Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	bcgsc.ca	37	7	48284250	48284250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ABCA13	NM_152701	exon11	c.T1340C	p.L447P	.	.	75	4	86	0	.	521
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48315045	48315045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ABCA13	NM_152701	exon17	c.G5782T	p.V1928F	.	.	222	106	280	0	.	521
ABCB11	8647	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169850303	169850303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ABCB11	NM_003742	exon8	c.G701T	p.G234V	.	.	154	71	231	3	.	139
ACACB	32	bcgsc.ca	37	12	109577354	109577354	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ACACB	NM_001093	exon1	c.T144C	p.F48F	.	.	114	28	233	19	.	98
ACAD11	84129	bcgsc.ca	37	3	132349333	132349333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ACAD11	NM_032169	exon7	c.A911G	p.N304S	.	.	126	5	236	0	.	91
ACTR6	64431	ucsc.edu;bcgsc.ca	37	12	100594696	100594696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ACTR6	NM_022496	exon1	c.T67C	p.S23P	.	.	46	4	98	0	.	91
ADAM19	8728	bcgsc.ca	37	5	156918863	156918863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ADAM19	NM_033274	exon17	c.A1966G	p.K656E	.	.	134	6	168	1	.	294
ADAMTS13	11093	bcgsc.ca	37	9	136321797	136321797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ADAMTS13	NM_139025	exon27	c.T3848C	p.L1283P	.	.	67	6	100	3	.	229
ADAMTS20	80070	bcgsc.ca	37	12	43846449	43846449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ADAMTS20	NM_025003	exon13	c.T1810C	p.S604P	.	.	70	4	125	0	.	795
ADCK2	90956	bcgsc.ca	37	7	140374529	140374529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ADCK2	NM_052853	exon2	c.A1052G	p.E351G	.	.	169	14	255	5	.	333
ADK	132	bcgsc.ca	37	10	76158275	76158275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ADK	NM_001202450	exon6	c.A493G	p.K165E	.	.	111	5	253	0	.	228
AEBP1	165	ucsc.edu;bcgsc.ca	37	7	44147093	44147093	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	AEBP1	NM_001129	exon3	c.A651G	p.A217A	.	.	59	5	66	0	.	90
AGGF1	55109	bcgsc.ca	37	5	76357581	76357581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	AGGF1	NM_018046	exon13	c.A1898G	p.K633R	.	.	148	5	201	0	.	117
AKIP1	56672	bcgsc.ca	37	11	8941016	8941016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	AKIP1	NM_020642	exon6	c.T622C	p.F208L	.	.	148	5	382	0	.	492
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4082167	4082167	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ANKFY1	NM_001257999	exon18	c.C2709T	p.S903S	.	.	85	20	135	0	.	93
ANKRD17	26057	bcgsc.ca	37	4	73957183	73957183	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ANKRD17	NM_032217	exon29	c.G6162A	p.G2054G	.	.	96	5	117	0	.	234
ANKRD30BL	554226	bcgsc.ca	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	269	17	327	11	.	.
ANKRD30BP2	149992	bcgsc.ca	37	21	14469740	14469740	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	13	4	18	0	.	.
ANKRD32	84250	bcgsc.ca	37	5	94006561	94006561	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ANKRD32	NM_032290	exon14	c.T1675G	p.S559A	.	.	122	19	250	8	.	92
ANKS1B	56899	broad.mit.edu;bcgsc.ca	37	12	100200337	100200337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_152788	exon4	c.G514A	p.G172R	.	.	213	6	323	0	.	.
ANXA11	311	ucsc.edu	37	10	81927012	81927012	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ANXA11	NM_145868	exon6	c.G619T	p.E207X	.	.	28	4	41	0	.	91
AP1G1	164	bcgsc.ca	37	16	71792801	71792801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	AP1G1	NM_001030007	exon12	c.T1007C	p.L336S	.	.	137	5	218	0	.	92
APC	324	bcgsc.ca	37	5	112178335	112178335	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	APC	NM_001127510	exon17	c.A7044G	p.T2348T	.	.	70	4	128	1	.	12026
API5	8539	ucsc.edu;bcgsc.ca	37	11	43364048	43364048	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	API5	NM_001142930	exon14	c.A1563G	p.G521G	.	.	36	5	59	1	.	136
ARAP1	116985	bcgsc.ca	37	11	72406855	72406855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARAP1	NM_001040118	exon24	c.T3328C	p.F1110L	.	.	123	5	178	1	.	91
ARFIP2	23647	bcgsc.ca	37	11	6498962	6498962	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARFIP2	NM_001242854	exon7	c.C955T	p.L319L	.	.	53	4	99	0	.	90
ARHGAP19	84986	bcgsc.ca	37	10	98995048	98995048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARHGAP19	NM_032900	exon9	c.A1210G	p.T404A	.	.	74	4	169	0	.	651
ARHGEF12	23365	bcgsc.ca	37	11	120319879	120319879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARHGEF12	NM_015313	exon21	c.T1799C	p.I600T	.	.	62	4	103	1	.	661
ARHGEF1	9138	ucsc.edu	37	19	42402725	42402725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARHGEF1	NM_199002	exon14	c.A1301G	p.E434G	.	.	56	11	57	6	.	293
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63817024	63817024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARID5B	NM_032199	exon6	c.T995C	p.M332T	.	.	72	52	166	0	.	94
ARMC3	219681	bcgsc.ca	37	10	23295830	23295830	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ARMC3	NM_173081	exon14	c.A1749G	p.K583K	.	.	55	4	57	0	.	90
ASB14	142686	bcgsc.ca	37	3	57317437	57317437	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ASB14	NM_001142733	exon6	c.C500G	p.A167G	.	.	88	21	189	12	.	226
ASB16-AS1	339201	bcgsc.ca	37	17	42254837	42254837	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	65	4	67	1	.	.
