		GTGATTGCTTCGTTTGAAGAT	0.358		NaN											0	0	0	0.00499	0	15	87									
PDE8A	5151	broad.mit.edu	37	15	85619974	85619974	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:85619974G>C	uc002blh.2	+	5	691	c.502G>C	c.(502-504)GAA>CAA	p.E168Q	PDE8A_uc002bli.2_Missense_Mutation_p.E168Q|PDE8A_uc010bnc.2_5'UTR|PDE8A_uc010bnd.2_5'UTR|PDE8A_uc002blj.2_5'UTR|PDE8A_uc002blk.2_5'UTR	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	168					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			GGTGGATAGAGAAGAGTTGTC	0.289		NaN											0	0	0	0.010729	0	9	103									
MFGE8	4240	broad.mit.edu	37	15	89449884	89449884	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:89449884G>A	uc002bng.3	-	4	626	c.513C>T	c.(511-513)TTC>TTT	p.F171F	MFGE8_uc002bnf.3_Silent_p.F59F|MFGE8_uc002bnh.3_Silent_p.F171F|MFGE8_uc010bnn.2_Silent_p.F163F|MFGE8_uc010upq.1_Silent_p.F127F|MFGE8_uc010upr.1_Silent_p.F171F|MFGE8_uc010bno.2_Silent_p.F127F	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	171	F5/8 type C 1.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					CATCATGGATGAAATCGAATT	0.512		NaN											0	0	0	0.005443	0	23	94									
FES	2242	broad.mit.edu	37	15	91433455	91433455	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:91433455G>A	uc002bpv.2	+	9	1279	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	FES_uc010uqj.1_Missense_Mutation_p.E337K|FES_uc010uqk.1_Missense_Mutation_p.E377K|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.E337K|FES_uc002bpx.2_Missense_Mutation_p.E395K|FES_uc002bpy.2_Missense_Mutation_p.E337K	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	395					axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GGGCCCCGGCGAGCCCCCGCC	0.716		NaN											0	0	0	0.003163	0	13	79									
CHD2	1106	broad.mit.edu	37	15	93486105	93486105	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:93486105G>C	uc002bsp.2	+	9	1434	c.859G>C	c.(859-861)GAA>CAA	p.E287Q	CHD2_uc002bsm.1_Missense_Mutation_p.E287Q|CHD2_uc002bsn.2_Missense_Mutation_p.E287Q|CHD2_uc002bso.1_Missense_Mutation_p.E287Q|CHD2_uc010urb.1_Missense_Mutation_p.E300Q|CHD2_uc010bof.1_RNA	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	287	Chromo 1.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			ATATGCGATTGAAGCTAATGG	0.418		NaN											0	0	0	0.010729	0	8	58									
CHD2	1106	broad.mit.edu	37	15	93522446	93522446	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:93522446C>T	uc002bsp.2	+	22	3384	c.2809C>T	c.(2809-2811)CAT>TAT	p.H937Y	CHD2_uc002bso.1_Missense_Mutation_p.H937Y|CHD2_uc010bog.1_3'UTR|CHD2_uc010boh.1_Missense_Mutation_p.H131Y	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	937	Helicase C-terminal.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GGTATTAGATCATCTGGTGAT	0.473		NaN											0	0	0	0.00361	0	59	219									
CHD2	1106	broad.mit.edu	37	15	93527686	93527686	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:93527686G>C	uc002bsp.2	+	25	3768	c.3193G>C	c.(3193-3195)GAA>CAA	p.E1065Q	CHD2_uc002bso.1_Missense_Mutation_p.E1065Q	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1065	Glu-rich.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GAAGGAGCTAGAAGAAATTTA	0.408		NaN											0	0	0	0.001984	0	6	24									
MCTP2	55784	broad.mit.edu	37	15	94986184	94986184	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:94986184G>C	uc002btj.2	+	18	2310	c.2245G>C	c.(2245-2247)GAC>CAC	p.D749H	MCTP2_uc010boj.2_Missense_Mutation_p.D478H|MCTP2_uc010bok.2_Intron|MCTP2_uc002btl.2_Missense_Mutation_p.D337H	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	749					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GGATGAAGATGACAAGGTGCG	0.383		NaN											0	0	0	0.00308	0	8	64									
LRRC28	123355	broad.mit.edu	37	15	99892583	99892583	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:99892583G>A	uc002bva.1	+	7	757	c.602G>A	c.(601-603)CGA>CAA	p.R201Q	LRRC28_uc010urs.1_RNA|LRRC28_uc002bvb.1_Missense_Mutation_p.R47Q|LRRC28_uc010urt.1_Missense_Mutation_p.R15Q|LRRC28_uc002bvc.1_Missense_Mutation_p.R201Q|LRRC28_uc010uru.1_Missense_Mutation_p.R132Q|LRRC28_uc002bvd.1_Intron	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	201	LRR 8.										0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			GATTTAGGTCGATCTCGAGAA	0.348		NaN											0	0	0	0.003163	0	12	106									
LRRK1	79705	broad.mit.edu	37	15	101566280	101566280	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr15:101566280C>G	uc002bwr.2	+	17	2662	c.2343C>G	c.(2341-2343)CTC>CTG	p.L781L	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	781	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGCTGGCACTCTGCCGCTCCC	0.597		NaN											0	0	0	0.009535	0	25	129									
RAB40C	57799	broad.mit.edu	37	16	676021	676021	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:676021C>T	uc002chr.2	+	5	581	c.465C>T	c.(463-465)GTC>GTT	p.V155V	RAB40C_uc002chq.2_Silent_p.V136V	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	155					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				TCTTTGAGGTCAGCCCCCTGT	0.607		NaN											0	0	0	0.00333	0	21	142									
PTX4	390667	broad.mit.edu	37	16	1536456	1536456	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:1536456G>A	uc010uvf.1	-	3	906	c.906C>T	c.(904-906)TCC>TCT	p.S302S		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	307	Pentaxin.					extracellular region	metal ion binding				0						CCAGGCGGCCGGAGGCCGTGC	0.647		NaN											0	0	0	0.008871	0	17	62									
IFT140	9742	broad.mit.edu	37	16	1575300	1575300	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:1575300G>A	uc002cmb.2	-	22	3158	c.2796C>T	c.(2794-2796)TTC>TTT	p.F932F	IFT140_uc002clz.2_Silent_p.F545F	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	932	TPR 3.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGGGCACCTCGAAGCGGTGCG	0.627		NaN											0	0	0	0.00333	0	18	135									
AMDHD2	51005	broad.mit.edu	37	16	2578543	2578543	+	Missense_Mutation	SNP	T	T	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2578543T>C	uc002cqq.2	+	8	1050	c.953T>C	c.(952-954)CTG>CCG	p.L318P	AMDHD2_uc002cqp.2_Missense_Mutation_p.L318P|AMDHD2_uc010uwc.1_Missense_Mutation_p.L318P|AMDHD2_uc010uwd.1_Missense_Mutation_p.L82P	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	318					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						GTGGACGGTCTGACGGCCTAC	0.701		NaN											0	0	0	0.000602	0	5	65									
SRRM2	23524	broad.mit.edu	37	16	2811715	2811715	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2811715G>A	uc002crk.2	+	11	1735	c.1186G>A	c.(1186-1188)GAG>AAG	p.E396K	SRRM2_uc002crj.1_Missense_Mutation_p.E300K|SRRM2_uc002crl.1_Missense_Mutation_p.E396K|SRRM2_uc010bsu.1_Missense_Mutation_p.E300K	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	396	Pro-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCCCCCATCTGAGGCCTCTCC	0.607		NaN											0	0	0	0.00632	0	21	142									
SRRM2	23524	broad.mit.edu	37	16	2812166	2812166	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2812166G>C	uc002crk.2	+	11	2186	c.1637G>C	c.(1636-1638)AGA>ACA	p.R546T	SRRM2_uc002crj.1_Missense_Mutation_p.R450T|SRRM2_uc002crl.1_Missense_Mutation_p.R546T|SRRM2_uc010bsu.1_Missense_Mutation_p.R450T	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	546	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCTAGGAGCAGAAATACCCAG	0.597		NaN											0	0	0	0.001168	0	4	31									
SRRM2	23524	broad.mit.edu	37	16	2812176	2812176	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2812176G>A	uc002crk.2	+	11	2196	c.1647G>A	c.(1645-1647)CAG>CAA	p.Q549Q	SRRM2_uc002crj.1_Silent_p.Q453Q|SRRM2_uc002crl.1_Silent_p.Q549Q|SRRM2_uc010bsu.1_Silent_p.Q453Q	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	549	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GAAATACCCAGAGAAGAGGCA	0.612		NaN											0	0	0	0.001984	0	5	31									
SRRM2	23524	broad.mit.edu	37	16	2812362	2812362	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2812362G>C	uc002crk.2	+	11	2382	c.1833G>C	c.(1831-1833)CGG>CGC	p.R611R	SRRM2_uc002crj.1_Silent_p.R515R|SRRM2_uc002crl.1_Silent_p.R611R|SRRM2_uc010bsu.1_Silent_p.R515R	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	611	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CACCAGCCCGGAGGGGCAGGT	0.622		NaN											0	0	0	0.001168	0	6	85									
SRRM2	23524	broad.mit.edu	37	16	2814751	2814751	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2814751G>C	uc002crk.2	+	11	4771	c.4222G>C	c.(4222-4224)GAT>CAT	p.D1408H	SRRM2_uc002crj.1_Missense_Mutation_p.D1312H|SRRM2_uc002crl.1_Missense_Mutation_p.D1408H|SRRM2_uc010bsu.1_Missense_Mutation_p.D1312H	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1408	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						ACCTGTGCTTGATGCTGTACC	0.473		NaN											0	0	0	0.010771	0	39	226									
PRSS33	260429	broad.mit.edu	37	16	2835105	2835105	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:2835105G>A	uc002cro.1	-	5	742	c.582C>T	c.(580-582)GAC>GAT	p.D194D	PRSS33_uc002crp.1_Missense_Mutation_p.R104W|PRSS33_uc010uwh.1_Silent_p.D194D	NM_152891	NP_690851	Q8NF86	PRS33_HUMAN	protease, serine, 33 precursor	194	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0						GGTAGAGGCCGTCGCAGGTGC	0.687		NaN											0	0	0	0.009096	0	3	11									
ZNF213	7760	broad.mit.edu	37	16	3191255	3191255	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:3191255C>T	uc010uws.1	+	6	1734	c.1287C>T	c.(1285-1287)TTC>TTT	p.F429F	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_3'UTR|ZNF213_uc010bth.2_Silent_p.F429F|ZNF213_uc010uwt.1_3'UTR|uc002cuf.1_5'Flank	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	429	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGCGGCCCTTCGGCTGCGGAG	0.672		NaN											0	0	0	0.001855	0	11	99									
ZNF200	7752	broad.mit.edu	37	16	3274032	3274032	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:3274032C>T	uc002cuj.2	-	5	1680	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	ZNF200_uc002cum.3_Missense_Mutation_p.E349K|ZNF200_uc010bti.2_Missense_Mutation_p.E349K|ZNF200_uc002cuk.2_Missense_Mutation_p.E350K|ZNF200_uc002cui.2_Missense_Mutation_p.E349K|ZNF200_uc002cul.3_Missense_Mutation_p.E349K	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	350	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AGCACAAACTCCTCATTCTTT	0.448		NaN											0	0	0	0.004007	0	14	153									
TFAP4	7023	broad.mit.edu	37	16	4310139	4310139	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:4310139G>A	uc010uxg.1	-	6	1028	c.774C>T	c.(772-774)GTC>GTT	p.V258V		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	258					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CAGAGTTGATGACCGAGGAGG	0.622		NaN											0	0	0	0.005443	0	24	172									
PPL	5493	broad.mit.edu	37	16	4934113	4934113	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:4934113C>G	uc002cyd.1	-	22	4633	c.4543G>C	c.(4543-4545)GAG>CAG	p.E1515Q		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1515	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CTCTGGATCTCTTGCTCGGTG	0.637		NaN											0	0	0	0.004482	0	8	48									
PPL	5493	broad.mit.edu	37	16	4934819	4934819	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:4934819C>T	uc002cyd.1	-	22	3927	c.3837G>A	c.(3835-3837)CTG>CTA	p.L1279L		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1279	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						TGGTGTCTTTCAGGGCCTGGA	0.532		NaN											0	0	0	0.003271	0	27	132									
PPL	5493	broad.mit.edu	37	16	4934921	4934921	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:4934921C>T	uc002cyd.1	-	22	3825	c.3735G>A	c.(3733-3735)GAG>GAA	p.E1245E		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1245	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GAAGCTCCTTCTCCATCTCAG	0.532		NaN											0	0	0	0.008291	0	10	70									
PPL	5493	broad.mit.edu	37	16	4935359	4935359	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:4935359C>T	uc002cyd.1	-	22	3387	c.3297G>A	c.(3295-3297)AAG>AAA	p.K1099K		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1099	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						TCTCTAGCCTCTTGAGCTTGT	0.632		NaN											0	0	0	0.008871	0	17	114									
PPL	5493	broad.mit.edu	37	16	4939015	4939015	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:4939015G>C	uc002cyd.1	-	19	2451	c.2361C>G	c.(2359-2361)ATC>ATG	p.I787M		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	787	Spectrin 4.|Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						AATTGGCACAGATCTTCTGTA	0.448		NaN											0	0	0	0.00361	0	55	485									
FAM86A	196483	broad.mit.edu	37	16	5145479	5145479	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:5145479C>T	uc002cyo.2	-	2	182	c.133G>A	c.(133-135)GAG>AAG	p.E45K	FAM86A_uc002cyp.2_Missense_Mutation_p.E45K	NM_201400	NP_958802	Q96G04	FA86A_HUMAN	hypothetical protein LOC196483 isoform 1	45											0						CGCAGCAGCTCAGAATCTGAT	0.478		NaN											0	0	0	0.006122	0	14	79									
ATF7IP2	80063	broad.mit.edu	37	16	10576009	10576009	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:10576009G>A	uc002czu.2	+	12	2179	c.1952G>A	c.(1951-1953)AGA>AAA	p.R651K	ATF7IP2_uc002czv.2_3'UTR|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Missense_Mutation_p.R195K|ATF7IP2_uc002czw.2_Missense_Mutation_p.R651K|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	651	Fibronectin type-III.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GCTTCCAACAGATACTATTTT	0.338		NaN											0	0	0	0.004482	0	7	47									
RUNDC2A	84127	broad.mit.edu	37	16	12145758	12145758	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:12145758C>T	uc002dbw.1	+	8	865	c.803C>T	c.(802-804)TCA>TTA	p.S268L	SNX29_uc002dby.3_5'Flank	NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	268										ovary(1)	1						AACATAATCTCATTTGATGAT	0.433		NaN	T	CIITA	PMBL|Hodgkin Lymphona|								0	0	0	0.010729	0	8	45									
DNAH3	55567	broad.mit.edu	37	16	20999081	20999081	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:20999081G>C	uc010vbe.1	-	46	6816	c.6816C>G	c.(6814-6816)GTC>GTG	p.V2272V	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2272	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCAGGTTAAAGACGTAATGTG	0.483		NaN											0	0	0	0.00245	0	13	78									
AQP8	343	broad.mit.edu	37	16	25232864	25232864	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:25232864C>G	uc002doc.2	+	3	429	c.347C>G	c.(346-348)TCA>TGA	p.S116*		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	116	Helical; (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		TACTGGGTCTCACAGCTGCTC	0.627		NaN											0	0	0	0.003755	0	26	214									
SRCAP	10847	broad.mit.edu	37	16	30715622	30715622	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	RNASeq			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:30715622G>A	uc002dze.1	+	4	677	c.292G>A	c.(292-294)GAA>AAA	p.E98K	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_5'Flank	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	98					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CGAAATTGCAGAACAGGCCAA	0.493		NaN											0	0	0	0.006999	0	31	178									
STX4	6810	broad.mit.edu	37	16	31049270	31049270	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:31049270C>T	uc002eal.2	+	6	626	c.402C>T	c.(400-402)TTC>TTT	p.F134F	STX4_uc002eak.2_Silent_p.F132F|STX4_uc002eam.2_Silent_p.F56F	NM_004604	NP_004595	Q12846	STX4_HUMAN	syntaxin 4	134	Cytoplasmic (Potential).|Potential.				intracellular protein transport|platelet activation|post-Golgi vesicle-mediated transport	basolateral plasma membrane|cell surface|cytosol|integral to membrane|plasma membrane enriched fraction|specific granule|vacuole	SNAP receptor activity				0						CCCAGCAATTCGTGGAGCTCA	0.547		NaN											0	0	0	0.010729	0	10	106									
ITGAM	3684	broad.mit.edu	37	16	31309204	31309204	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:31309204G>A	uc002ebq.2	+	14	1734	c.1636G>A	c.(1636-1638)GAG>AAG	p.E546K	ITGAM_uc002ebr.2_Missense_Mutation_p.E547K|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Intron	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	546	FG-GAP 6.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CCCAGGAGAGGAGGACAACCG	0.617		NaN											0	0	0	0.008871	0	19	158									
ARMC5	79798	broad.mit.edu	37	16	31473868	31473868	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:31473868C>T	uc002ecc.2	+	3	1529	c.1000C>T	c.(1000-1002)CGC>TGC	p.R334C	ARMC5_uc010vfn.1_Missense_Mutation_p.R429C|ARMC5_uc010vfo.1_Missense_Mutation_p.R366C|ARMC5_uc002eca.3_Missense_Mutation_p.R334C|ARMC5_uc010vfp.1_Intron|ARMC5_uc002ecb.2_Missense_Mutation_p.R334C	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	334	ARM 5.						binding			pancreas(1)	1						GCTCCGGCAGCGCCGGGATCC	0.647		NaN											0	0	0	0.008871	0	16	121									
SLC5A2	6524	broad.mit.edu	37	16	31499002	31499002	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:31499002C>T	uc002ecf.3	+	7	826	c.807C>T	c.(805-807)CCC>CCT	p.P269P	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	269	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						TCCGGCACCCCGTGACCGGGG	0.667		NaN											0	0	0	0.010504	0	17	80									
ABCC12	94160	broad.mit.edu	37	16	48177916	48177916	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:48177916G>A	uc002efc.1	-	2	526	c.180C>T	c.(178-180)CTC>CTT	p.L60L	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Silent_p.L60L|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	60						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TCACCGGCGTGAGCCAGGAAA	0.567		NaN											0	0	0	0.00245	0	12	101									
NOD2	64127	broad.mit.edu	37	16	50745519	50745519	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:50745519C>G	uc002egm.1	+	4	1802	c.1697C>G	c.(1696-1698)TCA>TGA	p.S566*	NOD2_uc010cbk.1_Nonsense_Mutation_p.S539*|NOD2_uc002egl.1_Nonsense_Mutation_p.S344*|NOD2_uc010cbl.1_Nonsense_Mutation_p.S344*|NOD2_uc010cbm.1_Nonsense_Mutation_p.S344*|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	566	NACHT.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TACGTGTTCTCAGCCCAGCAG	0.647		NaN											0	0	0	0.00308	0	6	52									
IRX5	10265	broad.mit.edu	37	16	54967531	54967531	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:54967531C>T	uc002ehv.2	+	3	1198	c.1198C>T	c.(1198-1200)CGG>TGG	p.R400W	IRX5_uc002ehw.2_Missense_Mutation_p.R334W	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	400					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						GGTGCTGTCCCGGCCTCTCTA	0.711		NaN											0	0	0	0.006214	0	9	39									
GPR56	9289	broad.mit.edu	37	16	57695626	57695626	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:57695626C>G	uc002emb.2	+	14	1992	c.1700C>G	c.(1699-1701)TCC>TGC	p.S567C	GPR56_uc002ema.1_Missense_Mutation_p.S392C|GPR56_uc002emc.2_Missense_Mutation_p.S561C|GPR56_uc002emf.2_Missense_Mutation_p.S561C|GPR56_uc010vhs.1_Missense_Mutation_p.S567C|GPR56_uc002emd.2_Missense_Mutation_p.S561C|GPR56_uc002eme.2_Missense_Mutation_p.S561C|GPR56_uc010vht.1_Missense_Mutation_p.S566C|GPR56_uc002emg.3_Missense_Mutation_p.S561C|GPR56_uc010vhu.1_Missense_Mutation_p.S386C	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	567	Extracellular (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						ATCCGGGACTCCCTGGTCAGC	0.552		NaN											0	0	0	0.001168	0	6	32									
CDH11	1009	broad.mit.edu	37	16	64981694	64981694	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:64981694G>A	uc002eoi.2	-	13	2637	c.2203C>T	c.(2203-2205)CCT>TCT	p.P735S	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_3'UTR|CDH11_uc010vin.1_Missense_Mutation_p.P609S	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	735	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TCATAAGGAGGAGCCGTGGGG	0.567		NaN	T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			0	0	0	0.00245	0	14	41									
CDH11	1009	broad.mit.edu	37	16	65016069	65016069	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:65016069C>T	uc002eoi.2	-	8	1569	c.1135G>A	c.(1135-1137)GAG>AAG	p.E379K	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Missense_Mutation_p.E379K|CDH11_uc010vin.1_Missense_Mutation_p.E253K|CDH11_uc002eok.1_RNA	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	379	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		ATAGGGGGCTCATCAGCATCT	0.527		NaN	T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			0	0	0	0.001984	0	5	77									
CDH16	1014	broad.mit.edu	37	16	66949265	66949265	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:66949265G>T	uc002eql.2	-	6	514	c.441C>A	c.(439-441)TTC>TTA	p.F147L	CDH16_uc010cdy.2_Missense_Mutation_p.F147L|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	147	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		AAGCCTCAAGGAAGAGGAAGG	0.582		NaN											1	0	4.72057e-08	0.003954	4.96177e-08	18	75									
B3GNT9	84752	broad.mit.edu	37	16	67183434	67183434	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:67183434G>C	uc002erf.2	-	2	1276	c.955C>G	c.(955-957)CTG>GTG	p.L319V	uc002erg.1_5'UTR	NM_033309	NP_171608	Q6UX72	B3GN9_HUMAN	UDP-GlcNAc:betaGal	319	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0						CACATGCCCAGAAAGACGTCG	0.687		NaN											0	0	0	0.00308	0	5	12									
B3GNT9	84752	broad.mit.edu	37	16	67183755	67183755	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:67183755G>C	uc002erf.2	-	2	955	c.634C>G	c.(634-636)CTA>GTA	p.L212V	uc002erg.1_Missense_Mutation_p.R53T	NM_033309	NP_171608	Q6UX72	B3GN9_HUMAN	UDP-GlcNAc:betaGal	212	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0						GCCCAGGCTAGAAAGTGGATC	0.592		NaN											0	0	0	0.009096	0	4	15									
ELMO3	79767	broad.mit.edu	37	16	67233112	67233112	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:67233112G>A	uc002esa.2	+	1	85	c.42G>A	c.(40-42)CCG>CCA	p.P14P	ELMO3_uc002esb.2_Silent_p.P14P|ELMO3_uc002esc.2_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	Error:Variant_position_missing_in_Q96BJ8_after_alignment					apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		GCGGGACACCGAGGTCAGGTC	0.687		NaN											0	0	0	0.001168	0	4	16									
SLC12A4	6560	broad.mit.edu	37	16	67985768	67985768	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:67985768C>T	uc002euz.2	-	8	1231	c.1090G>A	c.(1090-1092)GAG>AAG	p.E364K	SLC12A4_uc010ceu.2_Missense_Mutation_p.E358K|SLC12A4_uc010vkh.1_Missense_Mutation_p.E333K|SLC12A4_uc010vki.1_Missense_Mutation_p.E364K|SLC12A4_uc010vkj.1_Missense_Mutation_p.E366K|SLC12A4_uc002eva.2_Missense_Mutation_p.E364K|SLC12A4_uc002evb.2_RNA	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	364	Helical; (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	CCAGGGATCTCGGTCACATTG	0.607		NaN											0	0	0	0.001168	0	6	32									
COG4	25839	broad.mit.edu	37	16	70517820	70517820	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:70517820G>A	uc002ezc.2	-	14	1774	c.1763C>T	c.(1762-1764)GCC>GTC	p.A588V	COG4_uc002eza.2_5'UTR|COG4_uc002ezb.2_Missense_Mutation_p.A44V|COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Missense_Mutation_p.A567V|COG4_uc002eze.2_Missense_Mutation_p.A282V	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	584					Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				GTCAAACTTGGCCTGGGCCTG	0.582		NaN											0	0	0	0.002299	0	21	120									
COG4	25839	broad.mit.edu	37	16	70551628	70551628	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:70551628C>T	uc002ezc.2	-	3	281	c.270G>A	c.(268-270)CTG>CTA	p.L90L	COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Silent_p.L90L|COG4_uc002eze.2_5'UTR	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	86	Interacts with STX5.				Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				CTCCCTCAATCAGCTGCAGAT	0.453		NaN											0	0	0	0.003954	0	20	112									
HYDIN	54768	broad.mit.edu	37	16	71220736	71220736	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:71220736G>C	uc002ezr.2	-	2	191	c.63C>G	c.(61-63)TTC>TTG	p.F21L	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.F21L|HYDIN_uc010vmc.1_Missense_Mutation_p.F38L|HYDIN_uc010vmd.1_Missense_Mutation_p.F48L|HYDIN_uc002ezw.3_Missense_Mutation_p.F38L	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	21										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GAAATCCTTTGAACATATTGA	0.383		NaN											0	0	0	0.000602	0	4	33									
CHST4	10164	broad.mit.edu	37	16	71571634	71571634	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:71571634G>A	uc002fan.2	+	2	1235	c.1054G>A	c.(1054-1056)GAT>AAT	p.D352N	CHST4_uc002fao.2_Missense_Mutation_p.D352N	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	352	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						AGCCTGTGGCGATGCCATGAA	0.512		NaN									OREG0023923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.000602	0	5	47									
KARS	3735	broad.mit.edu	37	16	75681495	75681495	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:75681495C>T	uc002feq.2	-	1	91	c.43G>A	c.(43-45)GAG>AAG	p.E15K	KARS_uc002fer.2_5'UTR|KARS_uc002fes.2_5'UTR|KARS_uc010cha.1_Intron|TERF2IP_uc002fet.1_5'Flank	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	15				Missing: Loss of nuclear localization, but no effect on packaging into HIV-1.	interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	AGTTTCGGCTCGCTGCCATCC	0.587		NaN											0	0	0	0.004482	0	7	38									
ADAMTS18	170692	broad.mit.edu	37	16	77393224	77393224	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:77393224G>A	uc002ffc.3	-	8	1732	c.1313C>T	c.(1312-1314)TCA>TTA	p.S438L	ADAMTS18_uc010chc.1_Missense_Mutation_p.S26L|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S134L|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	438	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTTGTGCCCTGACTCATGAGC	0.463		NaN											0	0	0	0.000602	0	4	22									
ZC3H18	124245	broad.mit.edu	37	16	88690429	88690429	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:88690429C>T	uc002fky.2	+	11	2057	c.1857C>T	c.(1855-1857)ATC>ATT	p.I619I	ZC3H18_uc010voz.1_Silent_p.I643I|ZC3H18_uc010chw.2_RNA	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	619	Ser-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GACCTTCCATCAGAACCAAGG	0.672		NaN											0	0	0	0.009535	0	23	155									
TUBB3	10381	broad.mit.edu	37	16	90002120	90002120	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr16:90002120G>A	uc002fph.1	+	4	1326	c.1261G>A	c.(1261-1263)GAG>AAG	p.E421K	TUBB3_uc002fpf.2_Missense_Mutation_p.E768K|TUBB3_uc010ciz.1_Missense_Mutation_p.E349K|TUBB3_uc002fpg.1_Missense_Mutation_p.E275K|TUBB3_uc002fpi.1_Missense_Mutation_p.E349K|TUBB3_uc002fpj.1_Missense_Mutation_p.E349K|TUBB3_uc010cjb.1_Missense_Mutation_p.E275K|TUBB3_uc002fpk.1_Missense_Mutation_p.E275K	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	421					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		CCTGGTGTCCGAGTACCAGCA	0.632		NaN											0	0	0	0.003954	0	19	106									
OR1E2	8388	broad.mit.edu	37	17	3337109	3337109	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:3337109G>A	uc010vre.1	-	1	27	c.27C>T	c.(25-27)ATC>ATT	p.I9I		NM_003554	NP_003545	P47887	OR1E2_HUMAN	olfactory receptor, family 1, subfamily E,	9	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			large_intestine(1)	1						GGAAGTCTGAGATGCTGGTTT	0.458		NaN											0	0	0	0.002299	0	9	59									
P2RX5	5026	broad.mit.edu	37	17	3593966	3593966	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:3593966G>A	uc002fwi.2	-	4	653	c.369C>T	c.(367-369)GGC>GGT	p.G123G	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Silent_p.G123G|P2RX5_uc010vrx.1_Silent_p.G63G|P2RX5_uc002fwj.2_Silent_p.G99G|P2RX5_uc002fwk.2_Silent_p.G123G|P2RX5_uc002fwl.2_Silent_p.G99G|P2RX5_uc002fwm.1_Silent_p.G123G	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	123	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CATCAGGAATGCCTTCATTCT	0.632		NaN											0	0	0	0.003163	0	12	74									
ZZEF1	23140	broad.mit.edu	37	17	3936223	3936223	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:3936223C>T	uc002fxe.2	-	41	6722	c.6658G>A	c.(6658-6660)GAT>AAT	p.D2220N	ZZEF1_uc002fxh.2_Missense_Mutation_p.D534N|ZZEF1_uc002fxi.2_Missense_Mutation_p.D455N	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2220							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCAATGACATCACGCCACAGT	0.597		NaN											0	0	0	0.00308	0	8	35									
TEKT1	83659	broad.mit.edu	37	17	6719158	6719158	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:6719158C>T	uc002gdt.2	-	4	590	c.480G>A	c.(478-480)CAG>CAA	p.Q160Q	TEKT1_uc010vth.1_Silent_p.Q14Q	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	160	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				CATACCGAATCTGCTCGGAAG	0.532		NaN											0	0	0	0.000602	0	4	52									
TMEM88	92162	broad.mit.edu	37	17	7758849	7758849	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:7758849C>T	uc002giy.2	+	2	306	c.297C>T	c.(295-297)CTC>CTT	p.L99L	CYB5D1_uc010cnn.1_5'Flank|CYB5D1_uc002gjb.3_5'Flank	NM_203411	NP_981956	Q6PEY1	TMM88_HUMAN	transmembrane protein 88	99	Helical; (Potential).					integral to membrane					0		all_cancers(10;0.00528)|Prostate(122;0.202)				TCCTGCTCCTCGTGCCGCTGC	0.682		NaN											0	0	0	0.00632	0	25	136									
GUCY2D	3000	broad.mit.edu	37	17	7910802	7910802	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:7910802G>T	uc002gjt.2	+	6	1596	c.1522G>T	c.(1522-1524)GAC>TAC	p.D508Y		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	508	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				CCTGACCGTGGACGACATCAC	0.562		NaN											1	0	1.19451e-25	0.00361	1.29115e-25	38	189									
MYH2	4620	broad.mit.edu	37	17	10441042	10441042	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:10441042G>C	uc010coi.2	-	15	1655	c.1527C>G	c.(1525-1527)ATC>ATG	p.I509M	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.I509M|MYH2_uc010coj.2_Missense_Mutation_p.I509M	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	509	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACGTCCACTCGATGCCTTCCT	0.493		NaN											0	0	0	0.012319	0	17	199									
C17orf48	56985	broad.mit.edu	37	17	10608412	10608412	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:10608412G>A	uc002gmt.2	+	2	244	c.169G>A	c.(169-171)GAA>AAA	p.E57K	C17orf48_uc002gmu.2_RNA|C17orf48_uc002gmv.2_RNA|C17orf48_uc010vvg.1_Missense_Mutation_p.E57K	NM_020233	NP_064618	Q3LIE5	ADPRM_HUMAN	ADP-ribose/CDP-alcohol pyrophosphatase	57							ADP-ribose diphosphatase activity|CDP-glycerol diphosphatase activity|metal ion binding				0						GGGTGCCATTGAAGACTGGAA	0.428		NaN											0	0	0	0.001368	0	13	75									
PMP22	5376	broad.mit.edu	37	17	15162452	15162452	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:15162452G>A	uc002goj.2	-	2	186	c.137C>T	c.(136-138)TCC>TTC	p.S46F	PMP22_uc002gok.2_Missense_Mutation_p.S46F|PMP22_uc002gol.2_Missense_Mutation_p.S46F	NM_153322	NP_696997	Q01453	PMP22_HUMAN	peripheral myelin protein 22	46					peripheral nervous system development|synaptic transmission	integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0884)|BRCA - Breast invasive adenocarcinoma(8;4.92e-06)		ATTTCCTGAGGAAGAGGTGCT	0.463		NaN											0	0	0	0.001368	0	8	75									
TTC19	54902	broad.mit.edu	37	17	15902870	15902870	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:15902870C>G	uc002gph.1	+	1	89	c.71C>G	c.(70-72)TCA>TGA	p.S24*	ZSWIM7_uc002gpe.2_Silent_p.L13L|ZSWIM7_uc002gpf.2_Silent_p.L13L|ZSWIM7_uc002gpg.2_RNA|TTC19_uc010cox.1_RNA	NM_017775	NP_060245	Q6DKK2	TTC19_HUMAN	tetratricopeptide repeat domain 19	Error:Variant_position_missing_in_Q6DKK2_after_alignment					cell cycle|cytokinesis|mitochondrial respiratory chain complex III assembly	centrosome|midbody|mitochondrial inner membrane	protein binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CCATCTCGCTCAGGAGCTCCT	0.746		NaN											0	0	0	0.001984	0	4	21									
NCOR1	9611	broad.mit.edu	37	17	16049769	16049769	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			C	G	C	C		Valid	Somatic	Phase_I	WXS	Fluidigm;RNASeq			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:16049769C>G	uc002gpo.2	-	10	1243	c.1003G>C	c.(1003-1005)GAA>CAA	p.E335Q	NCOR1_uc002gpn.2_Missense_Mutation_p.E335Q|NCOR1_uc002gpp.1_Missense_Mutation_p.E226Q|NCOR1_uc002gpr.2_Missense_Mutation_p.E226Q|NCOR1_uc002gps.1_Missense_Mutation_p.E344Q|NCOR1_uc010coz.1_Missense_Mutation_p.E151Q|NCOR1_uc010cpb.1_Missense_Mutation_p.E344Q|NCOR1_uc010cpa.1_Missense_Mutation_p.E335Q	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	335	Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTTTTGCTTTCTTTAGCTTTC	0.368		NaN											0	0	0	0.008291	0	8	48									
RAI1	10743	broad.mit.edu	37	17	17700429	17700429	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:17700429G>A	uc002grm.2	+	3	4636	c.4167G>A	c.(4165-4167)CAG>CAA	p.Q1389Q	RAI1_uc002grn.1_Silent_p.Q1389Q	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1389						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GCACCGGGCAGAAGCTCCCAA	0.537		NaN											0	0	0	0.004007	0	13	79									
FAM83G	644815	broad.mit.edu	37	17	18881778	18881778	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:18881778G>A	uc002guw.2	-	5	1368	c.1201C>T	c.(1201-1203)CAC>TAC	p.H401Y	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	401										ovary(1)|central_nervous_system(1)	2						CTCTCCAGGTGAAGCAGTCCT	0.637		NaN											0	0	0	0.004672	0	3	13									
RNF112	7732	broad.mit.edu	37	17	19316427	19316427	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:19316427C>T	uc010vyw.1	+	4	757	c.558C>T	c.(556-558)CTC>CTT	p.L186L	RNF112_uc010vyu.1_Silent_p.L186L|RNF112_uc010vyv.1_Silent_p.L186L|RNF112_uc010vyx.1_Intron	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	186							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						CCTTCCTCCTCAACCATTTGC	0.682		NaN											0	0	0	0.004482	0	5	84									
SARM1	23098	broad.mit.edu	37	17	26687798	26687798	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:26687798C>G	uc010wah.1	+	5	466	c.459C>G	c.(457-459)TTC>TTG	p.F153L	TMEM199_uc002hba.2_Missense_Mutation_p.F153L	NM_152464	NP_689677	Q6SZW1	SARM1_HUMAN	transmembrane protein 199	Error:Variant_position_missing_in_Q6SZW1_after_alignment					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		TCTTCAATTTCATTGTCACGG	0.502		NaN											0	0	0	0.010504	0	14	108									
KIAA0100	9703	broad.mit.edu	37	17	26964034	26964034	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:26964034G>A	uc002hbu.2	-	15	2025	c.1926C>T	c.(1924-1926)CTC>CTT	p.L642L		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	642						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					TGGAAAGGCTGAGCACTGGGG	0.547		NaN											0	0	0	0.002836	0	25	155									
ERAL1	26284	broad.mit.edu	37	17	27186107	27186107	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:27186107G>A	uc002hcy.1	+	8	1096	c.1086G>A	c.(1084-1086)CAG>CAA	p.Q362Q	ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_Silent_p.Q169Q|ERAL1_uc002hdb.1_Silent_p.Q245Q	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	362	KH type-2.				ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			ACCTGCCCCAGGAGGTGCCTT	0.527		NaN											0	0	0	0.004007	0	13	110									
MYO18A	399687	broad.mit.edu	37	17	27419972	27419972	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:27419972C>T	uc002hdt.1	-	33	5132	c.4974G>A	c.(4972-4974)CTG>CTA	p.L1658L	MYO18A_uc010wbc.1_Silent_p.L1191L|MYO18A_uc002hds.2_Silent_p.L1200L|MYO18A_uc010csa.1_Silent_p.L1621L|MYO18A_uc002hdu.1_Silent_p.L1658L	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1658	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TGGTGCGCTTCAGGTCCTTCC	0.617		NaN											0	0	0	0.001368	0	13	68									
CORO6	84940	broad.mit.edu	37	17	27943163	27943163	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:27943163C>T	uc002hel.2	-	9	1095	c.1093G>A	c.(1093-1095)GAT>AAT	p.D365N	CORO6_uc002hem.2_Missense_Mutation_p.D131N|CORO6_uc002hen.2_Missense_Mutation_p.D131N	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	365					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						CCTGGCGTATCCGGGTACAGA	0.672		NaN											0	0	0	0.003163	0	14	96									
BLMH	642	broad.mit.edu	37	17	28593921	28593921	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:28593921C>T	uc002hez.1	-	11	1435	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	BLMH_uc010wbn.1_Missense_Mutation_p.E313K	NM_000386	NP_000377	Q13867	BLMH_HUMAN	bleomycin hydrolase	400					proteolysis	cytoplasm|nucleus	aminopeptidase activity|carboxypeptidase activity|cysteine-type endopeptidase activity|protein binding			ovary(1)	1						CCATGGTCTTCACCCCATGAA	0.493		NaN											0	0	0	0.000602	0	4	70									
TBC1D29	26083	broad.mit.edu	37	17	28890294	28890294	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:28890294G>A	uc002hfh.2	+	5	453	c.304G>A	c.(304-306)GAG>AAG	p.E102K	TBC1D29_uc002hfi.2_RNA	NM_015594	NP_056409	Q9UFV1	TBC29_HUMAN	TBC1 domain family, member 29	102						intracellular	Rab GTPase activator activity				0		Myeloproliferative disorder(56;0.0255)				GACAGCCTCAGAGAGCAGCAG	0.597		NaN											0	0	0	0.001984	0	6	45									
NF1	4763	broad.mit.edu	37	17	29490350	29490350	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:29490350C>T	uc002hgg.2	+	4	768	c.435C>T	c.(433-435)CTC>CTT	p.L145L	NF1_uc002hge.1_Silent_p.L145L|NF1_uc002hgf.1_Silent_p.L145L|NF1_uc002hgh.2_Silent_p.L145L|NF1_uc010csn.1_Missense_Mutation_p.S41L	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	145			L -> P (in NF1).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(5)|p.?(4)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TATTTTCTCTCAGCTGCAACA	0.418		NaN	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			0	0	0	0.006214	0	7	45									
RAB11FIP4	84440	broad.mit.edu	37	17	29849000	29849000	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:29849000C>T	uc002hgn.1	+	6	1055	c.826C>T	c.(826-828)CAA>TAA	p.Q276*	RAB11FIP4_uc002hgo.2_Nonsense_Mutation_p.Q174*	NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	276	Necessary for interaction with RAB11A, subcellular location, homo- or heterooligomerization.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				TTACTGCTCTCAATGCTGCAA	0.527		NaN											0	0	0	0.002299	0	19	141									
RHOT1	55288	broad.mit.edu	37	17	30503214	30503214	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:30503214G>A	uc002hgz.2	+	6	550	c.311G>A	c.(310-312)AGA>AAA	p.R104K	RHOT1_uc002hgw.2_Missense_Mutation_p.R104K|RHOT1_uc002hgy.2_Missense_Mutation_p.R104K|RHOT1_uc002hha.2_5'UTR|RHOT1_uc010csv.2_RNA|RHOT1_uc002hgx.2_5'UTR|RHOT1_uc010wby.1_Missense_Mutation_p.R104K|RHOT1_uc002hhb.2_Missense_Mutation_p.R83K|RHOT1_uc002hgv.2_Missense_Mutation_p.R104K	NM_018307	NP_060777	Q8IXI2	MIRO1_HUMAN	ras homolog gene family, member T1 isoform 3	104	Miro 1.|Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(56;0.0255)|Breast(31;0.116)|Ovarian(249;0.182)				ATAAATGAAAGAACAGACAAA	0.254		NaN											0	0	0	0.009096	0	3	26									
ZNF830	91603	broad.mit.edu	37	17	33288630	33288630	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:33288630G>C	uc002hih.3	+	1	82	c.45G>C	c.(43-45)GTG>GTC	p.V15V	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	15					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				GGAAGCGAGTGATAAATCAGG	0.557		NaN											0	0	0	0.00278	0	21	132									
SLFN5	162394	broad.mit.edu	37	17	33586238	33586238	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:33586238G>C	uc002hjf.3	+	2	646	c.529G>C	c.(529-531)GAT>CAT	p.D177H	SLFN5_uc002hje.2_Missense_Mutation_p.D177H|SLFN5_uc010wcg.1_Missense_Mutation_p.D177H	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	177					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		TGCTTTATTTGATAGAAAGCG	0.398		NaN											0	0	0	0.008291	0	8	74									
ACACA	31	broad.mit.edu	37	17	35615184	35615184	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:35615184G>A	uc002hnm.2	-	13	1692	c.1501C>T	c.(1501-1503)CCA>TCA	p.P501S	ACACA_uc002hnk.2_Missense_Mutation_p.P423S|ACACA_uc002hnl.2_Missense_Mutation_p.P443S|ACACA_uc002hnn.2_Missense_Mutation_p.P501S|ACACA_uc002hno.2_Missense_Mutation_p.P538S|ACACA_uc010cuz.2_Missense_Mutation_p.P501S	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	501	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGGCCCCTTGGACAAGGAACG	0.408		NaN											0	0	0	0.006214	0	7	55									
ACACA	31	broad.mit.edu	37	17	35627678	35627678	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:35627678G>A	uc002hnm.2	-	10	1163	c.972C>T	c.(970-972)GTC>GTT	p.V324V	ACACA_uc002hnk.2_Silent_p.V246V|ACACA_uc002hnl.2_Silent_p.V266V|ACACA_uc002hnn.2_Silent_p.V324V|ACACA_uc002hno.2_Silent_p.V361V|ACACA_uc010cuz.2_Silent_p.V324V	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	324	Biotin carboxylation.|ATP-grasp.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	CTGCATTGTTGACTTTTCTAA	0.363		NaN											0	0	0	0.007413	0	15	151									
STARD3	10948	broad.mit.edu	37	17	37810000	37810000	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:37810000G>C	uc002hsd.2	+	2	340	c.216G>C	c.(214-216)CTG>CTC	p.L72L	STARD3_uc010weg.1_Silent_p.L72L|STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_Silent_p.L72L|STARD3_uc010wei.1_Silent_p.L72L|STARD3_uc002hsf.2_5'UTR	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	72	Helical; (Potential).|MENTAL.				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TCATCGAACTGAATGTGAGTG	0.622		NaN									OREG0024381	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.001855	0	12	107									
ERBB2	2064	broad.mit.edu	37	17	37884048	37884048	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:37884048C>G	uc002hso.2	+	27	3757	c.3519C>G	c.(3517-3519)CTC>CTG	p.L1173L	ERBB2_uc002hsm.2_Silent_p.L1143L|ERBB2_uc010cwa.2_Silent_p.L1158L|ERBB2_uc002hsp.2_Silent_p.L976L|ERBB2_uc010cwb.2_3'UTR|ERBB2_uc010wek.1_Silent_p.L897L	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	1173	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	CCAAGACTCTCTCCCCAGGGA	0.642		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			0	0	0	0.008291	0	8	61									
ERBB2	2064	broad.mit.edu	37	17	37884180	37884180	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:37884180C>T	uc002hso.2	+	27	3889	c.3651C>T	c.(3649-3651)TTC>TTT	p.F1217F	ERBB2_uc002hsm.2_Silent_p.F1187F|ERBB2_uc010cwa.2_Silent_p.F1202F|ERBB2_uc002hsp.2_Silent_p.F1020F|ERBB2_uc010cwb.2_3'UTR|ERBB2_uc010wek.1_Silent_p.F941F	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	1217	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	GCCCAGCCTTCGACAACCTCT	0.627		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			0	0	0	0.00632	0	25	153									
IKZF3	22806	broad.mit.edu	37	17	37947692	37947692	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:37947692G>A	uc002hsu.2	-	5	631	c.569C>T	c.(568-570)ACG>ATG	p.T190M	IKZF3_uc002htd.2_Missense_Mutation_p.T156M|IKZF3_uc010cwd.2_Intron|IKZF3_uc002hsv.2_Missense_Mutation_p.T156M|IKZF3_uc010cwe.2_Intron|IKZF3_uc010cwf.2_Intron|IKZF3_uc010cwg.2_Intron|IKZF3_uc002hsw.2_Missense_Mutation_p.T190M|IKZF3_uc002hsx.2_Intron|IKZF3_uc002hsy.2_Missense_Mutation_p.T190M|IKZF3_uc002hsz.2_Intron|IKZF3_uc002hta.2_Missense_Mutation_p.T190M|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.T103M|IKZF3_uc002htc.2_Intron	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	190	C2H2-type 3.				B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			AAGATGCCCCGTGAGCGCATC	0.463		NaN											0	0	0	0.006122	0	8	141									
IKZF3	22806	broad.mit.edu	37	17	37947694	37947694	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:37947694G>A	uc002hsu.2	-	5	629	c.567C>T	c.(565-567)CTC>CTT	p.L189L	IKZF3_uc002htd.2_Silent_p.L155L|IKZF3_uc010cwd.2_Intron|IKZF3_uc002hsv.2_Silent_p.L155L|IKZF3_uc010cwe.2_Intron|IKZF3_uc010cwf.2_Intron|IKZF3_uc010cwg.2_Intron|IKZF3_uc002hsw.2_Silent_p.L189L|IKZF3_uc002hsx.2_Intron|IKZF3_uc002hsy.2_Silent_p.L189L|IKZF3_uc002hsz.2_Intron|IKZF3_uc002hta.2_Silent_p.L189L|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Silent_p.L102L|IKZF3_uc002htc.2_Intron	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	189	C2H2-type 3.				B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GATGCCCCGTGAGCGCATCTC	0.468		NaN											0	0	0	0.008871	0	10	146									
CASC3	22794	broad.mit.edu	37	17	38318321	38318321	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:38318321G>A	uc010cwt.1	+	5	818	c.523G>A	c.(523-525)GAT>AAT	p.D175N	CASC3_uc010cws.1_Missense_Mutation_p.D175N|CASC3_uc002hue.2_Missense_Mutation_p.D175N	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	175	Necessary for RNA-binding, interaction with MAGOH and localization in nucleus speckles.|Sufficient to form the EJC.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						TGATGATGAAGATCGGAAGAA	0.478		NaN											0	0	0	0.00245	0	13	82									
KRT26	353288	broad.mit.edu	37	17	38928361	38928361	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:38928361G>C	uc002hvf.2	-	1	51	c.5C>G	c.(4-6)TCT>TGT	p.S2C		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	2	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				AAGTCGAAAAGACATGGTGGC	0.547		NaN											0	0	0	0.003163	0	15	92									
KRT15	3866	broad.mit.edu	37	17	39671773	39671773	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:39671773C>T	uc002hwy.2	-	6	1389	c.1198G>A	c.(1198-1200)GAG>AAG	p.E400K	KRT15_uc002hwz.2_Missense_Mutation_p.E302K|KRT15_uc002hxa.2_Missense_Mutation_p.E235K|KRT15_uc002hxb.1_Missense_Mutation_p.E235K	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	400	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				ATCTCCTGCTCCAGCCGTGTC	0.602		NaN											0	0	0	0.008871	0	15	158									
DNAJC7	7266	broad.mit.edu	37	17	40169363	40169363	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:40169363C>T	uc002hyo.2	-	1	309	c.72G>A	c.(70-72)GCG>GCA	p.A24A	DNAJC7_uc010wgb.1_5'Flank|DNAJC7_uc010wgc.1_5'UTR|DNAJC7_uc002hyp.2_5'UTR|DNAJC7_uc010cxw.2_5'Flank|NKIRAS2_uc002hyq.2_5'Flank|NKIRAS2_uc010wgd.1_5'Flank|NKIRAS2_uc002hyr.2_5'Flank|NKIRAS2_uc002hys.2_5'Flank|NKIRAS2_uc010wge.1_5'Flank|NKIRAS2_uc002hyt.2_5'Flank	NM_003315	NP_003306	Q99615	DNJC7_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 7	24					chaperone cofactor-dependent protein refolding	cytoplasm|cytoskeleton|nucleus	heat shock protein binding|unfolded protein binding			ovary(1)	1		all_cancers(22;0.00273)|Breast(137;0.00104)|all_epithelial(22;0.0305)				GTTACCTCTTCGCCTCTTGGT	0.652		NaN											0	0	0	0.00361	0	38	261									
NBR1	4077	broad.mit.edu	37	17	41352511	41352511	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:41352511G>T	uc010czd.2	+	17	2494	c.2354G>T	c.(2353-2355)GGA>GTA	p.G785V	NBR1_uc010diz.2_Missense_Mutation_p.G785V|NBR1_uc010whu.1_Missense_Mutation_p.G785V|NBR1_uc010whv.1_Missense_Mutation_p.G785V|NBR1_uc010whw.1_Missense_Mutation_p.G764V	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	785					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		AGACTCCCTGGAGGGGAGAAC	0.602		NaN											1	0	1.61879e-10	0.001368	1.71401e-10	12	35									
MPP3	4356	broad.mit.edu	37	17	41879098	41879098	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:41879098G>A	uc002iei.3	-	20	1895	c.1729C>T	c.(1729-1731)CAC>TAC	p.H577Y	MPP3_uc002ieh.2_Missense_Mutation_p.H602Y|MPP3_uc002iej.2_RNA	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	577					signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		GGTACCCAGTGAGTGTCCTTG	0.363		NaN											0	0	0	0.00278	0	20	162									