ASCC3	10973	bcgsc.ca	37	6	101163359	101163359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ASCC3	NM_006828	exon13	c.G2130T	p.K710N	.	.	46	4	248	0	.	96
ASXL3	80816	bcgsc.ca	37	18	31226229	31226229	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ASXL3	NM_030632	exon4	c.A267G	p.P89P	.	.	70	4	117	0	.	49
ATF1	466	bcgsc.ca	37	12	51207970	51207970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ATF1	NM_005171	exon5	c.T506C	p.V169A	.	.	118	5	232	0	.	685
ATP13A4	84239	bcgsc.ca	37	3	193175216	193175216	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ATP13A4	NM_032279	exon15	c.A1713G	p.G571G	.	.	178	7	313	1	.	92
ATP2B1	490	bcgsc.ca	37	12	90049593	90049593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ATP2B1	NM_001001323	exon1	c.A71G	p.D24G	.	.	128	5	232	0	.	516
ATR	545	bcgsc.ca	37	3	142242916	142242916	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ATR	NM_001184	exon22	c.T4071C	p.C1357C	.	.	119	6	210	1	.	1139
ATRX	546	bcgsc.ca	37	X	76931761	76931761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ATRX	NM_000489	exon10	c.A3769G	p.T1257A	.	.	167	7	312	0	.	248
BAG6	7917	bcgsc.ca	37	6	31617373	31617373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BAG6	NM_080702	exon3	c.C140T	p.A47V	.	.	142	5	224	0	.	154
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52440340	52440348	+	In_Frame_Del	DEL	TGCGGTCGG	TGCGGTCGG	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	TGCGGTCGG	TGCGGTCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BAP1	NM_004656	exon9	c.704_712del	p.235_238del	.	.	37	16	112	0	.	1032
BAZ1A	11177	bcgsc.ca	37	14	35231122	35231122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BAZ1A	NM_013448	exon24	c.A4084G	p.K1362E	.	.	411	47	953	33	.	291
BAZ1A	11177	bcgsc.ca	37	14	35243554	35243554	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BAZ1A	NM_013448	exon19	c.A2976G	p.Q992Q	.	.	60	4	133	0	.	291
BGN	633	bcgsc.ca	37	X	152772348	152772348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BGN	NM_001711	exon6	c.T737C	p.L246P	.	.	90	4	84	0	.	193
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50653812	50653812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BMP15	NM_005448	exon1	c.T29G	p.L10R	.	.	236	47	269	0	.	132
BMP5	653	bcgsc.ca	37	6	55739604	55739604	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BMP5	NM_021073	exon1	c.T60C	p.V20V	.	.	88	4	135	0	.	516
BMS1	9790	bcgsc.ca	37	10	43326489	43326489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BMS1	NM_014753	exon23	c.A3794G	p.K1265R	.	.	230	7	276	0	.	93
BNIPL	149428	bcgsc.ca	37	1	151011461	151011461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BNIPL	NM_138278	exon4	c.A392G	p.D131G	.	.	123	5	161	0	.	227
BOD1L1	259282	bcgsc.ca	37	4	13603679	13603679	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_148894	exon10	c.T4845C	p.S1615S	.	.	78	4	151	2	.	.
BRSK1	84446	bcgsc.ca	37	19	55816869	55816869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BRSK1	NM_032430	exon16	c.T1805C	p.L602S	.	.	102	5	115	0	.	759
BST1	683	bcgsc.ca	37	4	15717347	15717347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BST1	NM_004334	exon6	c.A629G	p.E210G	.	.	105	5	176	1	.	90
BTRC	8945	bcgsc.ca	37	10	103294643	103294643	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BTRC	NM_033637	exon10	c.T1323C	p.S441S	.	.	66	4	143	0	.	659
BZRAP1	9256	bcgsc.ca	37	17	56386653	56386653	+	Missense_Mutation	SNP	T	T	C	rs145479305	alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BZRAP1	NM_004758	exon22	c.A3980G	p.K1327R	.	.	68	4	75	0	T|1.000;G|0.000	229
BZW1	9689	bcgsc.ca	37	2	201685936	201685936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	BZW1	NM_001207068	exon11	c.A1232G	p.K411R	.	.	65	4	115	0	.	90
C11orf84	144097	ucsc.edu	37	11	63585515	63585515	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	C11orf84	NM_138471	exon2	c.T366C	p.P122P	.	.	45	4	96	0	.	90
C14orf37	145407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58605153	58605153	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	C14orf37	NM_001001872	exon2	c.T924A	p.S308S	.	.	98	45	227	0	.	90
C16orf62	57020	bcgsc.ca	37	16	19648958	19648958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	C16orf62	NM_020314	exon20	c.T1945C	p.F649L	.	.	93	4	172	0	.	69
C7orf66	154907	bcgsc.ca	37	7	108524258	108524258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	C7orf66	NM_001024607	exon2	c.T154C	p.F52L	.	.	141	5	167	1	.	92
C8orf34	116328	bcgsc.ca	37	8	69351823	69351823	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	C8orf34	NM_052958	exon2	c.A417G	p.G139G	.	.	80	4	141	0	.	153
CACNA1D	776	bcgsc.ca	37	3	53834390	53834390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CACNA1D	NM_000720	exon42	c.A5098G	p.K1700E	.	.	76	4	189	0	.	100
CADPS	8618	bcgsc.ca	37	3	62739175	62739175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CADPS	NM_003716	exon3	c.T829C	p.F277L	.	.	73	4	167	0	.	281
CAMK1D	57118	bcgsc.ca	37	10	12391899	12391899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CAMK1D	NM_153498	exon1	c.A82G	p.T28A	.	.	82	5	88	0	.	334
CAMTA1	23261	bcgsc.ca	37	1	7798463	7798463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CAMTA1	NM_015215	exon16	c.A4103G	p.E1368G	.	.	84	4	171	0	.	520
CAPRIN2	65981	bcgsc.ca	37	12	30863385	30863385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CAPRIN2	NM_032156	exon18	c.T2876C	p.L959P	.	.	64	4	127	1	.	92
CARS2	79587	bcgsc.ca	37	13	111353801	111353801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CARS2	NM_024537	exon3	c.T377C	p.I126T	.	.	130	5	240	0	.	90