ADAM11	4185	broad.mit.edu	37	17	42850646	42850646	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:42850646C>G	uc002ihh.2	+	11	843	c.843C>G	c.(841-843)CTC>CTG	p.L281L	ADAM11_uc010wjd.1_Silent_p.L81L	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	281	Extracellular (Potential).|Peptidase M12B.				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				AGGAGCAGCTCAACACTCGCA	0.607		NaN											0	0	0	0.007291	0	23	173									
KPNB1	3837	broad.mit.edu	37	17	45747074	45747074	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:45747074G>C	uc002ilt.1	+	11	1591	c.1255G>C	c.(1255-1257)GAC>CAC	p.D419H	KPNB1_uc010wkw.1_Missense_Mutation_p.D274H|KPNB1_uc010wkx.1_Missense_Mutation_p.D203H	NM_002265	NP_002256	Q14974	IMB1_HUMAN	karyopherin beta 1	419	HEAT 6.|Ran-GTP binding.				DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|protein import into nucleus, translocation|ribosomal protein import into nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein domain specific binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ATTAATGAAAGACCCCAGTGT	0.408		NaN											0	0	0	0.012319	0	15	114									
LRRC46	90506	broad.mit.edu	37	17	45909489	45909489	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:45909489G>A	uc002ima.2	+	2	290	c.34G>A	c.(34-36)GAA>AAA	p.E12K	MRPL10_uc010wky.1_5'Flank|MRPL10_uc002ilz.2_5'Flank|MRPL10_uc002ily.2_5'Flank|LRRC46_uc002imb.2_5'UTR	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	12										ovary(1)	1						GGGTCCAGAGGAAGGGGGCGT	0.532		NaN											0	0	0	0.008871	0	16	155									
SCRN2	90507	broad.mit.edu	37	17	45916235	45916235	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:45916235G>C	uc002imd.2	-	5	820	c.694C>G	c.(694-696)CTG>GTG	p.L232V	SCRN2_uc002imc.2_Missense_Mutation_p.L240V|SCRN2_uc002imf.2_Missense_Mutation_p.L232V|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	232					proteolysis		dipeptidase activity			ovary(1)	1						TGCTGGGTCAGGGAGAAGATC	0.662		NaN											0	0	0	0.007291	0	27	202									
IGF2BP1	10642	broad.mit.edu	37	17	47109291	47109291	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:47109291G>A	uc002iom.2	+	5	691	c.357G>A	c.(355-357)ACG>ACA	p.T119T	IGF2BP1_uc010dbj.2_Silent_p.T119T	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	119	RRM 2.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						AGAGTGAGACGGCAGTGGTGA	0.577		NaN									OREG0024529	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00361	0	53	348									
MYST2	11143	broad.mit.edu	37	17	47886483	47886483	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:47886483G>A	uc002ipm.2	+	6	792	c.666G>A	c.(664-666)GTG>GTA	p.V222V	MYST2_uc002ipl.1_Intron|MYST2_uc010wma.1_Silent_p.V83V|MYST2_uc010wmb.1_Intron|MYST2_uc010wmc.1_Intron|MYST2_uc010wmd.1_Silent_p.V66V|MYST2_uc010wme.1_Intron	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	222					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						GGTTGCAGGTGAGAGCACAGA	0.393		NaN											0	0	0	0.00308	0	7	56									
ITGA3	3675	broad.mit.edu	37	17	48155409	48155409	+	Splice_Site	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:48155409G>A	uc010dbl.2	+	17	2604	c.2140_splice	c.e17-1	p.M714_splice	ITGA3_uc010dbm.2_Splice_Site_p.M714_splice	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor						blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						CCTTGTGGCAGATGGAGCTGC	0.592		NaN											0	0	0	0.004007	0	13	158									
PPP1R9B	84687	broad.mit.edu	37	17	48218657	48218657	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:48218657G>C	uc002iqh.3	-	6	1710	c.1707C>G	c.(1705-1707)CTC>CTG	p.L569L		NM_032595	NP_115984	Q96SB3	NEB2_HUMAN	protein phosphatase 1, regulatory subunit 9B	567	PDZ.				cell cycle arrest|cell differentiation|cell migration|filopodium assembly|negative regulation of cell growth|nervous system development|regulation of cell growth by extracellular stimulus|regulation of cell proliferation|regulation of exit from mitosis|RNA splicing	adherens junction|cytoskeleton|dendritic spine|filopodium|lamellipodium|nucleoplasm|protein phosphatase type 1 complex|ruffle membrane|synapse	actin binding|protein phosphatase 1 binding|protein phosphatase inhibitor activity				0						TGGTGTTCCGGAGCACAGACG	0.627		NaN											0	0	0	0.009096	0	3	16									
TOM1L1	10040	broad.mit.edu	37	17	53014503	53014503	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:53014503C>A	uc002iud.2	+	10	1124	c.949C>A	c.(949-951)CTC>ATC	p.L317I	TOM1L1_uc002iuc.2_Missense_Mutation_p.L317I|TOM1L1_uc010dca.1_Missense_Mutation_p.L317I|TOM1L1_uc010wnb.1_Missense_Mutation_p.L310I|TOM1L1_uc010wnc.1_Missense_Mutation_p.L240I|TOM1L1_uc010dbz.2_Missense_Mutation_p.L240I|TOM1L1_uc010wnd.1_Missense_Mutation_p.L205I|TOM1L1_uc010dcb.1_RNA	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	317					intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						ATCTCAAGATCTCCTCGACCT	0.433		NaN											1	0	5.16669e-11	0.010729	5.47956e-11	10	81									
SFRS1	6426	broad.mit.edu	37	17	56082931	56082931	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:56082931C>G	uc002ivi.2	-	4	792	c.583G>C	c.(583-585)GAT>CAT	p.D195H	SFRS1_uc002ivj.2_3'UTR	NM_006924	NP_008855	Q07955	SRSF1_HUMAN	splicing factor, arginine/serine-rich 1 isoform	195	RRM 2.			Missing: In MR-E; loss of ability to activate splicing.|Missing: In MR-D; loss of ability to activate splicing.|Missing: In MR-A; loss of ability to activate splicing.|Missing: In MR-B; strongly inhibits splicing.	mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA 5'-splice site recognition|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytoplasm|nuclear speck	nucleotide binding|RNA binding				0		Colorectal(1115;0.0691)		LUAD - Lung adenocarcinoma(1115;0.247)		CTGGGCCCATCAACTTTAACC	0.463		NaN											0	0	0	0.006214	0	7	83									
SEPT4	5414	broad.mit.edu	37	17	56606496	56606496	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:56606496C>T	uc002iwm.1	-	1	168	c.40G>A	c.(40-42)GAG>AAG	p.E14K	SEPT4_uc002iwk.1_5'Flank|SEPT4_uc010wnw.1_5'Flank|SEPT4_uc002iwl.1_5'Flank|SEPT4_uc002iwn.1_Missense_Mutation_p.E14K|SEPT4_uc002iwo.1_Intron|SEPT4_uc002iwp.1_Intron|SEPT4_uc010wnx.1_Intron|SEPT4_uc010wny.1_Intron|SEPT4_uc010dcy.1_Intron	NM_004574	NP_004565	O43236	SEPT4_HUMAN	septin 4 isoform 1	14					apoptosis|cell cycle|cytokinesis|regulation of apoptosis	cytoskeleton|mitochondrion|nucleus	GTP binding|GTPase activity|protein binding|structural molecule activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTCCTGTCCTCAGGGACAGAA	0.552		NaN											0	0	0	0.004878	0	24	132									
RNFT1	51136	broad.mit.edu	37	17	58040624	58040624	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:58040624C>G	uc002iya.2	-	2	171	c.78G>C	c.(76-78)AAG>AAC	p.K26N	uc002iye.1_5'Flank|RNFT1_uc002iyb.2_RNA|RNFT1_uc002iyc.2_5'UTR|RNFT1_uc010wop.1_Missense_Mutation_p.K26N|RNFT1_uc002iyd.3_Missense_Mutation_p.K26N	NM_016125	NP_057209	Q5M7Z0	RNFT1_HUMAN	PTD016 protein	26						integral to membrane	zinc ion binding				0	all_cancers(5;1.58e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;7.95e-12)|all cancers(12;1.34e-10)			ACCCAGATGTCTTTGCTTCAG	0.433		NaN											0	0	0	0.001368	0	11	75									
MARCH10	162333	broad.mit.edu	37	17	60814201	60814201	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:60814201G>C	uc010ddr.2	-	6	1266	c.1028C>G	c.(1027-1029)TCT>TGT	p.S343C	MARCH10_uc002jag.3_Missense_Mutation_p.S343C|MARCH10_uc010dds.2_Missense_Mutation_p.S381C|MARCH10_uc002jah.2_Missense_Mutation_p.S342C|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	343							ligase activity|zinc ion binding				0						TCTTCTTGAAGAATGACCTCT	0.458		NaN											0	0	0	0.00499	0	16	71									
ACE	1636	broad.mit.edu	37	17	61566065	61566065	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:61566065G>A	uc002jau.1	+	16	2384	c.2362G>A	c.(2362-2364)GAG>AAG	p.E788K	ACE_uc002jav.1_Missense_Mutation_p.E214K|ACE_uc010ddv.1_Missense_Mutation_p.E15K|ACE_uc010wpj.1_Missense_Mutation_p.E214K|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.E98K	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	788	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	ATGGGCATGGGAGGGCTGGCG	0.562		NaN											0	0	0	0.006122	0	16	146									
MAP3K3	4215	broad.mit.edu	37	17	61767079	61767079	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:61767079G>A	uc002jbg.2	+	11	1366	c.1047G>A	c.(1045-1047)AGG>AGA	p.R349R	MAP3K3_uc002jbe.2_Silent_p.R380R|MAP3K3_uc002jbf.2_Silent_p.R380R|MAP3K3_uc002jbh.2_Silent_p.R376R|MAP3K3_uc010wpo.1_Silent_p.R264R|MAP3K3_uc010wpp.1_Silent_p.R345R	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	349					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						TGCAGGAGAGGAATGTGCCAA	0.627		NaN											0	0	0	0.000602	0	3	50									
CACNG5	27091	broad.mit.edu	37	17	64880760	64880760	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:64880760C>T	uc010wqi.1	+	5	789	c.552C>T	c.(550-552)ATC>ATT	p.I184I	CACNG5_uc002jfr.2_Silent_p.I184I|CACNG5_uc010wqj.1_Silent_p.I184I	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	184	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			TCGCCGCCATCTCCTTCCTTT	0.552		NaN											0	0	0	0.002299	0	19	108									
BPTF	2186	broad.mit.edu	37	17	65925584	65925584	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:65925584G>A	uc002jgf.2	+	17	6192	c.6131G>A	c.(6130-6132)GGA>GAA	p.G2044E	BPTF_uc002jge.2_Missense_Mutation_p.G2170E	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2170					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GGCTCTGGAGGAACCACAAGC	0.398		NaN											0	0	0	0.00308	0	8	37									
SDK2	54549	broad.mit.edu	37	17	71348646	71348646	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:71348646G>A	uc010dfm.2	-	41	5724	c.5724C>T	c.(5722-5724)TTC>TTT	p.F1908F	SDK2_uc002jjt.3_Silent_p.F1048F	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1908	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGGGGGTGCCGAAACCATAGT	0.647		NaN											0	0	0	0.000602	0	3	42									
KIF19	124602	broad.mit.edu	37	17	72348427	72348427	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:72348427G>A	uc002jkm.3	+	14	2066	c.1928G>A	c.(1927-1929)GGC>GAC	p.G643D	KIF19_uc002jkl.2_Missense_Mutation_p.G601D	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	643					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CTGGAGGAGGGCAGCCTGGAG	0.672		NaN											0	0	0	0.009096	0	4	44									
GRIN2C	2905	broad.mit.edu	37	17	72846450	72846450	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:72846450G>C	uc002jlt.1	-	6	1542	c.1386C>G	c.(1384-1386)CTC>CTG	p.L462L	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Silent_p.L462L	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	462	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	CCAGCTTCTTGAGGATGTCGA	0.592		NaN											0	0	0	0.003755	0	30	305									
FDXR	2232	broad.mit.edu	37	17	72859310	72859310	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:72859310C>T	uc002jly.2	-	11	1320	c.1233G>A	c.(1231-1233)ATG>ATA	p.M411I	GRIN2C_uc002jlu.1_5'Flank|GRIN2C_uc002jlv.1_5'Flank|FDXR_uc010wri.1_Missense_Mutation_p.M359I|FDXR_uc010wrj.1_Missense_Mutation_p.M409I|FDXR_uc002jlw.2_Missense_Mutation_p.M168I|FDXR_uc002jlx.2_Missense_Mutation_p.M417I|FDXR_uc002jmc.2_Missense_Mutation_p.M383I|FDXR_uc010wrk.1_Missense_Mutation_p.M442I|FDXR_uc010wrl.1_Missense_Mutation_p.M454I|FDXR_uc002jma.2_Missense_Mutation_p.M412I|FDXR_uc010wrm.1_Missense_Mutation_p.M371I|FDXR_uc002jlz.2_Missense_Mutation_p.M403I|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	411					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					AGCTGTCAGTCATGGTTGTGG	0.632		NaN											0	0	0	0.001984	0	5	54									
SUMO2	6613	broad.mit.edu	37	17	73164461	73164461	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:73164461G>C	uc002jne.2	-	4	430	c.261C>G	c.(259-261)TTC>TTG	p.F87L	SUMO2_uc002jnf.2_Missense_Mutation_p.F63L	NM_006937	NP_008868	P61956	SUMO2_HUMAN	SMT3 suppressor of mif two 3 homolog 2 isoform a	87	Ubiquitin-like.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation	nucleus	ubiquitin protein ligase binding				0	all_lung(278;0.14)|Lung NSC(278;0.168)					TCTGCTGTTGGAACACATCAA	0.353		NaN											0	0	0	0.009096	0	2	11									
SAP30BP	29115	broad.mit.edu	37	17	73663485	73663485	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:73663485C>G	uc002jpe.2	+	1	87	c.33C>G	c.(31-33)CTC>CTG	p.L11L	RECQL5_uc010dgk.2_5'Flank|RECQL5_uc010dgl.2_5'Flank|RECQL5_uc002jpb.1_5'Flank|RECQL5_uc002joz.3_5'Flank|RECQL5_uc002jpa.3_5'Flank|SAP30BP_uc010dgm.1_Silent_p.L11L|SAP30BP_uc002jpc.1_RNA|SAP30BP_uc010wsf.1_RNA|SAP30BP_uc010wsg.1_RNA|SAP30BP_uc002jpf.2_Silent_p.L11L	NM_013260	NP_037392	Q9UHR5	S30BP_HUMAN	transcriptional regulator protein	11					apoptosis|induction of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1	all_cancers(13;6.42e-08)		all cancers(21;4.25e-07)|Epithelial(20;9.57e-07)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGTCGTCTCTCGCAGTTTACG	0.607		NaN											0	0	0	0.006122	0	12	73									
ITGB4	3691	broad.mit.edu	37	17	73753570	73753570	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:73753570G>C	uc002jpg.2	+	40	5590	c.5403G>C	c.(5401-5403)GTG>GTC	p.V1801V	ITGB4_uc002jph.2_Silent_p.V1731V|ITGB4_uc002jpi.3_Silent_p.V1731V|ITGB4_uc002jpj.2_Silent_p.V1784V|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1801	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGGAGTTTGTGAGCCGGACAC	0.637		NaN											0	0	0	0.00632	0	24	143									
TRIM47	91107	broad.mit.edu	37	17	73872363	73872363	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:73872363C>T	uc002jpw.2	-	3	1009	c.982G>A	c.(982-984)GAC>AAC	p.D328N	TRIM47_uc002jpv.2_Missense_Mutation_p.D90N	NM_033452	NP_258411	Q96LD4	TRI47_HUMAN	tripartite motif-containing 47	328						cytoplasm|nucleus	zinc ion binding			ovary(2)|prostate(1)|lung(1)|breast(1)	5			Epithelial(20;4.23e-06)|all cancers(21;5.24e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTGACTGAGTCAGCTTCAGGG	0.662		NaN											0	0	0	0.001855	0	10	26									
EVPL	2125	broad.mit.edu	37	17	74005809	74005809	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:74005809G>A	uc002jqi.2	-	22	3705	c.3477C>T	c.(3475-3477)CTC>CTT	p.L1159L	EVPL_uc010wss.1_Silent_p.L1181L|EVPL_uc010wst.1_Silent_p.L629L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1159	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCTCCTCCTCGAGGAGGCTCC	0.627		NaN											0	0	0	0.009096	0	4	63									
TNRC6C	57690	broad.mit.edu	37	17	76047219	76047219	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:76047219G>A	uc002jud.2	+	4	2676	c.2076G>A	c.(2074-2076)TGG>TGA	p.W692*	TNRC6C_uc002juf.2_Nonsense_Mutation_p.W692*|TNRC6C_uc002jue.2_Nonsense_Mutation_p.W692*	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	692	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GAACAGGGTGGATCGGGGGGC	0.542		NaN											0	0	0	0.00308	0	7	19									
TNRC6C	57690	broad.mit.edu	37	17	76089176	76089176	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:76089176C>T	uc002jud.2	+	16	4733	c.4133C>T	c.(4132-4134)TCA>TTA	p.S1378L	TNRC6C_uc002juf.2_Missense_Mutation_p.S1375L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1378	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GATAAAATCTCAAATGGCTCT	0.512		NaN											0	0	0	0.001984	0	5	49									
TMC6	11322	broad.mit.edu	37	17	76113906	76113906	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:76113906G>C	uc002juj.1	-	15	2124	c.1998C>G	c.(1996-1998)GTC>GTG	p.V666V	TMC6_uc002jui.1_Silent_p.V245V|TMC6_uc010dhf.1_Silent_p.V499V|TMC6_uc002juk.2_Silent_p.V666V|TMC6_uc010dhg.1_Intron|TMC6_uc002jul.1_Silent_p.V666V	NM_007267	NP_009198	Q7Z403	TMC6_HUMAN	transmembrane channel-like 6	666	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			AGCAGAGGAAGACAGCGGCGC	0.687		NaN							Epidermodysplasia_Verruciformis_Familial_Clustering_of				0	0	0	0.00308	0	5	27									
DNAH17	8632	broad.mit.edu	37	17	76540022	76540022	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:76540022C>T	uc002jvv.1	-	13	1661	c.1555G>A	c.(1555-1557)GAC>AAC	p.D519N						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CCATCCAAGTCTAACAGGGCC	0.502		NaN											0	0	0	0.00278	0	22	125									
CHMP6	79643	broad.mit.edu	37	17	78971126	78971126	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:78971126G>A	uc002jyw.3	+	6	558	c.480G>A	c.(478-480)CTG>CTA	p.L160L		NM_024591	NP_078867	Q96FZ7	CHMP6_HUMAN	chromatin modifying protein 6	160					cellular membrane organization|endosome transport|protein transport	cytosol|endomembrane system|late endosome membrane	protein N-terminus binding			ovary(1)	1	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0175)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			TGGAGGAGCTGAGCGCAATCA	0.632		NaN											0	0	0	0.001168	0	5	32									
ACTG1	71	broad.mit.edu	37	17	79479015	79479015	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:79479015C>A	uc002kaj.1	-	2	302	c.277G>T	c.(277-279)GAG>TAG	p.E93*	ACTG1_uc002kah.1_5'Flank|ACTG1_uc002kai.1_Nonsense_Mutation_p.E50*|ACTG1_uc002kak.1_Nonsense_Mutation_p.E93*|ACTG1_uc010wun.1_Nonsense_Mutation_p.E93*|ACTG1_uc002kal.1_Nonsense_Mutation_p.E93*|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	93					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			ACGCGCAGCTCGTTGTAGAAG	0.617		NaN											1	0	1.30897e-18	0.009535	1.41134e-18	25	113									
C17orf90	339229	broad.mit.edu	37	17	79632293	79632293	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:79632293C>G	uc002kba.2	-	2	393	c.382G>C	c.(382-384)GAT>CAT	p.D128H	C17orf90_uc002kbb.2_3'UTR|CCDC137_uc002kbc.3_5'Flank|CCDC137_uc002kbd.2_5'Flank	NM_001039842	NP_001034931	Q5BKU9	CQ090_HUMAN	hypothetical protein LOC339229	128											0	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AGGTTCTCATCAGCCACGTGC	0.667		NaN											0	0	0	0.004482	0	8	93									
P4HB	5034	broad.mit.edu	37	17	79817199	79817199	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:79817199C>T	uc002kbn.1	-	2	407	c.210G>A	c.(208-210)CTG>CTA	p.L70L	P4HB_uc002kbm.1_5'UTR	NM_000918	NP_000909	P07237	PDIA1_HUMAN	prolyl 4-hydroxylase, beta subunit precursor	70	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|lipid metabolic process|lipoprotein metabolic process|peptidyl-proline hydroxylation to 4-hydroxy-L-proline	cell surface|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|extracellular region|melanosome|plasma membrane	electron carrier activity|procollagen-proline 4-dioxygenase activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0509)			CTTCTGCCTTCAGCTTCCCAG	0.602		NaN											0	0	0	0.004656	0	23	160									
RAB40B	10966	broad.mit.edu	37	17	80616443	80616443	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr17:80616443G>A	uc002kft.2	-	5	615	c.489C>T	c.(487-489)ATC>ATT	p.I163I	RAB40B_uc002kfs.2_RNA	NM_006822	NP_006813	Q12829	RB40B_HUMAN	RAB40B, member RAS oncogene family	163					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			central_nervous_system(1)	1	Breast(20;0.00132)|all_neural(118;0.0952)	all_cancers(8;0.072)|all_epithelial(8;0.139)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			ACGACTCTGTGATGTTGAAAT	0.657		NaN											0	0	0	0.001984	0	7	183									
MYOM1	8736	broad.mit.edu	37	18	3131437	3131437	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:3131437G>C	uc002klp.2	-	17	2776	c.2442C>G	c.(2440-2442)GTC>GTG	p.V814V	MYOM1_uc002klq.2_Silent_p.V814V	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	814	Fibronectin type-III 3.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CAGCTGCATTGACTGCTCTGA	0.378		NaN											0	0	0	0.00308	0	6	25									
ARHGAP28	79822	broad.mit.edu	37	18	6896547	6896547	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:6896547C>G	uc010wzi.1	+	15	1659	c.1421C>G	c.(1420-1422)TCC>TGC	p.S474C	ARHGAP28_uc002knc.2_Missense_Mutation_p.S599C|ARHGAP28_uc002knd.2_Missense_Mutation_p.S492C|ARHGAP28_uc002kne.2_Missense_Mutation_p.S492C|ARHGAP28_uc002knf.2_Missense_Mutation_p.S483C			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	474					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CCACTTCTCTCCAAGGTGTCC	0.443		NaN											0	0	0	0.003163	0	13	67									
LAMA3	3909	broad.mit.edu	37	18	21355773	21355773	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:21355773G>A	uc002kuq.2	+	10	1377	c.1291G>A	c.(1291-1293)GAG>AAG	p.E431K	LAMA3_uc010dlv.1_Missense_Mutation_p.E431K|LAMA3_uc002kur.2_Missense_Mutation_p.E431K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	431	Laminin EGF-like 3.|Domain V.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGTGACCCTGAGCATGCGGA	0.483		NaN											0	0	0	0.006214	0	8	25									
SS18	6760	broad.mit.edu	37	18	23619259	23619259	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:23619259G>T	uc002kvm.2	-	6	847	c.769C>A	c.(769-771)CAA>AAA	p.Q257K	SS18_uc002kvn.2_Missense_Mutation_p.Q257K|SS18_uc010xbf.1_Missense_Mutation_p.Q175K|SS18_uc010xbg.1_Missense_Mutation_p.Q205K|SS18_uc010xbh.1_Missense_Mutation_p.Q205K|SS18_uc010xbi.1_Missense_Mutation_p.Q234K|SS18_uc010dlz.1_Missense_Mutation_p.Q205K	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	257	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					TTACCCTGTTGAGGAGGTCTA	0.393		NaN	T	SSX1| SSX2	synovial sarcoma								1	0	2.32078e-09	0.003163	2.45329e-09	13	69									
C18orf34	374864	broad.mit.edu	37	18	30926330	30926330	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:30926330G>T	uc002kxn.2	-	8	645	c.503C>A	c.(502-504)TCA>TAA	p.S168*	C18orf34_uc010xbr.1_Nonsense_Mutation_p.S168*|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Nonsense_Mutation_p.S168*|C18orf34_uc002kxp.2_Nonsense_Mutation_p.S168*	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	168	Potential.									ovary(1)	1						AATGGCCTCTGAGAGCAATGT	0.348		NaN											1	0	5.18039e-06	0.00308	5.3926e-06	5	36									
KIAA1632	57724	broad.mit.edu	37	18	43467730	43467730	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:43467730C>G	uc002lbm.2	-	29	5195	c.5095G>C	c.(5095-5097)GAG>CAG	p.E1699Q	KIAA1632_uc010xcq.1_Missense_Mutation_p.E253Q|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.E574Q	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1699					autophagy						0						CCCAAGATCTCAATACATGAA	0.433		NaN											0	0	0	0.007413	0	13	54									
TCEB3C	162699	broad.mit.edu	37	18	44555295	44555295	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:44555295C>A	uc010xdb.1	-	1	1155	c.919G>T	c.(919-921)GAG>TAG	p.E307*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	307					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GCAGCTTCCTCCTGGAGCGCT	0.637		NaN											1	0	3.52763e-06	0.00499	3.67509e-06	19	864									
LIPG	9388	broad.mit.edu	37	18	47101785	47101785	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:47101785G>C	uc002ldv.2	+	5	870	c.618G>C	c.(616-618)AAG>AAC	p.K206N	LIPG_uc002ldu.1_Missense_Mutation_p.K206N|LIPG_uc010xdh.1_Intron	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	206					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						ACATCCACAAGAGGCTCTCTC	0.567		NaN											0	0	0	0.010729	0	10	50									
MBD1	4152	broad.mit.edu	37	18	47799277	47799277	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:47799277C>G	uc010dow.1	-	14	2070	c.1633G>C	c.(1633-1635)GAG>CAG	p.E545Q	MBD1_uc002lef.2_Missense_Mutation_p.E250Q|MBD1_uc002leg.2_Missense_Mutation_p.E495Q|MBD1_uc010xdi.1_Missense_Mutation_p.E596Q|MBD1_uc002leh.3_Missense_Mutation_p.E489Q|MBD1_uc002len.2_Missense_Mutation_p.E499Q|MBD1_uc002lei.3_Missense_Mutation_p.E545Q|MBD1_uc002lej.3_Missense_Mutation_p.E443Q|MBD1_uc002lek.3_Missense_Mutation_p.E496Q|MBD1_uc002lel.3_Missense_Mutation_p.E476Q|MBD1_uc002lem.3_Missense_Mutation_p.E545Q|MBD1_uc010xdj.1_Missense_Mutation_p.E443Q|MBD1_uc010xdk.1_Missense_Mutation_p.E570Q|MBD1_uc010dox.1_Missense_Mutation_p.E476Q|MBD1_uc002leo.2_Missense_Mutation_p.E499Q	NM_015846	NP_056671	Q9UIS9	MBD1_HUMAN	methyl-CpG binding domain protein 1 isoform 1	545	TRD.				negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|nuclear speck	methyl-CpG binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TTGTCCTCCTCTGGGTCAGGT	0.582		NaN											0	0	0	0.010818	0	29	127									
NARS	4677	broad.mit.edu	37	18	55273932	55273932	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:55273932C>G	uc002lgs.2	-	10	1281	c.1053G>C	c.(1051-1053)CTG>CTC	p.L351L	NARS_uc002lgt.2_Silent_p.L350L|NARS_uc010xea.1_Silent_p.L102L	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	351					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	CCAACCGGTTCAGGAGGTCGT	0.493		NaN											0	0	0	0.004656	0	21	130									
ALPK2	115701	broad.mit.edu	37	18	56247584	56247584	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:56247584C>T	uc002lhj.3	-	4	638	c.424G>A	c.(424-426)GAG>AAG	p.E142K		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	142							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGTTCCTTCTCATCAATCTGA	0.493		NaN											0	0	0	0.008871	0	14	93									
CBLN2	147381	broad.mit.edu	37	18	70205477	70205477	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:70205477C>T	uc002lku.2	-	4	844	c.609G>A	c.(607-609)GAG>GAA	p.E203E	CBLN2_uc002lkv.2_Silent_p.E203E	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	203	C1q.					integral to membrane					0		Esophageal squamous(42;0.131)				GGTTGCCTCTCTCAAGTTTGA	0.527		NaN											0	0	0	0.00308	0	7	76									
ZNF407	55628	broad.mit.edu	37	18	72343136	72343136	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:72343136C>T	uc002llw.2	+	1	218	c.161C>T	c.(160-162)TCA>TTA	p.S54L	ZNF407_uc010xfc.1_Missense_Mutation_p.S54L|ZNF407_uc010dqu.1_Missense_Mutation_p.S54L|ZNF407_uc002llu.2_Missense_Mutation_p.S53L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	54					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		AGAGGTTTTTCAGAATCATCG	0.413		NaN											0	0	0	0.001984	0	7	24									
GALR1	2587	broad.mit.edu	37	18	74962762	74962762	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr18:74962762C>G	uc002lms.3	+	1	755	c.258C>G	c.(256-258)CTC>CTG	p.L86L		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	86	Helical; Name=2; (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		CCTACCTGCTCTTCTGCATCC	0.622		NaN											0	0	0	0.00361	0	55	200									
PALM	5064	broad.mit.edu	37	19	746781	746781	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:746781G>A	uc002lpm.1	+	9	1325	c.1131G>A	c.(1129-1131)AAG>AAA	p.K377K	PALM_uc002lpn.1_Silent_p.K333K|PALM_uc010xfu.1_Silent_p.K242K	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	377					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		TCGACATGAAGAAGCACCGTT	0.701		NaN											0	0	0	0.001168	0	4	25									
LPPR3	79948	broad.mit.edu	37	19	814710	814710	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:814710G>A	uc002lpx.1	-	6	703	c.639C>T	c.(637-639)TTC>TTT	p.F213F	LPPR3_uc010dru.1_Silent_p.F125F|LPPR3_uc002lpw.1_Silent_p.F213F|LPPR3_uc002lpy.1_5'UTR	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	213	Helical; (Potential).					integral to membrane	phosphatidate phosphatase activity				0						AGACCGCGGCGAAGGCTGACA	0.697		NaN											0	0	0	0.001855	0	11	90									
SBNO2	22904	broad.mit.edu	37	19	1123979	1123979	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:1123979G>A	uc002lrk.3	-	6	722	c.484C>T	c.(484-486)CTG>TTG	p.L162L	SBNO2_uc002lrj.3_Silent_p.L105L|SBNO2_uc010dse.2_Silent_p.L155L|SBNO2_uc010xgj.1_Silent_p.L105L|SBNO2_uc010dsf.2_Silent_p.L105L	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	162					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGAGGGCAGAAAGTCCTCG	0.657		NaN											0	0	0	0.004482	0	6	58									
APC2	10297	broad.mit.edu	37	19	1461973	1461973	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:1461973G>A	uc002lsr.1	+	14	1858	c.1650G>A	c.(1648-1650)CTG>CTA	p.L550L	APC2_uc002lss.1_Silent_p.L132L|APC2_uc002lst.1_Silent_p.L550L|APC2_uc002lsu.1_Silent_p.L549L|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	550	ARM 3.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTCCACCCTGAAGAGCGTGC	0.632		NaN											0	0	0	0.008291	0	7	60									
APC2	10297	broad.mit.edu	37	19	1462069	1462069	+	Silent	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:1462069G>T	uc002lsr.1	+	14	1954	c.1746G>T	c.(1744-1746)GTG>GTT	p.V582V	APC2_uc002lss.1_Silent_p.V164V|APC2_uc002lst.1_Silent_p.V582V|APC2_uc002lsu.1_Silent_p.V581V|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	582	ARM 4.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTTCCTGGTGAGCACCCTGA	0.637		NaN											1	0	2.39556e-15	0.00278	2.57008e-15	18	115									
ATP8B3	148229	broad.mit.edu	37	19	1811570	1811570	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:1811570C>T	uc002ltw.2	-	2	400	c.166G>A	c.(166-168)GAC>AAC	p.D56N	ATP8B3_uc002ltv.2_Missense_Mutation_p.D3N|ATP8B3_uc002ltx.2_Intron|ATP8B3_uc002ltz.1_Missense_Mutation_p.D3N	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	56	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGGGAGTCTCCCATCCCA	0.637		NaN											0	0	0	0.004482	0	3	57									
DOT1L	84444	broad.mit.edu	37	19	2222186	2222186	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:2222186C>G	uc002lvb.3	+	24	3054	c.3018C>G	c.(3016-3018)CTC>CTG	p.L1006L	DOT1L_uc002lvc.1_Silent_p.L300L|DOT1L_uc002lve.1_3'UTR	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1006						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCACCAGCTCTCCTCCAGTC	0.697		NaN											0	0	0	0.002299	0	19	125									
ZNF556	80032	broad.mit.edu	37	19	2876263	2876263	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:2876263G>A	uc002lwp.1	+	3	390	c.303G>A	c.(301-303)GAG>GAA	p.E101E	ZNF556_uc002lwq.2_Silent_p.E101E	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACACCAAGGAGAGACATTTGA	0.264		NaN											0	0	0	0.00245	0	14	79									
TLE2	7089	broad.mit.edu	37	19	3017853	3017853	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:3017853C>T	uc002lww.2	-	8	818	c.555G>A	c.(553-555)GAG>GAA	p.E185E	TLE2_uc010xhb.1_5'UTR|TLE2_uc010dth.2_Silent_p.E186E|TLE2_uc010xhc.1_Intron|TLE2_uc010dti.2_Silent_p.E199E|TLE2_uc010xhd.1_Intron	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	185	Gly/Pro-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGGGGCTCTCTCCACTGACA	0.522		NaN											0	0	0	0.001984	0	6	48									
TLE2	7089	broad.mit.edu	37	19	3019709	3019709	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:3019709G>C	uc002lww.2	-	6	620	c.357C>G	c.(355-357)AAC>AAG	p.N119K	TLE2_uc010xhb.1_5'UTR|TLE2_uc010dth.2_Missense_Mutation_p.N119K|TLE2_uc010xhc.1_Missense_Mutation_p.N64K|TLE2_uc010dti.2_Missense_Mutation_p.N132K|TLE2_uc010xhd.1_Intron	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	119	Gln-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGATGAGGCTGTTCAGCTCCC	0.647		NaN											0	0	0	0.006214	0	9	43									
CREB3L3	84699	broad.mit.edu	37	19	4154998	4154998	+	Missense_Mutation	SNP	G	G	A	rs143652660		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:4154998G>A	uc002lzl.2	+	2	246	c.130G>A	c.(130-132)GAG>AAG	p.E44K	CREB3L3_uc002lzm.2_Missense_Mutation_p.E35K|CREB3L3_uc010xib.1_Missense_Mutation_p.E35K|CREB3L3_uc010xic.1_Missense_Mutation_p.E35K	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	44	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAGCTGGGCGAGGGCTGGGG	0.642		NaN											0	0	0	0.004289	0	28	181									
MPND	84954	broad.mit.edu	37	19	4345945	4345945	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:4345945C>G	uc002mae.2	+	3	565	c.498C>G	c.(496-498)CAC>CAG	p.H166Q	MPND_uc010dtx.2_RNA|MPND_uc002mag.2_Missense_Mutation_p.H166Q|MPND_uc002maf.2_Missense_Mutation_p.H166Q|MPND_uc002mah.2_Missense_Mutation_p.H54Q|MPND_uc002mai.2_Missense_Mutation_p.H54Q	NM_032868	NP_116257	Q8N594	MPND_HUMAN	MPN domain containing isoform 1	166							peptidase activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCGGCTGCACCAGCTGCACA	0.632		NaN											0	0	0	0.004672	0	3	34									
UBXN6	80700	broad.mit.edu	37	19	4446589	4446589	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:4446589G>C	uc002man.1	-	8	924	c.828C>G	c.(826-828)GTC>GTG	p.V276V	UBXN6_uc010dty.1_Silent_p.V180V|UBXN6_uc002mam.1_Silent_p.V223V	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	276						microtubule organizing center|nucleus	protein binding				0						AGGGCTGGAAGACGCGGCGCT	0.672		NaN											0	0	0	0.00245	0	11	111									
LRG1	116844	broad.mit.edu	37	19	4538477	4538477	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:4538477C>T	uc002mau.2	-	2	530	c.519G>A	c.(517-519)GGG>GGA	p.G173G	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	173	LRR 4.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAGGCGGTTCCCAGACAGGT	0.622		NaN											0	0	0	0.010771	0	34	218									
INSR	3643	broad.mit.edu	37	19	7166277	7166277	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:7166277G>C	uc002mgd.1	-	8	1858	c.1749C>G	c.(1747-1749)CTC>CTG	p.L583L	INSR_uc002mge.1_Silent_p.L583L|INSR_uc002mgf.2_Silent_p.L583L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	583					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCCAGGGCTTGAGACCCCGCA	0.557		NaN											0	0	0	0.004482	0	8	70									
ARHGEF18	23370	broad.mit.edu	37	19	7523533	7523533	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:7523533G>A	uc002mgi.2	+	9	2006	c.1753G>A	c.(1753-1755)GAC>AAC	p.D585N	ARHGEF18_uc010xjm.1_Missense_Mutation_p.D427N|ARHGEF18_uc002mgh.2_Missense_Mutation_p.D427N|ARHGEF18_uc002mgj.1_Missense_Mutation_p.D228N	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	585	PH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				CTCCAAAGAGGACAGGAACGC	0.582		NaN											0	0	0	0.006214	0	8	46									
LRRC8E	80131	broad.mit.edu	37	19	7960596	7960596	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:7960596C>G	uc002mir.2	+	2	209	c.108C>G	c.(106-108)CTC>CTG	p.L36L		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	36	Helical; (Potential).					integral to membrane				lung(1)|pancreas(1)	2						TGGCCATGCTCATGATTGGGG	0.642		NaN											0	0	0	0.004007	0	14	117									
FBN3	84467	broad.mit.edu	37	19	8175799	8175799	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:8175799G>A	uc002mjf.2	-	33	4284	c.4263C>T	c.(4261-4263)AAC>AAT	p.N1421N		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1421	EGF-like 22; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TTCCAGGCAGGTTCTCACAGC	0.622		NaN											0	0	0	0.00874	0	38	205									
ANGPTL4	51129	broad.mit.edu	37	19	8438619	8438619	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:8438619C>G	uc002mjq.1	+	7	1265	c.1070C>G	c.(1069-1071)TCC>TGC	p.S357C	ANGPTL4_uc002mjr.1_Missense_Mutation_p.S319C|ANGPTL4_uc010xkc.1_Missense_Mutation_p.S190C	NM_139314	NP_647475	Q9BY76	ANGL4_HUMAN	angiopoietin-like 4 protein isoform a precursor	357	Fibrinogen C-terminal.				angiogenesis|cell differentiation|cellular lipid metabolic process|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|positive regulation of angiogenesis|response to hypoxia|signal transduction|triglyceride homeostasis	extracellular space|proteinaceous extracellular matrix	enzyme inhibitor activity|receptor binding			ovary(1)	1						TGCAGCCATTCCAACCTCAAC	0.607		NaN											0	0	0	0.00361	0	66	501									
ADAMTS10	81794	broad.mit.edu	37	19	8661945	8661945	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:8661945C>T	uc002mkj.1	-	8	1240	c.966G>A	c.(964-966)GTG>GTA	p.V322V	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	322	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CGCTGTGGTTCACGATGGATT	0.572		NaN											0	0	0	0.00499	0	15	155									
MUC16	94025	broad.mit.edu	37	19	9002669	9002669	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:9002669C>T	uc002mkp.2	-	51	40351	c.40147G>A	c.(40147-40149)GAG>AAG	p.E13383K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E200K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13385	Extracellular (Potential).|SEA 9.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCATCCTTCTCAGGCCTAGGG	0.547		NaN											0	0	0	0.001168	0	5	37									
MUC16	94025	broad.mit.edu	37	19	9062124	9062124	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:9062124G>T	uc002mkp.2	-	3	25526	c.25322C>A	c.(25321-25323)CCC>CAC	p.P8441H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8443	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCACCACTGGGCACTTCAGA	0.522		NaN											1	0	3.27435e-08	0.00245	3.44725e-08	14	71									
MUC16	94025	broad.mit.edu	37	19	9091500	9091500	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:9091500C>T	uc002mkp.2	-	1	519	c.315G>A	c.(313-315)CTG>CTA	p.L105L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	105	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGGGGACTCAGCGATGGGC	0.537		NaN											0	0	0	0.002299	0	22	130									
ZNF846	162993	broad.mit.edu	37	19	9873968	9873968	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:9873968G>A	uc002mmb.1	-	3	663	c.132C>T	c.(130-132)CTC>CTT	p.L44L	ZNF846_uc010xky.1_RNA|ZNF846_uc010xkz.1_RNA|ZNF846_uc010dww.2_Intron|ZNF846_uc002mmc.1_5'UTR	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	44	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTAGTATAATGAGATTCTTGT	0.408		NaN											0	0	0	0.010729	0	8	61									
OLFM2	93145	broad.mit.edu	37	19	9967498	9967498	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:9967498G>A	uc002mmp.2	-	5	700	c.672C>T	c.(670-672)CCC>CCT	p.P224P	OLFM2_uc002mmo.2_Silent_p.P146P	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	224	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						TATCCGCACTGGGGGCCATCG	0.662		NaN											0	0	0	0.00245	0	10	53									
PDE4A	5141	broad.mit.edu	37	19	10577958	10577959	+	Missense_Mutation	DNP	GG	GG	TA			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:10577958_10577959GG>TA	uc002moj.2	+	15	2430_2431	c.2322_2323GG>TA	c.(2320-2325)CTGGAG>CTTAAG	p.E775K	PDE4A_uc002mok.2_Missense_Mutation_p.E749K|PDE4A_uc002mol.2_Missense_Mutation_p.E714K|PDE4A_uc002mom.2_Missense_Mutation_p.E536K|PDE4A_uc002mon.2_Missense_Mutation_p.E230K|PDE4A_uc002moo.2_3'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	775					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	AGGCCGAGCTGGAGGCAGTGTA	0.594		NaN											0	0	0	0.004672	0	19	165									
KANK2	25959	broad.mit.edu	37	19	11286644	11286644	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:11286644G>A	uc010dxv.2	-	10	2340	c.1782C>T	c.(1780-1782)CTC>CTT	p.L594L	KANK2_uc002mqm.2_Silent_p.L602L|KANK2_uc002mqo.3_Silent_p.L594L|KANK2_uc002mqp.1_Silent_p.L403L	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	594											0						AGGCTGAGATGAGGTCAGGGC	0.607		NaN											0	0	0	0.006122	0	14	152									
RAB3D	9545	broad.mit.edu	37	19	11448060	11448060	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:11448060C>T	uc002mqy.2	-	2	254	c.16G>A	c.(16-18)GAC>AAC	p.D6N		NM_004283	NP_004274	O95716	RAB3D_HUMAN	RAB3D, member RAS oncogene family	6					exocytosis|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(2)	2						GCCTGGGTGTCTCCAGCTGAT	0.498		NaN											0	0	0	0.00278	0	22	170									
ZNF564	163050	broad.mit.edu	37	19	12639430	12639430	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:12639430G>C	uc002mty.2	-	2	294	c.84C>G	c.(82-84)CTC>CTG	p.L28L	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATCTCTGTAGAGTTTCTTCT	0.453		NaN											0	0	0	0.010729	0	10	79									
ZNF791	163049	broad.mit.edu	37	19	12739580	12739580	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:12739580G>T	uc002mua.2	+	4	1399	c.1237G>T	c.(1237-1239)GAG>TAG	p.E413*	ZNF791_uc010xml.1_Nonsense_Mutation_p.E381*|ZNF791_uc010dyu.1_Nonsense_Mutation_p.E304*|ZNF791_uc010xmm.1_Nonsense_Mutation_p.E304*	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	413	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AAAACCCTATGAGTGTAAGGA	0.393		NaN											1	0	0.00448238	0.004482	0.00457775	7	75									
ZNF791	163049	broad.mit.edu	37	19	12740000	12740000	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:12740000G>A	uc002mua.2	+	4	1819	c.1657G>A	c.(1657-1659)GAA>AAA	p.E553K	ZNF791_uc010xml.1_Missense_Mutation_p.E521K|ZNF791_uc010dyu.1_Missense_Mutation_p.E444K|ZNF791_uc010xmm.1_Missense_Mutation_p.E444K	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	553	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GAAACCTCTTGAATGTAAGCA	0.353		NaN											0	0	0	0.004007	0	13	46									
MAST1	22983	broad.mit.edu	37	19	12969528	12969528	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:12969528C>T	uc002mvm.2	+	12	1469	c.1341C>T	c.(1339-1341)CTC>CTT	p.L447L	MAST1_uc002mvk.2_Silent_p.L443L	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	447	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GGCGCCACCTCTGCATGGTCA	0.622		NaN											0	0	0	0.00499	0	12	69									
GCDH	2639	broad.mit.edu	37	19	13007041	13007041	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:13007041G>A	uc002mvq.2	+	8	735	c.658G>A	c.(658-660)GAT>AAT	p.D220N	GCDH_uc010xms.1_Missense_Mutation_p.D187N|GCDH_uc002mvp.2_Missense_Mutation_p.D220N|GCDH_uc010xmt.1_Intron|GCDH_uc010xmu.1_Missense_Mutation_p.D176N	NM_000159	NP_000150	Q92947	GCDH_HUMAN	glutaryl-Coenzyme A dehydrogenase isoform a	220					lysine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|glutaryl-CoA dehydrogenase activity|protein binding				0						GCCTATGGCCGATCTGTTTGT	0.622		NaN											0	0	0	0.011902	0	38	182									
CALR	811	broad.mit.edu	37	19	13054368	13054368	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:13054368C>T	uc002mvu.2	+	8	1058	c.978C>T	c.(976-978)ATC>ATT	p.I326I	CALR_uc002mvv.2_5'Flank|RAD23A_uc002mvw.1_5'Flank|RAD23A_uc002mvx.1_5'Flank|RAD23A_uc002mvz.1_5'Flank|RAD23A_uc002mwa.1_5'Flank|RAD23A_uc002mvy.1_5'Flank|RAD23A_uc010xmw.1_5'Flank	NM_004343	NP_004334	P27797	CALR_HUMAN	calreticulin precursor	326	C-domain.				cell cycle arrest|cellular senescence|glucocorticoid receptor signaling pathway|negative regulation of neuron differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of steroid hormone receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of translation|peptide antigen assembly with MHC class I protein complex|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of phagocytosis|post-translational protein modification|protein export from nucleus|protein maturation by protein folding|protein N-linked glycosylation via asparagine|protein stabilization|regulation of apoptosis|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|extracellular space|MHC class I peptide loading complex|nucleus|perinuclear region of cytoplasm|polysome|proteinaceous extracellular matrix	androgen receptor binding|calcium ion binding|chaperone binding|complement component C1q binding|DNA binding|integrin binding|mRNA binding|protein binding involved in protein folding|sugar binding|ubiquitin protein ligase binding|unfolded protein binding|zinc ion binding			ovary(1)	1					Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGGCACCATCTTTGACAACT	0.527		NaN											0	0	0	0.00499	0	15	106									
RAD23A	5886	broad.mit.edu	37	19	13059132	13059132	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:13059132G>C	uc002mvw.1	+	3	485	c.376G>C	c.(376-378)GAG>CAG	p.E126Q	RAD23A_uc002mvx.1_Missense_Mutation_p.E126Q|RAD23A_uc002mvz.1_Missense_Mutation_p.E126Q|RAD23A_uc002mwa.1_Missense_Mutation_p.E126Q|RAD23A_uc002mvy.1_5'UTR|RAD23A_uc010xmw.1_5'UTR	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	126					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						GAGCCCATCAGAGGAATCCGC	0.652		NaN						NER					0	0	0	0.008291	0	6	106									
OR10H3	26532	broad.mit.edu	37	19	15853149	15853149	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:15853149C>G	uc010xoq.1	+	1	947	c.947C>G	c.(946-948)TCC>TGC	p.S316C		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTCTAAGCTCCTAATGGCCA	0.299		NaN											0	0	0	0.009096	0	4	32									
FCHO1	23149	broad.mit.edu	37	19	17883460	17883460	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:17883460G>A	uc010ebb.2	+	10	889	c.700G>A	c.(700-702)GAG>AAG	p.E234K	FCHO1_uc002nhg.3_Missense_Mutation_p.E234K|FCHO1_uc002nhh.2_Missense_Mutation_p.E234K|FCHO1_uc010xpw.1_Missense_Mutation_p.E184K|FCHO1_uc010ebc.1_Missense_Mutation_p.E241K	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	234										breast(1)	1						ACAGGTGCATGAGGAATTTAA	0.587		NaN											0	0	0	0.012319	0	18	115									
JUND	3727	broad.mit.edu	37	19	18391519	18391519	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:18391519G>C	uc002nip.2	-	1	914	c.776C>G	c.(775-777)TCG>TGG	p.S259W	hsa-mir-3188|MI0014232_5'Flank	NM_005354	NP_005345	P17535	JUND_HUMAN	jun D proto-oncogene	259					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						GTCGATGGGCGACAACGGCGG	0.721		NaN											0	0	0	0.003163	0	6	38									
LRRC25	126364	broad.mit.edu	37	19	18507660	18507660	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:18507660G>A	uc002niw.2	-	1	756	c.114C>T	c.(112-114)TTC>TTT	p.F38F	LRRC25_uc002nix.2_Silent_p.F38F	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	38	Extracellular (Potential).					integral to membrane					0						ACGTGGCACTGAACTCCGCGT	0.617		NaN											0	0	0	0.003163	0	15	79									
ELL	8178	broad.mit.edu	37	19	18632761	18632761	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:18632761C>T	uc002njh.2	-	1	177	c.105G>A	c.(103-105)CTG>CTA	p.L35L	ELL_uc010ebq.2_5'UTR	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	35					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		CGAAGGCCCTCAGGGCACTGT	0.701		NaN	T	MLL	AL								0	0	0	0.00308	0	6	24									
UBA52	7311	broad.mit.edu	37	19	18684188	18684188	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:18684188C>G	uc002njr.2	+	2	192	c.78C>G	c.(76-78)GTC>GTG	p.V26V	UBA52_uc002njs.2_Silent_p.V26V|UBA52_uc002njt.2_Silent_p.V26V	NM_001033930	NP_001029102	P62987	RL40_HUMAN	ubiquitin and ribosomal protein L40 precursor	26	Ubiquitin-like.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane|ribosome	protein binding|structural constituent of ribosome				0						TTGAGAATGTCAAAGCCAAAA	0.552		NaN											0	0	0	0.008291	0	8	47									
DDX49	54555	broad.mit.edu	37	19	19033503	19033503	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:19033503C>T	uc002nkq.1	+	6	783	c.726C>T	c.(724-726)TTC>TTT	p.F242F	HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkr.1_RNA|DDX49_uc002nks.1_Silent_p.F135F|DDX49_uc002nkt.1_Silent_p.F124F	NM_019070	NP_061943	Q9Y6V7	DDX49_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	242	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			Epithelial(12;0.0289)			TCCAGCGCTTCCAGGATGAGC	0.627		NaN											0	0	0	0.002299	0	19	143									
ZNF208	7757	broad.mit.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	A	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:22155896A>C	uc002nqp.2	-	5	1789	c.1640T>G	c.(1639-1641)ATT>AGT	p.I547S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAGACCTTAATAAAGGTTTT	0.398		NaN											0	0	0	0.000602	0	3	56									