CAST	831	bcgsc.ca	37	5	96106256	96106256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CAST	NM_001042440	exon28	c.T2167C	p.S723P	.	.	87	4	135	1	.	517
CCDC135	84229	bcgsc.ca	37	16	57761210	57761210	+	Splice_Site	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCDC135	NM_032269	exon15	c.2086-1G>T	.	.	.	44	4	91	0	.	90
CCDC147	159686	bcgsc.ca	37	10	106166521	106166521	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCDC147	NM_001008723	exon15	c.A2226G	p.E742E	.	.	68	4	173	0	.	71
CCDC148	130940	bcgsc.ca	37	2	159166024	159166024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCDC148	NM_138803	exon9	c.G1031T	p.C344F	.	.	332	57	511	30	.	70
CCDC42	146849	bcgsc.ca	37	17	8633470	8633470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCDC42	NM_144681	exon7	c.A929G	p.E310G	.	.	87	4	84	0	.	91
CCDC70	83446	bcgsc.ca	37	13	52440044	52440044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCDC70	NM_031290	exon2	c.T530C	p.L177P	.	.	44	4	104	0	.	90
CCDC85A	114800	bcgsc.ca	37	2	56420346	56420351	+	In_Frame_Del	DEL	GCATCT	GCATCT	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	GCATCT	GCATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCDC85A	NM_001080433	exon2	c.1011_1016del	p.337_339del	.	.	69	3	89	0	.	73
CCP110	9738	bcgsc.ca	37	16	19547285	19547285	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CCP110	NM_001199022	exon4	c.T294C	p.S98S	.	.	73	4	160	0	.	90
CD109	135228	bcgsc.ca	37	6	74475701	74475701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CD109	NM_133493	exon11	c.A1156G	p.R386G	.	.	122	5	207	0	.	155
CD163	9332	bcgsc.ca	37	12	7635979	7635979	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CD163	NM_203416	exon12	c.T3072C	p.A1024A	.	.	103	5	148	0	.	98
CD69	969	bcgsc.ca	37	12	9906173	9906173	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CD69	NM_001781	exon5	c.A504G	p.T168T	.	.	96	4	202	1	.	90
CDC42BPA	8476	bcgsc.ca	37	1	227335241	227335241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CDC42BPA	NM_003607	exon7	c.T713G	p.V238G	.	.	87	17	116	3	.	549
CDH3	1001	bcgsc.ca	37	16	68721583	68721583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CDH3	NM_001793	exon12	c.A1739G	p.Q580R	.	.	80	4	102	0	.	950
CELA1	1990	bcgsc.ca	37	12	51739580	51739580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CELA1	NM_001971	exon2	c.A98G	p.Q33R	.	.	48	4	56	0	.	153
CELF4	56853	bcgsc.ca	37	18	34854357	34854357	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CELF4	NM_001025087	exon6	c.C718A	p.R240R	.	.	69	4	85	0	.	92
CENPE	1062	broad.mit.edu;bcgsc.ca	37	4	104066757	104066757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CENPE	NM_001813	exon31	c.A4495G	p.N1499D	.	.	131	5	286	0	.	277
CENPL	91687	bcgsc.ca	37	1	173776427	173776427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CENPL	NM_001127181	exon4	c.A398G	p.D133G	.	.	192	6	337	2	.	90
CENPO	79172	bcgsc.ca	37	2	25022547	25022547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CENPO	NM_024322	exon3	c.T50C	p.V17A	.	.	90	4	90	0	.	91
CHD2	1106	bcgsc.ca	37	15	93543840	93543840	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CHD2	NM_001271	exon32	c.A4107G	p.S1369S	.	.	63	4	118	1	.	229
CHD6	84181	bcgsc.ca	37	20	40126835	40126835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CHD6	NM_032221	exon7	c.A947G	p.E316G	.	.	222	6	334	0	.	238
CHUK	1147	bcgsc.ca	37	10	101964948	101964948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CHUK	NM_001278	exon12	c.A1240G	p.S414G	.	.	80	4	129	1	.	961
CHUK	1147	bcgsc.ca	37	10	101978782	101978782	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CHUK	NM_001278	exon7	c.T672C	p.H224H	.	.	77	4	195	0	.	961
CIR1	9541	bcgsc.ca	37	2	175213427	175213427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CIR1	NM_004882	exon10	c.A1151G	p.E384G	.	.	274	37	408	29	.	153
CLMN	79789	bcgsc.ca	37	14	95670493	95670493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CLMN	NM_024734	exon9	c.T1193C	p.I398T	.	.	94	5	230	0	.	90
CLUH	23277	bcgsc.ca	37	17	2597456	2597456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_015229	exon18	c.T2935C	p.F979L	.	.	63	5	66	0	.	.
CNGA3	1261	bcgsc.ca	37	2	98996713	98996713	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CNGA3	NM_001298	exon4	c.T291C	p.S97S	.	.	69	4	100	0	.	96
CNIH4	29097	broad.mit.edu	37	1	224548225	224548225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CNIH4	NM_014184	exon2	c.A98G	p.D33G	.	.	401	8	629	0	.	91
COX2	5743	bcgsc.ca	37	MT	7609	7609	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	ENST00000361739	exon1	c.T24C	p.G8G	.	.	153	7	495	6	.	.
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	8184	8184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	ENST00000361739	exon1	c.G599A	p.C200Y	.	.	167	13	519	0	.	.
CPD	1362	bcgsc.ca	37	17	28782472	28782472	+	Missense_Mutation	SNP	C	C	A	rs76006071		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CPD	NM_001304	exon15	c.C3321A	p.D1107E	.	.	242	53	410	39	.	92
CR1	1378	bcgsc.ca	37	1	207762121	207762121	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CR1	NM_000573	exon27	c.4460+2T>C	.	.	.	85	5	135	0	.	93
CROCCP2	84809	broad.mit.edu;ucsc.edu	37	1	16957414	16957414	+	RNA	SNP	C	C	T	rs2296161	byfrequency	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	28	6	35	0	C|0.826;T|0.174	.
CROCCP2	84809	ucsc.edu	37	1	16957307	16957307	+	RNA	SNP	C	C	T	rs2296162	byfrequency	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	14	4	16	0	C|0.333;T|0.667	.
CRSP8P	0	ucsc.edu;bcgsc.ca	37	5	79646957	79646957	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	56	13	63	0	.	.