C19orf2	8725	broad.mit.edu	37	19	30505917	30505917	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:30505917G>A	uc002nsr.2	+	11	1579	c.1549G>A	c.(1549-1551)GAA>AAA	p.E517K	C19orf2_uc002nsq.2_Intron|C19orf2_uc002nss.2_Missense_Mutation_p.E477K|C19orf2_uc002nst.2_Missense_Mutation_p.E441K	NM_003796	NP_003787	O94763	RMP_HUMAN	RPB5-mediating protein isoform a	517					protein folding|regulation of transcription from RNA polymerase II promoter|response to virus	DNA-directed RNA polymerase II, core complex|prefoldin complex	transcription corepressor activity|unfolded protein binding			ovary(1)|kidney(1)	2	Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)	Hepatocellular(1079;0.137)|Renal(1328;0.228)	STAD - Stomach adenocarcinoma(5;5.36e-06)|Lung(7;0.0144)|LUAD - Lung adenocarcinoma(5;0.115)	STAD - Stomach adenocarcinoma(1328;0.18)		GGAAGCATCTGAAGAAACTGG	0.433		NaN											0	0	0	0.010729	0	9	60									
ANKRD27	84079	broad.mit.edu	37	19	33135288	33135288	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:33135288G>A	uc002ntn.1	-	5	624	c.468C>T	c.(466-468)ATC>ATT	p.I156I	ANKRD27_uc002nto.1_Silent_p.I156I	NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	156					early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					GGAAAGAGGCGATGTTCCTGT	0.532		NaN											0	0	0	0.00361	0	74	281									
ZNF792	126375	broad.mit.edu	37	19	35449696	35449696	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:35449696G>A	uc002nxh.1	-	4	1450	c.1063C>T	c.(1063-1065)CAG>TAG	p.Q355*		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	355	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CTCTTATGCTGAATGAGGTTG	0.507		NaN											0	0	0	0.001855	0	12	48									
LGI4	163175	broad.mit.edu	37	19	35625566	35625566	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:35625566G>T	uc002nxx.2	-	1	613	c.19C>A	c.(19-21)CTG>ATG	p.L7M	LGI4_uc002nxy.1_Intron|LGI4_uc002nxz.1_5'Flank|LGI4_uc002nya.2_Missense_Mutation_p.L7M	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	7						extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			AGCAGCAGCAGAATGCCTGCC	0.687		NaN											1	0	0.00198382	0.001984	0.00202762	6	37									
MLL4	9757	broad.mit.edu	37	19	36219890	36219890	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:36219890C>T	uc010eei.2	+	22	4692	c.4692C>T	c.(4690-4692)TTC>TTT	p.F1564F		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1564					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTTCAGCATTCCAGGGCAAGG	0.602		NaN											0	0	0	0.007413	0	16	151									
THAP8	199745	broad.mit.edu	37	19	36545042	36545042	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:36545042G>C	uc002oda.1	-	1	623	c.78C>G	c.(76-78)TTC>TTG	p.F26L	WDR62_uc002odd.2_5'Flank|WDR62_uc002odc.2_5'Flank|THAP8_uc010xtb.1_Intron|THAP8_uc010xtc.1_RNA|WDR62_uc010eer.2_5'Flank|WDR62_uc002odb.2_5'Flank	NM_152658	NP_689871	Q8NA92	THAP8_HUMAN	THAP domain containing 8	26	THAP-type.						DNA binding|metal ion binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CTCACTTGTAGAAGCTCACAG	0.672		NaN											0	0	0	0.006214	0	8	58									
ZNF260	339324	broad.mit.edu	37	19	37005801	37005801	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:37005801C>T	uc002oee.1	-	4	1184	c.340G>A	c.(340-342)GAA>AAA	p.E114K	ZNF260_uc002oed.1_Missense_Mutation_p.E111K|ZNF260_uc010eey.1_Missense_Mutation_p.E111K|ZNF260_uc002oef.1_Missense_Mutation_p.E111K	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	114					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					GAAACTTTTTCACATTCATAA	0.388		NaN											0	0	0	0.001855	0	13	60									
ZNF529	57711	broad.mit.edu	37	19	37038544	37038544	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:37038544C>T	uc002oeh.3	-	5	1118	c.916G>A	c.(916-918)GAT>AAT	p.D306N	ZNF529_uc010xth.1_Missense_Mutation_p.D306N|ZNF529_uc010xti.1_Missense_Mutation_p.D288N|ZNF529_uc002oeg.3_Missense_Mutation_p.D201N	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	273					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					GTTTTCTCATCAGTATGGATT	0.388		NaN											0	0	0	0.001855	0	13	57									
ZNF607	84775	broad.mit.edu	37	19	38190626	38190626	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:38190626G>A	uc002ohc.1	-	5	1002	c.406C>T	c.(406-408)CAT>TAT	p.H136Y	ZNF607_uc002ohb.1_Missense_Mutation_p.H135Y	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	136	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			TCACTAGTATGAATTGTTTGA	0.373		NaN											0	0	0	0.00245	0	11	83									
SIPA1L3	23094	broad.mit.edu	37	19	38692599	38692599	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:38692599G>T	uc002ohk.2	+	20	5591	c.5082G>T	c.(5080-5082)GAG>GAT	p.E1694D		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1694					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TGAGCCTGGAGAGGGGACCCC	0.647		NaN											1	0	1.33834e-09	0.007413	1.41591e-09	14	136									
CATSPERG	57828	broad.mit.edu	37	19	38860798	38860798	+	Splice_Site	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:38860798G>A	uc002oih.3	+	28	3201	c.3114_splice	c.e28-1	p.R1038_splice	CATSPERG_uc002oig.3_Splice_Site_p.R998_splice|CATSPERG_uc002oif.3_Splice_Site_p.R678_splice|CATSPERG_uc010efw.2_Splice_Site	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma						cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						AACCCCTGCAGAGGAGTGGAC	0.607		NaN											0	0	0	0.00333	0	21	79									
EIF3K	27335	broad.mit.edu	37	19	39114742	39114742	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:39114742C>T	uc002oiz.1	+	3	371	c.184C>T	c.(184-186)CAG>TAG	p.Q62*	EIF3K_uc010xuh.1_Nonsense_Mutation_p.Q62*|EIF3K_uc010xui.1_5'UTR	NM_013234	NP_037366	Q9UBQ5	EIF3K_HUMAN	eukaryotic translation initiation factor 3,	62					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex|nucleus	protein binding|ribosome binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			AGCCTTCTTTCAGACCACGGT	0.562		NaN											0	0	0	0.001855	0	10	115									
LGALS4	3960	broad.mit.edu	37	19	39292471	39292471	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:39292471G>A	uc002ojg.2	-	10	1119	c.905C>T	c.(904-906)TCG>TTG	p.S302L		NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	302	Galectin 2.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CTGGAAGGCCGAGAGGCGATG	0.532		NaN											0	0	0	0.001855	0	11	85									
PAF1	54623	broad.mit.edu	37	19	39879228	39879228	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:39879228C>T	uc002old.2	-	10	1004	c.829G>A	c.(829-831)GAG>AAG	p.E277K	PAF1_uc002ole.1_Missense_Mutation_p.E267K|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	277					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			TCCATCTCCTCCTCCTGGTCC	0.522		NaN											0	0	0	0.008361	0	29	94									
PAF1	54623	broad.mit.edu	37	19	39879261	39879261	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:39879261C>T	uc002old.2	-	10	971	c.796G>A	c.(796-798)GAG>AAG	p.E266K	PAF1_uc002ole.1_Missense_Mutation_p.E256K|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	266					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			TTCAACGTCTCTTCTACAGGC	0.512		NaN											0	0	0	0.00499	0	16	68									
DMRTC2	63946	broad.mit.edu	37	19	42354706	42354706	+	Missense_Mutation	SNP	T	T	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:42354706T>C	uc002ors.2	+	8	1012	c.929T>C	c.(928-930)GTG>GCG	p.V310A	DMRTC2_uc002orr.1_Missense_Mutation_p.V238A|DMRTC2_uc010xwe.1_Missense_Mutation_p.V361A	NM_001040283	NP_001035373	Q8IXT2	DMRTD_HUMAN	DMRT-like family C2	310	Pro-rich.				cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						GCTCCTCGTGTGACCCCTTCT	0.632		NaN											0	0	0	0.003954	0	21	74									
GRIK5	2901	broad.mit.edu	37	19	42509942	42509942	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:42509942G>A	uc002osj.1	-	16	2231	c.2196C>T	c.(2194-2196)CTC>CTT	p.L732L	GRIK5_uc002osi.1_Silent_p.L304L	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	732	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GGTTGCAGTTGAGGCGCCGGT	0.622		NaN											0	0	0	0.001984	0	6	50									
ZNF526	116115	broad.mit.edu	37	19	42728868	42728868	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:42728868G>A	uc002osz.1	+	3	469	c.313G>A	c.(313-315)GAG>AAG	p.E105K		NM_133444	NP_597701	Q8TF50	ZN526_HUMAN	zinc finger protein 526	105					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0704)				GCCGGGTGCTGAGGGGCCCTT	0.622		NaN											0	0	0	0.001368	0	10	137									
CIC	23152	broad.mit.edu	37	19	42798383	42798383	+	Silent	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:42798383C>A	uc002otf.1	+	18	4294	c.4254C>A	c.(4252-4254)TCC>TCA	p.S1418S		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1418					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GAAGACGCTCCAGCTGCAGCT	0.617		NaN	T	DUX4	soft tissue sarcoma								1	0	2.24893e-16	0.009718	2.41676e-16	39	127									
CD177	57126	broad.mit.edu	37	19	43864482	43864482	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:43864482G>A	uc002owi.2	+	6	727	c.685G>A	c.(685-687)GAT>AAT	p.D229N	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	229					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				AGAACCCACTGATTGGACCAC	0.542		NaN											0	0	0	0.001168	0	5	29									
PLAUR	5329	broad.mit.edu	37	19	44160637	44160637	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:44160637C>T	uc002oxf.1	-	4	696	c.466G>A	c.(466-468)GAA>AAA	p.E156K	PLAUR_uc002oxd.1_Missense_Mutation_p.E156K|PLAUR_uc002oxe.1_Missense_Mutation_p.E151K|PLAUR_uc002oxg.1_Missense_Mutation_p.E156K	NM_002659	NP_002650	Q03405	UPAR_HUMAN	plasminogen activator, urokinase receptor	156	UPAR/Ly6 2.				attachment of GPI anchor to protein|blood coagulation|C-terminal protein lipidation|cellular component movement|chemotaxis|fibrinolysis|regulation of proteolysis	anchored to membrane|cell surface|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|extrinsic to membrane|integral to membrane|plasma membrane	enzyme binding|U-plasminogen activator receptor activity			ovary(1)	1		Prostate(69;0.0153)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Streptokinase(DB00086)|Tenecteplase(DB00031)|Urokinase(DB00013)	TCACCTTCTTCACCTTCCTGG	0.478		NaN											0	0	0	0.00874	0	37	295									
ZNF221	7638	broad.mit.edu	37	19	44470216	44470216	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:44470216C>T	uc002oxx.2	+	6	890	c.562C>T	c.(562-564)CAT>TAT	p.H188Y	ZNF221_uc010ejb.1_Missense_Mutation_p.H188Y|ZNF221_uc010xws.1_Missense_Mutation_p.H188Y	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	188	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				CTTTGATCTTCATCAACAATC	0.408		NaN											0	0	0	0.009535	0	25	88									
ZFP112	7771	broad.mit.edu	37	19	44832181	44832181	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:44832181G>A	uc010ejj.2	-	5	2260	c.2147C>T	c.(2146-2148)TCT>TTT	p.S716F	ZFP112_uc002ozc.3_Missense_Mutation_p.S710F|ZFP112_uc010xwy.1_Missense_Mutation_p.S733F|ZFP112_uc010xwz.1_Missense_Mutation_p.S715F	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	716					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						TCTTTCTCCAGAATGGACACT	0.453		NaN											0	0	0	0.006214	0	7	44									
CBLC	23624	broad.mit.edu	37	19	45287647	45287647	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:45287647G>A	uc002ozs.2	+	5	969	c.906G>A	c.(904-906)CAG>CAA	p.Q302Q	CBLC_uc010ejt.2_Intron	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	302	SH2-like.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				TGGAGGGACAGAAGGACGGCT	0.483		NaN	M		AML						OREG0025542	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00333	0	21	98									
CLPTM1	1209	broad.mit.edu	37	19	45490661	45490661	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:45490661G>A	uc002pai.2	+	8	1033	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	CLPTM1_uc010ejv.1_Missense_Mutation_p.E238K|CLPTM1_uc010xxf.1_Missense_Mutation_p.E238K|CLPTM1_uc010xxg.1_Missense_Mutation_p.E326K	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	340	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		GCAGTCAGATGAGGAGCAGGA	0.632		NaN											0	0	0	0.004007	0	10	84									
GPR4	2828	broad.mit.edu	37	19	46094942	46094942	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:46094942G>C	uc002pcm.2	-	2	1128	c.183C>G	c.(181-183)ATC>ATG	p.I61M	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	61	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		GCAGGTCGGCGATGCTGAGGT	0.647		NaN											0	0	0	0.003163	0	13	176									
GPR4	2828	broad.mit.edu	37	19	46094948	46094948	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:46094948G>A	uc002pcm.2	-	2	1122	c.177C>T	c.(175-177)CTC>CTT	p.L59L	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	59	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		CGGCGATGCTGAGGTTCATCA	0.642		NaN											0	0	0	0.001368	0	9	175									
GIPR	2696	broad.mit.edu	37	19	46174547	46174547	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:46174547C>T	uc002pcu.1	+	4	276	c.177C>T	c.(175-177)CTC>CTT	p.L59L	GIPR_uc002pct.1_Silent_p.L59L|GIPR_uc010xxp.1_Intron|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	59	Extracellular (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		CCCCAGGCCTCGCCTGTAACG	0.667		NaN											0	0	0	0.004656	0	24	185									
EHD2	30846	broad.mit.edu	37	19	48244378	48244378	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:48244378G>A	uc002phj.3	+	6	1571	c.1321G>A	c.(1321-1323)GAG>AAG	p.E441K	EHD2_uc010xyu.1_Missense_Mutation_p.E305K|EHD2_uc010xyv.1_Missense_Mutation_p.E124K	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	441					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		CTCGGACGACGAGGCCGAGTG	0.657		NaN											0	0	0	0.004007	0	12	89									
PPFIA3	8541	broad.mit.edu	37	19	49652018	49652018	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:49652018G>A	uc002pmr.2	+	25	3439	c.3107G>A	c.(3106-3108)CGA>CAA	p.R1036Q	PPFIA3_uc010yai.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.R895Q|PPFIA3_uc002pmt.2_Missense_Mutation_p.R175Q|PPFIA3_uc002pmu.1_Missense_Mutation_p.R85Q	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	1036	Potential.					cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		ACCCAGATCCGAGGTGAGTAG	0.587		NaN											0	0	0	0.001168	0	5	45									
CD37	951	broad.mit.edu	37	19	49840236	49840236	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:49840236C>T	uc002pnd.2	+	3	334	c.213C>T	c.(211-213)ATC>ATT	p.I71I	uc002pnb.1_Intron|CD37_uc002pnc.2_RNA|CD37_uc010yam.1_Silent_p.I71I|CD37_uc010yan.1_Silent_p.I3I|CD37_uc002pnf.3_Silent_p.I43I|CD37_uc002pne.2_Silent_p.I3I	NM_001774	NP_001765	P11049	CD37_HUMAN	CD37 antigen isoform A	71	Helical; (Potential).					integral to membrane					0		all_lung(116;2.81e-06)|Lung NSC(112;5.89e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00088)|GBM - Glioblastoma multiforme(486;0.0443)		CCATGGGCATCGCCCTCCTGG	0.617		NaN											0	0	0	0.00499	0	16	63									
NUP62	23636	broad.mit.edu	37	19	50413062	50413062	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:50413062C>T	uc002pqx.2	-	2	107	c.3G>A	c.(1-3)ATG>ATA	p.M1I	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Missense_Mutation_p.M1I|NUP62_uc002pqz.2_Missense_Mutation_p.M1I|NUP62_uc002pra.2_Missense_Mutation_p.M1I|NUP62_uc002prb.2_Missense_Mutation_p.M1I|NUP62_uc002prc.2_Missense_Mutation_p.M1I	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	1	15 X 9 AA approximate repeats.|1.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		TAAACCCGCTCATGGCTCCGG	0.547		NaN											0	0	0	0.001368	0	7	58									
ETFB	2109	broad.mit.edu	37	19	51848565	51848565	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:51848565G>A	uc002pwh.2	-	6	760	c.668C>T	c.(667-669)TCT>TTT	p.S223F	ETFB_uc002pwg.2_Missense_Mutation_p.S314F	NM_001985	NP_001976	P38117	ETFB_HUMAN	electron-transfer-flavoprotein, beta polypeptide	223					respiratory electron transport chain|transport	mitochondrial matrix	electron carrier activity				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000226)|OV - Ovarian serous cystadenocarcinoma(262;0.00661)		ACTGATCACAGAGAGCTTGGA	0.592		NaN											0	0	0	0.010729	0	11	88									
ZNF808	388558	broad.mit.edu	37	19	53056414	53056414	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:53056414G>C	uc010epq.1	+	5	422	c.245G>C	c.(244-246)AGA>ACA	p.R82T	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	82	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CAAGGCAATAGAGAAGTGATC	0.363		NaN											0	0	0	0.003954	0	23	163									
ZNF600	162966	broad.mit.edu	37	19	53270485	53270485	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:53270485G>A	uc002qab.3	-	3	810	c.524C>T	c.(523-525)TCA>TTA	p.S175L		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	175	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		CCTTAAGAGTGAGCTACAATT	0.373		NaN											0	0	0	0.006122	0	15	74									
ZNF160	90338	broad.mit.edu	37	19	53572607	53572607	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:53572607C>G	uc010eqk.2	-	7	1596	c.1180G>C	c.(1180-1182)GAG>CAG	p.E394Q	ZNF160_uc002qaq.3_Missense_Mutation_p.E394Q|ZNF160_uc002qar.3_Missense_Mutation_p.E394Q	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	394					hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TAAGGTTTCTCTCCAGTGTGA	0.398		NaN											0	0	0	0.001855	0	13	149									
ZNF347	84671	broad.mit.edu	37	19	53643596	53643596	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:53643596C>G	uc002qbb.1	-	5	2554	c.2485G>C	c.(2485-2487)GAG>CAG	p.E829Q	ZNF347_uc010eql.1_Missense_Mutation_p.E830Q|ZNF347_uc002qbc.1_Missense_Mutation_p.E830Q	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	829					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		GGTTTGAACTCTGACTTTAGA	0.398		NaN											0	0	0	0.003755	0	29	112									
MBOAT7	79143	broad.mit.edu	37	19	54692090	54692090	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:54692090G>A	uc002qdq.2	-	4	453	c.187C>T	c.(187-189)CTC>TTC	p.L63F	MBOAT7_uc010erg.2_5'Flank|MBOAT7_uc010yem.1_Missense_Mutation_p.L45F|MBOAT7_uc002qdr.2_Missense_Mutation_p.L63F|MBOAT7_uc002qds.2_Missense_Mutation_p.P32L|MBOAT7_uc010yen.1_Missense_Mutation_p.P32L|MBOAT7_uc002qdt.3_Missense_Mutation_p.L63F|TSEN34_uc010yeo.1_5'Flank|TSEN34_uc002qdu.2_5'Flank|TSEN34_uc002qdv.2_5'Flank	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	63	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCCTGAATGAGGGCCCAGGTC	0.602		NaN											0	0	0	0.001368	0	10	158									
TTYH1	57348	broad.mit.edu	37	19	54942276	54942276	+	Splice_Site	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:54942276G>A	uc002qfq.2	+	10	1125	c.1033_splice	c.e10-1	p.K345_splice	TTYH1_uc010yey.1_Splice_Site_p.E375_splice|TTYH1_uc002qfr.2_Splice_Site_p.K345_splice|TTYH1_uc002qft.2_Splice_Site_p.K345_splice|TTYH1_uc002qfu.1_Splice_Site_p.K257_splice	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1						cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		TCGCCCCGCAGAAGCCTCTGC	0.403		NaN											0	0	0	0.008361	0	22	104									
LILRB1	10859	broad.mit.edu	37	19	55143036	55143036	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:55143036C>G	uc002qgj.2	+	5	496	c.156C>G	c.(154-156)GGC>GGG	p.G52G	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.G52G|LILRB1_uc002qgk.2_Silent_p.G52G|LILRB1_uc002qgm.2_Silent_p.G52G|LILRB1_uc010erq.2_Silent_p.G52G|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	52	Ig-like C2-type 1.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GTCAGGGGGGCCAGGAGACCC	0.577		NaN								HNSCC(37;0.09)			0	0	0	0.004672	0	3	113									
KIR2DL1	3802	broad.mit.edu	37	19	55286739	55286739	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:55286739G>A	uc002qhb.1	+	4	531	c.493G>A	c.(493-495)GAG>AAG	p.E165K	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.E165K	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	165	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CAGGGAAGGGGAGGCCCATGA	0.612		NaN											0	0	0	0.00632	0	23	54									
NLRP7	199713	broad.mit.edu	37	19	55452917	55452917	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:55452917C>T	uc002qih.3	-	2	239	c.163G>A	c.(163-165)GCA>ACA	p.A55T	NLRP7_uc002qig.3_Missense_Mutation_p.A55T|NLRP7_uc002qii.3_Missense_Mutation_p.A55T|NLRP7_uc010esk.2_Missense_Mutation_p.A55T|NLRP7_uc010esl.2_Missense_Mutation_p.A83T	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	55	DAPIN.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGAATTTCTGCCAGTTTCTTG	0.443		NaN											0	0	0	0.000602	0	3	70									
NLRP7	199713	broad.mit.edu	37	19	55453052	55453052	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:55453052G>A	uc002qih.3	-	2	104	c.28C>T	c.(28-30)CTG>TTG	p.L10L	NLRP7_uc002qig.3_Silent_p.L10L|NLRP7_uc002qii.3_Silent_p.L10L|NLRP7_uc010esk.2_Silent_p.L10L|NLRP7_uc010esl.2_Silent_p.L38L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	10	DAPIN.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGGGTCTGCAGAGTCCACTCT	0.483		NaN											0	0	0	0.001984	0	5	36									
SYT5	6861	broad.mit.edu	37	19	55686641	55686641	+	Missense_Mutation	SNP	G	G	A	rs141073446		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:55686641G>A	uc002qjm.1	-	5	1667	c.607C>T	c.(607-609)CGC>TGC	p.R203C	SYT5_uc002qjp.2_Missense_Mutation_p.R200C|SYT5_uc002qjn.1_Missense_Mutation_p.R203C|SYT5_uc002qjo.1_Missense_Mutation_p.R203C	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	203	Cytoplasmic (Potential).|C2 1.				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		GCGTCATTGCGAGAGAAGCGG	0.677		NaN											0	0	0	0.000602	0	3	41									
NLRP11	204801	broad.mit.edu	37	19	56329303	56329303	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:56329303C>G	uc010ygf.1	-	4	949	c.238G>C	c.(238-240)GAT>CAT	p.D80H	NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	80	DAPIN.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CTACAAAGATCTTCCTTACGC	0.463		NaN											0	0	0	0.004482	0	8	84									
NLRP4	147945	broad.mit.edu	37	19	56382323	56382323	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:56382323G>A	uc002qmd.3	+	7	2907	c.2485G>A	c.(2485-2487)GAG>AAG	p.E829K	NLRP4_uc002qmf.2_Missense_Mutation_p.E754K|NLRP4_uc010etf.2_Missense_Mutation_p.E604K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	829	LRR 5.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AACTCTCTGCGAGGCCTTGAA	0.498		NaN											0	0	0	0.001368	0	9	86									
GALP	85569	broad.mit.edu	37	19	56688513	56688513	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:56688513C>T	uc002qmo.1	+	2	118	c.36C>T	c.(34-36)CTC>CTT	p.L12L	GALP_uc010eti.2_Silent_p.L12L	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	12					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		TCCTCCTCCTCGTCCTCTTGC	0.622		NaN											0	0	0	0.001168	0	5	49									
ZNF582	147948	broad.mit.edu	37	19	56895501	56895501	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:56895501C>T	uc002qmz.1	-	5	1444	c.1285G>A	c.(1285-1287)GGG>AGG	p.G429R	ZNF582_uc002qmy.2_Missense_Mutation_p.G460R	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	429	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		AAAGCCTTCCCACATTCCTTA	0.393		NaN											0	0	0	0.000602	0	5	49									
USP29	57663	broad.mit.edu	37	19	57640824	57640824	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:57640824G>C	uc002qny.2	+	4	1137	c.781G>C	c.(781-783)GAG>CAG	p.E261Q		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	261					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATTGGAACCAGAGCACAGCCA	0.478		NaN											0	0	0	0.000602	0	4	74									
USP29	57663	broad.mit.edu	37	19	57640872	57640872	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:57640872G>A	uc002qny.2	+	4	1185	c.829G>A	c.(829-831)GAC>AAC	p.D277N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	277					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity	p.D277E(1)		lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGTGCCTCTTGACTCTCATTC	0.473		NaN											0	0	0	0.000602	0	5	30									
USP29	57663	broad.mit.edu	37	19	57641088	57641088	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:57641088G>A	uc002qny.2	+	4	1401	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	349					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GATCAAGAGAGAATTACTTGG	0.378		NaN											0	0	0	0.001168	0	5	69									
USP29	57663	broad.mit.edu	37	19	57641253	57641253	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:57641253G>A	uc002qny.2	+	4	1566	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	404					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATGTGGGGATGAAAATTCATC	0.393		NaN											0	0	0	0.001168	0	6	63									
ZNF264	9422	broad.mit.edu	37	19	57723168	57723168	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:57723168G>C	uc002qob.2	+	4	1116	c.703G>C	c.(703-705)GAA>CAA	p.E235Q		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	235	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		TGAATGCACAGAATGTGGGAA	0.428		NaN											0	0	0	0.008291	0	9	77									
ZNF530	348327	broad.mit.edu	37	19	58117277	58117277	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:58117277G>A	uc002qpk.2	+	3	604	c.384G>A	c.(382-384)TGG>TGA	p.W128*	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GAGATTTCTGGATGAGTTCAA	0.458		NaN											0	0	0	0.003163	0	14	35									
ZNF606	80095	broad.mit.edu	37	19	58490857	58490857	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:58490857C>G	uc002qqw.2	-	7	1809	c.1191G>C	c.(1189-1191)GAG>GAC	p.E397D	ZNF606_uc010yhp.1_Missense_Mutation_p.E307D	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	397					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		CATAGGGTTTCTCTGCAGTGT	0.378		NaN											0	0	0	0.001984	0	5	55									
TRIM28	10155	broad.mit.edu	37	19	59059693	59059693	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:59059693G>A	uc002qtg.1	+	8	1423	c.1134G>A	c.(1132-1134)ATG>ATA	p.M378I	TRIM28_uc010eut.1_Missense_Mutation_p.M296I|TRIM28_uc002qth.1_Missense_Mutation_p.M1I	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	378					epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		CCCTCAAGATGATTGTGGATC	0.532		NaN											0	0	0	0.006214	0	8	102									
TAF1B	9014	broad.mit.edu	37	2	10045054	10045054	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:10045054C>T	uc002qzz.2	+	9	974	c.874C>T	c.(874-876)CGT>TGT	p.R292C	TAF1B_uc010exc.2_Missense_Mutation_p.R292C|TAF1B_uc002qzy.3_Missense_Mutation_p.R292C|TAF1B_uc010yja.1_Missense_Mutation_p.R37C|TAF1B_uc010exd.2_Missense_Mutation_p.R37C	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	292					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AGATTTGCCTCGTTTTCCAGA	0.378		NaN											0	0	0	0.001168	0	6	53									
MYCN	4613	broad.mit.edu	37	2	16085691	16085691	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:16085691C>T	uc002rci.2	+	3	1167	c.867C>T	c.(865-867)TCC>TCT	p.S289S	MYCN_uc010yjr.1_Silent_p.S281S	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	289					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			GTTCCTCCTCCAACACCAAGG	0.458		NaN	A		neuroblastoma								0	0	0	0.001368	0	12	73									
NT5C1B	93034	broad.mit.edu	37	2	18745124	18745124	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:18745124C>T	uc002rcz.2	-	10	1875	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	NT5C1B_uc002rcy.2_Missense_Mutation_p.E591K|NT5C1B_uc010exr.2_Intron|NT5C1B_uc010yju.1_Missense_Mutation_p.E531K|NT5C1B_uc002rda.2_Missense_Mutation_p.E531K|NT5C1B_uc010yjv.1_Missense_Mutation_p.E608K|NT5C1B_uc010yjw.1_Missense_Mutation_p.E574K|NT5C1B_uc010exs.2_Missense_Mutation_p.E593K	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	591					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TGTGCCCCTTCAATGTGGAAC	0.468		NaN											0	0	0	0.001984	0	7	44									
OTOF	9381	broad.mit.edu	37	2	26700125	26700125	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:26700125C>T	uc002rhk.2	-	21	2565	c.2438G>A	c.(2437-2439)CGG>CAG	p.R813Q	OTOF_uc002rhh.2_Missense_Mutation_p.R66Q|OTOF_uc002rhi.2_Missense_Mutation_p.R123Q|OTOF_uc002rhj.2_Missense_Mutation_p.R66Q	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	813	Cytoplasmic (Potential).|Potential.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACCTGGGCCCGCAGCATCCT	0.652		NaN											0	0	0	0.000602	0	5	29									
EMILIN1	11117	broad.mit.edu	37	2	27308605	27308605	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:27308605C>T	uc002rii.3	+	8	3201	c.2773C>T	c.(2773-2775)CGG>TGG	p.R925W	EMILIN1_uc002rik.3_Missense_Mutation_p.R160W|KHK_uc002ril.2_5'Flank|KHK_uc002rim.2_5'Flank|KHK_uc002rin.2_5'Flank|KHK_uc002rio.2_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	925	C1q.				cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACTGGGCACCGGCACGAGAA	0.667		NaN											0	0	0	0.003163	0	14	124									
GTF3C2	2976	broad.mit.edu	37	2	27550106	27550106	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:27550106G>T	uc002rjv.1	-	19	2818	c.2455C>A	c.(2455-2457)CAG>AAG	p.Q819K	MPV17_uc002rjt.2_5'Flank|GTF3C2_uc010eyy.1_Missense_Mutation_p.Q274K|GTF3C2_uc002rju.1_Missense_Mutation_p.Q830K|GTF3C2_uc002rjw.1_Missense_Mutation_p.Q819K	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	819						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTCCCTCCTGCATGCGCAGC	0.507		NaN											1	0	0.00621372	0.006214	0.00633594	6	90									
KRTCAP3	200634	broad.mit.edu	37	2	27666827	27666827	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:27666827G>A	uc002rks.2	+	6	644	c.627G>A	c.(625-627)ATG>ATA	p.M209I	KRTCAP3_uc010ylr.1_Missense_Mutation_p.M209I|KRTCAP3_uc002rkt.2_Missense_Mutation_p.M191I	NM_173853	NP_776252	Q53RY4	KCP3_HUMAN	keratinocyte associated protein 3	209						integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					TAGAGGAAATGACAGAGCTTG	0.363		NaN											0	0	0	0.001984	0	5	45									
XDH	7498	broad.mit.edu	37	2	31562480	31562480	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:31562480C>T	uc002rnv.1	-	34	3728	c.3649G>A	c.(3649-3651)GAG>AAG	p.E1217K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1217					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGGCTCCCCTCGGGGGAATAG	0.612		NaN											0	0	0	0.001984	0	6	58									
XDH	7498	broad.mit.edu	37	2	31598300	31598300	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:31598300G>A	uc002rnv.1	-	15	1627	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	516				FFF -> LLL (in Ref. 3; AAA75287).	purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGAACTTGAAGAAGAAGCTGA	0.597		NaN											0	0	0	0.00245	0	12	108									
BIRC6	57448	broad.mit.edu	37	2	32640519	32640519	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:32640519G>A	uc010ezu.2	+	10	2294	c.2160G>A	c.(2158-2160)TTG>TTA	p.L720L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	720					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TTCAGTGCTTGAGGCTGCCAA	0.483		NaN											0	0	0	0.00308	0	7	20									
CRIM1	51232	broad.mit.edu	37	2	36669853	36669853	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:36669853G>T	uc002rpd.2	+	4	883	c.844G>T	c.(844-846)GAT>TAT	p.D282Y		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	282	Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				ACTAACTGCAGATGGTTGCTG	0.468		NaN											1	0	6.12954e-19	0.004656	6.61439e-19	21	181									
HEATR5B	54497	broad.mit.edu	37	2	37280645	37280645	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:37280645C>G	uc002rpp.1	-	17	2601	c.2505G>C	c.(2503-2505)AAG>AAC	p.K835N		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	835							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				AAGTAAATACCTTTAGTGCAC	0.308		NaN											0	0	0	0.00308	0	7	44									
GALM	130589	broad.mit.edu	37	2	38893390	38893390	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:38893390G>C	uc002rqy.2	+	1	339	c.87G>C	c.(85-87)TTG>TTC	p.L29F		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	29					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				CAGACCTCTTGAGAGTGGACA	0.602		NaN											0	0	0	0.008291	0	9	81									
ZFP36L2	678	broad.mit.edu	37	2	43452198	43452198	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:43452198C>G	uc002rsv.3	-	2	1036	c.745G>C	c.(745-747)GAG>CAG	p.E249Q	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	249					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				GGCCGCGGCTCCCGCGGGAAG	0.617		NaN											0	0	0	0.009096	0	3	36									
ABCG8	64241	broad.mit.edu	37	2	44102359	44102359	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:44102359G>A	uc002rtq.2	+	11	1653	c.1563G>A	c.(1561-1563)CTG>CTA	p.L521L	ABCG8_uc010yoa.1_Silent_p.L520L	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	521	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TGGCCAACCTGAGGCCAGGCC	0.622		NaN											0	0	0	0.003163	0	12	140									
SPTBN1	6711	broad.mit.edu	37	2	54843421	54843421	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:54843421G>A	uc002rxu.2	+	5	801	c.552G>A	c.(550-552)CAG>CAA	p.Q184Q	SPTBN1_uc002rxv.1_Silent_p.Q184Q|SPTBN1_uc002rxx.2_Silent_p.Q171Q	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	184	CH 2.|Actin-binding.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			TGTGGTGCCAGATGAAGACAG	0.433		NaN											0	0	0	0.006122	0	15	75									
REL	5966	broad.mit.edu	37	2	61148963	61148963	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:61148963G>A	uc002sam.1	+	11	1377	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	REL_uc002san.1_Missense_Mutation_p.E353K	NM_002908	NP_002899	Q04864	REL_HUMAN	v-rel reticuloendotheliosis viral oncogene	385					positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	all_hematologic(2;0.0797)	Ovarian(717;0.0728)	LUSC - Lung squamous cell carcinoma(5;6.2e-08)|Lung(5;1.65e-06)|Epithelial(17;0.064)|all cancers(80;0.221)			AAGTCAAGCAGAATCCTACTA	0.453		NaN	A		Hodgkin Lymphoma								0	0	0	0.006214	0	9	82									
XPO1	7514	broad.mit.edu	37	2	61721193	61721193	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:61721193C>T	uc002sbj.2	-	12	1809	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	XPO1_uc010fcl.2_Missense_Mutation_p.E357K|XPO1_uc010ypn.1_Missense_Mutation_p.E357K|XPO1_uc002sbk.2_5'UTR|XPO1_uc002sbh.2_Missense_Mutation_p.E8K	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	361	HEAT 3.|Necessary for HTLV-1 Rex-mediated mRNA export.|Interaction with Ran and nuclear export complex formation.				intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			TCAGTTTCTTCTACTTCAGAT	0.348		NaN											0	0	0	0.000602	0	4	36									
B3GNT2	10678	broad.mit.edu	37	2	62450306	62450306	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:62450306G>C	uc002sbs.2	+	2	1189	c.951G>C	c.(949-951)CTG>CTC	p.L317L		NM_006577	NP_006568	Q9NY97	B3GN2_HUMAN	UDP-GlcNAc:betaGal	317	Lumenal (Potential).					Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1	Lung NSC(7;0.031)|all_lung(7;0.0634)		LUSC - Lung squamous cell carcinoma(7;3.55e-06)|Epithelial(17;0.0963)			ACCTGGCCCTGAGGCTGTACC	0.522		NaN											0	0	0	0.004656	0	23	97									
OTX1	5013	broad.mit.edu	37	2	63283012	63283012	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:63283012C>T	uc002scd.2	+	5	874	c.626C>T	c.(625-627)TCC>TTC	p.S209F	OTX1_uc010ypt.1_Missense_Mutation_p.S143F	NM_014562	NP_055377	P32242	OTX1_HUMAN	orthodenticle homeobox 1	209						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(2)	2	Lung NSC(7;0.121)|all_lung(7;0.211)					ATGCAGCGCTCCGTAGCTGCA	0.682		NaN											0	0	0	0.00308	0	7	36									
CEP68	23177	broad.mit.edu	37	2	65296855	65296855	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:65296855G>A	uc002sdl.3	+	2	491	c.277G>A	c.(277-279)GAG>AAG	p.E93K	CEP68_uc002sdj.2_Missense_Mutation_p.E93K|CEP68_uc010yqb.1_Missense_Mutation_p.E93K|CEP68_uc002sdk.3_Missense_Mutation_p.E93K|CEP68_uc010yqc.1_Missense_Mutation_p.E93K|CEP68_uc010yqd.1_Missense_Mutation_p.E93K	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	93					centrosome organization	centrosome				skin(1)	1						GCCCGTAGCTGAGAGGTCTGA	0.617		NaN											0	0	0	0.008291	0	9	80									
PCYOX1	51449	broad.mit.edu	37	2	70485407	70485407	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:70485407C>T	uc002sgn.3	+	1	177	c.111C>T	c.(109-111)ATC>ATT	p.I37I	PCYOX1_uc010fdo.2_Intron|PCYOX1_uc010yqu.1_Silent_p.I37I	NM_016297	NP_057381	Q9UHG3	PCYOX_HUMAN	prenylcysteine oxidase 1 precursor	37					prenylated protein catabolic process	lysosome|very-low-density lipoprotein particle	prenylcysteine oxidase activity			central_nervous_system(1)	1						CAGATAAAATCGGTAGGCGAG	0.607		NaN											0	0	0	0.001168	0	4	17									
NAGK	55577	broad.mit.edu	37	2	71302769	71302769	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:71302769G>A	uc002shp.3	+	7	1070	c.664G>A	c.(664-666)GAA>AAA	p.E222K	NAGK_uc010fea.2_RNA|NAGK_uc002shq.3_Missense_Mutation_p.E73K|NAGK_uc002shr.2_Missense_Mutation_p.E171K	NM_017567	NP_060037	Q9UJ70	NAGK_HUMAN	N-Acetylglucosamine kinase	222					N-acetylglucosamine metabolic process|N-acetylmannosamine metabolic process		ATP binding|N-acetylglucosamine kinase activity|protein binding				0					N-Acetyl-D-glucosamine(DB00141)	GAAAATTGCAGAAGGTACTGG	0.493		NaN											0	0	0	0.001368	0	10	56									
ALMS1	7840	broad.mit.edu	37	2	73799556	73799556	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:73799556C>T	uc002sje.1	+	18	10666	c.10555C>T	c.(10555-10557)CAT>TAT	p.H3519Y	ALMS1_uc002sjf.1_Missense_Mutation_p.H3475Y|ALMS1_uc002sjg.2_Missense_Mutation_p.H2905Y|ALMS1_uc002sjh.1_Missense_Mutation_p.H2905Y	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3517					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTTTCAGCATCATCCAGACAA	0.383		NaN											0	0	0	0.001984	0	6	19									
MOBKL1B	55233	broad.mit.edu	37	2	74399752	74399752	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:74399752G>A	uc002skh.3	-	2	336	c.142C>T	c.(142-144)CCT>TCT	p.P48S	MOBKL1B_uc002ski.2_Missense_Mutation_p.P48S	NM_018221	NP_060691	Q9H8S9	MOL1B_HUMAN	Mob4B protein	48					hippo signaling cascade		metal ion binding|protein binding				0						TCTCCCTCAGGCAACATAACA	0.373		NaN											0	0	0	0.006214	0	7	99									
WDR54	84058	broad.mit.edu	37	2	74650498	74650498	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:74650498G>C	uc002slb.2	+	4	398	c.338G>C	c.(337-339)GGA>GCA	p.G113A		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	113											0						CTGGACTCTGGAGATGCCTCC	0.552		NaN											0	0	0	0.00632	0	25	262									
AUP1	550	broad.mit.edu	37	2	74756246	74756246	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:74756246C>T	uc010yry.1	-	3	570	c.352G>A	c.(352-354)GAG>AAG	p.E118K	DQX1_uc010yrw.1_5'Flank|AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_Intron|AUP1_uc002smg.2_Intron|AUP1_uc002smh.2_5'UTR|AUP1_uc010yrx.1_Intron|HTRA2_uc002smi.1_5'Flank|HTRA2_uc002smj.1_5'Flank|HTRA2_uc002smk.1_5'Flank|HTRA2_uc002sml.1_5'Flank|HTRA2_uc002smm.1_5'Flank|HTRA2_uc002smn.1_5'Flank|HTRA2_uc010ffl.2_5'Flank			Q9Y679	AUP1_HUMAN	SubName: Full=cDNA FLJ58836, highly similar to Ancient ubiquitous protein 1;	118	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nucleus	protein binding				0						CTCTCGGCCTCGCTCTCACTC	0.602		NaN											0	0	0	0.008291	0	8	51									
POLR1A	25885	broad.mit.edu	37	2	86255054	86255054	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:86255054C>T	uc002sqs.2	-	33	5395	c.5016G>A	c.(5014-5016)ATG>ATA	p.M1672I	POLR1A_uc010ytb.1_Missense_Mutation_p.M1038I	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1672					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TTTCAAATGTCATCTGCTGTA	0.542		NaN											0	0	0	0.001368	0	11	95									
ADRA2B	151	broad.mit.edu	37	2	96780656	96780656	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:96780656G>A	uc002svi.2	-	3	1242	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	414	Helical; Name=7; (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	TGCAGTAGCCGATCCAGAAGA	0.582		NaN											0	0	0	0.004672	0	3	28									
CIAO1	9391	broad.mit.edu	37	2	96932160	96932160	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:96932160G>A	uc002svs.2	+	1	277	c.72G>A	c.(70-72)TGG>TGA	p.W24*	TMEM127_uc002svq.2_5'Flank|TMEM127_uc002svr.2_5'Flank	NM_004804	NP_004795	O76071	CIAO1_HUMAN	WD repeat domain 39	24	WD 1.				chromosome segregation|iron-sulfur cluster assembly|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter	MMXD complex	protein binding				0						TCCTGGCCTGGAACCCCGCGG	0.741		NaN											0	0	0	0.004482	0	8	27									
NPAS2	4862	broad.mit.edu	37	2	101554280	101554280	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:101554280C>T	uc002tap.1	+	5	625	c.339C>T	c.(337-339)ATC>ATT	p.I113I	NPAS2_uc010yvt.1_Silent_p.I178I	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	113	PAS 1.				central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CTGACAGTATCACGCCTCTCC	0.453		NaN											0	0	0	0.00874	0	31	178									
IL18RAP	8807	broad.mit.edu	37	2	103057804	103057804	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:103057804G>A	uc002tbx.2	+	7	1247	c.763G>A	c.(763-765)GAT>AAT	p.D255N	IL18RAP_uc010fiz.2_Missense_Mutation_p.D113N	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	255	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						AGATATTCTGGATCCTGTCGA	0.418		NaN											0	0	0	0.009096	0	3	63									
BUB1	699	broad.mit.edu	37	2	111419343	111419343	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:111419343G>C	uc002tgc.2	-	10	1145	c.1033C>G	c.(1033-1035)CAG>GAG	p.Q345E	BUB1_uc010yxh.1_Missense_Mutation_p.Q325E|BUB1_uc010fkb.2_Missense_Mutation_p.Q345E|BUB1_uc002tgd.2_Missense_Mutation_p.Q345E	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	345					apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		GGTGTCTGCTGATAGGTTACT	0.488		NaN											0	0	0	0.006214	0	7	95									
SLC20A1	6574	broad.mit.edu	37	2	113417184	113417184	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:113417184C>G	uc002tib.2	+	8	1898	c.1452C>G	c.(1450-1452)GTC>GTG	p.V484V	SLC20A1_uc002tic.1_Silent_p.V296V	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	484	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						ACATGAGTGTCAAGGCAGAGA	0.463		NaN											0	0	0	0.012213	0	26	135									
IL1B	3553	broad.mit.edu	37	2	113593149	113593149	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:113593149C>T	uc002tii.1	-	3	180	c.93G>A	c.(91-93)CAG>CAA	p.Q31Q	IL1B_uc002tih.1_5'UTR	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	31					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	TTACCTTCATCTGTTTAGGGC	0.423		NaN											0	0	0	0.00308	0	6	61									
EN1	2019	broad.mit.edu	37	2	119600619	119600619	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:119600619G>A	uc002tlm.2	-	2	2090	c.1074C>T	c.(1072-1074)ATC>ATT	p.I358I		NM_001426	NP_001417	Q05925	HME1_HUMAN	engrailed homeobox 1	358	Homeobox.				skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)	2						TGGCTTTCTTGATCTTGGCGC	0.602		NaN											0	0	0	0.008291	0	10	62									
EN1	2019	broad.mit.edu	37	2	119604494	119604494	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:119604494G>C	uc002tlm.2	-	1	1266	c.250C>G	c.(250-252)CAG>GAG	p.Q84E		NM_001426	NP_001417	Q05925	HME1_HUMAN	engrailed homeobox 1	84					skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)	2						GCGAGATGCTGAggcggcggg	0.363		NaN											0	0	0	0.00308	0	5	32									
DBI	1622	broad.mit.edu	37	2	120125785	120125785	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:120125785G>A	uc002tlv.2	+	2	155	c.31G>A	c.(31-33)GAG>AAG	p.E11K	C2orf76_uc002tls.2_5'Flank|C2orf76_uc010flf.1_5'Flank|C2orf76_uc010yyg.1_5'Flank|C2orf76_uc002tlt.2_5'Flank|C2orf76_uc002tlu.2_5'Flank|DBI_uc010yyh.1_Missense_Mutation_p.E28K|DBI_uc010yyi.1_Missense_Mutation_p.E28K|DBI_uc010yyj.1_RNA|DBI_uc010yyk.1_Missense_Mutation_p.E53K|DBI_uc010yyl.1_Missense_Mutation_p.E28K|DBI_uc010yym.1_Missense_Mutation_p.E21K|DBI_uc010yyn.1_Missense_Mutation_p.E28K|DBI_uc002tlw.2_Missense_Mutation_p.E28K|DBI_uc010yyo.1_RNA|DBI_uc002tlx.2_Missense_Mutation_p.E12K|DBI_uc010yyp.1_5'Flank	NM_001079862	NP_001073331	P07108	ACBP_HUMAN	diazepam binding inhibitor isoform 3	11	ACB.				transport		benzodiazepine receptor binding|fatty-acyl-CoA binding				0						GAAAGCTGCAGAGGAGGTTAG	0.502		NaN											0	0	0	0.003163	0	13	93									
PTPN4	5775	broad.mit.edu	37	2	120684226	120684226	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:120684226G>A	uc002tmf.1	+	13	1825	c.1054G>A	c.(1054-1056)GAC>AAC	p.D352N	PTPN4_uc010flj.1_Missense_Mutation_p.D65N	NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	352						cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	GGCAAATAAAGACAGGGTATT	0.284		NaN											0	0	0	0.001855	0	9	50									
FAM123C	205147	broad.mit.edu	37	2	131520311	131520311	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:131520311C>G	uc002trw.2	+	2	856	c.666C>G	c.(664-666)CTC>CTG	p.L222L	FAM123C_uc010fmv.2_Silent_p.L222L|FAM123C_uc010fms.1_Silent_p.L222L|FAM123C_uc010fmt.1_Silent_p.L222L|FAM123C_uc010fmu.1_Silent_p.L222L	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	222										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		ACAGCGAGCTCCTGGCCGATG	0.677		NaN											0	0	0	0.004007	0	15	100									
LRP1B	53353	broad.mit.edu	37	2	141093288	141093288	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:141093288C>T	uc002tvj.1	-	78	12984	c.12012G>A	c.(12010-12012)CTG>CTA	p.L4004L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4004	Extracellular (Potential).|LDL-receptor class B 34.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAGAGTACCTCAGACTGGTCC	0.458		NaN								TSP Lung(27;0.18)			0	0	0	0.006214	0	8	33									
MBD5	55777	broad.mit.edu	37	2	149270460	149270460	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:149270460G>A	uc002twm.3	+	15	5423	c.4435G>A	c.(4435-4437)GAC>AAC	p.D1479N	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.D1479N|MBD5_uc002two.2_Missense_Mutation_p.D737N|MBD5_uc002twp.2_Missense_Mutation_p.D529N	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1479						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CCCACAGGGTGACAGACAAAT	0.408		NaN											0	0	0	0.001168	0	5	73									
NEB	4703	broad.mit.edu	37	2	152362007	152362007	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:152362007C>G	uc010fnx.2	-	137	18815	c.18624G>C	c.(18622-18624)CAG>CAC	p.Q6208H	NEB_uc002txr.2_Missense_Mutation_p.Q2631H|RIF1_uc002txp.2_Intron|NEB_uc002txq.2_5'Flank|NEB_uc010zca.1_Missense_Mutation_p.Q39H|NEB_uc010zcb.1_Missense_Mutation_p.Q39H|NEB_uc002txt.3_Missense_Mutation_p.Q713H	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6208	Nebulin 170.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TAATGTGCTTCTGCGTCTCCT	0.468		NaN											0	0	0	0.002299	0	20	116									
STAM2	10254	broad.mit.edu	37	2	153003708	153003708	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:153003708C>T	uc002tyc.3	-	5	765	c.415G>A	c.(415-417)GAA>AAA	p.E139K	STAM2_uc010foa.1_Missense_Mutation_p.E139K|STAM2_uc002tyd.2_Missense_Mutation_p.E139K	NM_005843	NP_005834	O75886	STAM2_HUMAN	signal transducing adaptor molecule 2	139	VHS.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.22)		GTAATTCCTTCTTCTTTCATA	0.358		NaN											0	0	0	0.000602	0	4	58									
BAZ2B	29994	broad.mit.edu	37	2	160289391	160289391	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:160289391C>T	uc002uao.2	-	9	2129	c.1777G>A	c.(1777-1779)GGA>AGA	p.G593R	BAZ2B_uc002uap.2_Missense_Mutation_p.G591R|BAZ2B_uc002uas.1_Missense_Mutation_p.G530R|BAZ2B_uc002uaq.1_Missense_Mutation_p.G521R|BAZ2B_uc002uar.1_Missense_Mutation_p.G166R	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	593					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GAATCTGTTCCTCTGAATTGT	0.279		NaN											0	0	0	0.003163	0	16	82									