CSMD3	114788	bcgsc.ca	37	8	113812498	113812498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CSMD3	NM_198123	exon13	c.C1865A	p.T622N	.	.	66	4	96	0	.	1132
CUL2	8453	bcgsc.ca	37	10	35317810	35317810	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CUL2	NM_001198778	exon16	c.T1602G	p.G534G	.	.	266	32	417	13	.	229
CUL3	8452	bcgsc.ca	37	2	225360591	225360591	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CUL3	NM_001257198	exon13	c.C1818T	p.T606T	.	.	118	6	222	0	.	229
CUL4A	8451	bcgsc.ca	37	13	113882294	113882294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CUL4A	NM_001008895	exon4	c.T373C	p.S125P	.	.	19	4	86	0	.	651
CXCR7	57007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	237489915	237489915	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CXCR7	NM_020311	exon2	c.C807T	p.H269H	.	.	111	23	141	0	.	1145
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	83128315	83128316	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CYLC1	NM_021118	exon4	c.599_600del	p.200_200del	.	.	256	79	435	0	.	112
CYP2C18	1562	bcgsc.ca	37	10	96484288	96484288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CYP2C18	NM_000772	exon7	c.A1147G	p.K383E	.	.	75	4	170	1	.	95
CYP3A43	64816	bcgsc.ca	37	7	99461293	99461293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	CYP3A43	NM_022820	exon12	c.T1390C	p.F464L	.	.	134	5	172	0	.	92
CYP4Z2P	163720	bcgsc.ca	37	1	47333739	47333739	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	110	5	177	0	.	.
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15276	15276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	ENST00000361789	exon1	c.G530A	p.R177Q	.	.	165	158	497	1	.	.
DAAM1	23002	bcgsc.ca	37	14	59730284	59730284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DAAM1	NM_001270520	exon2	c.T89C	p.L30P	.	.	91	4	219	0	.	227
DBH	1621	bcgsc.ca	37	9	136516850	136516850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DBH	NM_000787	exon7	c.G1286T	p.R429L	.	.	81	4	75	0	.	516
DCHS2	54798	bcgsc.ca	37	4	155256251	155256251	+	Missense_Mutation	SNP	T	T	C	rs138413336		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DCHS2	NM_001142552	exon4	c.A2482G	p.I828V	.	.	67	4	125	0	T|1.000;C|0.000	94
DDHD2	23259	bcgsc.ca	37	8	38111176	38111176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DDHD2	NM_001164232	exon16	c.A1994G	p.E665G	.	.	116	5	316	0	.	91
DDX21	9188	bcgsc.ca	37	10	70725184	70725184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DDX21	NM_004728	exon5	c.T838C	p.F280L	.	.	65	4	136	0	.	228
DDX27	55661	bcgsc.ca	37	20	47845320	47845320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DDX27	NM_017895	exon8	c.A868G	p.T290A	.	.	98	5	138	1	.	537
DDX46	9879	bcgsc.ca	37	5	134099727	134099727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DDX46	NM_014829	exon2	c.A151G	p.R51G	.	.	79	4	100	1	.	227
DDX47	51202	bcgsc.ca	37	12	12976183	12976183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DDX47	NM_201224	exon7	c.C680T	p.A227V	.	.	82	4	153	0	.	226
DEPDC1B	55789	bcgsc.ca	37	5	59894960	59894960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DEPDC1B	NM_018369	exon10	c.A1370G	p.E457G	.	.	243	6	367	2	.	91
DHX40	79665	bcgsc.ca	37	17	57647920	57647920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DHX40	NM_024612	exon3	c.A322G	p.K108E	.	.	131	6	215	0	.	226
DHX57	90957	bcgsc.ca	37	2	39088202	39088202	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DHX57	NM_198963	exon5	c.T1350C	p.N450N	.	.	205	35	343	15	.	228
DICER1	23405	bcgsc.ca	37	14	95595899	95595899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DICER1	NM_030621	exon7	c.A644G	p.D215G	.	.	123	5	223	0	.	961
DIDO1	11083	bcgsc.ca	37	20	61525527	61525527	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DIDO1	NM_080797	exon12	c.A2592G	p.E864E	.	.	67	4	121	0	.	96
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	460026	460026	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DIP2C	NM_014974	exon8	c.884delC	p.P295fs	.	.	69	24	58	0	.	156
DLGAP1	9229	bcgsc.ca	37	18	3508620	3508620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DLGAP1	NM_001242761	exon11	c.T2519C	p.L840P	.	.	85	4	159	0	.	229
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44684030	44684030	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DMAP1	NM_001034023	exon5	c.C441T	p.L147L	.	.	143	38	306	0	.	226
DMBT1	1755	bcgsc.ca	37	10	124395619	124395619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DMBT1	NM_007329	exon50	c.T6274C	p.S2092P	.	.	121	6	264	2	.	494
DMD	1756	bcgsc.ca	37	X	32834725	32834725	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DMD	NM_004006	exon6	c.A390G	p.G130G	.	.	311	42	430	16	.	265
DMD	1756	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	32486707	32486707	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DMD	NM_004006	exon23	c.G3070T	p.E1024X	.	.	577	89	794	2	.	265
DNAH11	8701	bcgsc.ca	37	7	21598494	21598494	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DNAH11	.	.	.	.	.	.	173	6	176	2	.	146
DNAH12	201625	bcgsc.ca	37	3	57488112	57488112	+	Missense_Mutation	SNP	T	T	C	rs201467767	alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DNAH12	NM_198564	exon10	c.A1181G	p.D394G	.	.	137	6	262	1	T|1.000;A|0.000	47
DNAJC21	134218	bcgsc.ca	37	5	34954802	34954802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DNAJC21	NM_194283	exon13	c.A1714G	p.K572E	.	.	238	7	409	1	.	154
DNHD1	144132	bcgsc.ca	37	11	6589723	6589723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DNHD1	NM_144666	exon38	c.C12578A	p.P4193H	.	.	86	4	189	0	.	24
DOCK2	1794	bcgsc.ca	37	5	169188561	169188561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DOCK2	NM_004946	exon25	c.T2486C	p.V829A	.	.	182	6	183	0	.	97
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3494941	3494941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DOK7	NM_173660	exon7	c.A1228G	p.S410G	.	.	45	4	32	0	.	91
DPP8	54878	bcgsc.ca	37	15	65772712	65772712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DPP8	NM_197960	exon11	c.T1192C	p.S398P	.	.	67	4	91	0	.	91
DSC3	1825	bcgsc.ca	37	18	28604439	28604439	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DSC3	NM_024423	exon6	c.T651C	p.T217T	.	.	77	4	137	1	.	94