LY75	4065	broad.mit.edu	37	2	160667045	160667045	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:160667045G>C	uc002ubc.3	-	32	4760	c.4691C>G	c.(4690-4692)TCA>TGA	p.S1564*	LY75_uc002ubb.3_Nonsense_Mutation_p.S1564*|LY75_uc010fos.2_Nonsense_Mutation_p.S1564*	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1564	Extracellular (Potential).|C-type lectin 10.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		ACCATGTTTTGAACACAATTT	0.254		NaN											0	0	0	0.006122	0	15	129									
PLA2R1	22925	broad.mit.edu	37	2	160832638	160832638	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:160832638C>T	uc002ube.1	-	17	2743	c.2536G>A	c.(2536-2538)GAT>AAT	p.D846N	PLA2R1_uc010zcp.1_Missense_Mutation_p.D846N|PLA2R1_uc002ubf.2_Missense_Mutation_p.D846N	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	846	Extracellular (Potential).|C-type lectin 5.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GTGAGAAGATCACTGTGCAGC	0.403		NaN											0	0	0	0.00308	0	7	61									
PLA2R1	22925	broad.mit.edu	37	2	160869838	160869838	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:160869838G>A	uc002ube.1	-	10	1807	c.1600C>T	c.(1600-1602)CGA>TGA	p.R534*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.R534*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.R534*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	534	Extracellular (Potential).|C-type lectin 3.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TCAAAGCTTCGAAGGACTGTG	0.368		NaN											0	0	0	0.001368	0	8	49									
PLA2R1	22925	broad.mit.edu	37	2	160889477	160889477	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:160889477G>C	uc002ube.1	-	4	1041	c.834C>G	c.(832-834)TTC>TTG	p.F278L	PLA2R1_uc010zcp.1_Missense_Mutation_p.F278L|PLA2R1_uc002ubf.2_Missense_Mutation_p.F278L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	278	Extracellular (Potential).|C-type lectin 1.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TACCCCTTATGAAATTTTCTT	0.358		NaN											0	0	0	0.004656	0	18	123									
RBMS1	5937	broad.mit.edu	37	2	161141534	161141534	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:161141534C>T	uc002ubo.2	-	8	1222	c.778G>A	c.(778-780)GAC>AAC	p.D260N	RBMS1_uc002ubj.2_Missense_Mutation_p.D224N|RBMS1_uc002ubk.2_Missense_Mutation_p.D224N|RBMS1_uc002ubl.2_Missense_Mutation_p.D255N|RBMS1_uc002ubn.2_Missense_Mutation_p.D257N|RBMS1_uc002ubi.3_Missense_Mutation_p.D257N|RBMS1_uc002ubm.2_Missense_Mutation_p.D227N|RBMS1_uc002ubp.2_Missense_Mutation_p.D260N|RBMS1_uc010fox.2_Missense_Mutation_p.D260N	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	260					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						GTAGTTGGGTCGTAAGTAAGT	0.323		NaN											0	0	0	0.010729	0	9	57									
FIGN	55137	broad.mit.edu	37	2	164466154	164466154	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:164466154C>T	uc002uck.1	-	3	2499	c.2188G>A	c.(2188-2190)GAA>AAA	p.E730K		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	730						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						AAAGCATTTTCAAAGTCTTGA	0.463		NaN											0	0	0	0.001984	0	6	52									
TTC21B	79809	broad.mit.edu	37	2	166797590	166797590	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:166797590C>T	uc002udk.2	-	6	790	c.657G>A	c.(655-657)ATG>ATA	p.M219I	TTC21B_uc002udl.2_Missense_Mutation_p.M219I|uc002udm.1_Intron	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	219						cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						GTTGTAATTTCATTTTCTTAA	0.403		NaN											0	0	0	0.000602	0	4	21									
HOXD13	3239	broad.mit.edu	37	2	176958257	176958257	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:176958257C>T	uc002ukf.1	+	1	726	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	213					skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		TGTCCACTTTCGGCTCCGGGG	0.617		NaN	T	NUP98	AML*								0	0	0	0.001855	0	10	142									
HOXD4	3233	broad.mit.edu	37	2	177016457	177016457	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:177016457G>A	uc002uks.2	+	1	345	c.96G>A	c.(94-96)CAG>CAA	p.Q32Q		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	32						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		TAGGCGAGCAGGGCGCCGACT	0.627		NaN											0	0	0	0.008291	0	8	71									
TTC30A	92104	broad.mit.edu	37	2	178482268	178482268	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:178482268C>G	uc002ulo.2	-	1	1427	c.1162G>C	c.(1162-1164)GAG>CAG	p.E388Q		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	388					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			CGAAGCTGCTCAGTCAGCATC	0.463		NaN											0	0	0	0.008871	0	18	129									
TTC30A	92104	broad.mit.edu	37	2	178482343	178482343	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:178482343C>G	uc002ulo.2	-	1	1352	c.1087G>C	c.(1087-1089)GAT>CAT	p.D363H		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	363					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			ATCAGGGCATCTAAGAAGTCA	0.473		NaN											0	0	0	0.006122	0	16	99									
TTN	7273	broad.mit.edu	37	2	179489391	179489391	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:179489391C>T	uc010zfg.1	-	191	37136	c.36912G>A	c.(36910-36912)CTG>CTA	p.L12304L	TTN_uc010zfh.1_Silent_p.L5999L|TTN_uc010zfi.1_Silent_p.L5932L|TTN_uc010zfj.1_Silent_p.L5807L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13231							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCACACTCCAGCACTGCAG	0.458		NaN											0	0	0	0.004672	0	3	13									
TTN	7273	broad.mit.edu	37	2	179594559	179594559	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:179594559G>C	uc010zfg.1	-	60	14913	c.14689C>G	c.(14689-14691)CTA>GTA	p.L4897V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L1558V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5824							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCCGTCTAGATACCAAGAC	0.428		NaN											0	0	0	0.000602	0	4	27									
GTF3C3	9330	broad.mit.edu	37	2	197664281	197664281	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:197664281C>G	uc002uts.2	-	1	145	c.55G>C	c.(55-57)GAG>CAG	p.E19Q	GTF3C3_uc010zgu.1_Missense_Mutation_p.E19Q|GTF3C3_uc002utu.2_Missense_Mutation_p.E19Q	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	19						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						TCGAACTCCTCAAAGGAGATT	0.527		NaN											0	0	0	0.012319	0	13	91									
SF3B1	23451	broad.mit.edu	37	2	198263234	198263234	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:198263234C>T	uc002uue.2	-	21	3133	c.3085G>A	c.(3085-3087)GAA>AAA	p.E1029K		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	1029	HEAT 8.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TGTACTTTTTCATGTCTGTTC	0.343		NaN											0	0	0	0.002299	0	17	94									
FZD7	8324	broad.mit.edu	37	2	202900897	202900897	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:202900897G>C	uc002uyw.1	+	1	1588	c.1527G>C	c.(1525-1527)AAG>AAC	p.K509N		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	509	Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						AGACGTGCAAGAGCTATGCCG	0.627		NaN									OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00333	0	20	125									
NBEAL1	65065	broad.mit.edu	37	2	204078320	204078320	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:204078320C>G	uc002uzt.3	+	54	8260	c.7927C>G	c.(7927-7929)CTT>GTT	p.L2643V	NBEAL1_uc002uzs.3_Missense_Mutation_p.L1284V|NBEAL1_uc002uzu.2_Missense_Mutation_p.L138V	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2643							binding			ovary(1)|skin(1)	2						CAGCCATATTCTTGTAGGTTT	0.398		NaN											0	0	0	0.00874	0	30	115									
INO80D	54891	broad.mit.edu	37	2	206870253	206870253	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:206870253C>G	uc002vaz.3	-	11	2328	c.1923G>C	c.(1921-1923)AAG>AAC	p.K641N		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	641					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						GGTCTCCATTCTTCCCTGAGT	0.443		NaN											0	0	0	0.009096	0	4	21									
SMARCAL1	50485	broad.mit.edu	37	2	217300156	217300156	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:217300156C>T	uc002vgc.3	+	9	1911	c.1581C>T	c.(1579-1581)GTC>GTT	p.V527V	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Silent_p.V527V|SMARCAL1_uc010fvg.2_Silent_p.V527V	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	527	Helicase ATP-binding.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		TCAACATTGTCAGCTTTGACC	0.463		NaN							Schimke_Immuno-Osseous_Dysplasia				0	0	0	0.001984	0	6	60									
CCDC108	255101	broad.mit.edu	37	2	219896248	219896248	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:219896248C>T	uc002vjl.1	-	7	862	c.778G>A	c.(778-780)GAT>AAT	p.D260N	CCDC108_uc010fwa.1_5'Flank|CCDC108_uc010zkp.1_Missense_Mutation_p.D249N|CCDC108_uc010zkq.1_Missense_Mutation_p.D195N	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	260						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCAGTCGTATCTCCCACAGCA	0.627		NaN											0	0	0	0.00361	0	39	328									
ALPP	250	broad.mit.edu	37	2	233243989	233243989	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:233243989G>A	uc002vsq.2	+	3	438	c.273G>A	c.(271-273)CTG>CTA	p.L91L	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	91						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		AGATACCCCTGGCCATGGACC	0.552		NaN											0	0	0	0.004482	0	7	54									
GIGYF2	26058	broad.mit.edu	37	2	233599920	233599920	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:233599920A>G	uc002vti.3	+	5	350	c.13A>G	c.(13-15)ACG>GCG	p.T5A	GIGYF2_uc002vte.2_RNA|GIGYF2_uc002vtf.2_RNA|GIGYF2_uc010zmj.1_Missense_Mutation_p.T5A|GIGYF2_uc002vtg.2_Missense_Mutation_p.T5A|GIGYF2_uc002vtj.3_Missense_Mutation_p.T5A|GIGYF2_uc002vtk.3_Missense_Mutation_p.T5A|GIGYF2_uc002vth.3_Missense_Mutation_p.T5A|GIGYF2_uc002vtl.2_RNA|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	5					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GGCAGCGGAAACGCAGACACT	0.333		NaN											0	0	0	0.001984	0	4	29									
MLPH	79083	broad.mit.edu	37	2	238402155	238402155	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:238402155G>A	uc002vwt.2	+	2	313	c.86G>A	c.(85-87)CGA>CAA	p.R29Q	MLPH_uc002vws.2_Missense_Mutation_p.R29Q|MLPH_uc010fyt.1_Missense_Mutation_p.R29Q|MLPH_uc002vwu.2_Missense_Mutation_p.R29Q|MLPH_uc002vwv.2_Missense_Mutation_p.R29Q	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	29	RabBD.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		TTTGACCTCCGAAGGAAAGAA	0.542		NaN											0	0	0	0.00499	0	16	99									
GPC1	2817	broad.mit.edu	37	2	241398601	241398601	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:241398601C>T	uc002vyw.3	+	2	542	c.321C>T	c.(319-321)TTC>TTT	p.F107F	PP14571_uc002vyy.1_5'Flank	NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	107					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		TGCGCAGCTTCGATGGTGAGT	0.701		NaN											0	0	0	0.004482	0	7	28									
GAL3ST2	64090	broad.mit.edu	37	2	242743447	242743447	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:242743447C>T	uc002wcj.1	+	4	1194	c.1063C>T	c.(1063-1065)CGG>TGG	p.R355W		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	355	Lumenal (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTACAACCTCCGGCCGGGCCT	0.667		NaN											0	0	0	0.00308	0	5	11									
SOX12	6666	broad.mit.edu	37	20	306825	306825	+	Missense_Mutation	SNP	A	A	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:306825A>T	uc002wdh.2	+	1	587	c.257A>T	c.(256-258)AAG>ATG	p.K86M		NM_006943	NP_008874	O15370	SOX12_HUMAN	SRY (sex determining region Y)-box 12	86	HMG box.				cell fate commitment|spinal cord development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|transcription regulatory region sequence-specific DNA binding				0		all_cancers(10;0.000331)|Lung NSC(37;0.0496)|all_lung(30;0.0831)|all_epithelial(17;0.0868)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GACTCGGAGAAGATCCCGTTC	0.612		NaN											0	0	0	0.001168	0	4	37									
ANGPT4	51378	broad.mit.edu	37	20	853663	853663	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:853663G>T	uc002wei.2	-	9	1555	c.1452C>A	c.(1450-1452)TTC>TTA	p.F484L	ANGPT4_uc010zpn.1_3'UTR	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	484	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGGGGCCCTTGAAGTAGTGCC	0.577		NaN											1	0	5.50884e-06	0.001368	5.7299e-06	9	99									
UBOX5	22888	broad.mit.edu	37	20	3090835	3090835	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:3090835C>T	uc002whw.2	-	5	1713	c.1543G>A	c.(1543-1545)GAG>AAG	p.E515K	uc002whv.1_Intron|UBOX5_uc002whx.2_Missense_Mutation_p.E461K|UBOX5_uc002why.1_Silent_p.*513*	NM_014948	NP_055763	O94941	RNF37_HUMAN	U-box domain containing 5 isoform a	515	RING-type.					nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						CGTTGCTTCTCACCCAGGCAG	0.607		NaN											0	0	0	0.008871	0	17	215									
CENPB	1059	broad.mit.edu	37	20	3766965	3766965	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:3766965C>G	uc002wjk.2	-	1	373	c.166G>C	c.(166-168)GAG>CAG	p.E56Q	CDC25B_uc010zqk.1_5'Flank|CDC25B_uc010zql.1_5'Flank|CDC25B_uc010zqm.1_5'Flank	NM_001810	NP_001801	P07199	CENPB_HUMAN	centromere protein B	56					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|satellite DNA binding				0						TACTTGCGCTCCGACGCCAGG	0.642		NaN											0	0	0	0.008291	0	11	106									
MCM8	84515	broad.mit.edu	37	20	5939338	5939338	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:5939338C>G	uc002wmi.2	+	7	1132	c.755C>G	c.(754-756)CCT>CGT	p.P252R	MCM8_uc002wmj.2_Missense_Mutation_p.P252R|MCM8_uc002wmk.2_Missense_Mutation_p.P252R|MCM8_uc002wml.2_Missense_Mutation_p.P252R|MCM8_uc010gbp.2_Missense_Mutation_p.P252R	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	252					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						CAGAGCTTTCCTCTTCCAGAT	0.388		NaN											0	0	0	0.001168	0	4	33									
TMX4	56255	broad.mit.edu	37	20	7962990	7962990	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:7962990C>A	uc002wmx.1	-	8	1091	c.958G>T	c.(958-960)GGC>TGC	p.G320C		NM_021156	NP_066979	Q9H1E5	TMX4_HUMAN	thioredoxin-related transmembrane protein 4	320	Glu-rich.				cell redox homeostasis|electron transport chain|transport	integral to membrane					0						TCAGAGATGCCTTCTTCAGCC	0.562		NaN											1	0	2.23348e-06	0.004007	2.33059e-06	13	80									
SEL1L2	80343	broad.mit.edu	37	20	13830926	13830926	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:13830926G>T	uc010gcf.2	-	19	1940	c.1858C>A	c.(1858-1860)CAA>AAA	p.Q620K	SEL1L2_uc002woq.3_Missense_Mutation_p.Q481K|SEL1L2_uc010zrl.1_Missense_Mutation_p.Q507K|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	620	Extracellular (Potential).|Sel1-like 11.					integral to membrane	binding			ovary(2)	2						GGACTCGTTTGAGCAGCCATG	0.453		NaN											1	0	3.07112e-06	0.010729	3.20207e-06	10	74									
KIF16B	55614	broad.mit.edu	37	20	16359787	16359787	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:16359787C>T	uc002wpg.1	-	19	3018	c.2860G>A	c.(2860-2862)GAA>AAA	p.E954K	KIF16B_uc002wpe.1_Missense_Mutation_p.E336K|KIF16B_uc002wpf.1_Missense_Mutation_p.E336K|KIF16B_uc010gch.1_Missense_Mutation_p.E954K|KIF16B_uc010gci.1_Missense_Mutation_p.E954K|KIF16B_uc010gcj.1_Missense_Mutation_p.E965K	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	954	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						GCAAGCTGTTCTTCTTTTTCT	0.438		NaN											0	0	0	0.004482	0	6	80									
KIF16B	55614	broad.mit.edu	37	20	16359856	16359856	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:16359856G>A	uc002wpg.1	-	19	2949	c.2791C>T	c.(2791-2793)CTT>TTT	p.L931F	KIF16B_uc002wpe.1_Missense_Mutation_p.L313F|KIF16B_uc002wpf.1_Missense_Mutation_p.L313F|KIF16B_uc010gch.1_Missense_Mutation_p.L931F|KIF16B_uc010gci.1_Missense_Mutation_p.L931F|KIF16B_uc010gcj.1_Missense_Mutation_p.L942F	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	931	Glu-rich.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						CCTCTGTCAAGAATTTCAAAT	0.433		NaN											0	0	0	0.009096	0	4	58									
CSRP2BP	57325	broad.mit.edu	37	20	18167964	18167964	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:18167964C>T	uc002wqj.2	+	11	2832	c.2210C>T	c.(2209-2211)TCA>TTA	p.S737L	CSRP2BP_uc002wqk.2_Missense_Mutation_p.S609L|CSRP2BP_uc010zru.1_Missense_Mutation_p.S608L	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	737	N-acetyltransferase.				histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						CTTCACGTCTCAGCAAGCAAC	0.403		NaN											0	0	0	0.006122	0	14	134									
RALGAPA2	57186	broad.mit.edu	37	20	20621418	20621418	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:20621418G>A	uc002wrz.2	-	6	620	c.477C>T	c.(475-477)TTC>TTT	p.F159F	RALGAPA2_uc010zsg.1_5'UTR	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	159					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TGACTGCTGGGAAACCAGGCA	0.498		NaN											0	0	0	0.004482	0	7	58									
XRN2	22803	broad.mit.edu	37	20	21309207	21309207	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:21309207C>G	uc002wsf.1	+	4	421	c.326C>G	c.(325-327)GCT>GGT	p.A109G	XRN2_uc002wsg.1_Missense_Mutation_p.A33G|XRN2_uc010zsk.1_Missense_Mutation_p.A55G	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	109				A -> V (in Ref. 1; AAD55138/AAQ13577).	cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						GCACCACGTGCTAAAATGAAC	0.383		NaN											0	0	0	0.004672	0	3	23									
GINS1	9837	broad.mit.edu	37	20	25388508	25388508	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:25388508G>A	uc002wuv.1	+	1	186	c.52G>A	c.(52-54)GAA>AAA	p.E18K	GINS1_uc010zte.1_RNA	NM_021067	NP_066545	Q14691	PSF1_HUMAN	GINS complex subunit 1	18					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				ovary(1)|central_nervous_system(1)	2						TCGCGCGCCCGAAGGGCAACT	0.687		NaN											0	0	0	0.00245	0	9	53									
XKR7	343702	broad.mit.edu	37	20	30585240	30585240	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:30585240G>A	uc002wxe.2	+	3	1894	c.1720G>A	c.(1720-1722)GAG>AAG	p.E574K		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	574						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GGAGCTGCTGGAGTATGAGAC	0.617		NaN											0	0	0	0.006214	0	9	90									
HCK	3055	broad.mit.edu	37	20	30681792	30681792	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:30681792G>A	uc002wxh.2	+	11	1390	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	HCK_uc010gdy.2_Missense_Mutation_p.E386K|HCK_uc002wxi.2_Missense_Mutation_p.E385K	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	407	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCGGGTCATTGAGGACAACGA	0.552		NaN											0	0	0	0.012319	0	17	213									
ASXL1	171023	broad.mit.edu	37	20	31021257	31021257	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:31021257G>A	uc002wxs.2	+	11	1682	c.1256G>A	c.(1255-1257)AGA>AAA	p.R419K	ASXL1_uc010geb.2_Missense_Mutation_p.R310K	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	419					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						CTCCGAACCAGAGCCAGAAGG	0.517		NaN	F|N|Mis		MDS|CMML								0	0	0	0.010729	0	10	110									
C20orf185	359710	broad.mit.edu	37	20	31661410	31661410	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:31661410G>A	uc002wym.1	+	15	1430	c.1430G>A	c.(1429-1431)TGA>TAA	p.*477*		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	477					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GTGGCATCCTGAGGCTGAGAC	0.532		NaN											0	0	0	0.008871	0	16	187									
ZNF341	84905	broad.mit.edu	37	20	32354821	32354821	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:32354821C>T	uc002wzy.2	+	9	1407	c.1387C>T	c.(1387-1389)CAC>TAC	p.H463Y	ZNF341_uc002wzx.2_Missense_Mutation_p.H456Y|ZNF341_uc010geq.2_Missense_Mutation_p.H373Y|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	463	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCTCAAGTCTCACATGACCCA	0.562		NaN											0	0	0	0.00361	0	45	444									
EDEM2	55741	broad.mit.edu	37	20	33722577	33722577	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:33722577C>G	uc002xbo.2	-	6	766	c.666G>C	c.(664-666)TTG>TTC	p.L222F	EDEM2_uc010zuv.1_Missense_Mutation_p.L181F|EDEM2_uc010zus.1_5'UTR|EDEM2_uc002xbq.2_Missense_Mutation_p.L185F|EDEM2_uc010zut.1_Missense_Mutation_p.L181F|EDEM2_uc002xbp.2_Missense_Mutation_p.L70F|EDEM2_uc002xbn.2_Missense_Mutation_p.L70F|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Intron	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	222					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			AGAGGCGCATCAAAGCCACTC	0.577		NaN											0	0	0	0.008291	0	11	127									
FAM83C	128876	broad.mit.edu	37	20	33875386	33875386	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:33875386G>C	uc010zux.1	-	4	1314	c.1196C>G	c.(1195-1197)TCA>TGA	p.S399*	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Intron	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	399										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GTTAGGGTCTGACAGTTGGCG	0.627		NaN											0	0	0	0.000602	0	4	50									
SPAG4	6676	broad.mit.edu	37	20	34203963	34203963	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:34203963C>G	uc002xdb.1	+	1	155	c.38C>G	c.(37-39)TCG>TGG	p.S13W	SPAG4_uc010zvi.1_5'UTR	NM_003116	NP_003107	Q9NPE6	SPAG4_HUMAN	sperm associated antigen 4	13					spermatogenesis	cilium|flagellar axoneme|integral to membrane	structural molecule activity				0	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			GCCTCGTCCTCGCGCAAGCAC	0.677		NaN											0	0	0	0.010729	0	9	85									
CPNE1	8904	broad.mit.edu	37	20	34220496	34220496	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:34220496C>A	uc002xdf.2	-	5	615	c.252G>T	c.(250-252)AAG>AAT	p.K84N	CPNE1_uc002xdc.2_5'Flank|CPNE1_uc010zvj.1_Missense_Mutation_p.K89N|CPNE1_uc002xde.2_Missense_Mutation_p.K84N|CPNE1_uc002xdg.2_Missense_Mutation_p.K84N|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.K84N|CPNE1_uc002xdi.2_Missense_Mutation_p.K84N|CPNE1_uc002xdj.2_Missense_Mutation_p.K84N|CPNE1_uc002xdk.2_Missense_Mutation_p.K84N|CPNE1_uc002xdl.2_Missense_Mutation_p.K84N|CPNE1_uc002xdm.2_Missense_Mutation_p.K84N|CPNE1_uc010gfk.1_Missense_Mutation_p.K84N|CPNE1_uc002xdn.1_RNA|CPNE1_uc002xdo.1_RNA|CPNE1_uc002xdp.1_RNA	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	84	C2 1.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GCTCTGGCGTCTTGTTGTCTA	0.512		NaN											1	0	2.47316e-13	0.003271	2.63804e-13	26	188									
PHF20	51230	broad.mit.edu	37	20	34459608	34459608	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:34459608C>T	uc002xek.1	+	9	1250	c.1139C>T	c.(1138-1140)TCA>TTA	p.S380L	PHF20_uc002xei.1_Missense_Mutation_p.S380L|PHF20_uc010gfo.1_Missense_Mutation_p.S380L|PHF20_uc002xej.1_Missense_Mutation_p.S264L	NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	380					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GGCCAGGTCTCATCTGCACTG	0.458		NaN											0	0	0	0.00623	0	31	209									
RPRD1B	58490	broad.mit.edu	37	20	36662405	36662405	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:36662405C>G	uc002xho.3	+	1	458	c.56C>G	c.(55-57)TCT>TGT	p.S19C	KIAA0406_uc002xhl.2_5'Flank|KIAA0406_uc002xhm.2_5'Flank	NM_021215	NP_067038	Q9NQG5	RPR1B_HUMAN	Regulation of nuclear pre-mRNA domain containing	19	CID.									pancreas(1)	1						CTGAGCAACTCTCAGCAGAGC	0.657		NaN											0	0	0	0.003954	0	25	160									
SLC32A1	140679	broad.mit.edu	37	20	37353686	37353686	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:37353686G>A	uc002xjc.2	+	1	582	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	107	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	AGGTGGTGGCGAATTCGGGGG	0.652		NaN											0	0	0	0.004656	0	18	185									
CHD6	84181	broad.mit.edu	37	20	40079711	40079711	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:40079711C>T	uc002xka.1	-	23	3736	c.3558G>A	c.(3556-3558)GGG>GGA	p.G1186G		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1186					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TCGTCTTCTTCCCCTTCCTCC	0.517		NaN											0	0	0	0.00499	0	15	136									
TTPAL	79183	broad.mit.edu	37	20	43113071	43113071	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:43113071G>A	uc002xmc.1	+	4	664	c.540G>A	c.(538-540)GTG>GTA	p.V180V	TTPAL_uc002xmd.1_Silent_p.V180V|TTPAL_uc010ggr.1_Intron	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like	180	CRAL-TRIO.					intracellular	transporter activity			breast(1)	1						AAACCCAGGTGAATGGAATTG	0.403		NaN											0	0	0	0.001984	0	6	89									
SERINC3	10955	broad.mit.edu	37	20	43132467	43132467	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:43132467G>A	uc002xme.2	-	8	1178	c.1044C>T	c.(1042-1044)CTC>CTT	p.L348L	SERINC3_uc002xmf.1_Silent_p.L348L|SERINC3_uc010ggs.1_Silent_p.L341L|SERINC3_uc010zwp.1_Silent_p.L293L	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	348	Helical; (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			TAGAATACAAGAGGCAGAGAA	0.378		NaN											0	0	0	0.001168	0	4	61									
STK4	6789	broad.mit.edu	37	20	43610474	43610474	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:43610474C>T	uc002xnb.2	+	4	340	c.250C>T	c.(250-252)CAT>TAT	p.H84Y	STK4_uc010ggx.2_Missense_Mutation_p.H84Y|STK4_uc010ggy.2_Missense_Mutation_p.H84Y|STK4_uc010ggw.1_Missense_Mutation_p.H84Y	NM_006282	NP_006273	Q13043	STK4_HUMAN	serine/threonine kinase 4	84	Protein kinase.				apoptosis|cell morphogenesis|hippo signaling cascade|intracellular protein kinase cascade|negative regulation of canonical Wnt receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of apoptosis|protein autophosphorylation	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein homodimerization activity|protein serine/threonine kinase activator activity|protein serine/threonine kinase activity|transcription factor binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				CTCTAGCCCTCATGTAGTCAA	0.348		NaN											0	0	0	0.00308	0	7	43									
MATN4	8785	broad.mit.edu	37	20	43933126	43933126	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:43933126C>T	uc002xnn.2	-	3	572	c.385G>A	c.(385-387)GAG>AAG	p.E129K	MATN4_uc002xno.2_Missense_Mutation_p.E129K|MATN4_uc002xnp.2_Missense_Mutation_p.E129K|MATN4_uc010zwr.1_Missense_Mutation_p.E77K|MATN4_uc002xnr.1_Missense_Mutation_p.E129K|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	129	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				CGCGCGCCCTCGGCCACACTG	0.711		NaN											0	0	0	0.000602	0	4	17									
PIGT	51604	broad.mit.edu	37	20	44053141	44053141	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:44053141C>G	uc002xoh.1	+	11	1479	c.1406C>G	c.(1405-1407)TCT>TGT	p.S469C	PIGT_uc002xoj.1_Missense_Mutation_p.S402C|PIGT_uc002xok.1_Missense_Mutation_p.S434C|PIGT_uc010zwu.1_Missense_Mutation_p.S207C|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Missense_Mutation_p.S207C|PIGT_uc010zww.1_Missense_Mutation_p.S413C|PIGT_uc010zwx.1_Missense_Mutation_p.S304C|PIGT_uc010zwy.1_Missense_Mutation_p.S367C|PIGT_uc010zwz.1_Missense_Mutation_p.S207C|PIGT_uc010zxa.1_Missense_Mutation_p.S307C|PIGT_uc002xol.1_Missense_Mutation_p.S258C|PIGT_uc010zxb.1_Missense_Mutation_p.S145C|PIGT_uc002xom.1_Missense_Mutation_p.S61C	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	469	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				TGTAGCCCATCTGTCCTCAGC	0.582		NaN											0	0	0	0.00632	0	23	136									
SLC12A5	57468	broad.mit.edu	37	20	44671954	44671954	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:44671954C>T	uc010zxl.1	+	9	1374	c.1298C>T	c.(1297-1299)TCA>TTA	p.S433L	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.S410L	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	433	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TACTTCCCCTCAGTCACAGGT	0.517		NaN											0	0	0	0.00361	0	43	385									
SLC12A5	57468	broad.mit.edu	37	20	44682304	44682304	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:44682304C>G	uc010zxl.1	+	20	2780	c.2704C>G	c.(2704-2706)CTG>GTG	p.L902V	SLC12A5_uc002xrb.2_Missense_Mutation_p.L879V	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	902	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GACCACATTTCTGTATCATTT	0.552		NaN											0	0	0	0.008361	0	24	267									
ELMO2	63916	broad.mit.edu	37	20	45012097	45012097	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:45012097C>T	uc002xrt.1	-	10	924	c.714G>A	c.(712-714)CTG>CTA	p.L238L	ELMO2_uc002xrs.1_5'Flank|ELMO2_uc002xru.1_Silent_p.L238L|ELMO2_uc010zxr.1_Silent_p.L238L|ELMO2_uc010zxs.1_Silent_p.L55L|ELMO2_uc002xrw.2_Silent_p.L55L|ELMO2_uc002xrx.1_Silent_p.L238L	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	238					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GTGCATTAATCAGTGCAATGG	0.458		NaN											0	0	0	0.001368	0	10	104									
ARFGEF2	10564	broad.mit.edu	37	20	47641868	47641868	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:47641868G>C	uc002xtx.3	+	36	4926	c.4774G>C	c.(4774-4776)GAT>CAT	p.D1592H	ARFGEF2_uc010zyf.1_Missense_Mutation_p.D885H	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1592					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GCTGGATGCAGATATCCACAT	0.478		NaN											0	0	0	0.009096	0	3	22									
RNF114	55905	broad.mit.edu	37	20	48562721	48562721	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:48562721G>A	uc002xux.2	+	4	483	c.447G>A	c.(445-447)AAG>AAA	p.K149K	RNF114_uc010zyo.1_Silent_p.K149K|RNF114_uc002xuy.2_RNA	NM_018683	NP_061153	Q9Y508	RN114_HUMAN	zinc finger protein 313	149					cell differentiation|multicellular organismal development|spermatogenesis	intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						GTCCTGAGAAGAACTTTGATC	0.368		NaN											0	0	0	0.010729	0	6	69									
NFATC2	4773	broad.mit.edu	37	20	50051746	50051746	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:50051746G>A	uc002xwd.2	-	8	2231	c.2011C>T	c.(2011-2013)CAG>TAG	p.Q671*	NFATC2_uc002xwc.2_Nonsense_Mutation_p.Q671*|NFATC2_uc010zyv.1_Nonsense_Mutation_p.Q452*|NFATC2_uc010zyw.1_Nonsense_Mutation_p.Q452*|NFATC2_uc010zyx.1_Nonsense_Mutation_p.Q651*|NFATC2_uc010zyy.1_Nonsense_Mutation_p.Q452*|NFATC2_uc010zyz.1_Nonsense_Mutation_p.Q452*|NFATC2_uc002xwe.2_Nonsense_Mutation_p.Q651*	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	671					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					GTAAAGTGCTGAGGCTGACTT	0.338		NaN											0	0	0	0.004656	0	18	175									
TSHZ2	128553	broad.mit.edu	37	20	51873094	51873094	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:51873094G>C	uc002xwo.2	+	2	4053	c.3097G>C	c.(3097-3099)GAA>CAA	p.E1033Q		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	1033					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGACGTGGATGAAGAATAGCT	0.493		NaN											0	0	0	0.004656	0	20	249									
CASS4	57091	broad.mit.edu	37	20	55033555	55033555	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:55033555C>T	uc002xxp.2	+	7	2338	c.2113C>T	c.(2113-2115)CAG>TAG	p.Q705*	CASS4_uc002xxr.2_Nonsense_Mutation_p.Q705*|CASS4_uc010zze.1_Nonsense_Mutation_p.Q651*|CASS4_uc010gio.2_Nonsense_Mutation_p.Q268*	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	705					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						GATCATCACTCAGAGCAAGCT	0.597		NaN											0	0	0	0.010818	0	27	210									
RAE1	8480	broad.mit.edu	37	20	55949817	55949817	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:55949817G>A	uc002xyg.2	+	11	1321	c.980G>A	c.(979-981)GGA>GAA	p.G327E	RAE1_uc010gis.1_Missense_Mutation_p.G280E|RAE1_uc010git.1_Missense_Mutation_p.G327E|RAE1_uc002xyh.2_Missense_Mutation_p.G327E|RAE1_uc002xyi.2_Missense_Mutation_p.G327E	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	327					carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			AATCACAATGGAAACATATTT	0.433		NaN											0	0	0	0.001168	0	5	95									
GNAS	2778	broad.mit.edu	37	20	57429312	57429312	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:57429312C>T	uc002xzw.2	+	1	1277	c.992C>T	c.(991-993)GCG>GTG	p.A331V	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CCCCCAATCGCGCTTGACGGC	0.647		NaN	Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			0	0	0	0.004482	0	6	47									
CDH4	1002	broad.mit.edu	37	20	60448856	60448856	+	Missense_Mutation	SNP	G	G	A	rs147810745	by1000genomes	TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:60448856G>A	uc002ybn.1	+	7	964	c.950G>A	c.(949-951)CGG>CAG	p.R317Q	CDH4_uc002ybp.1_Missense_Mutation_p.R243Q	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	317	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GTGCGGTACCGGATCGTGACC	0.612		NaN											0	0	0	0.003755	0	31	295									
GTPBP5	26164	broad.mit.edu	37	20	60768599	60768599	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:60768599C>T	uc002yce.3	+	2	161	c.123C>T	c.(121-123)CCC>CCT	p.P41P	GTPBP5_uc011aab.1_Intron|GTPBP5_uc011aac.1_Intron|GTPBP5_uc011aad.1_5'UTR|GTPBP5_uc011aae.1_Intron|GTPBP5_uc011aaf.1_Silent_p.P41P|GTPBP5_uc011aag.1_Silent_p.P41P	NM_015666	NP_056481	Q9H4K7	GTPB5_HUMAN	GTP binding protein 5	41	Localized in the mitocondria.|Not localized in the mitocondria.				ribosome biogenesis	mitochondrion	GTP binding|GTPase activity|magnesium ion binding				0	Breast(26;3.52e-09)		BRCA - Breast invasive adenocarcinoma(19;2.5e-08)			GGGCTTCTCCCAGGCTGCTCT	0.617		NaN											0	0	0	0.001368	0	12	81									
SLCO4A1	28231	broad.mit.edu	37	20	61300307	61300307	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:61300307C>T	uc002ydb.1	+	11	2107	c.1902C>T	c.(1900-1902)TTC>TTT	p.F634F	SLCO4A1_uc002ydc.1_RNA|LOC100127888_uc002ydd.2_5'Flank|SLCO4A1_uc002yde.1_Silent_p.F36F	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	634	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			CCATCGCCTTCGGCTGGGTGA	0.657		NaN									OREG0026115	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.001855	0	9	83									
SLCO4A1	28231	broad.mit.edu	37	20	61303163	61303163	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:61303163C>T	uc002ydb.1	+	12	2292	c.2087C>T	c.(2086-2088)TCA>TTA	p.S696L	SLCO4A1_uc002ydc.1_Intron|SLCO4A1_uc002yde.1_Missense_Mutation_p.S98L	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	696	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			TCGGAGTCTTCAGATGGCCTG	0.632		NaN											0	0	0	0.00499	0	17	118									
DIDO1	11083	broad.mit.edu	37	20	61512150	61512150	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:61512150C>T	uc002ydr.1	-	16	5422	c.5158G>A	c.(5158-5160)GAG>AAG	p.E1720K	DIDO1_uc002yds.1_Missense_Mutation_p.E1720K	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1720					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTGTCCCCCTCTGTTTCACCT	0.647		NaN											0	0	0	0.007291	0	20	241									
RTEL1	51750	broad.mit.edu	37	20	62324221	62324221	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:62324221G>C	uc002yfu.1	+	29	3059	c.2716G>C	c.(2716-2718)GAG>CAG	p.E906Q	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Missense_Mutation_p.E906Q|RTEL1_uc011abd.1_Missense_Mutation_p.E930Q|RTEL1_uc011abe.1_Missense_Mutation_p.E683Q|RTEL1_uc002yfw.2_RNA|RTEL1_uc002yfx.1_Missense_Mutation_p.E151Q|TNFRSF6B_uc002yfy.2_5'Flank	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	906					DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CGTGAAGCAGGAGTTGAGCCA	0.652		NaN											0	0	0	0.007413	0	18	193									
ZBTB46	140685	broad.mit.edu	37	20	62421337	62421337	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:62421337C>T	uc002ygv.1	-	2	975	c.774G>A	c.(772-774)CAG>CAA	p.Q258Q	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	258					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CACCAGCACTCTGCTCTGAGA	0.577		NaN											0	0	0	0.00245	0	11	85									
SOX18	54345	broad.mit.edu	37	20	62680557	62680557	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:62680557G>C	uc002yhs.2	-	1	423	c.313C>G	c.(313-315)CAG>GAG	p.Q105E		NM_018419	NP_060889	P35713	SOX18_HUMAN	SRY-box 18	105	HMG box.				angiogenesis|blood vessel endothelial cell migration|endocardial cell differentiation|endocardium formation|establishment of endothelial barrier|heart looping|lymphangiogenesis|lymphatic endothelial cell differentiation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|positive regulation of transcription from RNA polymerase II promoter|vasculogenesis	nucleus	transcription regulatory region DNA binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					GGGTTCTGCTGAGCCAGCCGC	0.493		NaN											0	0	0	0.006122	0	13	148									
PCMTD2	55251	broad.mit.edu	37	20	62891502	62891502	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr20:62891502C>G	uc002yil.3	+	2	384	c.184C>G	c.(184-186)CAC>GAC	p.H62D	PCMTD2_uc002yim.3_Missense_Mutation_p.H62D	NM_018257	NP_060727	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate)	62						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					TGGAAACATTCACCTCTCAGC	0.483		NaN											0	0	0	0.001368	0	12	107									
N6AMT1	29104	broad.mit.edu	37	21	30257552	30257552	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:30257552G>A	uc002ymo.1	-	1	142	c.116C>T	c.(115-117)GCG>GTG	p.A39V	N6AMT1_uc002ymp.1_Missense_Mutation_p.A39V|N6AMT1_uc002ymq.1_RNA	NM_013240	NP_037372	Q9Y5N5	HEMK2_HUMAN	N-6 adenine-specific DNA methyltransferase 1	39					positive regulation of cell growth	protein complex	nucleic acid binding|protein binding|protein methyltransferase activity				0						TTCGGCAGCCGCTGCCTCCAG	0.667		NaN											0	0	0	0.011902	0	16	266									
SFRS15	57466	broad.mit.edu	37	21	33057990	33057990	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:33057990G>C	uc002ypd.2	-	17	2526	c.2100C>G	c.(2098-2100)TTC>TTG	p.F700L	SFRS15_uc002ype.2_Missense_Mutation_p.F700L|SFRS15_uc010glu.2_Missense_Mutation_p.F685L|SFRS15_uc002ypf.1_Missense_Mutation_p.F374L	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	700						nucleus	nucleotide binding|RNA binding				0						GAGGAGGCGTGAAAGCAGGCG	0.537		NaN											0	0	0	0.004007	0	13	93									
IL10RB	3588	broad.mit.edu	37	21	34655402	34655402	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:34655402C>G	uc002yrk.1	+	5	601	c.502C>G	c.(502-504)CAA>GAA	p.Q168E	IL10RB_uc002yrh.1_Missense_Mutation_p.Q238E|IL10RB_uc002yri.1_Missense_Mutation_p.Q121E|IL10RB_uc002yrl.1_Missense_Mutation_p.Q170E	NM_000628	NP_000619	Q08334	I10R2_HUMAN	interleukin 10 receptor, beta precursor	168	Fibronectin type-III.|Extracellular (Potential).				immune response|inflammatory response	interleukin-28 receptor complex	protein binding|receptor activity				0						TTACTAGTTTCAAATTACTCC	0.398		NaN											0	0	0	0.00308	0	7	52									
DOPEY2	9980	broad.mit.edu	37	21	37617864	37617864	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:37617864G>A	uc002yvg.2	+	19	3665	c.3586G>A	c.(3586-3588)GAG>AAG	p.E1196K	DOPEY2_uc011aeb.1_Missense_Mutation_p.E1145K|DOPEY2_uc002yvh.2_Missense_Mutation_p.E47K	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1196					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CTCCAGCGACGAGGAGGCGGA	0.617		NaN											0	0	0	0.007413	0	18	47									
HLCS	3141	broad.mit.edu	37	21	38126565	38126565	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:38126565G>A	uc010gnb.2	-	11	3364	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I	HLCS_uc002yvs.2_Silent_p.I721I	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	721					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	GTTTGGGGAGGATGAGGTTTC	0.577		NaN											0	0	0	0.001368	0	9	66									
HLCS	3141	broad.mit.edu	37	21	38309074	38309074	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:38309074G>C	uc010gnb.2	-	4	1872	c.671C>G	c.(670-672)TCC>TGC	p.S224C	HLCS_uc002yvs.2_Missense_Mutation_p.S224C|HLCS_uc010gnc.1_Missense_Mutation_p.S371C	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	224					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	TTCGGGAATGGACTCCCTGGT	0.522		NaN											0	0	0	0.003271	0	31	83									
TTC3	7267	broad.mit.edu	37	21	38461129	38461129	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:38461129G>A	uc002yvz.2	+	5	474	c.369G>A	c.(367-369)AAG>AAA	p.K123K	TTC3_uc011aee.1_Intron|TTC3_uc002ywa.2_Silent_p.K123K|TTC3_uc002ywb.2_Silent_p.K123K|TTC3_uc010gnf.2_5'UTR|TTC3_uc011aed.1_Intron|TTC3_uc010gne.1_Silent_p.K123K	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	123					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TAAATTTGAAGAAACTACAAC	0.323		NaN											0	0	0	0.004482	0	7	36									
DSCAM	1826	broad.mit.edu	37	21	41457556	41457556	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:41457556C>T	uc002yyq.1	-	23	4557	c.4105G>A	c.(4105-4107)GAA>AAA	p.E1369K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1369	Extracellular (Potential).|Ig-like C2-type 10.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AAAATAATTTCATCAGATCCC	0.378		NaN											0	0	0	0.010504	0	15	68									
UMODL1	89766	broad.mit.edu	37	21	43557560	43557560	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:43557560C>A	uc002zaf.1	+	22	3787	c.3787C>A	c.(3787-3789)CAT>AAT	p.H1263N	UMODL1_uc002zad.1_Missense_Mutation_p.H1191N|UMODL1_uc002zae.1_Missense_Mutation_p.H1319N|UMODL1_uc002zag.1_Missense_Mutation_p.H1391N|UMODL1_uc002zal.1_Missense_Mutation_p.H213N|UMODL1_uc010gpa.1_RNA	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1263	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGAGCCTCCTCATGCAGAAGC	0.607		NaN											1	0	1.59361e-14	0.006999	1.70546e-14	33	277									
ABCG1	9619	broad.mit.edu	37	21	43704787	43704787	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:43704787C>T	uc002zaq.2	+	7	958	c.852C>T	c.(850-852)TTC>TTT	p.F284F	ABCG1_uc002zan.2_Silent_p.F286F|ABCG1_uc002zam.2_Silent_p.F262F|ABCG1_uc002zao.2_Silent_p.F281F|ABCG1_uc002zap.2_Silent_p.F284F|ABCG1_uc002zar.2_Silent_p.F295F|ABCG1_uc011aev.1_Silent_p.F295F|ABCG1_uc010gpb.1_5'Flank	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	284	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	TCGAGCTGTTCGACCAGGTAC	0.612		NaN											0	0	0	0.00361	0	42	221									
NDUFV3	4731	broad.mit.edu	37	21	44329053	44329053	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:44329053C>G	uc002zcn.2	+	3	315	c.249C>G	c.(247-249)ACC>ACG	p.T83T	NDUFV3_uc002zcm.2_Silent_p.T448T	NM_001001503	NP_001001503	P56181	NDUV3_HUMAN	NADH-ubiquinone oxidoreductase flavoprotein 3	83					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I|nucleus	NADH dehydrogenase (ubiquinone) activity			ovary(2)	2				STAD - Stomach adenocarcinoma(101;0.0606)	NADH(DB00157)	GCACGTACACCTTCTTAGACC	0.557		NaN											0	0	0	0.009535	0	28	360									
RRP1B	23076	broad.mit.edu	37	21	45096216	45096216	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:45096216G>T	uc002zdk.2	+	7	727	c.613G>T	c.(613-615)GAC>TAC	p.D205Y		NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	205					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		GAAGACGAAGGAGTAAGTGAT	0.473		NaN											1	0	1.67942e-08	0.006122	1.77097e-08	12	121									
RRP1B	23076	broad.mit.edu	37	21	45096684	45096684	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:45096684G>A	uc002zdk.2	+	8	799	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	229					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		TTTTGTGCCTGAAGAGACGAT	0.502		NaN											0	0	0	0.008291	0	8	95									
RRP1B	23076	broad.mit.edu	37	21	45096750	45096750	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:45096750G>C	uc002zdk.2	+	8	865	c.751G>C	c.(751-753)GAA>CAA	p.E251Q		NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	251					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		GGAGATACCTGAAAATGAGGT	0.453		NaN											0	0	0	0.00308	0	7	89									
ITGB2	3689	broad.mit.edu	37	21	46321536	46321536	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:46321536G>A	uc002zgd.2	-	5	656	c.612C>T	c.(610-612)TTC>TTT	p.F204F	ITGB2_uc002zge.2_Silent_p.F204F|ITGB2_uc002zgf.3_Silent_p.F204F|ITGB2_uc011afl.1_Silent_p.F126F|ITGB2_uc010gpw.2_Silent_p.F147F|ITGB2_uc002zgg.2_Silent_p.F204F	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	204	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GCACGTGCCTGAAGGCAAACG	0.587		NaN											0	0	0	0.012319	0	18	181									
COL18A1	80781	broad.mit.edu	37	21	46898256	46898256	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr21:46898256G>A	uc011afs.1	+	8	2503	c.2482G>A	c.(2482-2484)GAC>AAC	p.D828N	COL18A1_uc002zhg.2_Missense_Mutation_p.D413N|COL18A1_uc002zhi.2_Missense_Mutation_p.D593N	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	828	Triple-helical region 2 (COL2).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCCCGGTGAAGACGGAAAGCC	0.527		NaN									OREG0026262	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.001168	0	5	73									
BCL2L13	23786	broad.mit.edu	37	22	18209803	18209803	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:18209803G>A	uc002zmw.2	+	7	1179	c.961G>A	c.(961-963)GAG>AAG	p.E321K	BCL2L13_uc002zmx.2_Missense_Mutation_p.E159K|BCL2L13_uc002zmy.2_3'UTR|BCL2L13_uc010gqy.2_Missense_Mutation_p.E159K|BCL2L13_uc011agk.1_Missense_Mutation_p.E197K|BCL2L13_uc010gqz.2_Missense_Mutation_p.E41K|BCL2L13_uc002zmz.2_Missense_Mutation_p.E159K|BCL2L13_uc002zna.2_Missense_Mutation_p.E41K	NM_015367	NP_056182	Q9BXK5	B2L13_HUMAN	BCL2-like 13 (apoptosis facilitator)	321	Glu-rich.				induction of apoptosis	integral to membrane|mitochondrial membrane|nucleus	caspase activator activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4		all_epithelial(15;0.123)		Lung(27;0.199)		GGGCATGGAAGAGGCTGCTGT	0.557		NaN											0	0	0	0.00308	0	5	36									
MICAL3	57553	broad.mit.edu	37	22	18324667	18324667	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:18324667C>T	uc002zng.3	-	20	3075	c.2722G>A	c.(2722-2724)GAG>AAG	p.E908K	MICAL3_uc011agl.1_Missense_Mutation_p.E908K|MICAL3_uc002znh.2_Missense_Mutation_p.E908K|MICAL3_uc002znj.1_Missense_Mutation_p.E636K|MICAL3_uc002znk.1_Missense_Mutation_p.E908K|MICAL3_uc002znl.1_Missense_Mutation_p.E541K	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	908	Glu-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TCCGGTACCTCCTGCAGTGCC	0.682		NaN											0	0	0	0.009096	0	3	15									
TRMT2A	27037	broad.mit.edu	37	22	20102529	20102529	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:20102529G>A	uc002zrk.1	-	6	1179	c.964C>T	c.(964-966)CGC>TGC	p.R322C	TRMT2A_uc002zrl.1_Missense_Mutation_p.R322C|TRMT2A_uc002zrm.1_Missense_Mutation_p.R144C|TRMT2A_uc002zrn.1_Missense_Mutation_p.R322C|RANBP1_uc011ahl.1_5'Flank|RANBP1_uc002zro.1_5'Flank|RANBP1_uc002zrp.2_5'Flank	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C	322					RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						TGGTGGCGGCGGCTGGTGCGC	0.652		NaN											0	0	0	0.004672	0	3	21									
CRKL	1399	broad.mit.edu	37	22	21272303	21272303	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:21272303G>A	uc002ztf.2	+	1	590	c.81G>A	c.(79-81)CGG>CGA	p.R27R	CRKL_uc002ztg.1_RNA	NM_005207	NP_005198	P46109	CRKL_HUMAN	v-crk sarcoma virus CT10 oncogene homolog	27	SH2.				JNK cascade|Ras protein signal transduction	cytosol	protein tyrosine kinase activity|SH3/SH2 adaptor activity|signal transducer activity				0	all_cancers(11;1.16e-25)|all_epithelial(7;3.37e-24)|Lung NSC(8;7.25e-16)|all_lung(8;1.37e-14)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.176)			CGCAGACCCGGCTCCAGGGCC	0.662		NaN											0	0	0	0.007413	0	15	64									
TOP3B	8940	broad.mit.edu	37	22	22330076	22330076	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:22330076C>T	uc002zvs.2	-	2	441	c.6G>A	c.(4-6)AAG>AAA	p.K2K	TOP3B_uc010gtl.2_Silent_p.K2K|TOP3B_uc002zvt.3_Silent_p.K2K	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	2					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		TGAGCACAGTCTTCATTTTGT	0.493		NaN											0	0	0	0.000602	0	5	45									
RTDR1	27156	broad.mit.edu	37	22	23482428	23482428	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:23482428G>C	uc002zwt.2	-	2	338	c.180C>G	c.(178-180)ATC>ATG	p.I60M	RTDR1_uc010gtv.1_Missense_Mutation_p.I60M	NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	60							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		TGGCCTTGTAGATACACTCGG	0.557		NaN											0	0	0	0.00308	0	6	53									
SUSD2	56241	broad.mit.edu	37	22	24579478	24579478	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:24579478C>G	uc002zzn.1	+	3	347	c.303C>G	c.(301-303)ATC>ATG	p.I101M		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	101	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AGGACAGCATCCAGACCCTCG	0.627		NaN											0	0	0	0.007835	0	30	256									
SUSD2	56241	broad.mit.edu	37	22	24579487	24579487	+	Silent	SNP	C	C	A	rs143350390	byFrequency	TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:24579487C>A	uc002zzn.1	+	3	356	c.312C>A	c.(310-312)CTC>CTA	p.L104L		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	104	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TCCAGACCCTCGGCCATGTGG	0.627		NaN											1	0	2.52637e-11	0.005524	2.68375e-11	30	264									
SUSD2	56241	broad.mit.edu	37	22	24581693	24581693	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:24581693G>A	uc002zzn.1	+	8	1179	c.1135G>A	c.(1135-1137)GAC>AAC	p.D379N		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	379	AMOP.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCTGACAGCTGACTCCAGCGG	0.687		NaN											0	0	0	0.001368	0	11	40									
TPST2	8459	broad.mit.edu	37	22	26932283	26932283	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:26932283C>T	uc003acv.2	-	3	1180	c.1012G>A	c.(1012-1014)GAC>AAC	p.D338N	TPST2_uc003acw.2_Missense_Mutation_p.D338N|TPST2_uc003acx.2_Missense_Mutation_p.D338N	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	338	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						ACGAAGGGGTCAGGGTTGCCA	0.572		NaN											0	0	0	0.006214	0	7	73									
GAS2L1	10634	broad.mit.edu	37	22	29706489	29706489	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:29706489G>A	uc003afa.1	+	3	893	c.694G>A	c.(694-696)GAG>AAG	p.E232K	GAS2L1_uc010gvm.1_Missense_Mutation_p.E232K|GAS2L1_uc003afb.1_Missense_Mutation_p.E232K|GAS2L1_uc003afc.1_Missense_Mutation_p.E232K|GAS2L1_uc003afd.1_Missense_Mutation_p.E232K|GAS2L1_uc003afe.1_Missense_Mutation_p.E232K	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	232	GAR.				cell cycle arrest	cytoplasm|cytoskeleton					0						CAAGGTCTCAGAGGGGAAGTA	0.647		NaN											0	0	0	0.00333	0	19	120									
AP1B1	162	broad.mit.edu	37	22	29737585	29737585	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:29737585G>A	uc003afj.2	-	13	1885	c.1701C>T	c.(1699-1701)ATC>ATT	p.I567I	AP1B1_uc003afi.2_Silent_p.I567I|AP1B1_uc003afk.2_Silent_p.I567I|AP1B1_uc003afl.2_Silent_p.I567I|AP1B1_uc011ako.1_Silent_p.I120I	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	567					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						CCAGCGTGCCGATGTAGCAGA	0.617		NaN											0	0	0	0.00278	0	17	109									
SF3A1	10291	broad.mit.edu	37	22	30730592	30730592	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:30730592C>T	uc003ahl.2	-	16	2505	c.2373G>A	c.(2371-2373)AGG>AGA	p.R791R		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	791	Ubiquitin-like.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						TCTACTTCTTCCTCCCGCCTC	0.562		NaN											0	0	0	0.00333	0	20	158									
TCN2	6948	broad.mit.edu	37	22	31019015	31019015	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:31019015C>T	uc003aip.1	+	8	1325	c.1167C>T	c.(1165-1167)GCC>GCT	p.A389A	TCN2_uc003aiq.1_Silent_p.A385A|TCN2_uc003air.1_Silent_p.A362A	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	389					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGAAAGCGGCCGGAGAAAGGG	0.562		NaN											0	0	0	0.010729	0	9	96									
APOL4	80832	broad.mit.edu	37	22	36587672	36587672	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:36587672C>T	uc003aox.2	-	6	732	c.507G>A	c.(505-507)CTG>CTA	p.L169L	APOL4_uc003aow.2_Silent_p.L166L|APOL4_uc010gww.2_Silent_p.L11L	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	169					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						CAGTAATGCTCAGGCTCAGCC	0.562		NaN											0	0	0	0.000602	0	5	16									
APOL2	23780	broad.mit.edu	37	22	36623580	36623580	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:36623580G>C	uc003aoz.2	-	5	1220	c.884C>G	c.(883-885)TCA>TGA	p.S295*	APOL2_uc011amm.1_Nonsense_Mutation_p.S407*|APOL2_uc003apa.2_Nonsense_Mutation_p.S295*	NM_030882	NP_112092	Q9BQE5	APOL2_HUMAN	apolipoprotein L2	295					acute-phase response|cholesterol metabolic process|lipid transport|lipoprotein metabolic process|maternal process involved in female pregnancy|multicellular organismal development	endoplasmic reticulum membrane|extracellular region	high-density lipoprotein particle binding|lipid binding|receptor binding				0						CAAGTGCTTTGACTCATATGC	0.562		NaN											0	0	0	0.00623	0	29	171									
APOL2	23780	broad.mit.edu	37	22	36624083	36624084	+	Missense_Mutation	DNP	AG	AG	TA			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:36624083_36624084AG>TA	uc003aoz.2	-	5	716_717	c.380_381CT>TA	c.(379-381)TCT>TTA	p.S127L	APOL2_uc011amm.1_Missense_Mutation_p.S239L|APOL2_uc003apa.2_Missense_Mutation_p.S127L	NM_030882	NP_112092	Q9BQE5	APOL2_HUMAN	apolipoprotein L2	127					acute-phase response|cholesterol metabolic process|lipid transport|lipoprotein metabolic process|maternal process involved in female pregnancy|multicellular organismal development	endoplasmic reticulum membrane|extracellular region	high-density lipoprotein particle binding|lipid binding|receptor binding				0						TCAGGATGCCAGAGGTAGTGCC	0.574		NaN											0	0	0	0.004672	0	14	57									
APOL1	8542	broad.mit.edu	37	22	36661542	36661542	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:36661542G>C	uc003apf.2	+	6	828	c.660G>C	c.(658-660)TTG>TTC	p.L220F	APOL1_uc011amn.1_Missense_Mutation_p.L97F|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Missense_Mutation_p.L236F|APOL1_uc011amo.1_Missense_Mutation_p.L97F|APOL1_uc011amp.1_Missense_Mutation_p.L220F|APOL1_uc011amq.1_Missense_Mutation_p.L202F|APOL1_uc010gwx.2_Missense_Mutation_p.L97F	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	220					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						CAGCCGCTTTGACCGGGATTA	0.557		NaN											0	0	0	0.008871	0	18	126									
MYH9	4627	broad.mit.edu	37	22	36698620	36698620	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:36698620G>A	uc003apg.2	-	20	2724	c.2493C>T	c.(2491-2493)TTC>TTT	p.F831F	MYH9_uc003aph.1_Silent_p.F695F	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	831					actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GCACCTTGGTGAAGAGCCGCC	0.373		NaN	T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				0	0	0	0.010818	0	23	127									
APOBEC3B	9582	broad.mit.edu	37	22	39387537	39387537	+	Silent	SNP	C	C	T	rs144471703		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:39387537C>T	uc003awo.1	+	6	978	c.924C>T	c.(922-924)TTC>TTT	p.F308F	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Silent_p.F283F|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	308					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					TGCGCATCTTCGCTGCCCGCA	0.572		NaN											0	0	0	0.00623	0	32	173									
EP300	2033	broad.mit.edu	37	22	41562613	41562613	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:41562613G>A	uc003azl.3	+	23	4212	c.3817G>A	c.(3817-3819)GAT>AAT	p.D1273N		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1273					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						ATTCGTCTGTGATGGCTGTTT	0.254		NaN	T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				0	0	0	0.009096	0	3	18									
TCF20	6942	broad.mit.edu	37	22	42606365	42606365	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:42606365G>A	uc003bcj.1	-	1	5081	c.4947C>T	c.(4945-4947)ATC>ATT	p.I1649I	TCF20_uc003bck.1_Silent_p.I1649I|TCF20_uc003bnt.2_Silent_p.I1649I	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1649					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CAGCATTGATGATTGTACAAA	0.478		NaN											0	0	0	0.010771	0	34	146									
CELSR1	9620	broad.mit.edu	37	22	46930976	46930976	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:46930976C>T	uc003bhw.1	-	1	2092	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	698	Extracellular (Potential).|Cadherin 5.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GCCGCATCCTCATTCAGACGA	0.637		NaN											0	0	0	0.004482	0	8	45									
SBF1	6305	broad.mit.edu	37	22	50893737	50893737	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:50893737G>C	uc003blh.2	-	33	4665	c.4470C>G	c.(4468-4470)TTC>TTG	p.F1490L	SBF1_uc003ble.2_5'UTR|SBF1_uc003blf.2_5'UTR|SBF1_uc011arx.1_Missense_Mutation_p.F1128L	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1464	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CACGGTGGCTGAAGCGATGGC	0.642		NaN											0	0	0	0.003163	0	13	68									
ADM2	79924	broad.mit.edu	37	22	50921131	50921131	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:50921131C>T	uc003blj.2	+	2	511	c.246C>T	c.(244-246)CTC>CTT	p.L82L	ADM2_uc011ary.1_Silent_p.L82L	NM_024866	NP_079142	Q7Z4H4	ADM2_HUMAN	adrenomedullin 2 precursor	82					positive regulation of angiogenesis	extracellular region	hormone activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GTCAGCCTCTCCGGGATGGTG	0.716		NaN											0	0	0	0.001984	0	6	34									
CHKB	1120	broad.mit.edu	37	22	51017894	51017894	+	Silent	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:51017894G>T	uc003bms.2	-	10	1292	c.1074C>A	c.(1072-1074)ATC>ATA	p.I358I	CPT1B_uc003bmk.3_5'Flank|CPT1B_uc003bml.2_5'Flank|CPT1B_uc003bmm.2_5'Flank|CPT1B_uc003bmo.2_5'Flank|CPT1B_uc011asa.1_5'Flank|CPT1B_uc003bmn.2_5'Flank|CPT1B_uc011asb.1_5'Flank|CHKB-CPT1B_uc003bmp.2_5'UTR|CHKB-CPT1B_uc003bmt.1_Silent_p.I149I|CHKB-CPT1B_uc003bmu.2_Silent_p.I237I|CHKB_uc003bmv.2_Silent_p.I358I	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	358					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	ATGCCTGGAGGATGGACCACA	0.562		NaN											1	0	7.48243e-07	0.006214	7.82034e-07	6	45									
ATG7	10533	broad.mit.edu	37	3	11404346	11404346	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:11404346G>A	uc003bwc.2	+	15	1860	c.1743G>A	c.(1741-1743)GTG>GTA	p.V581V	ATG7_uc003bwd.2_Silent_p.V581V|ATG7_uc011aum.1_Silent_p.V542V	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	581					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						GACTGGCCGTGATTGCAGGAG	0.488		NaN											0	0	0	0.004482	0	8	73									
NUP210	23225	broad.mit.edu	37	3	13401905	13401905	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:13401905G>A	uc003bxv.1	-	15	2102	c.2019C>T	c.(2017-2019)CTC>CTT	p.L673L	NUP210_uc003bxx.2_Silent_p.L345L	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	673	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGGACGGCTCGAGGATCCAAG	0.562		NaN											0	0	0	0.00623	0	37	40									
SLC6A6	6533	broad.mit.edu	37	3	14509714	14509714	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:14509714G>A	uc010heg.2	+	16	1381	c.1090G>A	c.(1090-1092)GAG>AAG	p.E364K	SLC6A6_uc003byq.2_Missense_Mutation_p.E364K|SLC6A6_uc003byr.2_Intron	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	364					cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						TGATGTGGCTGAGTCAGGTAC	0.547		NaN									OREG0015421	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.000602	0	4	25									
COLQ	8292	broad.mit.edu	37	3	15512080	15512080	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:15512080C>T	uc003bzx.2	-	11	806	c.680G>A	c.(679-681)CGA>CAA	p.R227Q	COLQ_uc003bzv.2_Missense_Mutation_p.R217Q|COLQ_uc003bzz.2_Missense_Mutation_p.R218Q|COLQ_uc010heo.2_Missense_Mutation_p.R193Q|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Missense_Mutation_p.R86Q|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	227	Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						TGTGGGTCCTCGGTGTCCTGC	0.552		NaN											0	0	0	0.009535	0	24	83									
DPH3	285381	broad.mit.edu	37	3	16306335	16306335	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:16306335C>T	uc003cau.2	-	1	162	c.49G>A	c.(49-51)GAG>AAG	p.E17K	DPH3_uc003cat.3_5'Flank|DPH3_uc003cav.2_Missense_Mutation_p.E17K|OXNAD1_uc010her.1_5'Flank|OXNAD1_uc003caw.2_5'Flank|OXNAD1_uc003cax.2_5'Flank	NM_206831	NP_996662	Q96FX2	DPH3_HUMAN	zinc finger, CSL domain containing 2 isoform 1	17	DPH-type.				negative regulation of protein secretion|peptidyl-diphthamide biosynthetic process from peptidyl-histidine|positive regulation of binding	cytoplasm|nucleus	metal ion binding|protein binding				0						TCCGAGTCCTCGTCATATTGG	0.582		NaN											0	0	0	0.000602	0	4	83									
NGLY1	55768	broad.mit.edu	37	3	25805781	25805781	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:25805781G>A	uc003cdl.2	-	3	376	c.268C>T	c.(268-270)CCT>TCT	p.P90S	NGLY1_uc010hfg.2_Missense_Mutation_p.P90S|NGLY1_uc003cdm.2_Missense_Mutation_p.P90S|NGLY1_uc011awo.1_Missense_Mutation_p.P48S|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	90	PUB.				glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						GCTTTTTTAGGAAAGATGAGA	0.373		NaN											0	0	0	0.010729	0	10	92									
NEK10	152110	broad.mit.edu	37	3	27333022	27333022	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:27333022C>T	uc003cdt.1	-	18	1703	c.1429G>A	c.(1429-1431)GAT>AAT	p.D477N	NEK10_uc003cds.1_5'UTR	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	477							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GCACTGATATCACGTACATAA	0.373		NaN											0	0	0	0.004482	0	7	36									
FBXL2	25827	broad.mit.edu	37	3	33414612	33414612	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:33414612G>A	uc003cfp.2	+	6	390	c.319G>A	c.(319-321)GAA>AAA	p.E107K	FBXL2_uc011axm.1_RNA|FBXL2_uc011axn.1_RNA|FBXL2_uc011axo.1_5'UTR|FBXL2_uc011axp.1_Missense_Mutation_p.E23K|FBXL2_uc011axq.1_RNA|FBXL2_uc011axr.1_RNA|FBXL2_uc011axs.1_RNA	NM_012157	NP_036289	Q9UKC9	FBXL2_HUMAN	F-box and leucine-rich repeat protein 2	107	LRR 2.				interspecies interaction between organisms|proteolysis	cytoplasm|membrane	protein binding|ubiquitin-protein ligase activity			large_intestine(1)	1						CCGAAACATTGAACATTTGAA	0.423		NaN											0	0	0	0.00361	0	48	112									
CLASP2	23122	broad.mit.edu	37	3	33558526	33558526	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:33558526C>T	uc003cfu.2	-	34	4282	c.3928G>A	c.(3928-3930)GAA>AAA	p.E1310K	CLASP2_uc003cfs.2_Missense_Mutation_p.E517K|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Missense_Mutation_p.E910K	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	1319										ovary(3)|central_nervous_system(1)	4						TTGAAGTGTTCATCCCAAACA	0.363		NaN											0	0	0	0.00333	0	16	58									
CSPG5	10675	broad.mit.edu	37	3	47619161	47619161	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:47619161C>T	uc003crp.3	-	2	531	c.355G>A	c.(355-357)GAT>AAT	p.D119N	CSPG5_uc003crn.2_5'UTR|CSPG5_uc003cro.3_Missense_Mutation_p.D119N|CSPG5_uc011bbb.1_5'UTR	NM_006574	NP_006565	O95196	CSPG5_HUMAN	chondroitin sulfate proteoglycan 5 (neuroglycan	119	Extracellular (Potential).				cell differentiation|intracellular transport|nervous system development|regulation of growth	endoplasmic reticulum membrane|Golgi-associated vesicle membrane|integral to plasma membrane|membrane fraction	growth factor activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000266)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GCCTGGGCATCGCCGCTGCCC	0.692		NaN											0	0	0	0.00361	0	50	88									
MAP4	4134	broad.mit.edu	37	3	47958225	47958225	+	Silent	SNP	T	T	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:47958225T>C	uc003csb.2	-	7	1618	c.1092A>G	c.(1090-1092)TTA>TTG	p.L364L	MAP4_uc003csc.3_Silent_p.L364L|MAP4_uc011bbf.1_Silent_p.L341L|MAP4_uc003csf.3_Silent_p.L381L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	364	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGGGCTAAGTCCATTT	0.478		NaN											0	0	0	0.004672	0	3	119									
IP6K2	51447	broad.mit.edu	37	3	48726994	48726994	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:48726994C>T	uc003cup.2	-	5	1001	c.757G>A	c.(757-759)GGT>AGT	p.G253S	IP6K2_uc003cuq.2_Missense_Mutation_p.G253S	NM_001005909	NP_001005909	Q9UHH9	IP6K2_HUMAN	inositol hexaphosphate kinase 2 isoform a	253					negative regulation of cell growth|phosphatidylinositol phosphorylation|positive regulation of apoptosis|type I interferon-mediated signaling pathway	intermediate filament cytoskeleton|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						ACACGCACACCAATGACTGCA	0.547		NaN											0	0	0	0.003271	0	25	125									
P4HTM	54681	broad.mit.edu	37	3	49039971	49039971	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:49039971G>A	uc003cvg.2	+	4	1015	c.666G>A	c.(664-666)ATG>ATA	p.M222I	P4HTM_uc003cvh.2_Missense_Mutation_p.M222I|P4HTM_uc010hkm.1_Missense_Mutation_p.M108I	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	222	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	GATGGTGGATGACTCCAGAGA	0.577		NaN											0	0	0	0.00361	0	66	222									
SEMA3F	6405	broad.mit.edu	37	3	50214234	50214234	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:50214234G>A	uc003cyj.2	+	7	781	c.583G>A	c.(583-585)GAG>AAG	p.E195K	SEMA3F_uc003cyk.2_Missense_Mutation_p.E164K	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	195	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		TGAGCGACTCGAGTCAGGGAA	0.597		NaN											0	0	0	0.004656	0	19	263									
HYAL3	8372	broad.mit.edu	37	3	50331093	50331093	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:50331093G>C	uc003czd.1	-	3	1227	c.954C>G	c.(952-954)CTC>CTG	p.L318L	HYAL3_uc003czc.1_Intron|HYAL3_uc003cze.1_Silent_p.L69L|HYAL3_uc003czf.1_Intron|HYAL3_uc003czg.1_Intron|IFRD2_uc011bdp.1_5'Flank|IFRD2_uc003czb.2_5'Flank	NM_003549	NP_003540	O43820	HYAL3_HUMAN	hyaluronoglucosaminidase 3 precursor	318					carbohydrate metabolic process	extracellular region|lysosome	hyalurononglucosaminidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GGTCCCCCCAGAGCACCACGC	0.632		NaN											0	0	0	0.00361	0	56	169									
STAB1	23166	broad.mit.edu	37	3	52557550	52557550	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:52557550C>T	uc003dej.2	+	65	7322	c.7248C>T	c.(7246-7248)ATC>ATT	p.I2416I	STAB1_uc003dek.1_Silent_p.I431I|STAB1_uc003del.2_Silent_p.I303I	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2416	Extracellular (Potential).|FAS1 7.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCAGCCTCATCATCAGTGACG	0.647		NaN											0	0	0	0.010504	0	17	57									
CACNA1D	776	broad.mit.edu	37	3	53844150	53844150	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:53844150C>G	uc003dgv.3	+	47	6180	c.6017C>G	c.(6016-6018)TCA>TGA	p.S2006*	CACNA1D_uc003dgu.3_Nonsense_Mutation_p.S2026*|CACNA1D_uc003dgy.3_Nonsense_Mutation_p.S1982*|CACNA1D_uc003dgw.3_Nonsense_Mutation_p.S1673*|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2006	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GTGGAGCAGTCAGAGGCCCTG	0.657		NaN											0	0	0	0.001984	0	6	83									
C3orf63	23272	broad.mit.edu	37	3	56657229	56657229	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:56657229G>C	uc003did.3	-	23	4767	c.4666C>G	c.(4666-4668)CAG>GAG	p.Q1556E	C3orf63_uc003dib.3_Missense_Mutation_p.Q675E|C3orf63_uc003dic.3_Missense_Mutation_p.Q1180E|C3orf63_uc003die.3_3'UTR	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	1617										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		AAAAATGTCTGATGAGTGAGA	0.333		NaN											0	0	0	0.001984	0	6	46									
CADM2	253559	broad.mit.edu	37	3	85961684	85961684	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:85961684G>C	uc003dqj.2	+	5	1290	c.664G>C	c.(664-666)GAA>CAA	p.E222Q	CADM2_uc003dqk.2_Missense_Mutation_p.E231Q|CADM2_uc003dql.2_Missense_Mutation_p.E224Q	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	222	Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GCAGGTGCTAGAAATACACTG	0.468		NaN											0	0	0	0.004482	0	7	60									
OR5K4	403278	broad.mit.edu	37	3	98073347	98073347	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:98073347C>G	uc011bgv.1	+	1	650	c.650C>G	c.(649-651)TCT>TGT	p.S217C		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GTCTTGATCTCTTATCTCTGC	0.353		NaN											0	0	0	0.004672	0	3	22									
FAM55C	91775	broad.mit.edu	37	3	101520284	101520284	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:101520284G>A	uc003dvn.2	+	5	936	c.299G>A	c.(298-300)AGC>AAC	p.S100N	FAM55C_uc010hpn.2_Missense_Mutation_p.S100N	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	100						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						TTTGTGAAGAGCACTGACCCT	0.557		NaN											0	0	0	0.001855	0	11	73									
PHLDB2	90102	broad.mit.edu	37	3	111603754	111603754	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:111603754C>G	uc010hqa.2	+	2	1241	c.830C>G	c.(829-831)TCT>TGT	p.S277C	PHLDB2_uc003dyc.2_Missense_Mutation_p.S304C|PHLDB2_uc003dyd.2_Missense_Mutation_p.S277C|PHLDB2_uc003dyg.2_Missense_Mutation_p.S277C|PHLDB2_uc003dyh.2_Missense_Mutation_p.S277C|PHLDB2_uc003dye.3_Missense_Mutation_p.S277C|PHLDB2_uc003dyf.3_Missense_Mutation_p.S277C	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	277						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						CCAAGAAACTCTCTGGGCAAT	0.473		NaN											0	0	0	0.006214	0	8	21									
WDR52	55779	broad.mit.edu	37	3	113128161	113128161	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:113128161C>T	uc003eae.1	-	7	728	c.682G>A	c.(682-684)GAG>AAG	p.E228K		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	228	WD 1.									central_nervous_system(1)	1						TATCCCTTCTCAGTCCCATCT	0.398		NaN											0	0	0	0.001984	0	5	33									
LSAMP	4045	broad.mit.edu	37	3	115560818	115560818	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:115560818C>G	uc003ebt.2	-	6	1293	c.793G>C	c.(793-795)GAG>CAG	p.E265Q	LSAMP_uc011bis.1_Missense_Mutation_p.E265Q	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	265	Ig-like C2-type 3.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		CTCTTAATCTCAAGGCCATTG	0.483		NaN											0	0	0	0.00308	0	6	51									
FSTL1	11167	broad.mit.edu	37	3	120128498	120128498	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:120128498G>A	uc003eds.2	-	6	518	c.343C>T	c.(343-345)CAG>TAG	p.Q115*	FSTL1_uc011bjh.1_Nonsense_Mutation_p.Q80*	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	115					BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		CGGTTGGACTGATAGCAAACA	0.542		NaN											0	0	0	0.006122	0	13	52									
HSPBAP1	79663	broad.mit.edu	37	3	122459618	122459618	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:122459618C>T	uc003efu.1	-	8	1164	c.1041G>A	c.(1039-1041)CTG>CTA	p.L347L	HSPBAP1_uc003eft.1_Silent_p.L58L	NM_024610	NP_078886	Q96EW2	HBAP1_HUMAN	Hspb associated protein 1	347						cytoplasm				ovary(1)|lung(1)	2				GBM - Glioblastoma multiforme(114;0.0531)		CATCTGTTCTCAGTGCTTGGA	0.448		NaN											0	0	0	0.00278	0	21	152									
SEMA5B	54437	broad.mit.edu	37	3	122667551	122667551	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:122667551G>A	uc003efz.1	-	3	434	c.130C>T	c.(130-132)CTC>TTC	p.L44F	SEMA5B_uc011bju.1_5'UTR|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.L44F|SEMA5B_uc010hro.1_5'UTR|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	44	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		AGACAGGGGAGAAGACCTGCA	0.592		NaN											0	0	0	0.001168	0	5	46									
ADCY5	111	broad.mit.edu	37	3	123014973	123014973	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:123014973C>T	uc003egh.1	-	17	3021	c.3021G>A	c.(3019-3021)CAG>CAA	p.Q1007Q	ADCY5_uc003egg.1_Silent_p.Q665Q	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1007	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TGGACTCCACCTGCTGGGCGT	0.632		NaN											0	0	0	0.00278	0	19	126									
KALRN	8997	broad.mit.edu	37	3	124181431	124181431	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:124181431G>C	uc003ehg.2	+	25	4103	c.3976G>C	c.(3976-3978)GAG>CAG	p.E1326Q	KALRN_uc010hrv.1_Missense_Mutation_p.E1317Q|KALRN_uc003ehf.1_Missense_Mutation_p.E1326Q|KALRN_uc011bjy.1_Missense_Mutation_p.E1317Q|KALRN_uc003ehh.1_Missense_Mutation_p.E672Q	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1326	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCTCAATAAAGAGCATATCAT	0.473		NaN											0	0	0	0.004482	0	5	42									
KALRN	8997	broad.mit.edu	37	3	124211637	124211637	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:124211637G>A	uc003ehg.2	+	32	4861	c.4734G>A	c.(4732-4734)GTG>GTA	p.V1578V	KALRN_uc010hrv.1_Silent_p.V1569V|KALRN_uc003ehf.1_Silent_p.V1578V|KALRN_uc011bjy.1_Silent_p.V1569V	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1578	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TTCGAGAAGTGATTCAAGAAA	0.468		NaN											0	0	0	0.004482	0	7	87									
UMPS	7372	broad.mit.edu	37	3	124456651	124456651	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:124456651C>T	uc003ehl.3	+	3	653	c.547C>T	c.(547-549)CTC>TTC	p.L183F	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Intron|UMPS_uc011bkb.1_Missense_Mutation_p.L91F|UMPS_uc011bkc.1_Missense_Mutation_p.L5F|UMPS_uc003ehn.3_Missense_Mutation_p.L5F|UMPS_uc011bkd.1_Missense_Mutation_p.L5F	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	183	OPRTase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		GCTGGAGATTCTCGAGCAGCA	0.498		NaN											0	0	0	0.006214	0	7	33									
UMPS	7372	broad.mit.edu	37	3	124456779	124456779	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:124456779C>G	uc003ehl.3	+	3	781	c.675C>G	c.(673-675)CTC>CTG	p.L225L	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Silent_p.L47L|UMPS_uc011bkb.1_Silent_p.L133L|UMPS_uc011bkc.1_Silent_p.L47L|UMPS_uc003ehn.3_Silent_p.L47L|UMPS_uc011bkd.1_Silent_p.L47L	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	225	OMPdecase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		CCAAAGAACTCAGCTTCGGTG	0.483		NaN											0	0	0	0.000602	0	4	32									
UMPS	7372	broad.mit.edu	37	3	124456864	124456864	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:124456864C>T	uc003ehl.3	+	3	866	c.760C>T	c.(760-762)CTG>TTG	p.L254L	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Silent_p.L76L|UMPS_uc011bkb.1_Silent_p.L162L|UMPS_uc011bkc.1_Silent_p.L76L|UMPS_uc003ehn.3_Silent_p.L76L|UMPS_uc011bkd.1_Silent_p.L76L	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	254	OMPdecase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		GGAGACCAATCTGTGTCTATC	0.488		NaN											0	0	0	0.001368	0	9	74									
CCDC37	348807	broad.mit.edu	37	3	126135240	126135240	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:126135240C>T	uc003eiu.1	+	5	406	c.307C>T	c.(307-309)CGG>TGG	p.R103W	CCDC37_uc010hsg.1_Missense_Mutation_p.R103W	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	103	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		CACCAGCCTGCGGCGGCAGCT	0.662		NaN											0	0	0	0.006214	0	7	68									
ZXDC	79364	broad.mit.edu	37	3	126193835	126193835	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:126193835C>G	uc003eiv.2	-	1	928	c.874G>C	c.(874-876)GAG>CAG	p.E292Q	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Missense_Mutation_p.E292Q	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	292					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		CGCTCGGGCTCGAAGTGGCTG	0.687		NaN											0	0	0	0.004672	0	2	11									
COPG	22820	broad.mit.edu	37	3	128991687	128991687	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:128991687C>G	uc003els.2	+	21	2296	c.2196C>G	c.(2194-2196)GTC>GTG	p.V732V	COPG_uc010htb.2_Silent_p.V638V	NM_016128	NP_057212	Q9Y678	COPG_HUMAN	coatomer protein complex, subunit gamma 1	732	Interaction with ZNF289/ARFGAP2.				COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(3)|breast(1)	4						AGTTCACTGTCAAGGACTGTG	0.547		NaN											0	0	0	0.00245	0	11	67									
DNAJC13	23317	broad.mit.edu	37	3	132215491	132215491	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:132215491C>T	uc003eor.2	+	36	4205	c.4140C>T	c.(4138-4140)TTC>TTT	p.F1380F		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1380							heat shock protein binding			ovary(1)|breast(1)	2						GCATCCTCTTCAACCGTCATA	0.338		NaN											0	0	0	0.001168	0	5	27									
EPHB1	2047	broad.mit.edu	37	3	134873013	134873013	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:134873013C>G	uc003eqt.2	+	6	1537	c.1317C>G	c.(1315-1317)ATC>ATG	p.I439M	EPHB1_uc003equ.2_Translation_Start_Site	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	439	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CCGTTCCCATCATGCACCAAG	0.537		NaN											0	0	0	0.00874	0	34	278									
TMEM22	80723	broad.mit.edu	37	3	136574265	136574265	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:136574265C>G	uc003erf.3	+	2	1177	c.963C>G	c.(961-963)CTC>CTG	p.L321L	TMEM22_uc003erg.3_Silent_p.L321L|TMEM22_uc010hub.2_Silent_p.L321L	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	321	DUF6 2.|Helical; (Potential).					Golgi apparatus|integral to membrane				ovary(1)	1						GGAGTTATCTCATTGCTATAT	0.388		NaN											0	0	0	0.003954	0	22	208									
DZIP1L	199221	broad.mit.edu	37	3	137790534	137790534	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:137790534C>T	uc003erq.2	-	12	1929	c.1566G>A	c.(1564-1566)GAG>GAA	p.E522E	DZIP1L_uc003err.1_Silent_p.E522E	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	522						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						TCTCCTGTCTCTCCTTCGCTC	0.582		NaN											0	0	0	0.003163	0	12	96									
PRR23A	729627	broad.mit.edu	37	3	138724388	138724388	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:138724388C>T	uc011bms.1	-	1	723	c.723G>A	c.(721-723)GGG>GGA	p.G241G		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	241	Pro-rich.										0						GACCTGGACTCCCCACGCGCG	0.652		NaN											0	0	0	0.004672	0	2	1									
HLTF	6596	broad.mit.edu	37	3	148773120	148773120	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:148773120G>C	uc003ewq.1	-	14	1661	c.1443C>G	c.(1441-1443)ATC>ATG	p.I481M	HLTF_uc003ewr.1_Missense_Mutation_p.I481M|HLTF_uc003ews.1_Missense_Mutation_p.I480M|HLTF_uc010hve.1_Missense_Mutation_p.I480M	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	481	Helicase ATP-binding.				chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			AAAGCGGACAGATGATCAGTG	0.363		NaN											0	0	0	0.00245	0	10	62									
CLRN1	7401	broad.mit.edu	37	3	150659542	150659542	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:150659542G>A	uc003eyk.1	-	2	551	c.260C>T	c.(259-261)CCA>CTA	p.P87L	CLRN1OS_uc011bny.1_Intron|CLRN1_uc003eyj.2_Missense_Mutation_p.P11L|CLRN1_uc010hvj.1_RNA	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	87					equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GAGCAAATCTGGAAAAACTGA	0.368		NaN											0	0	0	0.009096	0	3	21									
MED12L	116931	broad.mit.edu	37	3	150903167	150903167	+	Silent	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:150903167G>T	uc003eyp.2	+	11	1583	c.1545G>T	c.(1543-1545)GTG>GTT	p.V515V	MED12L_uc011bnz.1_Silent_p.V375V|MED12L_uc003eyn.2_Silent_p.V515V|MED12L_uc003eyo.2_Silent_p.V515V	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	515					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AATGGGCCGTGAGCTGCAAAC	0.517		NaN											1	0	2.27111e-07	0.001368	2.37751e-07	10	96									
IGSF10	285313	broad.mit.edu	37	3	151155890	151155890	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:151155890G>A	uc011bod.1	-	6	6459	c.6459C>T	c.(6457-6459)ATC>ATT	p.I2153I	IGSF10_uc011bob.1_Silent_p.I180I|IGSF10_uc011boc.1_Silent_p.I132I	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2153	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTCCAGCTTTGATTCTCTTGT	0.453		NaN											0	0	0	0.010729	0	9	42									
IGSF10	285313	broad.mit.edu	37	3	151166756	151166756	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:151166756G>C	uc011bod.1	-	4	1013	c.1013C>G	c.(1012-1014)TCA>TGA	p.S338*		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	338					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGATGTCCTTGAGGGCTTTTG	0.413		NaN											0	0	0	0.001855	0	11	76									
C3orf70	285382	broad.mit.edu	37	3	184870595	184870595	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:184870595G>A	uc003fpd.2	-	1	208	c.17C>T	c.(16-18)TCG>TTG	p.S6L		NM_001025266	NP_001020437	A6NLC5	CC070_HUMAN	hypothetical protein LOC285382	6											0						CGACGCCGGCGAGGCCGCCGC	0.716		NaN											0	0	0	0.004482	0	6	35									
LPP	4026	broad.mit.edu	37	3	188327106	188327106	+	Missense_Mutation	SNP	T	T	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:188327106T>C	uc003frs.1	+	6	833	c.587T>C	c.(586-588)ATC>ACC	p.I196T	LPP_uc011bsg.1_Missense_Mutation_p.I196T|LPP_uc011bsi.1_Missense_Mutation_p.I196T|LPP_uc003frt.2_Missense_Mutation_p.I196T|LPP_uc011bsj.1_Missense_Mutation_p.I33T	NM_005578	NP_005569	Q93052	LPP_HUMAN	LIM domain containing preferred translocation	196	Pro-rich.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	soft_tissue(134)|bone(27)|lung(2)|ovary(1)|breast(1)	165	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		GTGGCTCCAATCGGAACACTC	0.562		NaN	T	HMGA2|MLL|C12orf9	lipoma|leukemia								0	0	0	0.008361	0	28	132									
CCDC50	152137	broad.mit.edu	37	3	191100573	191100573	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:191100573G>A	uc003fsw.2	+	9	1343	c.753G>A	c.(751-753)GAG>GAA	p.E251E	CCDC50_uc003fsv.2_Silent_p.E427E	NM_174908	NP_777568	Q8IVM0	CCD50_HUMAN	Ymer protein short isoform	251						cytoplasm	protein binding				0	all_cancers(143;8.88e-09)|Ovarian(172;0.103)|Breast(254;0.221)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000136)		AGTCAAAAGAGAGTGATGAAC	0.373		NaN											0	0	0	0.001168	0	3	30									
PYDC2	152138	broad.mit.edu	37	3	191178959	191178959	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:191178959C>T	uc011bso.1	+	1	8	c.8C>T	c.(7-9)TCT>TTT	p.S3F		NM_001083308	NP_001076777	Q56P42	PYDC2_HUMAN	pyrin domain containing 2	3	DAPIN.					cytoplasm|nucleus					0						AAGATGGCATCTTCTGCAGAG	0.428		NaN											0	0	0	0.001855	0	8	63									
ATP13A4	84239	broad.mit.edu	37	3	193130105	193130105	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:193130105G>A	uc003ftd.2	-	27	3178	c.3070C>T	c.(3070-3072)CCA>TCA	p.P1024S	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1024	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ATTTTTTCTGGAGCAGTTGGA	0.408		NaN											0	0	0	0.00333	0	18	139									
HES1	3280	broad.mit.edu	37	3	193855682	193855682	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:193855682C>T	uc003ftq.1	+	4	739	c.503C>T	c.(502-504)CCG>CTG	p.P168L		NM_005524	NP_005515	Q14469	HES1_HUMAN	hairy and enhancer of split 1	168	Pro-rich.				endocrine pancreas development|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway	nucleus	histone deacetylase binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)	2	all_cancers(143;7.3e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;3.65e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;1.48e-05)		GCGCCGCCACCGCCCCCACCG	0.627		NaN											0	0	0	0.001855	0	7	106									
ATP13A3	79572	broad.mit.edu	37	3	194146180	194146180	+	Missense_Mutation	SNP	T	T	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:194146180T>C	uc003fty.3	-	29	3606	c.3204A>G	c.(3202-3204)ATA>ATG	p.I1068M	ATP13A3_uc003ftx.3_Translation_Start_Site	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	1068					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		CATAATTTTGTATATTATGTT	0.358		NaN											0	0	0	0.00308	0	6	35									
ACAP2	23527	broad.mit.edu	37	3	195053852	195053852	+	Missense_Mutation	SNP	T	T	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr3:195053852T>A	uc003fun.3	-	8	815	c.574A>T	c.(574-576)ATG>TTG	p.M192L		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	192	BAR.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						AATGACAACATCTAATAGGGA	0.279		NaN											0	0	0	0.001855	0	12	57									
PIGG	54872	broad.mit.edu	37	4	499636	499636	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:499636G>A	uc003gak.3	+	3	626	c.490G>A	c.(490-492)GAA>AAA	p.E164K	PIGG_uc003gaj.3_Missense_Mutation_p.E164K|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Intron|PIGG_uc003gal.3_Missense_Mutation_p.E75K|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Missense_Mutation_p.E42K|PIGG_uc003gam.2_Missense_Mutation_p.E75K|PIGG_uc003gan.2_Missense_Mutation_p.E75K	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	164	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						TTATGGAGATGAAACCTGGGT	0.383		NaN											0	0	0	0.00308	0	7	54									
KIAA1530	57654	broad.mit.edu	37	4	1343568	1343568	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:1343568G>A	uc003gde.3	+	3	802	c.355G>A	c.(355-357)GGG>AGG	p.G119R		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	119											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			GGCCGTGGAAGGGTGGAATGA	0.612		NaN											0	0	0	0.00308	0	5	31									
WHSC1	7468	broad.mit.edu	37	4	1940246	1940246	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:1940246C>G	uc003gdz.3	+	8	1919	c.1743C>G	c.(1741-1743)CTC>CTG	p.L581L	WHSC1_uc003geb.3_Silent_p.L581L|WHSC1_uc003gec.3_Silent_p.L581L|WHSC1_uc003ged.3_Silent_p.L581L|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_5'Flank|WHSC1_uc003gdy.1_Silent_p.L581L|WHSC1_uc010icd.1_Silent_p.L581L|WHSC1_uc003gea.1_Silent_p.L581L|WHSC1_uc010ice.1_Silent_p.L581L|WHSC1_uc003geh.1_Silent_p.L581L	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	581					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		CCTCCTCGCTCAAGAGCCAGG	0.498		NaN	T	IGH@	MM								0	0	0	0.001855	0	10	86									
FAM193A	8603	broad.mit.edu	37	4	2673965	2673965	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:2673965G>C	uc010icl.2	+	11	1675	c.1324G>C	c.(1324-1326)GAG>CAG	p.E442Q	FAM193A_uc010ick.2_Missense_Mutation_p.E642Q|FAM193A_uc003gfd.2_Missense_Mutation_p.E442Q|FAM193A_uc011bvm.1_Missense_Mutation_p.E464Q|FAM193A_uc011bvn.1_Missense_Mutation_p.E442Q|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.E296Q	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	442										ovary(3)	3						CTTGAGCCCAGAGAAGCCCAC	0.552		NaN											0	0	0	0.001368	0	11	85									
LRPAP1	4043	broad.mit.edu	37	4	3516565	3516565	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:3516565C>G	uc003ghi.2	-	7	1010	c.925G>C	c.(925-927)GAG>CAG	p.E309Q		NM_002337	NP_002328	P30533	AMRP_HUMAN	low density lipoprotein receptor-related protein	309	LDL receptor binding (Potential).|Potential.				negative regulation of protein binding|negative regulation of very-low-density lipoprotein particle clearance|protein folding|vesicle-mediated transport	cell surface|integral to membrane|plasma membrane	asialoglycoprotein receptor activity|heparin binding|low-density lipoprotein particle receptor binding|receptor antagonist activity|unfolded protein binding|very-low-density lipoprotein particle receptor binding			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.165)		CCCACGCTCTCTGCGTGCCTC	0.632		NaN											0	0	0	0.010504	0	19	148									
CRMP1	1400	broad.mit.edu	37	4	5827255	5827255	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:5827255G>A	uc003gip.2	-	14	1694	c.1593C>T	c.(1591-1593)ATC>ATT	p.I531I	EVC_uc003gim.1_Intron|CRMP1_uc003gin.1_Silent_p.I443I|CRMP1_uc003giq.2_Silent_p.I531I|CRMP1_uc003gir.2_Silent_p.I526I|CRMP1_uc003gis.2_Silent_p.I645I	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	531					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		GGAGGTTTCTGATGGGTGGGG	0.547		NaN											0	0	0	0.004007	0	13	80									
GRPEL1	80273	broad.mit.edu	37	4	7062677	7062677	+	Missense_Mutation	SNP	C	C	T	rs144832422	byFrequency	TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:7062677C>T	uc003gjy.1	-	4	607	c.566G>A	c.(565-567)GGC>GAC	p.G189D	GRPEL1_uc003gjz.1_3'UTR	NM_025196	NP_079472	Q9HAV7	GRPE1_HUMAN	GrpE-like 1, mitochondrial precursor	189					protein folding|protein import into mitochondrial matrix	mitochondrial matrix	adenyl-nucleotide exchange factor activity|chaperone binding|protein homodimerization activity|unfolded protein binding				0						GGCCACTGTGCCTGGCTCCTT	0.567		NaN											0	0	0	0.011902	0	43	255									
ANAPC4	29945	broad.mit.edu	37	4	25395483	25395483	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:25395483G>C	uc003gro.2	+	11	975	c.846G>C	c.(844-846)CAG>CAC	p.Q282H	ANAPC4_uc003grp.2_Missense_Mutation_p.Q167H|ANAPC4_uc010iet.1_Intron|ANAPC4_uc010ieu.1_Missense_Mutation_p.Q91H	NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	282					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				TACTAATGCAGATGGATTCTC	0.333		NaN											0	0	0	0.001984	0	4	43									
RBPJ	3516	broad.mit.edu	37	4	26432520	26432520	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:26432520C>T	uc003grx.1	+	12	1630	c.1394C>T	c.(1393-1395)TCA>TTA	p.S465L	RBPJ_uc003gry.1_Missense_Mutation_p.S450L|RBPJ_uc003grz.1_Missense_Mutation_p.S465L|RBPJ_uc003gsa.1_Missense_Mutation_p.S451L|RBPJ_uc003gsb.1_Missense_Mutation_p.S452L|RBPJ_uc003gsc.1_3'UTR|uc003gsd.2_5'Flank	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	465					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				CGAGCCAATTCAAGCCAGGTG	0.507		NaN											0	0	0	0.010729	0	10	69									
FAM114A1	92689	broad.mit.edu	37	4	38910248	38910248	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:38910248G>A	uc003gtn.2	+	7	869	c.693G>A	c.(691-693)TTG>TTA	p.L231L	FAM114A1_uc011byh.1_Silent_p.L24L	NM_138389	NP_612398	Q8IWE2	NXP20_HUMAN	hypothetical protein LOC92689	231						cytoplasm				ovary(1)	1						TTGATGCGTTGGAATTCATCG	0.468		NaN											0	0	0	0.001984	0	7	64									
KLHL5	51088	broad.mit.edu	37	4	39116803	39116803	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:39116803G>A	uc003gts.2	+	10	2139	c.2064G>A	c.(2062-2064)TGG>TGA	p.W688*	KLHL5_uc003gtp.2_Nonsense_Mutation_p.W642*|KLHL5_uc003gtq.2_Nonsense_Mutation_p.W501*|KLHL5_uc003gtr.1_Nonsense_Mutation_p.W688*|KLHL5_uc003gtt.2_Nonsense_Mutation_p.W627*	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	688	Kelch 5.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1						CAGACATGTGGACTGCAGTAG	0.398		NaN											0	0	0	0.008291	0	7	82									
KLB	152831	broad.mit.edu	37	4	39448748	39448748	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:39448748C>G	uc003gua.2	+	4	2499	c.2402C>G	c.(2401-2403)TCG>TGG	p.S801W	KLB_uc011byj.1_Missense_Mutation_p.S792W	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	801	Extracellular (Potential).|Glycosyl hydrolase-1 2.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						CTTTCCAGCTCGGCCCTGCCG	0.647		NaN											0	0	0	0.00499	0	16	74									
RHOH	399	broad.mit.edu	37	4	40245012	40245012	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:40245012G>C	uc003guz.2	+	3	730	c.6G>C	c.(4-6)CTG>CTC	p.L2L		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	2					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						GGAAGATGCTGAGTTCCATCA	0.582		NaN											0	0	0	0.007413	0	16	88									
KDR	3791	broad.mit.edu	37	4	55968637	55968637	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:55968637G>A	uc003has.2	-	14	2328	c.2026C>T	c.(2026-2028)CAG>TAG	p.Q676*	KDR_uc003hat.1_Nonsense_Mutation_p.Q676*	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	676	Ig-like C2-type 7.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTTGTCGTCTGATTCTCCAGG	0.438		NaN	Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			0	0	0	0.000602	0	4	15									
KIAA1211	57482	broad.mit.edu	37	4	57179512	57179512	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:57179512G>A	uc003hbk.2	+	7	895	c.504G>A	c.(502-504)CAG>CAA	p.Q168Q	KIAA1211_uc010iha.2_Silent_p.Q161Q|KIAA1211_uc011bzz.1_Silent_p.Q78Q|KIAA1211_uc003hbm.1_Silent_p.Q54Q	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	168										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CAAAAAAACAGAGGGTGTCAA	0.567		NaN											0	0	0	0.001855	0	12	102									
SPINK2	6691	broad.mit.edu	37	4	57677932	57677932	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:57677932C>T	uc003hcg.1	-	3	193	c.128G>A	c.(127-129)GGA>GAA	p.G43E		NM_021114	NP_066937	P20155	ISK2_HUMAN	serine protease inhibitor, Kazal type 2	43	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity				0	Glioma(25;0.08)|all_neural(26;0.181)					TCTGGGACATCCTGGTAATCT	0.393		NaN											0	0	0	0.00278	0	19	134									
C4orf14	84273	broad.mit.edu	37	4	57829640	57829640	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:57829640C>A	uc003hck.2	-	7	2148	c.2073G>T	c.(2071-2073)AAG>AAT	p.K691N		NM_032313	NP_115689	Q8NC60	CD014_HUMAN	hypothetical protein LOC84273	691							GTP binding			ovary(1)|breast(1)	2	Glioma(25;0.08)|all_neural(26;0.181)					TTCCTTTCTTCTTCCTCACGT	0.358		NaN											1	0	2.39556e-15	0.00278	2.57008e-15	21	88									
ANKRD17	26057	broad.mit.edu	37	4	74019627	74019627	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:74019627C>G	uc003hgp.2	-	6	1321	c.1204G>C	c.(1204-1206)GAG>CAG	p.E402Q	ANKRD17_uc003hgo.2_Missense_Mutation_p.E289Q|ANKRD17_uc003hgq.2_Missense_Mutation_p.E402Q|ANKRD17_uc003hgr.2_Missense_Mutation_p.E402Q|ANKRD17_uc011cbd.1_Missense_Mutation_p.E31Q	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	402	ANK 6.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGGGCACTCTCTTTAAATTCA	0.348		NaN											0	0	0	0.004482	0	6	57									
PPEF2	5470	broad.mit.edu	37	4	76817437	76817437	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:76817437C>T	uc003hix.2	-	2	399	c.42G>A	c.(40-42)CAG>CAA	p.Q14Q	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.Q14Q	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	14					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCTCTGCATTCTGGAAAGCAA	0.527		NaN									OREG0016229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00278	0	16	105									
SDAD1	55153	broad.mit.edu	37	4	76882204	76882204	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:76882204G>A	uc003hje.3	-	16	1452	c.1333C>T	c.(1333-1335)CAG>TAG	p.Q445*	SDAD1_uc003hjf.3_Nonsense_Mutation_p.Q348*|SDAD1_uc011cbr.1_Nonsense_Mutation_p.Q408*	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	445					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGCAGCATCTGAGGATTCAGT	0.363		NaN											0	0	0	0.007413	0	14	99									
PRKG2	5593	broad.mit.edu	37	4	82065388	82065388	+	Silent	SNP	C	C	T	rs112801782	byFrequency	TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:82065388C>T	uc003hmh.2	-	9	1265	c.1251G>A	c.(1249-1251)GCG>GCA	p.A417A	PRKG2_uc011ccf.1_5'UTR|PRKG2_uc011ccg.1_5'UTR|PRKG2_uc011cch.1_Silent_p.A417A	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	417	cGMP 2.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						CCACTTACTTCGCATGTCTTT	0.428		NaN											0	0	0	0.004482	0	7	34									