DSCR3	10311	bcgsc.ca	37	21	38597865	38597865	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DSCR3	NM_006052	exon8	c.C874T	p.L292L	.	.	59	4	94	0	.	90
DSPP	1834	bcgsc.ca	37	4	88536052	88536052	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DSPP	NM_014208	exon5	c.C2238T	p.S746S	.	.	205	9	299	4	.	90
DSPP	1834	bcgsc.ca	37	4	88537457	88537457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DSPP	NM_014208	exon5	c.G3643A	p.D1215N	.	.	138	9	174	0	.	90
DTX2	113878	bcgsc.ca	37	7	76110079	76110079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DTX2	NM_001102596	exon1	c.T253C	p.F85L	.	.	78	4	91	0	.	524
DTX3L	151636	ucsc.edu;bcgsc.ca	37	3	122288722	122288722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DTX3L	NM_138287	exon3	c.T1786C	p.C596R	.	.	43	4	93	0	.	587
DUSP9	1852	hgsc.bcm.edu;broad.mit.edu	37	X	152914788	152914788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DUSP9	NM_001395	exon3	c.G475A	p.V159M	.	.	100	12	117	0	.	660
DYNC1H1	1778	bcgsc.ca	37	14	102452062	102452062	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	DYNC1H1	NM_001376	exon8	c.T1500C	p.P500P	.	.	85	5	167	0	.	98
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184001717	184001717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ECE2	NM_014693	exon8	c.G1315A	p.D439N	.	.	164	30	168	0	.	94
EEF1A1	1915	bcgsc.ca	37	6	74229084	74229084	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EEF1A1	NM_001402	exon3	c.A300G	p.K100K	.	.	47	4	82	0	.	226
EEF2	1938	bcgsc.ca	37	19	3983227	3983227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EEF2	NM_001961	exon3	c.A281G	p.D94G	.	.	93	6	100	1	.	90
EFCAB5	374786	broad.mit.edu	37	17	28380486	28380486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EFCAB5	NM_198529	exon10	c.C1514T	p.P505L	.	.	157	5	244	0	.	70
EFHC1	114327	bcgsc.ca	37	6	52317536	52317536	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EFHC1	NM_018100	exon4	c.T624C	p.A208A	.	.	82	4	131	1	.	93
EFTUD2	9343	bcgsc.ca	37	17	42940081	42940081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EFTUD2	NM_004247	exon16	c.G1607A	p.R536K	.	.	80	4	83	0	.	91
EPHB1	2047	bcgsc.ca	37	3	134960044	134960044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EPHB1	NM_004441	exon13	c.T2401C	p.F801L	.	.	92	4	142	1	.	1492
ERG	2078	bcgsc.ca	37	21	39763603	39763603	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ERG	NM_001243432	exon10	c.T870C	p.T290T	.	.	97	4	152	0	.	848
ESYT3	83850	bcgsc.ca	37	3	138180944	138180944	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ESYT3	NM_031913	exon8	c.T811C	p.L271L	.	.	67	4	120	1	.	90
EVL	51466	bcgsc.ca	37	14	100551093	100551093	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EVL	NM_016337	exon2	c.A81G	p.P27P	.	.	57	4	137	0	.	154
EXT1	2131	bcgsc.ca	37	8	118830683	118830683	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EXT1	NM_000127	exon7	c.A1623G	p.G541G	.	.	122	5	202	2	.	660
EXTL3	2137	bcgsc.ca	37	8	28600709	28600709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	EXTL3	NM_001440	exon6	c.T2528C	p.I843T	.	.	60	4	137	0	.	92
FAM111B	374393	bcgsc.ca	37	11	58893474	58893474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FAM111B	NM_198947	exon4	c.A1904G	p.N635S	.	.	107	5	336	1	.	92
FAM13C	220965	bcgsc.ca	37	10	61011427	61011427	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FAM13C	NM_198215	exon13	c.T1542C	p.L514L	.	.	127	6	205	2	.	70
FAM186A	121006	bcgsc.ca	37	12	50750000	50750000	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FAM186A	NM_001145475	exon4	c.A615G	p.K205K	.	.	101	5	181	0	.	68
FAM186A	121006	ucsc.edu	37	12	50748595	50748595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FAM186A	NM_001145475	exon4	c.G2020A	p.E674K	.	.	126	22	268	30	.	68
FAM47A	158724	bcgsc.ca	37	X	34148803	34148803	+	Silent	SNP	A	A	G	rs199587283		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FAM47A	NM_203408	exon1	c.T1593C	p.G531G	.	.	62	10	54	3	.	134
FANCA	2175	bcgsc.ca	37	16	89874724	89874724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FANCA	NM_000135	exon6	c.A574G	p.S192G	.	.	191	6	341	1	.	1130
FANCM	57697	bcgsc.ca	37	14	45650910	45650910	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FANCM	NM_020937	exon16	c.4386+2T>A	.	.	.	82	4	170	0	.	569
FBXO11	80204	bcgsc.ca	37	2	48040467	48040467	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FBXO11	NM_001190274	exon18	c.A2133G	p.G711G	.	.	323	53	512	27	.	659
FBXO18	84893	bcgsc.ca	37	10	5950984	5950984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FBXO18	NM_032807	exon5	c.A1003G	p.K335E	.	.	82	4	120	0	.	228
FCGR2A	2212	broad.mit.edu	37	1	161479760	161479760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FCGR2A	NM_001136219	exon4	c.T515C	p.F172S	.	.	549	15	844	10	.	91
FGFR3	2261	bcgsc.ca	37	4	1807340	1807340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FGFR3	NM_001163213	exon12	c.A1595G	p.K532R	.	.	82	4	119	0	.	9542
FHAD1	114827	bcgsc.ca	37	1	15671581	15671581	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FHAD1	NM_052929	exon16	c.T2067C	p.A689A	.	.	63	4	126	1	.	69
FMO3	2328	bcgsc.ca	37	1	171079966	171079966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FMO3	NM_006894	exon6	c.T655C	p.W219R	.	.	294	28	417	19	.	187
FOXP3	50943	broad.mit.edu	37	X	49111949	49111949	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FOXP3	NM_014009	exon8	c.C757T	p.L253L	.	.	221	5	312	1	.	226
FRAS1	80144	bcgsc.ca	37	4	79285086	79285086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FRAS1	NM_001166133	exon22	c.G2600A	p.C867Y	.	.	86	6	140	1	.	68
FRK	2444	ucsc.edu;bcgsc.ca	37	6	116381396	116381396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FRK	NM_002031	exon1	c.A79G	p.T27A	.	.	36	4	71	0	.	948
FUT11	170384	bcgsc.ca	37	10	75533066	75533066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	FUT11	NM_173540	exon2	c.T827C	p.F276S	.	.	70	4	132	1	.	90
GALK2	2585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49531474	49531474	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GALK2	NM_002044	exon5	c.C414T	p.I138I	.	.	209	40	345	1	.	160
GALNT18	374378	bcgsc.ca	37	11	11400769	11400769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_198516	exon4	c.A638G	p.N213S	.	.	118	7	226	1	.	.