PTPN13	5783	broad.mit.edu	37	4	87730928	87730928	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:87730928G>C	uc003hpz.2	+	46	7570	c.7090G>C	c.(7090-7092)GAG>CAG	p.E2364Q	PTPN13_uc003hpy.2_Missense_Mutation_p.E2369Q|PTPN13_uc003hqa.2_Missense_Mutation_p.E2345Q|PTPN13_uc003hqb.2_Missense_Mutation_p.E2173Q	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	2364	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TCAGACCAGAGAGGTGCGCCA	0.323		NaN											0	0	0	0.003163	0	11	70									
DSPP	1834	broad.mit.edu	37	4	88534227	88534227	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:88534227C>G	uc003hqu.2	+	4	1009	c.889C>G	c.(889-891)CAA>GAA	p.Q297E		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	297					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		TAGCATAGGTCAAAATTCAGA	0.428		NaN											0	0	0	0.00308	0	6	30									
HERC6	55008	broad.mit.edu	37	4	89334244	89334244	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:89334244G>A	uc011cdi.1	+	12	1567	c.1384G>A	c.(1384-1386)GAG>AAG	p.E462K	HERC6_uc011cdj.1_Missense_Mutation_p.E462K|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	462					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		TACGTGTCTCGAGGATGATCT	0.433		NaN											0	0	0	0.00623	0	26	150									
SMARCAD1	56916	broad.mit.edu	37	4	95201922	95201922	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:95201922G>A	uc003htc.3	+	20	2853	c.2598G>A	c.(2596-2598)TTG>TTA	p.L866L	SMARCAD1_uc003htb.3_Silent_p.L868L|SMARCAD1_uc003htd.3_Silent_p.L868L|SMARCAD1_uc010ila.2_Silent_p.L731L|SMARCAD1_uc011cdw.1_Silent_p.L436L	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	866	Helicase C-terminal.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TGTCTGAATTGAAACAGAAGG	0.323		NaN											0	0	0	0.001368	0	10	67									
ADH1A	124	broad.mit.edu	37	4	100200605	100200605	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:100200605C>G	uc003hur.1	-	8	1152	c.1081G>C	c.(1081-1083)GAC>CAC	p.D361H	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.D361H	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	361					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	TGAAGCAGGTCAAATCCTTCA	0.338		NaN											0	0	0	0.001168	0	6	11									
MTTP	4547	broad.mit.edu	37	4	100512501	100512501	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:100512501C>T	uc003hvc.3	+	6	867	c.611C>T	c.(610-612)CCA>CTA	p.P204L	MTTP_uc011cej.1_Missense_Mutation_p.P231L	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	204	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TTTACGACCCCAAATCAGGTA	0.328		NaN											0	0	0	0.009096	0	3	22									
BANK1	55024	broad.mit.edu	37	4	102981531	102981531	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:102981531G>C	uc003hvy.3	+	12	2407	c.2133G>C	c.(2131-2133)CTG>CTC	p.L711L	BANK1_uc003hvx.3_Silent_p.L696L|BANK1_uc010ill.2_Silent_p.L578L|BANK1_uc003hvz.3_Silent_p.L681L	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	711					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AAAGTGGCCTGGAAATGATTC	0.413		NaN											0	0	0	0.00308	0	6	39									
RRH	10692	broad.mit.edu	37	4	110757312	110757312	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:110757312G>A	uc003hzv.2	+	4	581	c.547G>A	c.(547-549)GAT>AAT	p.D183N		NM_006583	NP_006574	O14718	OPSX_HUMAN	peropsin	183	Extracellular.				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00109)		GAGGAAAAATGATAGGTAAGA	0.398		NaN											0	0	0	0.001168	0	5	42									
ENPEP	2028	broad.mit.edu	37	4	111430911	111430911	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:111430911C>G	uc003iab.3	+	5	1484	c.1142C>G	c.(1141-1143)TCA>TGA	p.S381*		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	381	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GAATCAGCCTCATCAAACCAA	0.453		NaN											0	0	0	0.006214	0	7	70									
SYNPO2	171024	broad.mit.edu	37	4	119947939	119947939	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:119947939G>A	uc003icm.3	+	3	611	c.415G>A	c.(415-417)GAA>AAA	p.E139K	SYNPO2_uc010ina.2_Missense_Mutation_p.E139K|SYNPO2_uc010inb.2_Missense_Mutation_p.E139K|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.E67K	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	139						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TGTCAAGACTGAAGTTCCCCT	0.542		NaN											0	0	0	0.006214	0	7	41									
MAD2L1	4085	broad.mit.edu	37	4	120987847	120987847	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:120987847C>T	uc003idl.2	-	1	167	c.43G>A	c.(43-45)GGG>AGG	p.G15R	MAD2L1_uc003idm.2_Missense_Mutation_p.G15R	NM_002358	NP_002349	Q13257	MD2L1_HUMAN	MAD2-like 1	15	HORMA.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of apoptosis|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of mitotic cell cycle spindle assembly checkpoint	condensed chromosome kinetochore|cytosol|nucleus|perinuclear region of cytoplasm	protein homodimerization activity				0						TCGGCGCTCCCGCGCAGGGTG	0.637		NaN											0	0	0	0.008291	0	8	63									
PLK4	10733	broad.mit.edu	37	4	128811324	128811324	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:128811324G>C	uc003ifo.2	+	7	2008	c.1763G>C	c.(1762-1764)AGA>ACA	p.R588T	PLK4_uc011cgs.1_Missense_Mutation_p.R556T|PLK4_uc011cgt.1_Missense_Mutation_p.R547T	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	588					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						CGTACATTAAGAAGCATTACA	0.393		NaN											0	0	0	0.006214	0	8	40									
MAML3	55534	broad.mit.edu	37	4	140646942	140646942	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:140646942C>G	uc003ihz.1	-	6	3116	c.2364G>C	c.(2362-2364)CGG>CGC	p.R788R	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Silent_p.R256R	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	789	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GGTATGGATTCCGCTGTGGCT	0.512		NaN											0	0	0	0.008871	0	15	115									
PET112L	5188	broad.mit.edu	37	4	152682052	152682052	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:152682052C>T	uc003iml.2	-	1	95	c.83G>A	c.(82-84)AGA>AAA	p.R28K	PET112L_uc003imm.3_Missense_Mutation_p.R28K	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	28						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CGGAGCCCCTCTTCGGTGGCA	0.622		NaN											0	0	0	0.006214	0	8	69									
KIAA0922	23240	broad.mit.edu	37	4	154517430	154517430	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:154517430C>T	uc003inm.3	+	20	2065	c.2013C>T	c.(2011-2013)TCC>TCT	p.S671S	KIAA0922_uc010ipp.2_Silent_p.S672S|KIAA0922_uc010ipq.2_Silent_p.S440S	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	671	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				CTGAGGAATCCAGGTTTGGCA	0.413		NaN											0	0	0	0.00245	0	12	89									
PALLD	23022	broad.mit.edu	37	4	169602528	169602528	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:169602528C>G	uc011cjx.1	+	4	1344	c.1133C>G	c.(1132-1134)TCA>TGA	p.S378*	PALLD_uc003iru.2_Nonsense_Mutation_p.S378*|PALLD_uc003irv.2_Translation_Start_Site	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	378					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GCTTTCAAATCAAGAGCTGGA	0.373		NaN							Pancreatic_Cancer_Familial_Clustering_of				0	0	0	0.008291	0	8	54									
GALNTL6	442117	broad.mit.edu	37	4	173269825	173269825	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:173269825G>A	uc003isv.2	+	5	1274	c.538G>A	c.(538-540)GAC>AAC	p.D180N		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	180	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						TCTAGTAGATGACTTCAGTGA	0.383		NaN											0	0	0	0.001984	0	5	46									
MORF4	10934	broad.mit.edu	37	4	174537452	174537452	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:174537452A>G	uc011cke.1	-	1	343	c.343T>C	c.(343-345)TCT>CCT	p.S115P		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TTTCCATGAGATTTCTTGTAA	0.398		NaN											0	0	0	0.001855	0	13	104									
SNX25	83891	broad.mit.edu	37	4	186274687	186274687	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:186274687G>A	uc003ixh.2	+	15	2212	c.2023G>A	c.(2023-2025)GAT>AAT	p.D675N	SNX25_uc010ish.2_Missense_Mutation_p.D391N|SNX25_uc003ixi.2_Missense_Mutation_p.D179N	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	675					cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		TGATGATGTGGATGGGAGGAA	0.418		NaN											0	0	0	0.010729	0	10	72									
LRP2BP	55805	broad.mit.edu	37	4	186295477	186295477	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr4:186295477C>T	uc003ixj.1	-	4	1281	c.469G>A	c.(469-471)GAA>AAA	p.E157K	LRP2BP_uc003ixk.1_Missense_Mutation_p.E131K|LRP2BP_uc011ckr.1_Missense_Mutation_p.E157K	NM_018409	NP_060879	Q9P2M1	LR2BP_HUMAN	LRP2 binding protein	157	Sel1-like 2.					cytoplasm	protein binding				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;2.14e-25)|Epithelial(43;1.55e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-11)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000766)|Colorectal(24;0.00116)|LUSC - Lung squamous cell carcinoma(40;0.00904)|COAD - Colon adenocarcinoma(29;0.0101)|READ - Rectum adenocarcinoma(43;0.161)		GATTACCTTTCAGCTTCCTCA	0.413		NaN											0	0	0	0.001984	0	5	72									
PLEKHG4B	153478	broad.mit.edu	37	5	155046	155046	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:155046G>A	uc003jak.2	+	6	1031	c.981G>A	c.(979-981)CTG>CTA	p.L327L		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	327					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GCTGCCAGCTGACCGCAGACC	0.572		NaN											0	0	0	0.005443	0	24	92									
ADAMTS16	170690	broad.mit.edu	37	5	5239963	5239963	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:5239963C>T	uc003jdl.2	+	16	2586	c.2448C>T	c.(2446-2448)TTC>TTT	p.F816F	ADAMTS16_uc003jdk.1_Silent_p.F816F	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	816	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GCACTACTTTCGACTACAGAC	0.517		NaN											0	0	0	0.00278	0	19	131									
NSUN2	54888	broad.mit.edu	37	5	6605470	6605470	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:6605470C>T	uc003jdu.2	-	15	1718	c.1653G>A	c.(1651-1653)CGG>CGA	p.R551R	NSUN2_uc003jds.2_5'Flank|NSUN2_uc003jdt.2_Silent_p.R315R|NSUN2_uc011cmk.1_Silent_p.R516R|NSUN2_uc003jdv.2_Silent_p.R315R	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	551						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						CTTCTGTAGTCCGAGTTAACA	0.413		NaN											0	0	0	0.001368	0	13	126									
FAM105A	54491	broad.mit.edu	37	5	14601215	14601215	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:14601215C>T	uc003jfj.2	+	2	319	c.206C>T	c.(205-207)TCA>TTA	p.S69L		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	69										ovary(1)	1	Lung NSC(4;0.00592)					CATTTATATTCAGGGCACAAG	0.398		NaN											0	0	0	0.004656	0	22	208									
RNASEN	29102	broad.mit.edu	37	5	31515224	31515224	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:31515224G>C	uc003jhg.2	-	7	1520	c.1161C>G	c.(1159-1161)ATC>ATG	p.I387M	RNASEN_uc003jhh.2_Missense_Mutation_p.I350M|RNASEN_uc003jhi.2_Missense_Mutation_p.I350M|RNASEN_uc010iui.1_Missense_Mutation_p.I310M	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	387					gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						CTTTTTCCTTGATTGAGGTAT	0.468		NaN											0	0	0	0.001984	0	7	65									
MTMR12	54545	broad.mit.edu	37	5	32229910	32229910	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:32229910C>G	uc003jhq.2	-	16	2388	c.2218G>C	c.(2218-2220)GAG>CAG	p.E740Q	MTMR12_uc010iuk.2_Missense_Mutation_p.E686Q|MTMR12_uc010iul.2_Missense_Mutation_p.E630Q	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	740						cytoplasm	phosphatase activity			ovary(1)	1						TCCACGAACTCATCTTCTCGT	0.507		NaN											0	0	0	0.003163	0	14	104									
RXFP3	51289	broad.mit.edu	37	5	33937059	33937059	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:33937059G>C	uc003jic.1	+	1	571	c.214G>C	c.(214-216)GAG>CAG	p.E72Q		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	72	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						CGGCGGGGCAGAGAGCGCGGA	0.692		NaN											0	0	0	0.001368	0	10	142									
UGT3A2	167127	broad.mit.edu	37	5	36035959	36035959	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:36035959G>A	uc003jjz.1	-	7	1506	c.1413C>T	c.(1411-1413)CTC>CTT	p.L471L	UGT3A2_uc011cos.1_Silent_p.L437L|UGT3A2_uc011cot.1_Silent_p.L169L	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	471	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CATAGGGCTTGAGGTGCGTCG	0.617		NaN											0	0	0	0.00499	0	13	54									
SLC1A3	6507	broad.mit.edu	37	5	36677231	36677231	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:36677231G>C	uc003jkj.3	+	6	1281	c.805G>C	c.(805-807)GAG>CAG	p.E269Q	SLC1A3_uc011cox.1_Missense_Mutation_p.E162Q|SLC1A3_uc010iuy.2_Missense_Mutation_p.E269Q	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	269					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GGCCCTGAGAGAGTTCTTTGA	0.413		NaN											0	0	0	0.000602	0	4	57									
C5orf42	65250	broad.mit.edu	37	5	37174003	37174003	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:37174003G>A	uc011cpa.1	-	32	6256	c.6025C>T	c.(6025-6027)CTG>TTG	p.L2009L	C5orf42_uc011coy.1_Silent_p.L509L|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Silent_p.L1084L|C5orf42_uc003jkr.1_Silent_p.L42L	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2009										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TTTGATATCAGAAGTGGAACT	0.373		NaN											0	0	0	0.000602	0	3	55									
SNX18	112574	broad.mit.edu	37	5	53813855	53813855	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:53813855G>A	uc003jpj.3	+	1	263	c.73G>A	c.(73-75)GAG>AAG	p.E25K	SNX18_uc011cqg.1_Missense_Mutation_p.E25K|SNX18_uc003jpi.3_Missense_Mutation_p.E25K	NM_052870	NP_443102	Q96RF0	SNX18_HUMAN	sorting nexin 18 isoform b	25	SH3.				cell communication|endocytosis|positive regulation of GTPase activity|protein transport	endomembrane system|endosome membrane|extrinsic to internal side of plasma membrane	phosphatidylinositol binding|protein binding				0		Lung NSC(810;3.46e-05)|Breast(144;0.102)				GCGAGAGCACGAGGTGCTGAG	0.706		NaN											0	0	0	0.004672	0	3	14									
ANKRD55	79722	broad.mit.edu	37	5	55407501	55407501	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:55407501C>T	uc003jqu.2	-	10	1226	c.1074G>A	c.(1072-1074)CAG>CAA	p.Q358Q	ANKRD55_uc003jqt.2_Silent_p.Q70Q	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	357										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GATGGGCTCTCTGCTCTTCTT	0.522		NaN											0	0	0	0.00245	0	13	130									
MAP3K1	4214	broad.mit.edu	37	5	56178366	56178366	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:56178366C>T	uc003jqw.3	+	14	3840	c.3339C>T	c.(3337-3339)TTC>TTT	p.F1113F		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	1113					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		AGACAGTGTTCACCCCAGTAG	0.433		NaN											0	0	0	0.004482	0	6	48									
ELOVL7	79993	broad.mit.edu	37	5	60050591	60050591	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:60050591G>T	uc003jsi.3	-	9	906	c.706C>A	c.(706-708)CCA>ACA	p.P236T	ELOVL7_uc011cqo.1_Missense_Mutation_p.P149T|ELOVL7_uc010iwk.2_Missense_Mutation_p.P236T|ELOVL7_uc003jsj.3_Missense_Mutation_p.P223T	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	236					fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				GCAAAGACTGGAAACTGATAC	0.393		NaN											1	0	0.00116845	0.001168	0.00119519	5	23									
HTR1A	3350	broad.mit.edu	37	5	63257087	63257087	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:63257087C>T	uc011cqt.1	-	1	460	c.460G>A	c.(460-462)GCT>ACT	p.A154T		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	154	Helical; Name=4; (By similarity).			RAA -> PR (in Ref. 1; AAA36440/CAA31908).	behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	ATGAGCGCAGCGGCGCGCCGG	0.647		NaN											0	0	0	0.004007	0	17	60									
BDP1	55814	broad.mit.edu	37	5	70860685	70860685	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:70860685C>G	uc003kbp.1	+	39	8111	c.7848C>G	c.(7846-7848)ATC>ATG	p.I2616M	BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2616					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TCAATGATATCTTCATTGAAG	0.368		NaN											0	0	0	0.00308	0	8	73									
MAP1B	4131	broad.mit.edu	37	5	71492567	71492567	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:71492567G>A	uc003kbw.3	+	5	3626	c.3385G>A	c.(3385-3387)GAG>AAG	p.E1129K	MAP1B_uc010iyw.1_Missense_Mutation_p.E1146K|MAP1B_uc010iyx.1_Missense_Mutation_p.E1003K|MAP1B_uc010iyy.1_Missense_Mutation_p.E1003K	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1129						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GATATCCAGTGAGCCCACCCC	0.512		NaN											0	0	0	0.004482	0	6	42									
S100Z	170591	broad.mit.edu	37	5	76171199	76171199	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:76171199C>T	uc003kep.1	+	3	345	c.15C>T	c.(13-15)CTC>CTT	p.L5L	S100Z_uc003keq.3_Silent_p.L5L	NM_130772	NP_570128	Q8WXG8	S100Z_HUMAN	S100 calcium binding protein Z	5							calcium ion binding			ovary(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;8.91e-51)|Epithelial(54;5.43e-45)|all cancers(79;1.82e-40)		CCACCCAGCTCGAGATGGCCA	0.522		NaN											0	0	0	0.001168	0	5	27									
SPZ1	84654	broad.mit.edu	37	5	79616517	79616517	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:79616517C>G	uc003kgn.2	+	1	728	c.483C>G	c.(481-483)ATC>ATG	p.I161M	uc011ctk.1_Intron	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		AAGAAAATATCAGAGGACTTG	0.373		NaN											0	0	0	0.001168	0	4	35									
APC	324	broad.mit.edu	37	5	112174757	112174757	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			G	T	G	G		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:112174757G>T	uc010jby.2	+	16	3846	c.3466G>T	c.(3466-3468)GAA>TAA	p.E1156*	APC_uc011cvt.1_Nonsense_Mutation_p.E1138*|APC_uc003kpz.3_Nonsense_Mutation_p.E1156*|APC_uc003kpy.3_Nonsense_Mutation_p.E1156*|APC_uc010jbz.2_Nonsense_Mutation_p.E873*|APC_uc010jca.2_Nonsense_Mutation_p.E456*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1156	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.|Asp/Glu-rich (acidic).				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.E1156fs*8(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GCATGAAGAAGAAGAGAGACC	0.338		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			1	0	3.59834e-05	0.001168	3.71589e-05	6	20									
ZNF608	57507	broad.mit.edu	37	5	124036729	124036729	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:124036729G>A	uc003ktq.1	-	2	1263	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_Silent_p.I380I|ZNF608_uc003ktt.1_Silent_p.I380I	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	380						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CATGCCACACGATCCCTTCCA	0.443		NaN											0	0	0	0.009096	0	3	71									
CDKN2AIPNL	91368	broad.mit.edu	37	5	133747454	133747454	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:133747454G>C	uc011cxs.1	-	1	136	c.92C>G	c.(91-93)TCA>TGA	p.S31*	CDKN2AIPNL_uc003kzi.1_Nonsense_Mutation_p.S31*	NM_080656	NP_542387	Q96HQ2	C2AIL_HUMAN	CDKN2A interacting protein N-terminal like	31											0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCGCTCTCTGAGTAGGAGCG	0.697		NaN									OREG0016789	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00308	0	6	33									
SEC24A	10802	broad.mit.edu	37	5	134022530	134022530	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:134022530C>G	uc003kzs.2	+	10	1830	c.1542C>G	c.(1540-1542)CAC>CAG	p.H514Q	SEC24A_uc011cxu.1_Missense_Mutation_p.H278Q	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	514					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATGTGTCTCACAATGCAGTCG	0.333		NaN											0	0	0	0.001168	0	4	73									
SEC24A	10802	broad.mit.edu	37	5	134032871	134032871	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:134032871C>G	uc003kzs.2	+	14	2330	c.2042C>G	c.(2041-2043)TCT>TGT	p.S681C	SEC24A_uc011cxu.1_Missense_Mutation_p.S445C	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	681					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTGGACTGTTCTGGTCAGCAA	0.328		NaN											0	0	0	0.003163	0	12	89									
MATR3	9782	broad.mit.edu	37	5	138643642	138643642	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:138643642G>A	uc003ldu.2	+	5	965	c.538G>A	c.(538-540)GAA>AAA	p.E180K	MATR3_uc003lds.2_Missense_Mutation_p.E180K|MATR3_uc010jfb.2_Missense_Mutation_p.E180K|MATR3_uc003ldt.2_Intron|MATR3_uc003ldw.2_Missense_Mutation_p.E180K|MATR3_uc003ldx.2_Missense_Mutation_p.E180K|MATR3_uc010jfc.2_Missense_Mutation_p.E180K|MATR3_uc003ldy.2_Intron|MATR3_uc011czb.1_Intron|MATR3_uc003ldz.2_Missense_Mutation_p.E180K|MATR3_uc003lea.2_Missense_Mutation_p.E180K	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	180						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TGATTGGGAAGAAAAAAGGCA	0.453		NaN											0	0	0	0.00308	0	6	30									
PCDHB1	29930	broad.mit.edu	37	5	140432123	140432123	+	Silent	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:140432123C>A	uc003lik.1	+	1	1145	c.1068C>A	c.(1066-1068)CTC>CTA	p.L356L		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	356	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCAGCCCACTCCCTGAAGACT	0.537		NaN											1	0	4.3838e-07	0.001855	4.58548e-07	11	80									
PCDHB13	56123	broad.mit.edu	37	5	140594403	140594403	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:140594403C>T	uc003lja.1	+	1	895	c.708C>T	c.(706-708)GTC>GTT	p.V236V		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	236	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTGGATGTCAACGATAATG	0.532		NaN											0	0	0	0.004656	0	20	189									
PCDHGA4	56111	broad.mit.edu	37	5	140736611	140736611	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:140736611G>A	uc003ljq.1	+	1	1844	c.1844G>A	c.(1843-1845)GGA>GAA	p.G615E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.G615E	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	615	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGAGCCGGGACTATTTGCA	0.617		NaN											0	0	0	0.00499	0	14	68									
PCDHGB3	56102	broad.mit.edu	37	5	140750571	140750571	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:140750571G>A	uc003ljw.1	+	1	610	c.610G>A	c.(610-612)GAG>AAG	p.E204K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.E204K	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	204	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACAGGGAAGAGCAGCCACA	0.552		NaN											0	0	0	0.006214	0	10	48									
PCDHGA6	56109	broad.mit.edu	37	5	140753992	140753992	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:140753992G>A	uc003ljy.1	+	1	342	c.342G>A	c.(340-342)CTG>CTA	p.L114L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.L114L	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	114	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGATAAACTGAATCTTTATC	0.483		NaN											0	0	0	0.008871	0	16	70									
PCDHGB5	56101	broad.mit.edu	37	5	140779098	140779098	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:140779098G>A	uc003lkf.1	+	1	1404	c.1404G>A	c.(1402-1404)GCG>GCA	p.A468A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.A468A	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	468	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCCATCGCGCAAGTCTGCG	0.567		NaN											0	0	0	0.000602	0	4	37									
PCDH12	51294	broad.mit.edu	37	5	141325351	141325351	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:141325351C>T	uc003llx.2	-	4	4361	c.3150G>A	c.(3148-3150)CTG>CTA	p.L1050L		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	1050	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGGGCGCTCAGCCGGTCCA	0.677		NaN											0	0	0	0.007413	0	16	116									
FGF1	2246	broad.mit.edu	37	5	141974881	141974881	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:141974881G>A	uc003lmm.2	-	4	522	c.442C>T	c.(442-444)CTC>TTC	p.L148F	FGF1_uc011dbi.1_3'UTR|FGF1_uc003lmn.3_Missense_Mutation_p.L148F|FGF1_uc003lmp.3_3'UTR|FGF1_uc003lmq.2_Missense_Mutation_p.L148F|FGF1_uc010jgj.2_Missense_Mutation_p.L147F|FGF1_uc003lmr.2_Missense_Mutation_p.L148F|FGF1_uc003lms.3_Missense_Mutation_p.L148F	NM_001144892	NP_001138364	P05230	FGF1_HUMAN	fibroblast growth factor 1 (acidic) isoform 1	148					angiogenesis|cellular response to heat|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cell migration|positive regulation of cholesterol biosynthetic process|positive regulation of intracellular protein kinase cascade|positive regulation of transcription from RNA polymerase II promoter	cell cortex|cytosol|extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|S100 alpha binding				0		all_neural(839;0.0416)|Ovarian(839;0.0955)|all_hematologic(541;0.1)|Prostate(461;0.157)|Lung NSC(810;0.21)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00032)	Pentosan Polysulfate(DB00686)	GGCAGGGGGAGAAACAAGATT	0.493		NaN											0	0	0	0.008291	0	7	37									
SH3TC2	79628	broad.mit.edu	37	5	148411215	148411215	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:148411215C>T	uc003lpu.2	-	9	1189	c.1037G>A	c.(1036-1038)AGA>AAA	p.R346K	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_5'UTR|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.R339K|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Missense_Mutation_p.R231K	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	346							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGGAGCATCTCTCCTCATC	0.522		NaN											0	0	0	0.001368	0	10	52									
TCOF1	6949	broad.mit.edu	37	5	149754546	149754546	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:149754546C>T	uc003lry.2	+	10	1416	c.1308C>T	c.(1306-1308)GTC>GTT	p.V436V	TCOF1_uc003lrw.2_Silent_p.V436V|TCOF1_uc011dch.1_Silent_p.V436V|TCOF1_uc003lrz.2_Silent_p.V436V|TCOF1_uc003lrx.2_Silent_p.V359V|TCOF1_uc003lsa.2_Silent_p.V359V|TCOF1_uc011dci.1_5'Flank	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	436					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCCCCAGGTCAGAGCCGCCT	0.662		NaN											0	0	0	0.001168	0	5	31									
DCTN4	51164	broad.mit.edu	37	5	150110697	150110697	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:150110697C>T	uc003lsv.2	-	7	735	c.633G>A	c.(631-633)CAG>CAA	p.Q211Q	DCTN4_uc003lsu.2_Silent_p.Q154Q|DCTN4_uc010jhi.2_Silent_p.Q218Q|DCTN4_uc010jhj.2_RNA	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	211						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTATCTCTTTCTGATCCTCTC	0.343		NaN											0	0	0	0.004482	0	8	33									
FAT2	2196	broad.mit.edu	37	5	150947809	150947809	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:150947809C>T	uc003lue.3	-	1	697	c.684G>A	c.(682-684)CGG>CGA	p.R228R	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.R228R	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	228	Cadherin 2.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGAGATTTTCCGCATGCGGT	0.597		NaN											0	0	0	0.004482	0	8	34									
GEMIN5	25929	broad.mit.edu	37	5	154308188	154308188	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:154308188C>T	uc003lvx.3	-	6	896	c.813G>A	c.(811-813)AAG>AAA	p.K271K	GEMIN5_uc011ddk.1_Silent_p.K270K	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	271					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CTCCTCTTCTCTTCAGAAAGG	0.473		NaN											0	0	0	0.001855	0	11	63									
GABRP	2568	broad.mit.edu	37	5	170222427	170222427	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:170222427C>G	uc003mau.2	+	5	654	c.456C>G	c.(454-456)CTC>CTG	p.L152L	GABRP_uc011dev.1_Silent_p.L152L	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	152	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGTATGCCCTCAGGTACGCGG	0.532		NaN											0	0	0	0.004482	0	9	79									
BOD1	91272	broad.mit.edu	37	5	173040145	173040145	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:173040145C>T	uc003mcq.2	-	2	578	c.351G>A	c.(349-351)CAG>CAA	p.Q117Q	BOD1_uc003mcr.2_Silent_p.Q117Q	NM_138369	NP_612378	Q96IK1	BOD1_HUMAN	biorientation of chromosomes in cell division 1	117					cell division|mitosis	condensed chromosome kinetochore|microtubule organizing center				ovary(2)	2						GAACCACACTCTGCCTCAGAC	0.423		NaN											0	0	0	0.003954	0	22	166									
RAB24	53917	broad.mit.edu	37	5	176730193	176730193	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr5:176730193G>C	uc003mfv.2	-	2	466	c.97C>G	c.(97-99)CTG>GTG	p.L33V	RAB24_uc003mfu.2_5'UTR|RAB24_uc003mfw.2_Missense_Mutation_p.L33V|PRELID1_uc003mfx.2_5'Flank|PRELID1_uc003mfy.2_5'Flank	NM_130781	NP_570137	Q969Q5	RAB24_HUMAN	RAB24 gene product	33					autophagy|protein transport|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|protein binding				0	all_cancers(89;2.49e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCCCACCAGAAAGCGGTCG	0.647		NaN											0	0	0	0.009535	0	25	156									
FOXQ1	94234	broad.mit.edu	37	6	1313343	1313343	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	RNASeq			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:1313343C>T	uc003mtl.3	+	1	669	c.404C>T	c.(403-405)TCG>TTG	p.S135L		NM_033260	NP_150285	Q9C009	FOXQ1_HUMAN	forkhead box Q1	135	Fork-head.				DNA fragmentation involved in apoptotic nuclear change|embryo development|hair follicle morphogenesis|pattern specification process|positive regulation of caspase activity|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	caspase regulator activity|DNA bending activity|double-stranded DNA binding|estrogen receptor binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|ubiquitin conjugating enzyme binding				0	Ovarian(93;0.0733)	Breast(5;0.052)|all_lung(73;0.0713)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.0954)|BRCA - Breast invasive adenocarcinoma(62;0.18)		ATCCGCGACTCGGCGGGCGGG	0.592		NaN											0	0	0	0.006214	0	7	71									
SLC22A23	63027	broad.mit.edu	37	6	3285315	3285315	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:3285315G>C	uc003mvm.3	-	8	1577	c.1577C>G	c.(1576-1578)TCA>TGA	p.S526*	uc003mvi.1_Intron|SLC22A23_uc003mvn.3_Nonsense_Mutation_p.S245*|SLC22A23_uc003mvo.3_Nonsense_Mutation_p.S245*|SLC22A23_uc003mvp.1_RNA|SLC22A23_uc010jnn.2_Nonsense_Mutation_p.S526*	NM_015482	NP_056297	A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23 isoform a	526					ion transport	integral to membrane	transmembrane transporter activity			ovary(1)	1	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				GGACTCACCTGAGTCTGGGTG	0.527		NaN											0	0	0	0.009096	0	3	32									
SYCP2L	221711	broad.mit.edu	37	6	10911094	10911094	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:10911094G>A	uc003mzo.2	+	12	1206	c.910G>A	c.(910-912)GAG>AAG	p.E304K	SYCP2L_uc011din.1_Missense_Mutation_p.E145K|SYCP2L_uc010jow.2_Intron	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	304						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TTTTGCTGATGAGCATGAGGT	0.403		NaN											0	0	0	0.00632	0	20	303									
NEDD9	4739	broad.mit.edu	37	6	11190713	11190713	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:11190713G>C	uc003mzv.2	-	5	1556	c.1389C>G	c.(1387-1389)CTC>CTG	p.L463L	NEDD9_uc010joz.2_Silent_p.L463L|NEDD9_uc003mzw.3_Silent_p.L317L	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	463					actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			TGACAAAGTGGAGGTACTCCT	0.522		NaN											0	0	0	0.001984	0	5	67									
JARID2	3720	broad.mit.edu	37	6	15512483	15512483	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:15512483G>C	uc003nbj.2	+	14	3241	c.2997G>C	c.(2995-2997)AGG>AGC	p.R999S	JARID2_uc011div.1_Missense_Mutation_p.R827S	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	999	JmjC.				central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				AGGTGCACAGGACCGTGCAGC	0.607		NaN											0	0	0	0.001368	0	12	87									
FAM8A1	51439	broad.mit.edu	37	6	17600696	17600696	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:17600696G>A	uc003ncc.2	+	1	179	c.56G>A	c.(55-57)GGA>GAA	p.G19E		NM_016255	NP_057339	Q9UBU6	FA8A1_HUMAN	family with sequence similarity 8, member A1	19						integral to membrane					0	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.143)	all cancers(50;0.176)|Epithelial(50;0.204)			GACGATGGCGGAGGGGACCAC	0.736		NaN											0	0	0	0.008291	0	10	14									
NUP153	9972	broad.mit.edu	37	6	17675981	17675981	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:17675981C>T	uc003ncd.1	-	3	555	c.355G>A	c.(355-357)GCT>ACT	p.A119T	NUP153_uc011dje.1_Missense_Mutation_p.A119T|NUP153_uc010jpl.1_Missense_Mutation_p.A119T	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	119					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			TAATTTGAAGCAGTACTAGTT	0.358		NaN											0	0	0	0.000602	0	5	69									
FAM65B	9750	broad.mit.edu	37	6	24865637	24865637	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:24865637G>C	uc003neo.1	-	7	632	c.456C>G	c.(454-456)CTC>CTG	p.L152L	FAM65B_uc011djs.1_Silent_p.L181L|FAM65B_uc011dju.1_Silent_p.L186L|FAM65B_uc003nep.2_Silent_p.L152L|FAM65B_uc011djt.1_Silent_p.L152L	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	152					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						CACCATCCTGGAGGCGTCGCT	0.468		NaN											0	0	0	0.000602	0	5	55									
FAM65B	9750	broad.mit.edu	37	6	24873898	24873898	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:24873898G>C	uc003neo.1	-	3	407	c.231C>G	c.(229-231)GTC>GTG	p.V77V	FAM65B_uc011djs.1_Silent_p.V106V|FAM65B_uc011dju.1_Silent_p.V111V|FAM65B_uc003nep.2_Silent_p.V77V|FAM65B_uc011djt.1_Silent_p.V77V	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	77	Involved in cell filopodia formation.				cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						AGGCCCTGTAGACTTCTTCCA	0.438		NaN											0	0	0	0.001368	0	9	68									
LRRC16A	55604	broad.mit.edu	37	6	25466165	25466165	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:25466165G>A	uc011djw.1	+	9	1055	c.679G>A	c.(679-681)GAT>AAT	p.D227N	LRRC16A_uc010jpx.2_Missense_Mutation_p.D227N|LRRC16A_uc010jpy.2_Missense_Mutation_p.D227N|LRRC16A_uc003nez.1_Missense_Mutation_p.D66N	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	227					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						GTCCTCTAAGGATCTAAAACT	0.363		NaN											0	0	0	0.008871	0	19	171									
TRIM38	10475	broad.mit.edu	37	6	25967132	25967132	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:25967132C>T	uc003nfm.2	+	3	817	c.382C>T	c.(382-384)CTT>TTT	p.L128F	TRIM38_uc003nfn.2_Missense_Mutation_p.L128F	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	128	B box-type.				positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						CACCACAGCTCTTGTTGAAGA	0.572		NaN											0	0	0	0.010504	0	17	132									
HIST1H1C	3006	broad.mit.edu	37	6	26056380	26056380	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:26056380G>A	uc003nfw.2	-	1	320	c.277C>T	c.(277-279)CTG>TTG	p.L93L		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	93	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						GTTTGCACCAGAGTGCCCTTG	0.547		NaN											0	0	0	0.010729	0	11	105									
HIST1H2AD	3013	broad.mit.edu	37	6	26199108	26199108	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:26199108C>T	uc003ngw.2	-	1	364	c.364G>A	c.(364-366)GAG>AAG	p.E122K	HIST1H3D_uc003ngv.2_5'UTR|HIST1H2BF_uc003ngx.2_5'Flank	NM_021065	NP_066409	P20671	H2A1D_HUMAN	histone cluster 1, H2ad	122					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.196)				TGGTGACTCTCAGTCTTCTTG	0.488		NaN											0	0	0	0.00245	0	11	100									
HIST1H2AD	3013	broad.mit.edu	37	6	26199439	26199439	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:26199439G>A	uc003ngw.2	-	1	33	c.33C>T	c.(31-33)GCC>GCT	p.A11A	HIST1H3D_uc003ngv.2_5'UTR|HIST1H2BF_uc003ngx.2_5'Flank	NM_021065	NP_066409	P20671	H2A1D_HUMAN	histone cluster 1, H2ad	11					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.196)				CCTTAGCTCGGGCCTTTCCGC	0.527		NaN											0	0	0	0.009096	0	4	38									
BTN3A1	11119	broad.mit.edu	37	6	26407997	26407997	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:26407997C>A	uc003nhv.2	+	4	900	c.532C>A	c.(532-534)CAG>AAG	p.Q178K	BTN3A1_uc011dkj.1_Missense_Mutation_p.Q178K|BTN3A1_uc011dkk.1_Intron|BTN3A1_uc010jqj.2_Missense_Mutation_p.Q178K	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	178	Ig-like V-type 2.|Extracellular (Potential).				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						ACCCCAAATACAGTGGAGCAA	0.537		NaN											1	0	8.58068e-18	0.007291	9.24403e-18	25	119									
BTN3A1	11119	broad.mit.edu	37	6	26411782	26411782	+	Splice_Site	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:26411782G>A	uc003nhv.2	+	9	1360	c.992_splice	c.e9-1	p.E331_splice	BTN3A1_uc011dkj.1_Splice_Site_p.E331_splice|BTN3A1_uc011dkk.1_Splice_Site_p.E279_splice|BTN3A1_uc010jqj.2_Splice_Site_p.E331_splice	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a						lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTTCCTTTCAGAATGGAAAAA	0.438		NaN											0	0	0	0.004007	0	13	61									
HIST1H2AM	8336	broad.mit.edu	37	6	27860615	27860615	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:27860615G>A	uc003nkb.1	-	1	349	c.313C>T	c.(313-315)CAG>TAG	p.Q105*	HIST1H3J_uc003nka.2_5'Flank|HIST1H2BO_uc003nkc.1_5'Flank	NM_003514	NP_003505	P0C0S8	H2A1_HUMAN	histone cluster 1, H2am	105					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding			ovary(2)	2						ACACCGCCCTGAGCGATGGTA	0.542		NaN											0	0	0	0.004878	0	35	209									
ZNF165	7718	broad.mit.edu	37	6	28056346	28056346	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:28056346G>C	uc003nkg.2	+	5	1640	c.556G>C	c.(556-558)GAG>CAG	p.E186Q	ZNF165_uc003nkh.2_Missense_Mutation_p.E186Q|ZNF165_uc003nki.3_Missense_Mutation_p.E186Q|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	186					viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TTTAGATAATGAGAGTGAAAA	0.318		NaN											0	0	0	0.009096	0	3	30									
ZNF165	7718	broad.mit.edu	37	6	28056916	28056916	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:28056916G>A	uc003nkg.2	+	5	2210	c.1126G>A	c.(1126-1128)GAA>AAA	p.E376K	ZNF165_uc003nkh.2_Missense_Mutation_p.E376K|ZNF165_uc003nki.3_Missense_Mutation_p.E376K|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	376	C2H2-type 3.				viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TGAATGTAATGAATGTGGGAA	0.443		NaN											0	0	0	0.006214	0	6	70									
MAS1L	116511	broad.mit.edu	37	6	29454596	29454596	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:29454596G>A	uc011dlq.1	-	1	1084	c.1084C>T	c.(1084-1086)CAG>TAG	p.Q362*		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	362	Cytoplasmic (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						TCCACATGCTGAGTAGAGTGT	0.517		NaN											0	0	0	0.012319	0	16	100									
OR2H2	7932	broad.mit.edu	37	6	29556417	29556417	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:29556417G>A	uc003nmr.1	+	1	735	c.696G>A	c.(694-696)CGG>CGA	p.R232R	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	232	Cytoplasmic (Potential).			KGR -> TAW (in Ref. 1; AAB36567).	defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAAAAGGGCGGAGGAAAGCTT	0.527		NaN											0	0	0	0.001368	0	12	98									
RNF39	80352	broad.mit.edu	37	6	30043525	30043525	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:30043525C>G	uc003npe.2	-	1	104	c.42G>C	c.(40-42)AAG>AAC	p.K14N	RNF39_uc003npd.2_Missense_Mutation_p.K14N	NM_025236	NP_079512	Q9H2S5	RNF39_HUMAN	ring finger protein 39 isoform 1	14						cytoplasm	zinc ion binding				0						TTGCCTCTCTCTTCAACCAGA	0.577		NaN											0	0	0	0.001368	0	11	117									
TRIM15	89870	broad.mit.edu	37	6	30131831	30131831	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:30131831C>T	uc010jrx.2	+	1	849	c.370C>T	c.(370-372)CAG>TAG	p.Q124*		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	124					mesodermal cell fate determination	intracellular	zinc ion binding				0						CGAGGCCATTCAGCCCTACCG	0.577		NaN											0	0	0	0.010504	0	14	96									
GTF2H4	2968	broad.mit.edu	37	6	30881724	30881724	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:30881724C>T	uc003nsa.1	+	14	1560	c.1353C>T	c.(1351-1353)GTC>GTT	p.V451V	GTF2H4_uc003nsb.1_Silent_p.V289V|VARS2_uc003nsc.1_5'Flank|VARS2_uc003nsd.2_5'Flank|VARS2_uc011dmx.1_5'Flank|VARS2_uc011dmy.1_5'Flank|VARS2_uc011dmz.1_5'Flank|VARS2_uc011dna.1_5'Flank|VARS2_uc011dnb.1_5'Flank|VARS2_uc011dnc.1_5'Flank	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	451					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						ACAGCGACGTCAAGCGCTTTT	0.677		NaN						NER					0	0	0	0.004482	0	7	44									
CCHCR1	54535	broad.mit.edu	37	6	31110790	31110790	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:31110790G>A	uc003nsr.3	-	17	2297	c.2174C>T	c.(2173-2175)TCA>TTA	p.S725L	CCHCR1_uc011dne.1_Missense_Mutation_p.S711L|CCHCR1_uc003nsq.3_Missense_Mutation_p.S778L|CCHCR1_uc003nsp.3_Missense_Mutation_p.S814L	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	725					cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						TGCAGATGCTGAACACTCTGG	0.547		NaN											0	0	0	0.00623	0	32	353									
C6orf26	401251	broad.mit.edu	37	6	31731217	31731217	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:31731217G>A	uc003nxa.3	+	2	199	c.140G>A	c.(139-141)AGA>AAA	p.R47K	MSH5_uc003nwz.3_RNA	NM_001039651	NP_001034740	Q5SSQ6	G7D_HUMAN	hypothetical protein LOC401251	47											0						GCTCTGGAGAGAGAACAGGAT	0.592		NaN											0	0	0	0.001368	0	10	88									
CYP21A2	1589	broad.mit.edu	37	6	32008204	32008204	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:32008204G>A	uc003nze.1	+	8	1079	c.961G>A	c.(961-963)GAG>AAG	p.E321K	CYP21A2_uc003nzf.1_Missense_Mutation_p.E291K	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	320			E -> K (in AH3; simple virilizing form; 4% activity).		glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						ACTGCAGGAGGAGCTAGACCA	0.662		NaN											0	0	0	0.004482	0	7	43									
TNXB	7148	broad.mit.edu	37	6	32053680	32053680	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:32053680C>T	uc003nzl.2	-	7	3197	c.2995G>A	c.(2995-2997)GAG>AAG	p.E999K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1086	Fibronectin type-III 3.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCCGGCCCCTCGGGCACCCGC	0.662		NaN											0	0	0	0.004878	0	26	185									
AGER	177	broad.mit.edu	37	6	32150064	32150064	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:32150064G>A	uc003oal.1	-	8	948	c.924C>T	c.(922-924)CAC>CAT	p.H308H	AGER_uc003oak.1_Silent_p.H37H|AGER_uc003oar.2_Silent_p.H207H|AGER_uc011dpm.1_Silent_p.H207H|AGER_uc011dpn.1_Missense_Mutation_p.T190M|AGER_uc010jtv.1_Intron|AGER_uc011dpo.1_Intron|AGER_uc003oam.1_RNA|AGER_uc003oan.1_Intron|AGER_uc003oap.1_Silent_p.H324H|AGER_uc003oat.1_Silent_p.H324H|AGER_uc003oao.1_RNA|AGER_uc003oaq.1_Silent_p.H294H|AGER_uc010jtw.1_Intron|AGER_uc003oas.1_Missense_Mutation_p.T291M|AGER_uc003oau.1_Silent_p.H308H|AGER_uc011dpp.1_Silent_p.H308H	NM_001136	NP_001127	Q15109	RAGE_HUMAN	advanced glycosylation end product-specific	308	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|inflammatory response|innate immune response|neuron projection development|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	S100 alpha binding|transmembrane receptor activity			breast(1)	1						CCTGGGGCCCGTGGCTGGAAT	0.637		NaN											0	0	0	0.00361	0	65	98									
BRD2	6046	broad.mit.edu	37	6	32945290	32945290	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:32945290C>G	uc003ocn.3	+	8	2973	c.1272C>G	c.(1270-1272)AAC>AAG	p.N424K	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Missense_Mutation_p.N424K|BRD2_uc003ocp.3_Missense_Mutation_p.N304K|BRD2_uc010juh.2_Missense_Mutation_p.N424K	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	424	Bromo 2.				spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						TGTTCTCCAACTGCTATAAGT	0.488		NaN											0	0	0	0.005524	0	31	221									
RPS18	6222	broad.mit.edu	37	6	33244179	33244179	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:33244179G>A	uc003odp.1	+	6	440	c.395G>A	c.(394-396)CGA>CAA	p.R132Q	RPS18_uc010jum.1_RNA|RPS18_uc003odq.1_RNA|B3GALT4_uc003odr.2_5'Flank	NM_022551	NP_072045	P62269	RS18_HUMAN	ribosomal protein S18	132					endocrine pancreas development|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	rRNA binding|structural constituent of ribosome				0						CTTCGTGTCCGAGGCCAGCAC	0.493		NaN											0	0	0	0.001984	0	5	33									
GRM4	2914	broad.mit.edu	37	6	34101145	34101145	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:34101145G>A	uc003oir.3	-	1	299	c.129C>T	c.(127-129)ATC>ATT	p.I43I	GRM4_uc011dsn.1_Silent_p.I43I|GRM4_uc010jvh.2_Silent_p.I43I|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_Intron	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	43	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CATCTATGCGGATGGAATTCA	0.617		NaN											0	0	0	0.004482	0	5	86									
SNRPC	6631	broad.mit.edu	37	6	34741334	34741334	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:34741334G>A	uc003ojt.1	+	6	482	c.467G>A	c.(466-468)CGA>CAA	p.R156Q		NM_003093	NP_003084	P09234	RU1C_HUMAN	small nuclear ribonucleoprotein polypeptide C	156					spliceosomal snRNP assembly	Cajal body|U1 snRNP	protein homodimerization activity|single-stranded RNA binding|zinc ion binding			pancreas(1)	1						GGAATGACTCGACCAGACAGA	0.537		NaN											0	0	0	0.010729	0	9	115									
SCUBE3	222663	broad.mit.edu	37	6	35216389	35216389	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:35216389C>T	uc003okf.1	+	22	2895	c.2889C>T	c.(2887-2889)TTC>TTT	p.F963F	SCUBE3_uc003okg.1_Silent_p.F962F|SCUBE3_uc003okh.1_Silent_p.F850F	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	963					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						AGAACTACTTCAAGTACACAG	0.522		NaN											0	0	0	0.007413	0	18	115									
SCUBE3	222663	broad.mit.edu	37	6	35216431	35216431	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:35216431C>A	uc003okf.1	+	22	2937	c.2931C>A	c.(2929-2931)TTC>TTA	p.F977L	SCUBE3_uc003okg.1_Missense_Mutation_p.F976L|SCUBE3_uc003okh.1_Missense_Mutation_p.F864L	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	977					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CAAAATCCTTCATCAAGCTGC	0.493		NaN											1	0	1.5739e-10	0.004007	1.66784e-10	16	89									
C6orf81	221481	broad.mit.edu	37	6	35706280	35706280	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:35706280C>T	uc003ola.2	+	3	537	c.510C>T	c.(508-510)TTC>TTT	p.F170F	LOC285847_uc010jvy.1_5'Flank|C6orf81_uc003olb.1_Silent_p.F143F	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	143							binding			ovary(1)	1						TCAGAAAATTCAGGCTCAAAA	0.458		NaN											0	0	0	0.001368	0	9	97									
RNF8	9025	broad.mit.edu	37	6	37328321	37328321	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:37328321G>A	uc003onq.3	+	2	404	c.211G>A	c.(211-213)GAG>AAG	p.E71K	RNF8_uc003onr.3_Missense_Mutation_p.E71K|RNF8_uc011dtx.1_5'UTR	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1	71	FHA.				cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						GCAGAATCCTGAGGGCCAATG	0.373		NaN											0	0	0	0.006214	0	9	62									
FTSJD2	23070	broad.mit.edu	37	6	37426534	37426534	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:37426534C>T	uc003ons.2	+	9	1177	c.924C>T	c.(922-924)TTC>TTT	p.F308F	FTSJD2_uc010jwu.2_Silent_p.F252F	NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	308					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CTAATGACTTCAAGCTGGAGG	0.522		NaN											0	0	0	0.008291	0	9	119									