GALNT2	2590	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230410235	230410235	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GALNT2	NM_004481	exon15	c.G1485A	p.L495L	.	.	88	8	120	1	.	92
GART	2618	bcgsc.ca	37	21	34893235	34893235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GART	NM_001136005	exon13	c.A1481G	p.D494G	.	.	71	4	129	0	.	91
GAS2L3	283431	bcgsc.ca	37	12	101017858	101017858	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GAS2L3	NM_174942	exon10	c.A1275G	p.A425A	.	.	95	5	193	0	.	227
GBE1	2632	bcgsc.ca	37	3	81698110	81698110	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GBE1	NM_000158	exon5	c.T588C	p.S196S	.	.	65	4	94	1	.	25
GFI1B	8328	bcgsc.ca	37	9	135865154	135865154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GFI1B	NM_004188	exon6	c.G674A	p.C225Y	.	.	47	4	80	0	.	154
GLI3	2737	bcgsc.ca	37	7	42187915	42187915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GLI3	NM_000168	exon3	c.T277C	p.S93P	.	.	293	40	328	26	.	1149
GLMN	11146	bcgsc.ca	37	1	92728472	92728472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GLMN	NM_053274	exon16	c.C1421T	p.S474L	.	.	198	29	333	18	.	227
GNS	2799	bcgsc.ca	37	12	65116807	65116807	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GNS	NM_002076	exon11	c.T1287C	p.P429P	.	.	90	4	143	0	.	514
GPATCH1	55094	bcgsc.ca	37	19	33588731	33588731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GPATCH1	NM_018025	exon8	c.A923G	p.D308G	.	.	136	5	217	1	.	91
GRIA2	2891	bcgsc.ca	37	4	158282799	158282799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GRIA2	NM_000826	exon14	c.A2401G	p.S801G	.	.	212	6	298	3	.	515
GSTCD	79807	broad.mit.edu;bcgsc.ca	37	4	106766665	106766665	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GSTCD	NM_001031720	exon12	c.T1833C	p.V611V	.	.	88	5	158	0	.	92
GTF2E2	2961	bcgsc.ca	37	8	30436480	30436480	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GTF2E2	NM_002095	exon8	c.T834C	p.A278A	.	.	133	5	348	2	.	90
GTPBP2	54676	bcgsc.ca	37	6	43594137	43594137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GTPBP2	NM_019096	exon3	c.T224C	p.V75A	.	.	63	4	68	0	.	92
GYLTL1B	120071	bcgsc.ca	37	11	45945070	45945070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	GYLTL1B	NM_152312	exon3	c.A332G	p.D111G	.	.	62	4	82	1	.	92
HEATR2	54919	bcgsc.ca	37	7	814677	814677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HEATR2	NM_017802	exon11	c.T2117C	p.V706A	.	.	129	8	172	1	.	69
HEATR5A	25938	bcgsc.ca	37	14	31778148	31778148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HEATR5A	NM_015473	exon29	c.T4682C	p.L1561P	.	.	94	4	266	0	.	23
HECTD4	283450	bcgsc.ca	37	12	112608946	112608946	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001109662	exon68	c.C11505T	p.I3835I	.	.	71	4	84	0	.	.
HELLS	3070	bcgsc.ca	37	10	96352039	96352039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HELLS	NM_018063	exon16	c.G1821A	p.M607I	.	.	84	4	203	0	.	92
HERC1	8925	bcgsc.ca	37	15	64067118	64067118	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HERC1	NM_003922	exon2	c.T705C	p.P235P	.	.	120	5	147	0	.	666
HFM1	164045	bcgsc.ca	37	1	91843974	91843974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HFM1	NM_001017975	exon10	c.T1222C	p.F408L	.	.	276	7	416	0	.	112
HHLA1	10086	bcgsc.ca	37	8	133117535	133117535	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	59	4	103	0	.	.
HIST2H3D	653604	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149784882	149784882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HIST2H3D	NM_001123375	exon1	c.A355G	p.T119A	.	.	208	61	276	1	.	22
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75104368	75104368	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HK2	NM_000189	exon8	c.G951A	p.E317E	.	.	105	25	133	0	.	252
HLA-DMB	3109	bcgsc.ca	37	6	32905027	32905027	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HLA-DMB	NM_002118	exon3	c.T544C	p.L182L	.	.	147	5	259	0	.	90
HMGN5	79366	bcgsc.ca	37	X	80370635	80370635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HMGN5	NM_030763	exon7	c.C362G	p.A121G	.	.	682	149	1097	105	.	130
HN1	51155	bcgsc.ca	37	17	73150491	73150491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HN1	NM_016185	exon1	c.T2C	p.M1T	.	.	51	4	36	0	.	90
HPSE	10855	bcgsc.ca	37	4	84230063	84230063	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HPSE	NM_001098540	exon8	c.A1026G	p.G342G	.	.	108	6	158	1	.	227
HSD17B13	345275	bcgsc.ca	37	4	88236734	88236734	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HSD17B13	NM_178135	exon4	c.T468C	p.L156L	.	.	57	4	97	0	.	90
HSP90AA1	3320	bcgsc.ca	37	14	102552100	102552100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HSP90AA1	NM_001017963	exon4	c.A890G	p.D297G	.	.	49	4	110	0	.	949
HSPG2	3339	bcgsc.ca	37	1	22157766	22157766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HSPG2	NM_005529	exon84	c.T11504C	p.L3835P	.	.	45	4	79	1	.	141
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135593729	135593729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HTATSF1	NM_001163280	exon10	c.A1825C	p.K609Q	.	.	127	40	244	0	.	132
HTR7	3363	ucsc.edu;bcgsc.ca	37	10	92508599	92508599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HTR7	NM_019860	exon2	c.T1292C	p.V431A	.	.	42	4	95	0	.	91
HYAL4	23553	bcgsc.ca	37	7	123508982	123508982	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HYAL4	NM_012269	exon3	c.T655C	p.L219L	.	.	71	4	91	0	.	91
HYOU1	10525	bcgsc.ca	37	11	118922529	118922529	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	HYOU1	NM_001130991	exon13	c.1338+2T>C	.	.	.	86	5	182	0	.	90
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394T	p.R132C	.	.	189	89	298	0	.	23522
IFNGR1	3459	bcgsc.ca	37	6	137519595	137519595	+	Missense_Mutation	SNP	T	T	C	rs139083589	alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IFNGR1	NM_000416	exon7	c.A1043G	p.E348G	.	.	80	4	254	0	T|1.000;G|0.000	91
IFNGR2	3460	bcgsc.ca	37	21	34799265	34799265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IFNGR2	NM_005534	exon4	c.T487C	p.F163L	.	.	227	9	338	2	.	186
IFT80	57560	bcgsc.ca	37	3	160018768	160018768	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IFT80	NM_020800	exon12	c.T1218C	p.S406S	.	.	339	9	620	2	.	522
IGF2R	3482	ucsc.edu;bcgsc.ca	37	6	160461609	160461609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IGF2R	NM_000876	exon11	c.A1333G	p.T445A	.	.	37	4	109	0	.	118
IGFLR1	79713	bcgsc.ca	37	19	36230652	36230652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IGFLR1	NM_024660	exon4	c.A680G	p.D227G	.	.	59	4	69	0	.	90
IL1RAP	3556	bcgsc.ca	37	3	190362070	190362070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IL1RAP	NM_001167929	exon9	c.G1085T	p.C362F	.	.	380	68	608	35	.	91
ILK	3611	bcgsc.ca	37	11	6630817	6630817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ILK	NM_001014794	exon9	c.T803C	p.I268T	.	.	165	6	316	0	.	1363
IMPG2	50939	bcgsc.ca	37	3	100988368	100988368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IMPG2	NM_016247	exon8	c.T878C	p.L293P	.	.	159	5	445	1	.	93
INSIG1	3638	bcgsc.ca	37	7	155090246	155090246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	INSIG1	NM_198337	exon2	c.T251C	p.L84P	.	.	69	4	71	0	.	90
INTS3	65123	bcgsc.ca	37	1	153713811	153713811	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	INTS3	NM_023015	exon3	c.T285C	p.T95T	.	.	138	6	178	0	.	93
IPO11	51194	bcgsc.ca	37	5	61738853	61738853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IPO11	NM_001134779	exon3	c.T302C	p.L101P	.	.	78	4	154	1	.	227
IQGAP1	8826	bcgsc.ca	37	15	91035904	91035904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IQGAP1	NM_003870	exon35	c.A4589G	p.Y1530C	.	.	76	4	103	0	.	950
IRAK4	51135	bcgsc.ca	37	12	44166748	44166748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	IRAK4	NM_016123	exon5	c.A524G	p.N175S	.	.	98	5	190	0	.	1366
ITCH	83737	bcgsc.ca	37	20	33045267	33045267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ITCH	NM_001257137	exon14	c.C1406T	p.P469L	.	.	80	4	123	0	.	659
ITIH2	3698	bcgsc.ca	37	10	7769762	7769762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ITIH2	NM_002216	exon11	c.T1250C	p.I417T	.	.	159	6	188	1	.	93
ITSN2	50618	bcgsc.ca	37	2	24432794	24432794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ITSN2	NM_006277	exon35	c.A4366G	p.N1456D	.	.	155	6	225	0	.	539
KANK3	256949	bcgsc.ca	37	19	8387729	8387729	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KANK3	NM_198471	exon11	c.T2460C	p.V820V	.	.	65	4	108	0	.	90
KCNH1	3756	bcgsc.ca	37	1	211192164	211192164	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KCNH1	NM_172362	exon6	c.T993C	p.A331A	.	.	138	6	211	0	.	94
KDM4A	9682	bcgsc.ca	37	1	44118933	44118933	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KDM4A	NM_014663	exon2	c.A87G	p.R29R	.	.	68	4	170	0	.	227
KDM4C	23081	bcgsc.ca	37	9	6849546	6849546	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KDM4C	NM_001146696	exon5	c.T541C	p.L181L	.	.	187	6	350	0	.	228
KDM4C	23081	bcgsc.ca	37	9	6986530	6986530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KDM4C	NM_001146696	exon11	c.G1607T	p.C536F	.	.	160	5	248	1	.	228
KDM4D	55693	bcgsc.ca	37	11	94730935	94730935	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KDM4D	NM_018039	exon3	c.A399G	p.S133S	.	.	52	4	105	0	.	226
KDM5A	5927	bcgsc.ca	37	12	493244	493244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KDM5A	NM_001042603	exon3	c.A319G	p.I107V	.	.	123	5	193	0	.	227
KIAA0319L	79932	bcgsc.ca	37	1	35917329	35917329	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIAA0319L	NM_024874	exon13	c.T1962C	p.T654T	.	.	59	4	130	0	.	92
KIAA0430	9665	bcgsc.ca	37	16	15727702	15727702	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIAA0430	NM_001184998	exon6	c.1007-2A>G	.	.	.	76	4	160	0	.	90
KIAA1109	84162	bcgsc.ca	37	4	123280735	123280735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIAA1109	NM_015312	exon83	c.T14659C	p.S4887P	.	.	89	5	107	0	.	80
KIAA1257	57501	bcgsc.ca	37	3	128711933	128711933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_020741	exon2	c.T215C	p.V72A	.	.	77	4	117	0	.	.