TFEB	7942	broad.mit.edu	37	6	41655745	41655745	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:41655745G>T	uc003oqs.1	-	6	873	c.571C>A	c.(571-573)CTG>ATG	p.L191M	TFEB_uc003oqt.1_Missense_Mutation_p.L191M|TFEB_uc003oqu.1_Missense_Mutation_p.L205M|TFEB_uc003oqv.1_Missense_Mutation_p.L191M|TFEB_uc010jxo.1_Missense_Mutation_p.L191M|TFEB_uc003oqr.1_Missense_Mutation_p.L106M	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	191					embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			TACACATTCAGGTGGCTGCTG	0.657		NaN	T	ALPHA	renal (childhood epithelioid)								1	0	1.06801e-11	0.009535	1.13641e-11	30	153									
TAF8	129685	broad.mit.edu	37	6	42034150	42034150	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:42034150C>G	uc003ors.2	+	6	619	c.590C>G	c.(589-591)ACA>AGA	p.T197R	TAF8_uc003ort.2_Missense_Mutation_p.T197R|TAF8_uc003oru.1_Missense_Mutation_p.T197R|TAF8_uc003orv.1_Missense_Mutation_p.T197R|TAF8_uc011dun.1_Missense_Mutation_p.T134R	NM_138572	NP_612639	Q7Z7C8	TAF8_HUMAN	TBP-associated factor 8	197					cell differentiation|maintenance of protein location in nucleus|positive regulation of transcription, DNA-dependent|regulation of fat cell differentiation|transcription, DNA-dependent	perinuclear region of cytoplasm|transcription factor TFIID complex	DNA binding|protein binding			ovary(1)	1	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00179)			ATGGCCAAGACAGGCGAGACT	0.537		NaN											0	0	0	0.004007	0	15	80									
TRERF1	55809	broad.mit.edu	37	6	42236470	42236470	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:42236470C>G	uc003osd.2	-	5	1422	c.859G>C	c.(859-861)GAA>CAA	p.E287Q	TRERF1_uc011duq.1_Missense_Mutation_p.E287Q|TRERF1_uc003osb.2_Missense_Mutation_p.E126Q|TRERF1_uc003osc.2_Missense_Mutation_p.E126Q|TRERF1_uc003ose.2_Missense_Mutation_p.E287Q	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	287	Gln-rich.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GTCTGTATTTCTTGCATGGAG	0.453		NaN											0	0	0	0.007835	0	32	223									
YIPF3	25844	broad.mit.edu	37	6	43481347	43481347	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:43481347G>C	uc003ovl.1	-	4	577	c.420C>G	c.(418-420)ATC>ATG	p.I140M	C6orf154_uc003ovk.1_5'Flank|YIPF3_uc011dvk.1_Missense_Mutation_p.I105M|YIPF3_uc010jyr.1_Missense_Mutation_p.I146M|YIPF3_uc010jys.1_Intron|YIPF3_uc003ovm.1_Missense_Mutation_p.I14M|YIPF3_uc010jyt.1_Intron	NM_015388	NP_056203	Q9GZM5	YIPF3_HUMAN	natural killer cell-specific antigen KLIP1	140					cell differentiation	integral to membrane|plasma membrane|transport vesicle					0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			TGACCATCTTGATAGGGATCA	0.458		NaN											0	0	0	0.009096	0	4	95									
NFKBIE	4794	broad.mit.edu	37	6	44227806	44227806	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:44227806C>T	uc003oxe.1	-	5	1436	c.1411G>A	c.(1411-1413)GAG>AAG	p.E471K	SLC35B2_uc003oxd.2_5'Flank|SLC35B2_uc011dvt.1_5'Flank|SLC35B2_uc011dvu.1_5'Flank	NM_004556	NP_004547	O00221	IKBE_HUMAN	nuclear factor of kappa light polypeptide gene	471					cytoplasmic sequestering of transcription factor		protein binding			breast(2)	2	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TGGGGCGTCTCATCCTCCACA	0.567		NaN											0	0	0	0.008871	0	16	103									
GPR116	221395	broad.mit.edu	37	6	46851331	46851331	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:46851331G>A	uc003oyo.3	-	6	866	c.577C>T	c.(577-579)CTC>TTC	p.L193F	GPR116_uc003oyp.3_Missense_Mutation_p.L193F|GPR116_uc003oyq.3_Missense_Mutation_p.L193F|GPR116_uc003oyr.2_Missense_Mutation_p.L193F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	193	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GACCTATAGAGGGCGGAGGAA	0.428		NaN											0	0	0	0.00308	0	6	36									
TFAP2B	7021	broad.mit.edu	37	6	50805697	50805697	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:50805697G>A	uc003pag.2	+	5	997	c.831G>A	c.(829-831)TCG>TCA	p.S277S		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	277					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					GAGCCAAATCGAAAAATGGGG	0.433		NaN											0	0	0	0.00308	0	7	85									
DST	667	broad.mit.edu	37	6	56464987	56464987	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:56464987C>G	uc003pdf.2	-	39	5245	c.5217G>C	c.(5215-5217)GAG>GAC	p.E1739D	DST_uc003pcz.3_Missense_Mutation_p.E1561D|DST_uc011dxj.1_Missense_Mutation_p.E1590D|DST_uc011dxk.1_Missense_Mutation_p.E1601D|DST_uc003pcy.3_Missense_Mutation_p.E1235D|DST_uc010kaa.1_5'Flank	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	3647					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CTTGGAGTTTCTCTTTATACT	0.403		NaN											0	0	0	0.00308	0	8	22									
DST	667	broad.mit.edu	37	6	56479189	56479189	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:56479189C>G	uc003pdf.2	-	36	4952	c.4924G>C	c.(4924-4926)GAG>CAG	p.E1642Q	DST_uc003pcz.3_Missense_Mutation_p.E1464Q|DST_uc011dxj.1_Missense_Mutation_p.E1493Q|DST_uc011dxk.1_Missense_Mutation_p.E1504Q|DST_uc003pcy.3_Missense_Mutation_p.E1138Q|DST_uc003pdb.2_Missense_Mutation_p.E1138Q	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	3540					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CCAGCCTTCTCTGCATCTTTC	0.373		NaN											0	0	0	0.009096	0	4	13									
KCNQ5	56479	broad.mit.edu	37	6	73843259	73843259	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:73843259G>T	uc003pgk.2	+	10	1710	c.1363G>T	c.(1363-1365)GAG>TAG	p.E455*	KCNQ5_uc011dyh.1_Nonsense_Mutation_p.E474*|KCNQ5_uc011dyi.1_Nonsense_Mutation_p.E465*|KCNQ5_uc010kat.2_Nonsense_Mutation_p.E446*|KCNQ5_uc011dyj.1_Intron|KCNQ5_uc011dyk.1_Nonsense_Mutation_p.E205*	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	455					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CATCACAGCCGAGGGCAGTCC	0.592		NaN											1	0	0.00621372	0.006214	0.00633594	9	106									
DOPEY1	23033	broad.mit.edu	37	6	83841961	83841961	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:83841961G>C	uc003pjs.1	+	18	2943	c.2683G>C	c.(2683-2685)GAA>CAA	p.E895Q	DOPEY1_uc011dyy.1_Missense_Mutation_p.E886Q|DOPEY1_uc010kbl.1_Missense_Mutation_p.E886Q	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	895					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		GAAGAGTGTGGAACTATTTTA	0.368		NaN											0	0	0	0.008291	0	9	57									
SNX14	57231	broad.mit.edu	37	6	86256945	86256945	+	Splice_Site	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:86256945C>G	uc003pkr.2	-	12	1187	c.994_splice	c.e12-1	p.V332_splice	SNX14_uc003pkp.2_Splice_Site_p.V195_splice|SNX14_uc003pkq.2_Splice_Site|SNX14_uc011dzg.1_Splice_Site_p.V280_splice|SNX14_uc003pks.2_Splice_Site_p.V288_splice|SNX14_uc003pkt.2_Splice_Site_p.V332_splice	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a						cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		ACTTCAGCACCTTGATATAAG	0.318		NaN											0	0	0	0.004672	0	3	18									
ZNF292	23036	broad.mit.edu	37	6	87969858	87969858	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:87969858G>C	uc003plm.3	+	8	6552	c.6511G>C	c.(6511-6513)GAA>CAA	p.E2171Q		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AACTTTGAAAGAATTTCGATG	0.368		NaN											0	0	0	0.001168	0	5	38									
NR2E1	7101	broad.mit.edu	37	6	108496093	108496093	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:108496093G>A	uc003psg.2	+	3	980	c.225G>A	c.(223-225)CTG>CTA	p.L75L		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	75	Nuclear receptor.|NR C4-type.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		CGTGTCGGCTGAAGAAGTGTT	0.483		NaN											0	0	0	0.00333	0	18	86									
LAMA4	3910	broad.mit.edu	37	6	112476811	112476811	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:112476811C>T	uc003pvu.2	-	15	2224	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	LAMA4_uc003pvv.2_Missense_Mutation_p.E632K|LAMA4_uc003pvt.2_Missense_Mutation_p.E632K	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	639	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TCTGCTGTTTCATTGGCTTCA	0.388		NaN											0	0	0	0.002299	0	18	91									
HDAC2	3066	broad.mit.edu	37	6	114274470	114274470	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:114274470C>T	uc003pwd.1	-	6	892	c.892G>A	c.(892-894)GAA>AAA	p.E298K	HDAC2_uc003pwc.1_Missense_Mutation_p.E174K|HDAC2_uc003pwe.1_Missense_Mutation_p.E174K	NM_001527	NP_001518	Q92769	HDAC2_HUMAN	histone deacetylase 2	204	Histone deacetylase.				blood coagulation|dendrite development|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|maintenance of chromatin silencing|negative regulation of apoptosis|negative regulation of cell cycle|negative regulation of neuron projection development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of proteolysis|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|ESC/E(Z) complex|NuRD complex|Sin3 complex	chromatin binding|enzyme binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|sequence-specific DNA binding|transcription factor binding			skin(2)|ovary(1)|central_nervous_system(1)	4		all_cancers(87;0.000629)|all_epithelial(87;0.00274)|Colorectal(196;0.0317)|all_lung(197;0.24)		all cancers(137;0.00318)|OV - Ovarian serous cystadenocarcinoma(136;0.00569)|Epithelial(106;0.0112)|GBM - Glioblastoma multiforme(226;0.0832)	Vorinostat(DB02546)	GGAAAGTATTCCCCATATTTA	0.348		NaN											0	0	0	0.008871	0	17	120									
RFX6	222546	broad.mit.edu	37	6	117245835	117245835	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:117245835C>G	uc003pxm.2	+	15	1622	c.1559C>G	c.(1558-1560)TCT>TGT	p.S520C		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	520					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AAACAAGGTTCTTTTCATTTG	0.393		NaN											0	0	0	0.001168	0	5	48									
PTPRK	5796	broad.mit.edu	37	6	128410865	128410865	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:128410865C>A	uc003qbk.2	-	8	1802	c.1435G>T	c.(1435-1437)GAA>TAA	p.E479*	PTPRK_uc003qbj.2_Nonsense_Mutation_p.E479*|PTPRK_uc010kfc.2_Nonsense_Mutation_p.E479*|PTPRK_uc011ebu.1_Nonsense_Mutation_p.E479*|PTPRK_uc003qbl.1_Nonsense_Mutation_p.E349*|PTPRK_uc011ebv.1_Nonsense_Mutation_p.E479*	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	479	Extracellular (Potential).|Fibronectin type-III 2.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ATTGTCTCTTCACTCTCCTTC	0.408		NaN											1	0	0.000151284	0.001855	0.000155607	10	104									
PTPRK	5796	broad.mit.edu	37	6	128505838	128505838	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:128505838G>A	uc003qbk.2	-	7	1268	c.901C>T	c.(901-903)CTT>TTT	p.L301F	PTPRK_uc003qbj.2_Missense_Mutation_p.L301F|PTPRK_uc010kfc.2_Missense_Mutation_p.L301F|PTPRK_uc011ebu.1_Missense_Mutation_p.L301F|PTPRK_uc003qbl.1_Missense_Mutation_p.L171F|PTPRK_uc011ebv.1_Missense_Mutation_p.L301F	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	301	Fibronectin type-III 1.|Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CCAACACCAAGAAGCTGAGGA	0.408		NaN											0	0	0	0.003163	0	11	23									
CTGF	1490	broad.mit.edu	37	6	132271489	132271489	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:132271489C>T	uc003qcz.2	-	3	690	c.484G>A	c.(484-486)GAG>AAG	p.E162K		NM_001901	NP_001892	P29279	CTGF_HUMAN	connective tissue growth factor precursor	162	VWFC.				cellular lipid metabolic process|DNA replication|epidermis development|regulation of cell growth|response to wounding	plasma membrane|proteinaceous extracellular matrix	heparin binding|insulin-like growth factor binding				0	Breast(56;0.0602)			GBM - Glioblastoma multiforme(226;0.015)|OV - Ovarian serous cystadenocarcinoma(155;0.0169)		ACCCACTCCTCGCAGCATTTC	0.652		NaN									OREG0017666	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.005524	0	35	213									
TAAR8	83551	broad.mit.edu	37	6	132874133	132874133	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:132874133C>T	uc011ecj.1	+	1	302	c.302C>T	c.(301-303)GCC>GTC	p.A101V		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	101	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		TATTTTGGAGCCAAATTTTGT	0.468		NaN											0	0	0	0.004482	0	9	55									
CCDC28A	25901	broad.mit.edu	37	6	139101069	139101069	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:139101069G>C	uc003qie.2	+	3	694	c.539G>C	c.(538-540)AGA>ACA	p.R180T		NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	180											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		GAGATGGAGAGAGGGCTGCTC	0.443		NaN											0	0	0	0.006122	0	12	60									
ECT2L	345930	broad.mit.edu	37	6	139186275	139186275	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:139186275C>T	uc003qif.1	+	10	1537	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	ECT2L_uc011edq.1_Silent_p.F409F	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	478					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						TGTATCCTTTCTTCAAGGAAC	0.443		NaN											0	0	0	0.000602	0	3	38									
TXLNB	167838	broad.mit.edu	37	6	139564283	139564283	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:139564283C>G	uc011eds.1	-	10	1600	c.1435G>C	c.(1435-1437)GAG>CAG	p.E479Q		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	479						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		ACGTTTGACTCTGGCTCTTCA	0.433		NaN											0	0	0	0.008871	0	14	78									
UTRN	7402	broad.mit.edu	37	6	144858794	144858794	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:144858794G>A	uc003qkt.2	+	43	6402	c.6310G>A	c.(6310-6312)GAG>AAG	p.E2104K		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2104					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		AACAAAGGCTGAGCATGCTAT	0.368		NaN											0	0	0	0.001168	0	4	42									
FBXO30	84085	broad.mit.edu	37	6	146127160	146127160	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:146127160C>G	uc003qla.2	-	2	581	c.382G>C	c.(382-384)GAC>CAC	p.D128H	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	128							ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		ATCCTTTGGTCTTGAAGAGCC	0.408		NaN											0	0	0	0.004482	0	8	33									
SYNE1	23345	broad.mit.edu	37	6	152651320	152651320	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:152651320G>A	uc010kiw.2	-	78	15102	c.14500C>T	c.(14500-14502)CGA>TGA	p.R4834*	SYNE1_uc003qot.3_Nonsense_Mutation_p.R4763*|SYNE1_uc003qou.3_Nonsense_Mutation_p.R4834*|SYNE1_uc010kiz.2_Nonsense_Mutation_p.R589*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4834	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATGGTTACTCGTTTCAGTACA	0.498		NaN								HNSCC(10;0.0054)			0	0	0	0.001368	0	9	39									
SYNE1	23345	broad.mit.edu	37	6	152651534	152651534	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:152651534C>T	uc010kiw.2	-	78	14888	c.14286G>A	c.(14284-14286)CTG>CTA	p.L4762L	SYNE1_uc003qot.3_Silent_p.L4691L|SYNE1_uc003qou.3_Silent_p.L4762L|SYNE1_uc010kiz.2_Silent_p.L517L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4762	Spectrin 14.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTGTCGCTTCAGCCTGTGAT	0.483		NaN								HNSCC(10;0.0054)			0	0	0	0.009096	0	4	61									
IGF2R	3482	broad.mit.edu	37	6	160477479	160477479	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:160477479C>G	uc003qta.2	+	20	2866	c.2718C>G	c.(2716-2718)CTC>CTG	p.L906L		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	906	6.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		TCTTTTCTCTCAACTGGGAGT	0.488		NaN											0	0	0	0.012319	0	19	137									
IGF2R	3482	broad.mit.edu	37	6	160479137	160479137	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:160479137G>C	uc003qta.2	+	21	3027	c.2879G>C	c.(2878-2880)GGC>GCC	p.G960A		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	960	7.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		AACGTCTCTGGCATTGGGAAG	0.418		NaN											0	0	0	0.001368	0	10	68									
T	6862	broad.mit.edu	37	6	166580899	166580899	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:166580899C>G	uc003quu.1	-	2	674	c.181G>C	c.(181-183)GAG>CAG	p.E61Q	T_uc003qut.1_Missense_Mutation_p.E61Q|T_uc003quv.1_Missense_Mutation_p.E61Q	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	61	T-box.				anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		ACGATCATCTCATTGGTGAGC	0.701		NaN							Chordoma_Familial_Clustering_of				0	0	0	0.010729	0	8	77									
ZFAND2A	90637	broad.mit.edu	37	7	1197336	1197336	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:1197336G>T	uc003skc.2	-	3	407	c.106C>A	c.(106-108)CAT>AAT	p.H36N	ZFAND2A_uc003skd.3_Missense_Mutation_p.H36N|uc003skf.1_5'Flank	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	36	AN1-type 1.					cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		TATGGAAAATGATCTTTACAG	0.328		NaN											1	0	1.55811e-20	0.008361	1.68276e-20	25	276									
INTS1	26173	broad.mit.edu	37	7	1515921	1515921	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:1515921C>G	uc003skn.2	-	38	5423	c.5322G>C	c.(5320-5322)GAG>GAC	p.E1774D	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1774					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TCCTGACACTCTCATCGTCCC	0.692		NaN											0	0	0	0.001984	0	5	23									
INTS1	26173	broad.mit.edu	37	7	1521036	1521036	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:1521036G>A	uc003skn.2	-	28	3893	c.3792C>T	c.(3790-3792)TTC>TTT	p.F1264F		NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1264					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CCTGGTCCAGGAACTGGAGGA	0.612		NaN											0	0	0	0.00308	0	7	107									
ACTB	60	broad.mit.edu	37	7	5569265	5569265	+	Silent	SNP	G	G	T	rs151181948		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:5569265G>T	uc003sos.3	-	1	60	c.24C>A	c.(22-24)CTC>CTA	p.L8L	ACTB_uc003sor.3_5'Flank|ACTB_uc003sot.3_Silent_p.L8L|ACTB_uc003soq.3_5'UTR|ACTB_uc010ksy.2_Intron|ACTB_uc011jwi.1_5'Flank	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	8					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		TGTCGACGACGAGCGCGGCGA	0.721		NaN											1	0	1.75199e-13	0.007291	1.87032e-13	20	125									
FSCN1	6624	broad.mit.edu	37	7	5633134	5633134	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:5633134G>C	uc003sou.2	+	1	681	c.567G>C	c.(565-567)CAG>CAC	p.Q189H		NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	189					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		ACAGCGTGCAGACCGCCGACC	0.741		NaN											0	0	0	0.001984	0	5	59									
C7orf28A	51622	broad.mit.edu	37	7	5949692	5949692	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:5949692G>C	uc003spf.2	+	8	815	c.725G>C	c.(724-726)AGA>ACA	p.R242T		NM_015622	NP_056437	P86791	CCZ1_HUMAN	hypothetical protein LOC51622	242						lysosomal membrane					0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0974)|OV - Ovarian serous cystadenocarcinoma(56;7.91e-15)		GATGACATGAGAATTTTATAC	0.438		NaN											0	0	0	0.010729	0	8	32									
USP42	84132	broad.mit.edu	37	7	6189333	6189333	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:6189333C>T	uc011jwo.1	+	13	1629	c.1506C>T	c.(1504-1506)GTC>GTT	p.V502V	USP42_uc010kth.1_Silent_p.V435V|USP42_uc011jwp.1_Silent_p.V502V|USP42_uc011jwq.1_Silent_p.V309V|USP42_uc011jwr.1_Silent_p.V347V	NM_032172	NP_115548	Q9H9J4	UBP42_HUMAN	ubiquitin specific peptidase 42	502					cell differentiation|protein deubiquitination|spermatogenesis|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(2)|ovary(1)|pancreas(1)|breast(1)	5		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.108)|OV - Ovarian serous cystadenocarcinoma(56;5.77e-14)		CAGCTTCTGTCCAAAACTGGT	0.453		NaN											0	0	0	0.008291	0	10	113									
ZDHHC4	55146	broad.mit.edu	37	7	6624735	6624735	+	Silent	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:6624735C>A	uc003sqi.2	+	8	943	c.585C>A	c.(583-585)CTC>CTA	p.L195L	ZDHHC4_uc003sql.2_Silent_p.L195L|ZDHHC4_uc003sqh.2_Silent_p.L195L|ZDHHC4_uc003sqj.2_Silent_p.L195L|ZDHHC4_uc003sqk.2_Silent_p.L195L|ZDHHC4_uc003sqm.2_Silent_p.L195L	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	195	DHHC-type.|Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		GGTACTTCCTCATCTACGTCT	0.527		NaN											1	0	2.44723e-14	0.004656	2.61684e-14	20	81									
ZNF12	7559	broad.mit.edu	37	7	6730899	6730899	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:6730899G>A	uc003sqt.1	-	5	2228	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	ZNF12_uc011jxa.1_Silent_p.F396F|ZNF12_uc003sqs.1_Silent_p.F520F	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	558	C2H2-type 11.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		ACATCTGAGAGAAGAATTTTC	0.413		NaN											0	0	0	0.004672	0	3	28									
ZNF12	7559	broad.mit.edu	37	7	6732258	6732258	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:6732258G>A	uc003sqt.1	-	5	869	c.315C>T	c.(313-315)TTC>TTT	p.F105F	ZNF12_uc011jxa.1_5'UTR|ZNF12_uc003sqs.1_Silent_p.F105F	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	105					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		GGGTCTCAATGAACACAGTTT	0.363		NaN											0	0	0	0.006122	0	16	125									
C7orf28B	221960	broad.mit.edu	37	7	6854450	6854450	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:6854450C>G	uc003sqx.1	-	8	758	c.725G>C	c.(724-726)AGA>ACA	p.R242T	C7orf28B_uc011jxd.1_Missense_Mutation_p.R99T	NM_198097	NP_932765	P86791	CCZ1_HUMAN	hypothetical protein LOC221960	242						lysosomal membrane					0		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)		GTATAAAATTCTCATGTCATC	0.438		NaN											0	0	0	0.002299	0	17	201									
ICA1	3382	broad.mit.edu	37	7	8198207	8198207	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:8198207G>A	uc003srm.2	-	7	722	c.655C>T	c.(655-657)CTT>TTT	p.L219F	ICA1_uc010ktr.2_Missense_Mutation_p.L219F|ICA1_uc003srl.2_Missense_Mutation_p.L207F|ICA1_uc003srn.3_Missense_Mutation_p.L145F|ICA1_uc003srp.3_Missense_Mutation_p.L218F|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Missense_Mutation_p.L219F|ICA1_uc003srr.2_Missense_Mutation_p.L218F|ICA1_uc003sro.3_Missense_Mutation_p.L219F|ICA1_uc011jxg.1_Missense_Mutation_p.L219F|ICA1_uc003srs.1_Missense_Mutation_p.L219F	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	219	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		CTCGCTCCAAGAAGATCCACT	0.373		NaN											0	0	0	0.009096	0	4	58									
IL6	3569	broad.mit.edu	37	7	22771127	22771127	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:22771127C>T	uc011jyn.1	+	6	1033	c.574C>T	c.(574-576)CAT>TAT	p.H192Y	IL6_uc003svj.3_Missense_Mutation_p.H192Y	NM_000600	NP_000591	P05231	IL6_HUMAN	interleukin 6 precursor	192					acute-phase response|cellular response to hydrogen peroxide|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|defense response to virus|endocrine pancreas development|glucagon secretion|hepatic immune response|interleukin-6-mediated signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of chemokine biosynthetic process|negative regulation of collagen biosynthetic process|negative regulation of fat cell differentiation|negative regulation of lipid storage|neuron projection development|neutrophil apoptosis|platelet activation|positive regulation of acute inflammatory response|positive regulation of anti-apoptosis|positive regulation of B cell activation|positive regulation of chemokine production|positive regulation of immunoglobulin secretion|positive regulation of interleukin-6 production|positive regulation of osteoblast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of smooth muscle cell proliferation|positive regulation of T cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of translation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of vascular endothelial growth factor production|response to glucocorticoid stimulus|response to peptidoglycan	extracellular space|interleukin-6 receptor complex	cytokine activity|growth factor activity|interleukin-6 receptor binding				0					Arsenic trioxide(DB01169)|Bicalutamide(DB01128)|Ginseng(DB01404)|Simvastatin(DB00641)	CATGACAACTCATCTCATTCT	0.512		NaN											0	0	0	0.000602	0	5	50									
TAX1BP1	8887	broad.mit.edu	37	7	27856100	27856100	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:27856100C>G	uc003szl.2	+	14	2055	c.1897C>G	c.(1897-1899)CTG>GTG	p.L633V	TAX1BP1_uc011jzo.1_Intron|TAX1BP1_uc003szk.2_Intron|TAX1BP1_uc011jzp.1_Intron	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	633					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			ACAACCAGTTCTGCAATATGG	0.363		NaN											0	0	0	0.00333	0	20	91									
TRIL	9865	broad.mit.edu	37	7	28996953	28996953	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:28996953G>A	uc003szt.2	-	3	1077	c.710C>T	c.(709-711)TCG>TTG	p.S237L	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	237	Extracellular (Potential).|LRR 8.				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						GTTGTTGGCCGAGAGGATGAG	0.677		NaN											0	0	0	0.006122	0	17	148									
NOD1	10392	broad.mit.edu	37	7	30492526	30492526	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:30492526G>A	uc003tav.2	-	6	1030	c.507C>T	c.(505-507)TTC>TTT	p.F169F	NOD1_uc010kvs.2_Silent_p.F169F	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	169					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TCTCATTGCTGAAGCCAACCA	0.587		NaN											0	0	0	0.002299	0	18	169									
BBS9	27241	broad.mit.edu	37	7	33392470	33392470	+	Splice_Site	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:33392470G>C	uc003tdn.1	+	15	2051	c.1538_splice	c.e15-1	p.D513_splice	BBS9_uc003tdo.1_Splice_Site_p.N478_splice|BBS9_uc003tdp.1_Intron|BBS9_uc003tdq.1_Intron|BBS9_uc010kwn.1_Splice_Site|BBS9_uc003tdr.1_Splice_Site_p.D37_splice|BBS9_uc003tds.1_Splice_Site|BBS9_uc011kao.1_Splice_Site_p.D391_splice	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2						fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			GTGATGGACAGATCGAAATCC	0.323		NaN							Bardet-Biedl_syndrome				0	0	0	0.001855	0	11	48									
HERPUD2	64224	broad.mit.edu	37	7	35674914	35674914	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:35674914G>C	uc003tet.2	-	6	1577	c.772C>G	c.(772-774)CAA>GAA	p.Q258E	HERPUD2_uc003tes.3_Missense_Mutation_p.Q258E	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2	258					response to unfolded protein	integral to membrane				ovary(3)	3						GCATTCATTTGAACATTCTCA	0.468		NaN											0	0	0	0.005443	0	24	170									
GCK	2645	broad.mit.edu	37	7	44193018	44193018	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:44193018C>T	uc003tkl.2	-	2	560	c.90G>A	c.(88-90)CTG>CTA	p.L30L	GCK_uc003tkj.1_Silent_p.L29L|GCK_uc003tkk.1_Silent_p.L31L	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	30					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TCACCTTCTTCAGGTCCTCCT	0.632		NaN											0	0	0	0.00361	0	54	480									
CAMK2B	816	broad.mit.edu	37	7	44259671	44259671	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:44259671G>A	uc003tkq.2	-	23	2201	c.1991C>T	c.(1990-1992)CCG>CTG	p.P664L	CAMK2B_uc003tkp.2_Missense_Mutation_p.P540L|CAMK2B_uc003tkx.2_Missense_Mutation_p.P500L|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.P516L|CAMK2B_uc003tks.2_Missense_Mutation_p.P515L|CAMK2B_uc003tku.2_Missense_Mutation_p.P501L|CAMK2B_uc003tkv.2_Missense_Mutation_p.P477L|CAMK2B_uc003tkt.2_Missense_Mutation_p.P490L|CAMK2B_uc003tkw.2_Missense_Mutation_p.P447L|CAMK2B_uc010kyc.2_Missense_Mutation_p.P540L|CAMK2B_uc003tkn.2_Missense_Mutation_p.P297L	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	664					interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						TCACTGCAGCGGGGCCACAGG	0.692		NaN											0	0	0	0.000602	0	4	19									
CAMK2B	816	broad.mit.edu	37	7	44281927	44281927	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:44281927C>T	uc003tkq.2	-	10	919	c.709G>A	c.(709-711)GAG>AAG	p.E237K	CAMK2B_uc003tkp.2_Missense_Mutation_p.E237K|CAMK2B_uc003tkx.2_Missense_Mutation_p.E237K|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.E237K|CAMK2B_uc003tks.2_Missense_Mutation_p.E237K|CAMK2B_uc003tku.2_Missense_Mutation_p.E237K|CAMK2B_uc003tkv.2_Missense_Mutation_p.E237K|CAMK2B_uc003tkt.2_Missense_Mutation_p.E237K|CAMK2B_uc003tkw.2_Missense_Mutation_p.E237K|CAMK2B_uc010kyc.2_Missense_Mutation_p.E237K	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	237	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						GTGTCCCACTCAGGGGACGGG	0.607		NaN											0	0	0	0.006122	0	16	127									
ABCA13	154664	broad.mit.edu	37	7	48311969	48311969	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:48311969C>G	uc003toq.2	+	17	2731	c.2706C>G	c.(2704-2706)CTC>CTG	p.L902L	ABCA13_uc010kyr.2_Silent_p.L405L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	902					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TAACTAGTCTCCATGAATTTG	0.393		NaN											0	0	0	0.008291	0	10	33									
ABCA13	154664	broad.mit.edu	37	7	48318381	48318381	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:48318381G>C	uc003toq.2	+	18	7615	c.7590G>C	c.(7588-7590)AAG>AAC	p.K2530N	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2530					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGCTGGTCAAGAAAGTTTCGG	0.413		NaN											0	0	0	0.00361	0	41	113									
HIP1	3092	broad.mit.edu	37	7	75172284	75172284	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:75172284C>T	uc003uds.1	-	28	2817	c.2776G>A	c.(2776-2778)GAT>AAT	p.D926N	HIP1_uc011kfz.1_Missense_Mutation_p.D752N	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	926	I/LWEQ.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						CTGTCCTTATCAGCTTTCACC	0.507		NaN	T	PDGFRB	CMML								0	0	0	0.004007	0	12	78									
HIP1	3092	broad.mit.edu	37	7	75172291	75172291	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:75172291C>T	uc003uds.1	-	28	2810	c.2769G>A	c.(2767-2769)GTG>GTA	p.V923V	HIP1_uc011kfz.1_Silent_p.V749V	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	923	Important for actin binding (By similarity).|I/LWEQ.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						TATCAGCTTTCACCTACCAGG	0.522		NaN	T	PDGFRB	CMML								0	0	0	0.00245	0	10	79									
SRCRB4D	136853	broad.mit.edu	37	7	76027118	76027118	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:76027118C>T	uc003ufb.2	-	6	933	c.585G>A	c.(583-585)GCG>GCA	p.A195A	ZP3_uc003ufc.3_Intron	NM_080744	NP_542782	Q8WTU2	SRB4D_HUMAN	scavenger receptor cysteine rich domain	195	SRCR 2.					extracellular region|membrane	scavenger receptor activity			pancreas(1)	1						GACACAGGTTCGCGCCCCCTA	0.706		NaN											0	0	0	0.000602	0	4	30									
AKAP9	10142	broad.mit.edu	37	7	91631200	91631200	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:91631200G>C	uc003ulg.2	+	8	2194	c.1969G>C	c.(1969-1971)GAT>CAT	p.D657H	AKAP9_uc003ule.2_Missense_Mutation_p.D669H|AKAP9_uc003ulf.2_Missense_Mutation_p.D657H|AKAP9_uc003uli.2_Missense_Mutation_p.D282H	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	669	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAAACTTAAAGATAATTTAGG	0.323		NaN	T	BRAF	papillary thyroid								0	0	0	0.000602	0	4	21									
AKAP9	10142	broad.mit.edu	37	7	91722446	91722446	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:91722446C>G	uc003ulg.2	+	39	9619	c.9394C>G	c.(9394-9396)CAA>GAA	p.Q3132E	AKAP9_uc003ulf.2_Missense_Mutation_p.Q3124E|AKAP9_uc003uli.2_Missense_Mutation_p.Q2755E|AKAP9_uc003ulj.2_Missense_Mutation_p.Q902E|AKAP9_uc003ull.2_Missense_Mutation_p.Q28E	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3136	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GAAGCAGTCTCAAATGCTGGA	0.378		NaN	T	BRAF	papillary thyroid								0	0	0	0.00308	0	6	36									
ANKIB1	54467	broad.mit.edu	37	7	92027928	92027928	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:92027928G>C	uc003ulw.2	+	20	3311	c.2935G>C	c.(2935-2937)GAC>CAC	p.D979H	ANKIB1_uc010lew.1_Missense_Mutation_p.D248H	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	979							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TTGGTTTCATGACATGAACCC	0.478		NaN											0	0	0	0.003954	0	20	96									
PEX1	5189	broad.mit.edu	37	7	92118624	92118624	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:92118624C>A	uc003uly.2	-	23	3846	c.3750G>T	c.(3748-3750)TGG>TGT	p.W1250C	PEX1_uc011khr.1_Missense_Mutation_p.W1042C|PEX1_uc010ley.2_Missense_Mutation_p.W1193C|PEX1_uc011khs.1_Missense_Mutation_p.W928C	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	1250					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CAAAATTCTTCCAGTCATCTT	0.378		NaN											1	0	3.59834e-05	0.001168	3.71589e-05	5	25									
PEX1	5189	broad.mit.edu	37	7	92147127	92147127	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:92147127C>T	uc003uly.2	-	5	798	c.702G>A	c.(700-702)GAG>GAA	p.E234E	PEX1_uc011khr.1_Silent_p.E26E|PEX1_uc010ley.2_Silent_p.E234E|PEX1_uc011khs.1_Intron|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	234					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CAACTGGAATCTCTGACTCGT	0.373		NaN											0	0	0	0.004672	0	3	23									
CALCR	799	broad.mit.edu	37	7	93055834	93055834	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:93055834C>T	uc003umv.1	-	15	1622	c.1361G>A	c.(1360-1362)CGC>CAC	p.R454H	CALCR_uc011kia.1_Missense_Mutation_p.R234H|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.R420H|CALCR_uc003umw.2_Missense_Mutation_p.R420H	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	436	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GTTGGAGGGGCGCCTCCCCCA	0.562		NaN											0	0	0	0.010729	0	10	79									
LMTK2	22853	broad.mit.edu	37	7	97821789	97821789	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:97821789C>T	uc003upd.1	+	11	2305	c.2012C>T	c.(2011-2013)TCC>TTC	p.S671F		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	671					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					ACTTTAAGTTCCAGTTTGGAT	0.413		NaN											0	0	0	0.007413	0	17	99									
CYP3A4	1576	broad.mit.edu	37	7	99364028	99364028	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:99364028C>T	uc003urv.1	-	9	941	c.837G>A	c.(835-837)CAG>CAA	p.Q279Q	CYP3A4_uc003urw.1_Silent_p.Q278Q|CYP3A4_uc011kiz.1_Silent_p.Q238Q|CYP3A4_uc011kja.1_Silent_p.Q230Q|CYP3A4_uc011kjb.1_Silent_p.Q129Q	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	279				Q -> HK (in Ref. 1; BAA00001/AAA35742).	alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	CTTTTGAATTCTGAGAGTCAA	0.448		NaN											0	0	0	0.001984	0	5	32									
ZSCAN21	7589	broad.mit.edu	37	7	99654714	99654714	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:99654714G>A	uc003uso.2	+	2	229	c.85G>A	c.(85-87)GAG>AAG	p.E29K	ZSCAN21_uc011kje.1_Missense_Mutation_p.E28K|ZSCAN21_uc003usn.1_Missense_Mutation_p.E28K	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	29					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			GGTAAAAGTCGAGGAGAAAGA	0.557		NaN											0	0	0	0.002299	0	22	111									
GATS	352954	broad.mit.edu	37	7	99869490	99869490	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:99869490G>C	uc003uua.3	-	1	366	c.117C>G	c.(115-117)ATC>ATG	p.I39M	GATS_uc003uty.3_RNA|GATS_uc003utz.3_RNA|GATS_uc010lgt.2_RNA|GATS_uc010lgu.2_RNA	NM_178831	NP_849153	Q8NAP1	GATS_HUMAN	GATS, stromal antigen 3 opposite strand	39											0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGGCAAGTTTGATCAGGCCCG	0.677		NaN											0	0	0	0.006122	0	15	122									
MOSPD3	64598	broad.mit.edu	37	7	100212805	100212805	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:100212805G>A	uc003uvq.2	+	6	909	c.707G>A	c.(706-708)TGA>TAA	p.*236*	MOSPD3_uc003uvr.2_Silent_p.*236*|MOSPD3_uc003uvs.2_Silent_p.*236*|MOSPD3_uc003uvt.2_Silent_p.*226*	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	236						integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTCCGGACCTGAGCTCCGTGC	0.622		NaN											0	0	0	0.012319	0	16	103									
EPHB4	2050	broad.mit.edu	37	7	100404054	100404054	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:100404054C>T	uc003uwn.1	-	14	2963	c.2472G>A	c.(2470-2472)ATG>ATA	p.M824I	EPHB4_uc003uwm.1_Missense_Mutation_p.M731I|EPHB4_uc010lhj.1_Missense_Mutation_p.M824I	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	824	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					CCTGATTGCTCATGTCCCAGT	0.547		NaN											0	0	0	0.012319	0	18	78									
PSMC2	5701	broad.mit.edu	37	7	103008184	103008184	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:103008184C>T	uc003vbs.2	+	11	1142	c.1072C>T	c.(1072-1074)CAC>TAC	p.H358Y	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|PSMC2_uc011klo.1_Missense_Mutation_p.H221Y	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	358					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						ATTTAAGATTCACGCTCGTTC	0.338		NaN											0	0	0	0.001855	0	13	48									
LAMB1	3912	broad.mit.edu	37	7	107599732	107599732	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:107599732C>T	uc003vew.2	-	20	2987	c.2652G>A	c.(2650-2652)TTG>TTA	p.L884L	LAMB1_uc003vev.2_Silent_p.L908L	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	884	Laminin EGF-like 8.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTGGCAGTTCAAGCACTCCC	0.542		NaN											0	0	0	0.013114	0	35	238									
DOCK4	9732	broad.mit.edu	37	7	111509670	111509670	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:111509670G>A	uc003vfx.2	-	21	2338	c.2069C>T	c.(2068-2070)ACA>ATA	p.T690I	DOCK4_uc003vfw.2_Missense_Mutation_p.T131I|DOCK4_uc003vfy.2_Missense_Mutation_p.T690I|DOCK4_uc003vga.1_Missense_Mutation_p.T295I	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	690					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				CTCTGCTTCTGTGATCCGGTC	0.423		NaN											0	0	0	0.00499	0	12	47									
PTPRZ1	5803	broad.mit.edu	37	7	121652246	121652246	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:121652246G>A	uc003vjy.2	+	12	3541	c.3146G>A	c.(3145-3147)GGA>GAA	p.G1049E	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1049	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ATAATATATGGAAATGAGACT	0.333		NaN											0	0	0	0.000602	0	4	20									
TAS2R16	50833	broad.mit.edu	37	7	122635052	122635052	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:122635052C>T	uc003vkl.1	-	1	703	c.637G>A	c.(637-639)GGT>AGT	p.G213S		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	213	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						TTGCAGTGACCAGTGCTATGA	0.463		NaN											0	0	0	0.006214	0	7	44									
FLNC	2318	broad.mit.edu	37	7	128490515	128490515	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:128490515G>A	uc003vnz.3	+	32	5585	c.5376G>A	c.(5374-5376)GCG>GCA	p.A1792A	FLNC_uc003voa.3_Silent_p.A1759A	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1792	Filamin 16.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCCCCTTCGCGGTGCAGAAAG	0.527		NaN											0	0	0	0.010818	0	27	142									
CPA2	1358	broad.mit.edu	37	7	129912983	129912983	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:129912983C>T	uc003vpq.2	+	5	471	c.452C>T	c.(451-453)TCT>TTT	p.S151F	CPA2_uc011kpc.1_Missense_Mutation_p.S151F	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	151					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					AATATTGGCTCTTCTTTTGAG	0.473		NaN											0	0	0	0.004482	0	7	53									
OR2F2	135948	broad.mit.edu	37	7	143632802	143632802	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:143632802G>A	uc011ktv.1	+	1	477	c.477G>A	c.(475-477)CAG>CAA	p.Q159Q		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					CTCTTGTGCAGACTGCTATCA	0.527		NaN											0	0	0	0.00499	0	14	93									
GIMAP6	474344	broad.mit.edu	37	7	150327201	150327201	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:150327201G>C	uc003whn.2	-	2	454	c.30C>G	c.(28-30)CCC>CCG	p.P10P	GIMAP6_uc003whm.2_Missense_Mutation_p.P5R	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	10							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GATTCTCCTGGGGAATTTGTT	0.423		NaN											0	0	0	0.012319	0	20	136									
GIMAP5	55340	broad.mit.edu	37	7	150439547	150439547	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr7:150439547C>G	uc003whr.1	+	3	672	c.320C>G	c.(319-321)TCT>TGT	p.S107C	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	107	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TACCTGCTCTCTGCCCCGGGG	0.582		NaN											0	0	0	0.00499	0	12	117									
RP1L1	94137	broad.mit.edu	37	8	10468839	10468839	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:10468839G>A	uc003wtc.2	-	4	2998	c.2769C>T	c.(2767-2769)TCC>TCT	p.S923S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	923					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCTTCTCCTCGGACAGCCCCC	0.697		NaN											0	0	0	0.00308	0	7	44									
XPO7	23039	broad.mit.edu	37	8	21848409	21848409	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:21848409C>T	uc003xaa.3	+	18	2122	c.2020C>T	c.(2020-2022)CGT>TGT	p.R674C	XPO7_uc010lti.2_Missense_Mutation_p.R683C|XPO7_uc010ltk.2_Missense_Mutation_p.R675C	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	674					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		AGCACTTGGGCGTCTCCTCAT	0.418		NaN											0	0	0	0.008361	0	23	173									
FAM160B2	64760	broad.mit.edu	37	8	21958231	21958231	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:21958231G>A	uc011kyx.1	+	11	1519	c.1468G>A	c.(1468-1470)GAG>AAG	p.E490K	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	490											0						ACCAGAGCCTGAGAGCTATGA	0.617		NaN											0	0	0	0.003271	0	29	176									
PRKDC	5591	broad.mit.edu	37	8	48690357	48690357	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:48690357C>T	uc003xqi.2	-	85	11989	c.11932G>A	c.(11932-11934)GGC>AGC	p.G3978S	PRKDC_uc003xqj.2_Missense_Mutation_p.G3947S|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3978	PI3K/PI4K.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TACATAAGGCCCGTTTCTTTC	0.498		NaN						NHEJ					0	0	0	0.001855	0	13	102									
PRKDC	5591	broad.mit.edu	37	8	48772207	48772207	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:48772207C>T	uc003xqi.2	-	47	6229	c.6172G>A	c.(6172-6174)GAC>AAC	p.D2058N	PRKDC_uc003xqj.2_Missense_Mutation_p.D2058N|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2058					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GGTCTAGGGTCTTGGGAGCTG	0.443		NaN						NHEJ					0	0	0	0.012213	0	23	173									
LYN	4067	broad.mit.edu	37	8	56922538	56922538	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:56922538G>C	uc003xsk.3	+	13	1690	c.1408G>C	c.(1408-1410)GAT>CAT	p.D470H	LYN_uc003xsl.3_Missense_Mutation_p.D449H	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	470	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			GAACTGCCCAGATGAGCTCTA	0.483		NaN											0	0	0	0.008291	0	10	73									
ASPH	444	broad.mit.edu	37	8	62438579	62438579	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:62438579C>T	uc003xuj.2	-	22	2126	c.1857G>A	c.(1855-1857)CTG>CTA	p.L619L	ASPH_uc011leg.1_Silent_p.L590L	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	619	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	CTTTTTCCCTCAGGTTTTCAT	0.493		NaN											0	0	0	0.004482	0	7	55									
VCPIP1	80124	broad.mit.edu	37	8	67547599	67547599	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:67547599C>T	uc003xwn.2	-	3	3065	c.2806G>A	c.(2806-2808)GAT>AAT	p.D936N		NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	936					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TGCTTGCCATCAGCCATACCT	0.323		NaN											0	0	0	0.006214	0	6	36									
SULF1	23213	broad.mit.edu	37	8	70515500	70515500	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:70515500G>A	uc010lza.1	+	11	1852	c.1135G>A	c.(1135-1137)GAT>AAT	p.D379N	SULF1_uc003xyd.2_Missense_Mutation_p.D379N|SULF1_uc003xye.2_Missense_Mutation_p.D379N|SULF1_uc003xyf.2_Missense_Mutation_p.D379N|SULF1_uc003xyg.2_Missense_Mutation_p.D379N|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	379					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CACACCTCCTGATGTGGACGG	0.542		NaN											0	0	0	0.007291	0	29	110									
SLCO5A1	81796	broad.mit.edu	37	8	70585257	70585257	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:70585257G>A	uc003xyl.2	-	10	3101	c.2394C>T	c.(2392-2394)TTC>TTT	p.F798F	SLCO5A1_uc010lzb.2_Silent_p.F743F|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	798	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CCTGGGTGCTGAAAGCTGGGC	0.577		NaN											0	0	0	0.001368	0	11	135									
C8orf84	157869	broad.mit.edu	37	8	73979650	73979650	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:73979650G>C	uc003xzf.2	-	5	926	c.721C>G	c.(721-723)CAA>GAA	p.Q241E		NM_153225	NP_694957	Q8IVN8	RPESP_HUMAN	RPE-spondin precursor	241					immune response	extracellular region	polysaccharide binding|scavenger receptor activity				0						CAAGTTCCTTGACACCGAGGA	0.373		NaN											0	0	0	0.004482	0	6	80									
JPH1	56704	broad.mit.edu	37	8	75227753	75227753	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:75227753G>C	uc003yae.2	-	2	522	c.482C>G	c.(481-483)ACC>AGC	p.T161S	JPH1_uc003yaf.2_Missense_Mutation_p.T161S|JPH1_uc003yag.1_Missense_Mutation_p.T25S	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	161	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			GGCCAGCGAGGTACGCAGCGG	0.731		NaN											0	0	0	0.00308	0	5	48									
E2F5	1875	broad.mit.edu	37	8	86121423	86121423	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:86121423C>T	uc003ycz.3	+	6	699	c.662C>T	c.(661-663)TCA>TTA	p.S221L	E2F5_uc003yda.3_Missense_Mutation_p.S221L|E2F5_uc010mab.2_Missense_Mutation_p.S60L|E2F5_uc003ydb.3_Missense_Mutation_p.S40L	NM_001951	NP_001942	Q15329	E2F5_HUMAN	E2F transcription factor 5 isoform 1	221					G1 phase of mitotic cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1						AAGAGTCATTCAGGACCTATC	0.393		NaN											0	0	0	0.001984	0	5	38									
DECR1	1666	broad.mit.edu	37	8	91029411	91029411	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:91029411C>G	uc003yek.1	+	2	270	c.129C>G	c.(127-129)TTC>TTG	p.F43L	DECR1_uc011lgc.1_Missense_Mutation_p.F34L|DECR1_uc011lgd.1_Intron	NM_001359	NP_001350	Q16698	DECR_HUMAN	2,4-dienoyl CoA reductase 1 precursor	43					fatty acid beta-oxidation|protein homotetramerization	mitochondrial matrix|nucleus|plasma membrane	2,4-dienoyl-CoA reductase (NADPH) activity|NADPH binding|oxidoreductase activity, acting on NADH or NADPH				0			BRCA - Breast invasive adenocarcinoma(11;0.00953)			AATCTAAATTCTTTTCACCTC	0.333		NaN											0	0	0	0.001168	0	6	32									
TMEM67	91147	broad.mit.edu	37	8	94767349	94767349	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:94767349G>C	uc011lgk.1	+	1	278	c.207G>C	c.(205-207)CAG>CAC	p.Q69H	TMEM67_uc010mau.2_Missense_Mutation_p.Q69H|TMEM67_uc010mav.2_Missense_Mutation_p.Q69H|TMEM67_uc010mat.1_5'UTR|TMEM67_uc010maw.2_Missense_Mutation_p.Q69H|TMEM67_uc003yga.3_5'UTR	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	69					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			GAGCTAACCAGAGGCAAGATG	0.527		NaN											0	0	0	0.003954	0	19	196									
INTS8	55656	broad.mit.edu	37	8	95892357	95892357	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:95892357C>T	uc003yhb.2	+	27	3009	c.2883C>T	c.(2881-2883)ATC>ATT	p.I961I	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Silent_p.I771I	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	961					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TCAAAGCCATCGGCCAGACAG	0.388		NaN											0	0	0	0.00308	0	5	76									
TSPYL5	85453	broad.mit.edu	37	8	98288992	98288992	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:98288992C>T	uc003yhy.2	-	1	1185	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	361					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					TTGTCAGACTCAATGGAGCTG	0.478		NaN											0	0	0	0.010504	0	19	153									
POP1	10940	broad.mit.edu	37	8	99135698	99135698	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:99135698C>G	uc003yij.3	+	2	233	c.133C>G	c.(133-135)CAA>GAA	p.Q45E	POP1_uc011lgv.1_Missense_Mutation_p.Q45E|POP1_uc003yik.2_Missense_Mutation_p.Q45E	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	45					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TTTCCAAGCTCAAAAACAAGG	0.274		NaN											0	0	0	0.000602	0	4	22									
POP1	10940	broad.mit.edu	37	8	99170408	99170408	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:99170408C>T	uc003yij.3	+	16	3084	c.2984C>T	c.(2983-2985)TCC>TTC	p.S995F	POP1_uc011lgv.1_Missense_Mutation_p.S995F|POP1_uc003yik.2_Missense_Mutation_p.S995F	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	995					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GATATGCTGTCCAGCCAGCCT	0.547		NaN											0	0	0	0.007413	0	20	167									
KCNS2	3788	broad.mit.edu	37	8	99440621	99440621	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:99440621G>C	uc003yin.2	+	2	764	c.414G>C	c.(412-414)CAG>CAC	p.Q138H		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	138	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			GGGACGAGCAGAGTGACCAGG	0.577		NaN											0	0	0	0.001984	0	5	57									
RGS22	26166	broad.mit.edu	37	8	101014551	101014551	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:101014551C>G	uc003yjb.1	-	18	2864	c.2669G>C	c.(2668-2670)AGA>ACA	p.R890T	RGS22_uc003yja.1_Missense_Mutation_p.R709T|RGS22_uc003yjc.1_Missense_Mutation_p.R878T|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	890	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GTAAGTTATTCTCCGGAACTG	0.323		NaN											0	0	0	0.00308	0	6	29									
PKHD1L1	93035	broad.mit.edu	37	8	110510690	110510690	+	Splice_Site	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:110510690G>C	uc003yne.2	+	66	10704	c.10600_splice	c.e66-1	p.S3534_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTCCAAACAGAGCTCATTAA	0.289		NaN								HNSCC(38;0.096)			0	0	0	0.008291	0	11	39									
COL14A1	7373	broad.mit.edu	37	8	121383405	121383405	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:121383405C>T	uc003yox.2	+	48	5591	c.5326C>T	c.(5326-5328)CAG>TAG	p.Q1776*		NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1776	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCATCCAGATCAGCCAGAGTT	0.522		NaN											0	0	0	0.004656	0	18	199									
MTBP	27085	broad.mit.edu	37	8	121514760	121514760	+	Silent	SNP	A	A	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:121514760A>G	uc003ypc.1	+	15	1683	c.1638A>G	c.(1636-1638)TCA>TCG	p.S546S		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	546	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			CTAATTCCTCAAGTCTAATGG	0.299		NaN											0	0	0	0.004672	0	3	14									
RNF139	11236	broad.mit.edu	37	8	125487428	125487428	+	Silent	SNP	C	C	G	rs147204700		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:125487428C>G	uc003yrc.2	+	1	421	c.78C>G	c.(76-78)CTC>CTG	p.L26L	uc003yrb.2_5'Flank	NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	26					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			AAGTGGCGCTCCGGGTGCCCT	0.662		NaN							Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				0	0	0	0.00245	0	12	102									
RNF139	11236	broad.mit.edu	37	8	125487452	125487452	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:125487452C>G	uc003yrc.2	+	1	445	c.102C>G	c.(100-102)ATC>ATG	p.I34M	uc003yrb.2_5'Flank	NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	34					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			TTTACATCATCGACGCCATCT	0.637		NaN							Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				0	0	0	0.004656	0	20	169									
RNF139	11236	broad.mit.edu	37	8	125487527	125487527	+	Silent	SNP	C	C	G	rs142523795		TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:125487527C>G	uc003yrc.2	+	1	520	c.177C>G	c.(175-177)CTC>CTG	p.L59L	uc003yrb.2_5'Flank	NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	59	Helical; (Potential).				negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			TCCTCCGGCTCTTTGGTAAGG	0.627		NaN							Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				0	0	0	0.010504	0	16	167									
EFR3A	23167	broad.mit.edu	37	8	132982779	132982779	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:132982779G>C	uc003yte.2	+	10	1249	c.1048G>C	c.(1048-1050)GAA>CAA	p.E350Q		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	350						plasma membrane	binding	p.S348fs*15(1)		ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TCTCAGCGTTGAATTCGAAGC	0.393		NaN											0	0	0	0.004672	0	3	30									
PHF20L1	51105	broad.mit.edu	37	8	133848934	133848934	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:133848934G>C	uc003ytt.2	+	16	2384	c.2059G>C	c.(2059-2061)GAG>CAG	p.E687Q	PHF20L1_uc011lja.1_Missense_Mutation_p.E661Q	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	687	PHD-type.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			ATGTATTTGTGAGATGGATGA	0.408		NaN											0	0	0	0.004482	0	6	54									
WISP1	8840	broad.mit.edu	37	8	134225348	134225348	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:134225348G>A	uc003yub.2	+	2	387	c.311G>A	c.(310-312)AGC>AAC	p.S104N	WISP1_uc003yuc.2_Missense_Mutation_p.S104N|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Missense_Mutation_p.S104N|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_RNA	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	104	IGFBP N-terminal.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			TGTGACTACAGCGGGGACCGC	0.612		NaN											0	0	0	0.00361	0	32	252									
PTK2	5747	broad.mit.edu	37	8	141810664	141810664	+	Silent	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:141810664C>A	uc003yvu.2	-	12	1217	c.987G>T	c.(985-987)GTG>GTT	p.V329V	PTK2_uc011ljq.1_5'UTR|PTK2_uc003yvp.2_5'UTR|PTK2_uc003yvq.2_5'UTR|PTK2_uc003yvr.2_Silent_p.V228V|PTK2_uc003yvs.2_Silent_p.V329V|PTK2_uc003yvt.2_Silent_p.V351V|PTK2_uc003yvv.2_Silent_p.V216V|PTK2_uc011ljr.1_Silent_p.V329V	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	329	FERM.				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			ATGGTGCCGTCACTGTCAGAG	0.468		NaN											1	0	3.59834e-05	0.001168	3.71589e-05	6	66									
EEF1D	1936	broad.mit.edu	37	8	144668986	144668986	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:144668986C>T	uc011lki.1	-	2	299	c.30G>A	c.(28-30)AAG>AAA	p.K10K	EEF1D_uc003yyp.1_Silent_p.K376K|EEF1D_uc003yyq.1_Silent_p.K426K|EEF1D_uc011lkj.1_Silent_p.K375K|EEF1D_uc003yyr.2_Silent_p.K376K|EEF1D_uc003yyt.2_Silent_p.K376K|EEF1D_uc011lkk.1_Silent_p.K10K|EEF1D_uc003yys.2_Silent_p.K10K|EEF1D_uc003yyv.2_Silent_p.K10K|EEF1D_uc003yyu.2_Silent_p.K10K|EEF1D_uc011lkl.1_Silent_p.K10K	NM_001130057	NP_001123529	P29692	EF1D_HUMAN	eukaryotic translation elongation factor 1 delta	10					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|signal transducer activity|translation elongation factor activity			ovary(1)|kidney(1)|skin(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			CGAACCAGATCTTCTCATGTG	0.547		NaN											0	0	0	0.00499	0	13	251									
ZNF623	9831	broad.mit.edu	37	8	144733392	144733392	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:144733392G>C	uc003yzd.2	+	1	1439	c.1350G>C	c.(1348-1350)CAG>CAC	p.Q450H	ZNF623_uc011lkp.1_Missense_Mutation_p.Q410H|ZNF623_uc003yzc.2_Missense_Mutation_p.Q410H	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	450	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			TTCTGCACCAGATTATTCACA	0.463		NaN											0	0	0	0.00499	0	13	96									
EPPK1	83481	broad.mit.edu	37	8	144947098	144947098	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:144947098C>T	uc003zaa.1	-	1	337	c.324G>A	c.(322-324)CTG>CTA	p.L108L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	108	Plectin 2.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTTCTCCTTCAGCTCCAGCC	0.677		NaN											0	0	0	0.001168	0	5	78									
PLEC	5339	broad.mit.edu	37	8	144995185	144995185	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:144995185G>T	uc003zaf.1	-	32	9385	c.9215C>A	c.(9214-9216)GCA>GAA	p.A3072E	PLEC_uc003zab.1_Missense_Mutation_p.A2935E|PLEC_uc003zac.1_Missense_Mutation_p.A2939E|PLEC_uc003zad.2_Missense_Mutation_p.A2935E|PLEC_uc003zae.1_Missense_Mutation_p.A2903E|PLEC_uc003zag.1_Missense_Mutation_p.A2913E|PLEC_uc003zah.2_Missense_Mutation_p.A2921E|PLEC_uc003zaj.2_Missense_Mutation_p.A2962E	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3072	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCGCTGCTCTGCCGTGAAGTA	0.597		NaN											1	0	3.76054e-38	0.00361	4.07156e-38	64	160									
PLEC	5339	broad.mit.edu	37	8	144998327	144998327	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:144998327C>T	uc003zaf.1	-	31	6351	c.6181G>A	c.(6181-6183)GAG>AAG	p.E2061K	PLEC_uc003zab.1_Missense_Mutation_p.E1924K|PLEC_uc003zac.1_Missense_Mutation_p.E1928K|PLEC_uc003zad.2_Missense_Mutation_p.E1924K|PLEC_uc003zae.1_Missense_Mutation_p.E1892K|PLEC_uc003zag.1_Missense_Mutation_p.E1902K|PLEC_uc003zah.2_Missense_Mutation_p.E1910K|PLEC_uc003zaj.2_Missense_Mutation_p.E1951K	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2061	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						ATCTCCTCCTCCACCTGCCGC	0.697		NaN											0	0	0	0.006214	0	8	78									
PLEC	5339	broad.mit.edu	37	8	145007044	145007044	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:145007044C>G	uc003zaf.1	-	14	2235	c.2065G>C	c.(2065-2067)GAG>CAG	p.E689Q	PLEC_uc003zab.1_Missense_Mutation_p.E552Q|PLEC_uc003zac.1_Missense_Mutation_p.E556Q|PLEC_uc003zad.2_Missense_Mutation_p.E552Q|PLEC_uc003zae.1_Missense_Mutation_p.E520Q|PLEC_uc003zag.1_Missense_Mutation_p.E530Q|PLEC_uc003zah.2_Missense_Mutation_p.E538Q|PLEC_uc003zaj.2_Missense_Mutation_p.E579Q	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	689	Spectrin 1.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGCTGCGCCTCCACGCTGGGC	0.677		NaN											0	0	0	0.001984	0	5	77									
PLEC	5339	broad.mit.edu	37	8	145007080	145007080	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:145007080C>T	uc003zaf.1	-	14	2199	c.2029G>A	c.(2029-2031)GAT>AAT	p.D677N	PLEC_uc003zab.1_Missense_Mutation_p.D540N|PLEC_uc003zac.1_Missense_Mutation_p.D544N|PLEC_uc003zad.2_Missense_Mutation_p.D540N|PLEC_uc003zae.1_Missense_Mutation_p.D508N|PLEC_uc003zag.1_Missense_Mutation_p.D518N|PLEC_uc003zah.2_Missense_Mutation_p.D526N|PLEC_uc003zaj.2_Missense_Mutation_p.D567N	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	677	Spectrin 1.|Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TCAGCGCCATCCACACGGTGC	0.662		NaN											0	0	0	0.006214	0	6	81									
PARP10	84875	broad.mit.edu	37	8	145057596	145057596	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:145057596C>T	uc003zal.3	-	8	2269	c.2161G>A	c.(2161-2163)GAG>AAG	p.E721K	PARP10_uc003zak.3_Missense_Mutation_p.E418K|PARP10_uc011lku.1_Missense_Mutation_p.E733K|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.E712K	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	721	Myc binding.					Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGGTCCAGCTCCTCCACATCC	0.692		NaN											0	0	0	0.008291	0	6	38									
GRINA	2907	broad.mit.edu	37	8	145065951	145065951	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:145065951C>G	uc003zan.1	+	3	637	c.471C>G	c.(469-471)ATC>ATG	p.I157M	GRINA_uc003zao.1_Missense_Mutation_p.I157M|GRINA_uc003zap.1_Missense_Mutation_p.I157M	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	157						integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACAAGAGCATCCGACAGGCCT	0.612		NaN											0	0	0	0.008871	0	15	138									
SPATC1	375686	broad.mit.edu	37	8	145095934	145095934	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr8:145095934C>T	uc011lkw.1	+	3	1334	c.1232C>T	c.(1231-1233)TCG>TTG	p.S411L	SPATC1_uc011lkx.1_Missense_Mutation_p.S411L	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	411										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACAGAACCGTCGACGAAGAGC	0.632		NaN											0	0	0	0.010504	0	21	164									
VLDLR	7436	broad.mit.edu	37	9	2652822	2652822	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:2652822G>A	uc003zhk.1	+	18	2856	c.2459G>A	c.(2458-2460)CGG>CAG	p.R820Q	VLDLR_uc003zhl.1_Missense_Mutation_p.R792Q|VLDLR_uc003zhm.1_RNA|VLDLR_uc003zhn.1_Missense_Mutation_p.R751Q	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	820	Cytoplasmic (Potential).				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		TTGATGTGGCGGAATTGGCAA	0.423		NaN											0	0	0	0.001855	0	10	80									
NFIB	4781	broad.mit.edu	37	9	14313493	14313493	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:14313493G>A	uc003zle.2	-	1	453	c.18C>T	c.(16-18)ATC>ATT	p.I6I	NFIB_uc003zlf.2_Silent_p.I6I|NFIB_uc011lmo.1_Silent_p.I6I	NM_005596	NP_005587	O00712	NFIB_HUMAN	nuclear factor I/B	6	CTF/NF-I.				anterior commissure morphogenesis|chondrocyte differentiation|Clara cell differentiation|commissural neuron axon guidance|DNA replication|glial cell differentiation|lung ciliated cell differentiation|negative regulation of DNA binding|negative regulation of epithelial cell proliferation involved in lung morphogenesis|negative regulation of mesenchymal cell proliferation involved in lung development|positive regulation of transcription from RNA polymerase II promoter|principal sensory nucleus of trigeminal nerve development|Type I pneumocyte differentiation|Type II pneumocyte differentiation	cerebellar mossy fiber|nucleolus|nucleus	RNA polymerase II transcription corepressor activity|sequence-specific DNA binding RNA polymerase II transcription factor activity				0				GBM - Glioblastoma multiforme(50;4.4e-08)|LUAD - Lung adenocarcinoma(58;0.119)|Lung(218;0.164)		GAGTGAGACAGATGGGAGAAT	0.443		NaN	T	MYB|HGMA2	adenoid cystic carcinoma|lipoma								0	0	0	0.00499	0	12	120									
NFIB	4781	broad.mit.edu	37	9	14313500	14313500	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:14313500G>A	uc003zle.2	-	1	446	c.11C>T	c.(10-12)TCT>TTT	p.S4F	NFIB_uc003zlf.2_Missense_Mutation_p.S4F|NFIB_uc011lmo.1_Missense_Mutation_p.S4F	NM_005596	NP_005587	O00712	NFIB_HUMAN	nuclear factor I/B	4	CTF/NF-I.				anterior commissure morphogenesis|chondrocyte differentiation|Clara cell differentiation|commissural neuron axon guidance|DNA replication|glial cell differentiation|lung ciliated cell differentiation|negative regulation of DNA binding|negative regulation of epithelial cell proliferation involved in lung morphogenesis|negative regulation of mesenchymal cell proliferation involved in lung development|positive regulation of transcription from RNA polymerase II promoter|principal sensory nucleus of trigeminal nerve development|Type I pneumocyte differentiation|Type II pneumocyte differentiation	cerebellar mossy fiber|nucleolus|nucleus	RNA polymerase II transcription corepressor activity|sequence-specific DNA binding RNA polymerase II transcription factor activity				0				GBM - Glioblastoma multiforme(50;4.4e-08)|LUAD - Lung adenocarcinoma(58;0.119)|Lung(218;0.164)		ACAGATGGGAGAATACATCAT	0.448		NaN	T	MYB|HGMA2	adenoid cystic carcinoma|lipoma								0	0	0	0.004007	0	11	113									
CNTLN	54875	broad.mit.edu	37	9	17484452	17484452	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:17484452G>A	uc003zmz.2	+	24	4038	c.4012G>A	c.(4012-4014)GAA>AAA	p.E1338K	CNTLN_uc003zmy.2_Missense_Mutation_p.E1339K|CNTLN_uc010mio.2_Missense_Mutation_p.E1018K	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1339						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		AGATTTAGAGGAAATATTAGA	0.323		NaN											0	0	0	0.001168	0	5	34									
IFNA4	3441	broad.mit.edu	37	9	21187338	21187338	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:21187338C>G	uc003zon.2	-	1	261	c.193G>C	c.(193-195)GAG>CAG	p.E65Q		NM_021068	NP_066546	P05014	IFNA4_HUMAN	interferon, alpha 4 precursor	65					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;2.69e-202)|Lung(24;2.26e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CCATCAAACTCCTCCTCGGGG	0.512		NaN											0	0	0	0.00308	0	8	100									
KLHL9	55958	broad.mit.edu	37	9	21334174	21334174	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:21334174G>A	uc003zoy.2	-	1	1256	c.685C>T	c.(685-687)CGG>TGG	p.R229W	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	229	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		TAATCCATCCGAGGGTCTTCC	0.428		NaN											0	0	0	0.00245	0	14	78									
TOPORS	10210	broad.mit.edu	37	9	32541498	32541498	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:32541498C>T	uc003zrb.2	-	3	3192	c.3025G>A	c.(3025-3027)GAG>AAG	p.E1009K	TOPORS_uc003zrc.2_Missense_Mutation_p.E942K	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	1009					DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		GGCTGGTTCTCCAAATCAGAA	0.428		NaN											0	0	0	0.001168	0	6	100									
UBAP2	55833	broad.mit.edu	37	9	33948389	33948389	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:33948389G>T	uc003ztq.1	-	13	1366	c.1253C>A	c.(1252-1254)TCA>TAA	p.S418*	UBAP2_uc011loc.1_Nonsense_Mutation_p.S327*|UBAP2_uc011lod.1_Nonsense_Mutation_p.S151*|UBAP2_uc011loe.1_Nonsense_Mutation_p.S173*|UBAP2_uc011lof.1_Nonsense_Mutation_p.S343*|UBAP2_uc011log.1_Nonsense_Mutation_p.S364*|UBAP2_uc003ztr.2_Nonsense_Mutation_p.S290*|UBAP2_uc003zts.2_Nonsense_Mutation_p.S51*	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	418										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		ACTGAGGACTGAGGACTGGGA	0.483		NaN											1	0	4.68919e-08	0.008291	4.93278e-08	9	139									
KIF24	347240	broad.mit.edu	37	9	34257247	34257247	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:34257247C>T	uc003zua.3	-	11	2478	c.2358G>A	c.(2356-2358)CTG>CTA	p.L786L	KIF24_uc010mkb.2_Intron	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	786					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			AAGACCTTTTCAGTGGTTGGT	0.517		NaN											0	0	0	0.008291	0	9	80									
FANCG	2189	broad.mit.edu	37	9	35076535	35076535	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:35076535C>G	uc003zwb.1	-	8	1462	c.970G>C	c.(970-972)GAG>CAG	p.E324Q	FANCG_uc003zwa.1_Missense_Mutation_p.E66Q|FANCG_uc010mkj.1_Missense_Mutation_p.E66Q|FANCG_uc011lot.1_Missense_Mutation_p.E324Q	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	324					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AATTCTACCTCAATGAGAAAC	0.463		NaN	Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				0	0	0	0.001368	0	10	70									
FANCG	2189	broad.mit.edu	37	9	35077090	35077090	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:35077090C>G	uc003zwb.1	-	6	1147	c.655G>C	c.(655-657)GAG>CAG	p.E219Q	FANCG_uc003zwa.1_5'UTR|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Missense_Mutation_p.E219Q	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	219					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GTGATCAGCTCCTGGAGACCT	0.567		NaN	Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				0	0	0	0.006122	0	15	67									
UNC13B	10497	broad.mit.edu	37	9	35310490	35310490	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:35310490C>T	uc003zwq.2	+	9	1080	c.788C>T	c.(787-789)TCC>TTC	p.S263F	UNC13B_uc010mkl.1_Missense_Mutation_p.S263F|UNC13B_uc003zwr.2_Missense_Mutation_p.S263F	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	263					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			AGGTATGGCTCCTCCTGTAAT	0.468		NaN											0	0	0	0.004007	0	14	107									
FRMPD1	22844	broad.mit.edu	37	9	37744481	37744481	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:37744481G>A	uc004aag.1	+	16	2496	c.2452G>A	c.(2452-2454)GAT>AAT	p.D818N	FRMPD1_uc004aah.1_Missense_Mutation_p.D818N	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	818						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TTGTGGGCCAGATGGAAGACA	0.547		NaN											0	0	0	0.010729	0	12	124									
PGM5	5239	broad.mit.edu	37	9	71080072	71080072	+	Missense_Mutation	SNP	T	T	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:71080072T>A	uc004agr.2	+	7	1336	c.1107T>A	c.(1105-1107)AAT>AAA	p.N369K		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	369					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						TCTTCTCAAATCTGATGGACT	0.453		NaN											0	0	0	0.008291	0	9	73									
SMC5	23137	broad.mit.edu	37	9	72930435	72930435	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:72930435C>G	uc004ahr.2	+	13	1864	c.1747C>G	c.(1747-1749)CAG>GAG	p.Q583E		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	583	Flexible hinge.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						CCTTTGCTGTCAGTATCATAT	0.343		NaN											0	0	0	0.000602	0	4	27									
PRUNE2	158471	broad.mit.edu	37	9	79322056	79322056	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:79322056C>T	uc010mpk.2	-	8	5258	c.5134G>A	c.(5134-5136)GAT>AAT	p.D1712N		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1712					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTGGATTCATCCTCAGCAACG	0.443		NaN											0	0	0	0.001984	0	5	39									
ZNF462	58499	broad.mit.edu	37	9	109694815	109694815	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:109694815C>G	uc004bcz.2	+	5	6390	c.6101C>G	c.(6100-6102)TCT>TGT	p.S2034C	ZNF462_uc010mto.2_Missense_Mutation_p.S1943C|ZNF462_uc004bda.2_Missense_Mutation_p.S1942C|ZNF462_uc011lvz.1_5'Flank	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	2034	C2H2-type 19.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						TCGTTTGTTTCTGCTTTCAGG	0.517		NaN											0	0	0	0.001855	0	10	98									
CTNNAL1	8727	broad.mit.edu	37	9	111755015	111755015	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:111755015G>C	uc004bdo.1	-	3	458	c.416C>G	c.(415-417)ACA>AGA	p.T139R	CTNNAL1_uc010mtt.1_Missense_Mutation_p.T139R|CTNNAL1_uc004bdp.1_Missense_Mutation_p.T139R	NM_003798	NP_003789	Q9UBT7	CTNL1_HUMAN	catenin, alpha-like 1	139					cell adhesion|Rho protein signal transduction	actin cytoskeleton|cytosol|plasma membrane	cadherin binding|structural molecule activity			ovary(1)	1				STAD - Stomach adenocarcinoma(157;0.0768)		TATCACTCCTGTTTTGTCTGT	0.378		NaN											0	0	0	0.009096	0	3	27									
C9orf84	158401	broad.mit.edu	37	9	114454446	114454446	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:114454446G>C	uc004bfr.2	-	25	3754	c.3619C>G	c.(3619-3621)CTA>GTA	p.L1207V	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Missense_Mutation_p.L1168V|C9orf84_uc010mug.2_Missense_Mutation_p.L1118V	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1207										ovary(2)	2						ATATTAATTAGAAAAGGAGTA	0.373		NaN											0	0	0	0.001168	0	6	28									
NDUFA8	4702	broad.mit.edu	37	9	124906608	124906608	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:124906608G>C	uc004blv.2	-	4	573	c.431C>G	c.(430-432)TCA>TGA	p.S144*		NM_014222	NP_055037	P51970	NDUA8_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	144					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			breast(1)	1					NADH(DB00157)	TCTTGGTCTTGAGTGATAGGG	0.517		NaN											0	0	0	0.004482	0	6	84									
RC3H2	54542	broad.mit.edu	37	9	125621301	125621301	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:125621301C>A	uc010mwc.1	-	12	2171	c.1930G>T	c.(1930-1932)GAG>TAG	p.E644*	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Nonsense_Mutation_p.E644*|RC3H2_uc004bne.3_Nonsense_Mutation_p.E644*	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	644	Pro-rich.					cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						AGGGAGGACTCTGGAACGTTA	0.507		NaN											1	0	3.27435e-08	0.00245	3.44725e-08	15	62									
RC3H2	54542	broad.mit.edu	37	9	125642878	125642878	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:125642878C>G	uc010mwc.1	-	6	1196	c.955G>C	c.(955-957)GAT>CAT	p.D319H	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.D319H|RC3H2_uc004bne.3_Missense_Mutation_p.D319H|RC3H2_uc011lzf.1_Missense_Mutation_p.D56H|RC3H2_uc011lzg.1_Missense_Mutation_p.D319H|SNORD90_uc004bnf.1_5'Flank	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	319						cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						CAAACCTTATCAATGATAGAC	0.368		NaN											0	0	0	0.004672	0	3	48									
ANGPTL2	23452	broad.mit.edu	37	9	129870633	129870633	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:129870633C>T	uc004bqr.1	-	2	878	c.378G>A	c.(376-378)GAG>GAA	p.E126E	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	126					multicellular organismal development|signal transduction	extracellular space	receptor binding				0						TGTTGCGGCTCTCCTTGCGCA	0.612		NaN											0	0	0	0.001368	0	10	41									
STXBP1	6812	broad.mit.edu	37	9	130434372	130434372	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:130434372C>T	uc004brl.2	+	12	1203	c.1006C>T	c.(1006-1008)CAG>TAG	p.Q336*	STXBP1_uc004brk.2_Nonsense_Mutation_p.Q336*	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	336					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						GAAGATGCCTCAGTACCAGAA	0.473		NaN											0	0	0	0.00333	0	20	69									
TOR2A	27433	broad.mit.edu	37	9	130494388	130494388	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:130494388G>A	uc004brs.3	-	5	946	c.891C>T	c.(889-891)TTC>TTT	p.F297F	TOR2A_uc004brt.3_3'UTR|TOR2A_uc004brw.3_3'UTR|TOR2A_uc011maj.1_3'UTR|TOR2A_uc004bru.3_Silent_p.F135F|TOR2A_uc004brv.3_RNA|TOR2A_uc004brx.1_3'UTR	NM_001085347	NP_001078816	Q5JU69	TOR2A_HUMAN	torsin family 2, member A isoform a	297					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum|extracellular region	ATP binding|nucleoside-triphosphatase activity				0						CTTCAGGGAAGAAGGTGGTGC	0.637		NaN											0	0	0	0.009535	0	28	117									
COQ4	51117	broad.mit.edu	37	9	131087436	131087436	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:131087436C>T	uc004bur.3	+	3	564	c.217C>T	c.(217-219)CTA>TTA	p.L73L	TRUB2_uc004buq.1_5'Flank|COQ4_uc011max.1_Silent_p.L73L|COQ4_uc004bus.2_Silent_p.L49L|COQ4_uc010mxy.2_Silent_p.L49L	NM_016035	NP_057119	Q9Y3A0	COQ4_HUMAN	coenzyme Q4 homolog precursor	73					ubiquinone biosynthetic process	mitochondrial inner membrane					0						GGTCGCAGTTCTAGGGGAGAC	0.438		NaN											0	0	0	0.006214	0	7	35									
WDR34	89891	broad.mit.edu	37	9	131396209	131396209	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:131396209C>G	uc004bvq.1	-	9	1549	c.1425G>C	c.(1423-1425)TTG>TTC	p.L475F	WDR34_uc004bvs.1_Missense_Mutation_p.L466F|WDR34_uc004bvr.1_Missense_Mutation_p.L447F	NM_052844	NP_443076	Q96EX3	WDR34_HUMAN	WD repeat domain 34	475						cytoplasm				central_nervous_system(2)|skin(1)	3						TTTGCTTGATCAAAACTGTGG	0.517		NaN											0	0	0	0.001168	0	5	52									
USP20	10868	broad.mit.edu	37	9	132630421	132630421	+	Silent	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:132630421G>C	uc004bys.2	+	11	1039	c.828G>C	c.(826-828)CGG>CGC	p.R276R	USP20_uc004byr.2_Silent_p.R276R|USP20_uc004byt.1_Silent_p.R276R	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	276					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				AGGGTGACCGGAGCCCATCAG	0.662		NaN											0	0	0	0.007291	0	24	166									
USP20	10868	broad.mit.edu	37	9	132630629	132630629	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:132630629G>A	uc004bys.2	+	11	1247	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	USP20_uc004byr.2_Missense_Mutation_p.E346K|USP20_uc004byt.1_Missense_Mutation_p.E346K	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	346					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				GCAAGTGGACGAGGACGCTGA	0.667		NaN											0	0	0	0.007413	0	18	133									
BAT2L1	84726	broad.mit.edu	37	9	134308165	134308165	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:134308165C>T	uc004can.3	+	2	332	c.277C>T	c.(277-279)CAG>TAG	p.Q93*	BAT2L1_uc004cam.1_Nonsense_Mutation_p.Q93*	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	93							protein binding				0						CAAGCAGGATCAGCAAGACCC	0.562		NaN											0	0	0	0.001368	0	10	74									
DBH	1621	broad.mit.edu	37	9	136501627	136501627	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:136501627G>A	uc004cel.2	+	1	143	c.134G>A	c.(133-135)AGC>AAC	p.S45N		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	45	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CCCCGTGAGAGCCCCCTCCCC	0.647		NaN											0	0	0	0.001855	0	13	58									
DBH	1621	broad.mit.edu	37	9	136507468	136507468	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:136507468C>G	uc004cel.2	+	3	635	c.626C>G	c.(625-627)TCA>TGA	p.S209*		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	209	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	GAGTTGCCCTCAGACGCGTGC	0.602		NaN											0	0	0	0.004672	0	3	45									
GPSM1	26086	broad.mit.edu	37	9	139250941	139250941	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:139250941G>T	uc004chd.2	+	13	1980	c.1760G>T	c.(1759-1761)CGA>CTA	p.R587L	GPSM1_uc011mdu.1_Missense_Mutation_p.R78L|GPSM1_uc004che.2_Missense_Mutation_p.R78L	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	587					cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		GGGCACCTCCGAGGCCACGGC	0.716		NaN											1	0	8.60227e-14	0.004007	9.19089e-14	14	56									
TRAF2	7186	broad.mit.edu	37	9	139794080	139794080	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr9:139794080G>A	uc010nbu.2	+	4	396	c.223G>A	c.(223-225)GAG>AAG	p.E75K	TRAF2_uc010nbv.1_Missense_Mutation_p.E75K|TRAF2_uc004cjv.2_Missense_Mutation_p.E75K|TRAF2_uc011mek.1_Missense_Mutation_p.E64K|TRAF2_uc010nbw.2_Missense_Mutation_p.E75K	NM_021138	NP_066961	Q12933	TRAF2_HUMAN	TNF receptor-associated factor 2	75					activation of caspase activity|activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cellular protein complex assembly|induction of apoptosis by extracellular signals|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|protein autoubiquitination|protein homotrimerization|protein K63-linked ubiquitination|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane	CD40 receptor binding|enzyme binding|protein binding|signal transducer activity|sphingolipid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.229)	OV - Ovarian serous cystadenocarcinoma(145;4.48e-06)|Epithelial(140;9.55e-06)		CTGTGTTCACGAGGGCATATA	0.383		NaN											0	0	0	0.006122	0	15	78									
WWC3	55841	broad.mit.edu	37	X	10106775	10106775	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:10106775C>T	uc004csx.3	+	21	3081	c.2883C>T	c.(2881-2883)CTC>CTT	p.L961L	WWC3_uc010nds.2_Silent_p.L625L|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	961										ovary(4)	4						TGGCTGAGCTCATGGCCCGCA	0.597		NaN											0	0	0	0.001984	0	6	33									
GLRA2	2742	broad.mit.edu	37	X	14708969	14708969	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:14708969G>A	uc010nep.2	+	9	1400	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	GLRA2_uc010neq.2_Silent_p.K356K|GLRA2_uc004cwe.3_Silent_p.K356K|GLRA2_uc011mio.1_Silent_p.K267K|GLRA2_uc011mip.1_Silent_p.K334K	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	356	Cytoplasmic (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	GAAGACAGAAGAGGCAGAATA	0.468		NaN											0	0	0	0.006214	0	7	48									
NHS	4810	broad.mit.edu	37	X	17749980	17749980	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:17749980C>T	uc004cxx.2	+	8	4627	c.4289C>T	c.(4288-4290)TCC>TTC	p.S1430F	NHS_uc011mix.1_Missense_Mutation_p.S1451F|NHS_uc004cxy.2_Missense_Mutation_p.S1274F|NHS_uc004cxz.2_Missense_Mutation_p.S1253F|NHS_uc004cya.2_Missense_Mutation_p.S1153F	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1430						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					TCTCAAAGATCCAAGAGGAAA	0.448		NaN											0	0	0	0.010771	0	37	48									
PDHA1	5160	broad.mit.edu	37	X	19369482	19369482	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:19369482C>T	uc004czg.3	+	4	520	c.375C>T	c.(373-375)TTC>TTT	p.F125F	PDHA1_uc004czh.3_Silent_p.F160F|PDHA1_uc011mjc.1_Silent_p.F129F|PDHA1_uc011mjd.1_Silent_p.F122F|PDHA1_uc010nfk.2_Silent_p.F122F	NM_000284	NP_000275	P08559	ODPA_HUMAN	pyruvate dehydrogenase E1 alpha 1 precursor	125					glycolysis|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	protein binding|pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)	1	Hepatocellular(33;0.183)				NADH(DB00157)	GCTTTACTTTCACCCGGGGCC	0.502		NaN											0	0	0	0.004878	0	26	67									
DDX3X	1654	broad.mit.edu	37	X	41202027	41202027	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:41202027G>C	uc004dfe.2	+	6	1336	c.481G>C	c.(481-483)GAG>CAG	p.E161Q	DDX3X_uc010nhf.1_Missense_Mutation_p.E145Q|DDX3X_uc004dff.2_Missense_Mutation_p.E161Q|DDX3X_uc011mkq.1_Missense_Mutation_p.E145Q|DDX3X_uc011mkr.1_Missense_Mutation_p.E161Q|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	161					interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						GATTAATTTTGAGAAATACGA	0.373		NaN								HNSCC(61;0.18)			0	0	0	0.008871	0	14	55									
DDX3X	1654	broad.mit.edu	37	X	41203033	41203033	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:41203033G>A	uc004dfe.2	+	8	1578	c.723G>A	c.(721-723)CAG>CAA	p.Q241Q	DDX3X_uc010nhf.1_Silent_p.Q225Q|DDX3X_uc004dff.2_Silent_p.Q241Q|DDX3X_uc011mkq.1_Silent_p.Q225Q|DDX3X_uc011mkr.1_Silent_p.Q241Q|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_Intron	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	241	Helicase ATP-binding.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TCTTGAGTCAGATTTATTCAG	0.403		NaN								HNSCC(61;0.18)			0	0	0	0.003163	0	12	40									
PHF16	9767	broad.mit.edu	37	X	46913947	46913947	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:46913947G>A	uc004dgx.2	+	9	1411	c.1360G>A	c.(1360-1362)GAA>AAA	p.E454K	PHF16_uc004dgy.2_Missense_Mutation_p.E454K	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	454					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						GGAGGATGAAGAAAATGGGCT	0.458		NaN											0	0	0	0.009096	0	4	11									
GATA1	2623	broad.mit.edu	37	X	48650256	48650256	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:48650256C>T	uc004dkq.3	+	3	317	c.226C>T	c.(226-228)CAG>TAG	p.Q76*		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	76					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)|p.V74fs*60(1)|p.Q76E(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						AACAGTCTTTCAGGTGTACCC	0.587		NaN	Mis|F		megakaryoblastic leukemia of Downs Syndrome								0	0	0	0.006122	0	14	85									
GATA1	2623	broad.mit.edu	37	X	48650377	48650377	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:48650377C>G	uc004dkq.3	+	3	438	c.347C>G	c.(346-348)TCT>TGT	p.S116C		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	116					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)|p.V77_A120>A(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						CGCGAGGACTCTCCTCCCCAG	0.627		NaN	Mis|F		megakaryoblastic leukemia of Downs Syndrome								0	0	0	0.008871	0	16	49									
GATA1	2623	broad.mit.edu	37	X	48650546	48650546	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:48650546C>A	uc004dkq.3	+	3	607	c.516C>A	c.(514-516)TTC>TTA	p.F172L		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	172					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						CCAGTACCTTCTTTTCTCCCA	0.567		NaN	Mis|F		megakaryoblastic leukemia of Downs Syndrome								1	0	9.31168e-06	0.001855	9.66208e-06	12	33									
GATA1	2623	broad.mit.edu	37	X	48650590	48650590	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:48650590C>T	uc004dkq.3	+	3	651	c.560C>T	c.(559-561)TCT>TTT	p.S187F		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	187					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						GCCTATTCCTCTCCCAAGCTT	0.542		NaN	Mis|F		megakaryoblastic leukemia of Downs Syndrome								0	0	0	0.003163	0	11	35									
DGKK	139189	broad.mit.edu	37	X	50129585	50129585	+	Splice_Site	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:50129585C>G	uc010njr.1	-	15	2179	c.2119_splice	c.e15-1	p.S707_splice		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa						activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TTAAGTCACTCTATATAGAAA	0.483		NaN											0	0	0	0.004672	0	2	9									
SSX7	280658	broad.mit.edu	37	X	52681310	52681310	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:52681310C>T	uc004dqx.1	-	4	431	c.272G>A	c.(271-273)GGG>GAG	p.G91E		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					ACCCTGATTCCCTTGGTTACG	0.517		NaN											0	0	0	0.002299	0	19	77									
PFKFB1	5207	broad.mit.edu	37	X	54975561	54975561	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:54975561C>T	uc004dty.1	-	9	1011	c.940G>A	c.(940-942)GAG>AAG	p.E314K	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Missense_Mutation_p.E249K	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	314	Fructose-2,6-bisphosphatase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						CCCAGGGCCTCAGCTGTCTGG	0.557		NaN											0	0	0	0.00499	0	15	46									
ALAS2	212	broad.mit.edu	37	X	55051212	55051212	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:55051212C>T	uc004dua.3	-	3	381	c.243G>A	c.(241-243)AAG>AAA	p.K81K	ALAS2_uc004dub.3_Silent_p.K105K|ALAS2_uc004dud.3_Silent_p.K81K	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	81					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	CAATCTTGCTCTTCCCATCCT	0.488		NaN											0	0	0	0.004007	0	14	42									
HNRNPH2	3188	broad.mit.edu	37	X	100667669	100667669	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:100667669G>A	uc004ehm.2	+	2	863	c.693G>A	c.(691-693)ATG>ATA	p.M231I	HNRNPH2_uc004ehn.2_Missense_Mutation_p.M231I	NM_019597	NP_062543	P55795	HNRH2_HUMAN	heterogeneous nuclear ribonucleoprotein H2	231					nuclear mRNA splicing, via spliceosome	actin cytoskeleton|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TTGAAAGGATGAGGCGTGGTG	0.522		NaN											0	0	0	0.003954	0	24	58									
MID2	11043	broad.mit.edu	37	X	107169434	107169434	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:107169434G>C	uc004enl.2	+	9	2281	c.1708G>C	c.(1708-1710)GAG>CAG	p.E570Q	MID2_uc004enk.2_Missense_Mutation_p.E540Q	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	570	B30.2/SPRY.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						CCACACCCCAGAGAGGTTTAG	0.468		NaN											0	0	0	0.010729	0	11	30									
TMEM164	84187	broad.mit.edu	37	X	109416484	109416484	+	Silent	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:109416484G>A	uc004eom.2	+	7	1018	c.699G>A	c.(697-699)GTG>GTA	p.V233V	TMEM164_uc004eol.2_Silent_p.V84V|TMEM164_uc010npq.2_Silent_p.V194V|TMEM164_uc004eon.1_5'Flank	NM_032227	NP_115603	Q5U3C3	TM164_HUMAN	transmembrane protein 164 isoform b	233						integral to membrane				large_intestine(1)|lung(1)|skin(1)	3						TCACCGAAGTGAATTTGAACA	0.557		NaN											0	0	0	0.00632	0	23	79									
DCX	1641	broad.mit.edu	37	X	110653275	110653275	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:110653275C>T	uc004epd.2	-	2	767	c.595G>A	c.(595-597)GAA>AAA	p.E199K	DCX_uc011msv.1_Missense_Mutation_p.E199K|DCX_uc004epe.2_Missense_Mutation_p.E118K|DCX_uc004epf.2_Missense_Mutation_p.E118K|DCX_uc004epg.2_Missense_Mutation_p.E118K	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	199	Doublecortin 1.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						TCCTCCAGTTCATCCATGCTT	0.468		NaN											0	0	0	0.003163	0	13	50									
GPC4	2239	broad.mit.edu	37	X	132440162	132440162	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:132440162C>G	uc004exc.1	-	5	1110	c.898G>C	c.(898-900)GAG>CAG	p.E300Q	GPC4_uc011mvg.1_Missense_Mutation_p.E230Q	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	300					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					TCTAGCCTCTCTGCCACCATC	0.393		NaN											0	0	0	0.006122	0	17	82									
MAGEC2	51438	broad.mit.edu	37	X	141291072	141291072	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:141291072C>T	uc004fbu.1	-	3	1050	c.702G>A	c.(700-702)CTG>CTA	p.L234L		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	234	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGATCACACTCAGAATAATAA	0.512		NaN								HNSCC(46;0.14)			0	0	0	0.010504	0	16	94									
AFF2	2334	broad.mit.edu	37	X	148037319	148037319	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:148037319G>A	uc004fcp.2	+	11	2223	c.1744G>A	c.(1744-1746)GAA>AAA	p.E582K	AFF2_uc004fcq.2_Missense_Mutation_p.E572K|AFF2_uc004fcr.2_Missense_Mutation_p.E543K|AFF2_uc011mxb.1_Missense_Mutation_p.E547K|AFF2_uc004fcs.2_Missense_Mutation_p.E549K|AFF2_uc011mxc.1_Missense_Mutation_p.E223K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	582					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GGTCCCAGCTGAACCCAAAGA	0.478		NaN											0	0	0	0.012319	0	19	74									
SLC6A8	6535	broad.mit.edu	37	X	152958597	152958597	+	Silent	SNP	C	C	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:152958597C>G	uc004fib.3	+	5	1157	c.879C>G	c.(877-879)CTC>CTG	p.L293L	SLC6A8_uc004fic.3_Silent_p.L293L|SLC6A8_uc011myx.1_Silent_p.L178L|SLC6A8_uc010nuj.2_RNA	NM_005629	NP_005620	P48029	SC6A8_HUMAN	solute carrier family 6 member 8 isoform 1	293	Extracellular (Potential).				creatine metabolic process|muscle contraction	integral to plasma membrane	creatine:sodium symporter activity|neurotransmitter:sodium symporter activity			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Creatine(DB00148)	TTTACTATCTCAAGCCTGACT	0.632		NaN											0	0	0	0.000602	0	5	9									
FAM50A	9130	broad.mit.edu	37	X	153674218	153674218	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:153674218G>C	uc004fll.3	+	3	353	c.255G>C	c.(253-255)GAG>GAC	p.E85D		NM_004699	NP_004690	Q14320	FA50A_HUMAN	XAP-5 protein	85					spermatogenesis	nucleus				ovary(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGGAGCGGGAGAAGCAGCTGG	0.607		NaN											0	0	0	0.010729	0	9	25									
F8	2157	broad.mit.edu	37	X	154088779	154088779	+	Silent	SNP	C	C	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrX:154088779C>T	uc004fmt.2	-	25	6999	c.6828G>A	c.(6826-6828)GTG>GTA	p.V2276V	F8_uc004fms.2_Silent_p.V141V	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2276	F5/8 type C 2.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGAACTCCTTCACATACATGC	0.418		NaN											0	0	0	0.004007	0	14	60									
TBL1Y	90665	broad.mit.edu	37	Y	6954349	6954349	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrY:6954349G>A	uc004frb.2	+	16	1818	c.1171G>A	c.(1171-1173)GAT>AAT	p.D391N	TBL1Y_uc004frc.2_Missense_Mutation_p.D391N|TBL1Y_uc004frd.2_Missense_Mutation_p.D391N|TBL1Y_uc011nap.1_Missense_Mutation_p.D233N	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	391	WD 5.				transcription, DNA-dependent						0						TATGAAGCAGGATGCATGCGT	0.547		NaN											0	0	0	0.00499	0	15	43									
KCNN3	3782	broad.mit.edu	37	1	154680586	154680588	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr1:154680586_154680588delGCT	uc001ffp.2	-	8	2374_2376	c.2060_2062delAGC	c.(2059-2064)CAGCTC>CTC	p.Q687del	KCNN3_uc001ffo.2_In_Frame_Del_p.Q382del	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	692	Poly-Gln.					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GCAGACAGGAGCTGCTGCTGCTG	0.64		NaN											NaN	NaN	NaN	NaN	NaN	7	174	---	---							
GLTSCR1	29998	broad.mit.edu	37	19	48197472	48197473	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr19:48197472_48197473insC	uc002phh.3	+	8	2578_2579	c.2384_2385insC	c.(2383-2385)CACfs	p.H795fs	GLTSCR1_uc002phi.3_Frame_Shift_Ins_p.H553fs	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	795							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		CCCTCCCCACACCCCACCCGGC	0.748		NaN											NaN	NaN	NaN	NaN	NaN	2	4	---	---							
C2orf16	84226	broad.mit.edu	37	2	27804926	27804927	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr2:27804926_27804927insTC	uc002rkz.3	+	1	5538_5539	c.5487_5488insTC	c.(5485-5490)AGATCTfs	p.R1829fs	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1829_1830	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTGAGAGGAGATCTCACAGGTC	0.55		NaN											NaN	NaN	NaN	NaN	NaN	11	49	---	---							
EP300	2033	broad.mit.edu	37	22	41560132	41560133	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			-	G	-	-		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr22:41560132_41560133insG	uc003azl.3	+	22	4199_4200	c.3804_3805insG	c.(3802-3807)GCTGGAfs	p.A1268fs		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1268_1269					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						TCTGGCCTGCTGGGTAAGTCTT	0.371		NaN	T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				NaN	NaN	NaN	NaN	NaN	20	164	---	---							
CDKN1A	1026	broad.mit.edu	37	6	36652207	36652208	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08			-	T	-	-		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:36652207_36652208insT	uc003omm.3	+	2	451_452	c.329_330insT	c.(328-330)CATfs	p.H110fs	CDKN1A_uc011dtq.1_Frame_Shift_Ins_p.H144fs|CDKN1A_uc003oml.2_Frame_Shift_Ins_p.H110fs|CDKN1A_uc003omn.2_Frame_Shift_Ins_p.H110fs	NM_000389	NP_000380	P38936	CDN1A_HUMAN	cyclin-dependent kinase inhibitor 1A	110					cell cycle arrest|cellular response to extracellular stimulus|cellular response to ionizing radiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|induction of apoptosis by intracellular signals|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of fibroblast proliferation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|S phase of mitotic cell cycle|stress-induced premature senescence	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleoplasm|PCNA-p21 complex	cyclin-dependent protein kinase activating kinase activity|cyclin-dependent protein kinase inhibitor activity|metal ion binding			ovary(1)|breast(1)	2						GAGGAAGACCATGTGGACCTGT	0.658		NaN							Multiple_Endocrine_Neoplasia_type_1				NaN	NaN	NaN	NaN	NaN	14	16	---	---							
EZR	7430	broad.mit.edu	37	6	159210405	159210406	+	Splice_Site	INS	-	-	A			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chr6:159210405_159210406insA	uc003qrt.3	-	2	228	c.13_splice	c.e2-1	p.I5_splice	EZR_uc011efs.1_Splice_Site_p.I5_splice|EZR_uc003qru.3_Splice_Site_p.I5_splice	NM_003379	NP_003370	P15311	EZRI_HUMAN	ezrin						actin filament bundle assembly|axon guidance|cytoskeletal anchoring at plasma membrane|leukocyte cell-cell adhesion|membrane to membrane docking|regulation of cell shape	actin filament|apical plasma membrane|basolateral plasma membrane|cortical cytoskeleton|cytosol|extrinsic to membrane|filopodium|microvillus membrane|nucleolus|ruffle membrane	actin filament binding|cell adhesion molecule binding			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-17)|BRCA - Breast invasive adenocarcinoma(81;6.58e-06)		GACATTGATCTGAAAAACAGAA	0.426		NaN											NaN	NaN	NaN	NaN	NaN	8	40	---	---							
KDM5D	8284	broad.mit.edu	37	Y	21868143	21868143	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DK-A2I4-01A-11D-A21A-08	TCGA-DK-A2I4-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d68074b8-ce96-4dc5-b14c-3bbc7ba92ad9	6e6b0a28-322f-43a0-8abe-bff1727ae6b7	g.chrY:21868143delT	uc004fug.2	-	27	4646	c.4358delA	c.(4357-4359)AACfs	p.N1453fs	KDM5D_uc011naz.1_Frame_Shift_Del_p.N1484fs|KDM5D_uc010nwy.2_Frame_Shift_Del_p.N1396fs|KDM5D_uc004fuf.2_Frame_Shift_Del_p.N628fs	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	1453					chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	ATTCTCAACGTTTCTACCCTG	0.512		NaN											NaN	NaN	NaN	NaN	NaN	2	4	---	---							