KIAA1279	26128	bcgsc.ca	37	10	70775640	70775640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIAA1279	NM_015634	exon7	c.A1334G	p.K445R	.	.	89	4	144	2	.	91
KIAA1429	25962	bcgsc.ca	37	8	95508006	95508006	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIAA1429	NM_015496	exon19	c.A4497G	p.E1499E	.	.	68	4	108	0	.	92
KIAA1731	85459	bcgsc.ca	37	11	93429507	93429507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIAA1731	NM_033395	exon14	c.T1693C	p.C565R	.	.	69	4	172	0	.	22
KIF13B	23303	ucsc.edu;bcgsc.ca	37	8	29003925	29003925	+	Silent	SNP	A	A	G	rs188349891	by1000genomes;alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIF13B	NM_015254	exon18	c.T2157C	p.I719I	.	.	127	18	359	29	A|0.999;C|0.000	22
KIF1B	23095	bcgsc.ca	37	1	10384827	10384827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIF1B	NM_015074	exon24	c.A2411G	p.D804G	.	.	93	23	211	10	.	93
KIF23	9493	bcgsc.ca	37	15	69709720	69709720	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIF23	NM_004856	exon3	c.82-2A>G	.	.	.	72	4	125	0	.	227
KIF2C	11004	bcgsc.ca	37	1	45220484	45220484	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KIF2C	NM_006845	exon8	c.T726C	p.T242T	.	.	76	4	135	0	.	228
KRT1	3848	broad.mit.edu	37	12	53073893	53073893	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KRT1	NM_006121	exon1	c.G240A	p.V80V	.	.	390	5	580	0	.	92
KTN1	3895	bcgsc.ca	37	14	56085933	56085933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	KTN1	NM_004986	exon5	c.T866C	p.L289P	.	.	87	5	217	2	.	1147
LEPREL1	55214	bcgsc.ca	37	3	189705343	189705343	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	LEPREL1	NM_018192	exon5	c.T1071C	p.I357I	.	.	226	7	372	0	.	155
LETM2	137994	bcgsc.ca	37	8	38257811	38257811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	LETM2	NM_001199659	exon5	c.A526G	p.M176V	.	.	23	3	72	0	.	90
LINC00862	554279	bcgsc.ca	37	1	200342256	200342256	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	71	4	123	0	.	.
LINGO1	84894	bcgsc.ca	37	15	77907932	77907932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	LINGO1	NM_032808	exon2	c.T317C	p.I106T	.	.	118	5	152	2	.	24
LOC100129924	0	bcgsc.ca	37	1	43263870	43263870	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001242750	exon7	c.G712C	p.A238P	.	.	154	25	298	34	.	.
LOC646471	0	bcgsc.ca	37	1	26149565	26149565	+	RNA	SNP	C	C	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	36	11	78	7	.	.
LPCAT4	254531	bcgsc.ca	37	15	34656411	34656411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	LPCAT4	NM_153613	exon4	c.G575A	p.G192E	.	.	44	4	48	1	.	90
LRP12	29967	bcgsc.ca	37	8	105510033	105510033	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	LRP12	NM_013437	exon5	c.A747G	p.G249G	.	.	76	4	187	1	.	90
LSMEM1	0	bcgsc.ca	37	7	112129941	112129941	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_182597	exon4	c.A333G	p.R111R	.	.	117	5	165	0	.	.
MAGEA8	4107	bcgsc.ca	37	X	149013399	149013399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MAGEA8	NM_005364	exon3	c.A353G	p.E118G	.	.	186	31	242	9	.	130
MAP2K1	5604	ucsc.edu;bcgsc.ca	37	15	66777396	66777396	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MAP2K1	NM_002755	exon7	c.A762C	p.V254V	.	.	73	7	129	0	.	978
MAP3K1	4214	bcgsc.ca	37	5	56178615	56178615	+	Silent	SNP	A	A	G	rs55912465	byfrequency;alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MAP3K1	NM_005921	exon14	c.A3588G	p.S1196S	.	.	83	4	105	0	A|0.993;C|0.007	956
MAP3K15	389840	bcgsc.ca	37	X	19416398	19416398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MAP3K15	NM_001001671	exon15	c.A2012G	p.D671G	.	.	176	8	256	1	.	335
MARCH6	10299	bcgsc.ca	37	5	10410273	10410273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MARCH6	NM_005885	exon18	c.T1576C	p.S526P	.	.	153	8	189	3	.	501
MATN1	4146	bcgsc.ca	37	1	31188943	31188943	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MATN1	NM_002379	exon5	c.G1020T	p.A340A	.	.	82	4	130	0	.	90
MBD1	4152	bcgsc.ca	37	18	47800095	47800095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MBD1	NM_001204137	exon13	c.A1360G	p.T454A	.	.	133	5	159	1	.	228
MEGF11	84465	bcgsc.ca	37	15	66262957	66262957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MEGF11	NM_032445	exon8	c.A833G	p.H278R	.	.	70	4	81	1	.	69
MFSD11	79157	bcgsc.ca	37	17	74763501	74763501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MFSD11	NM_001242532	exon9	c.T716C	p.M239T	.	.	84	4	101	0	.	91
MGAM	8972	bcgsc.ca	37	7	141734080	141734080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MGAM	NM_004668	exon15	c.T1688C	p.L563P	.	.	230	6	272	0	.	70
MIR662	724032	bcgsc.ca	37	16	819567	819567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	51	4	68	1	.	.
MLL2	8085	bcgsc.ca	37	12	49448806	49448806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MLL2	NM_003482	exon2	c.A53G	p.D18G	.	.	73	4	100	0	.	612
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118373507	118373507	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MLL	NM_001197104	exon27	c.G6900A	p.V2300V	.	.	51	13	103	0	.	1255
MMP10	4319	bcgsc.ca	37	11	102641533	102641533	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MMP10	NM_002425	exon10	c.A1422G	p.L474L	.	.	80	4	160	0	.	713
MMRN2	79812	bcgsc.ca	37	10	88717135	88717135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MMRN2	NM_024756	exon1	c.G164A	p.R55H	.	.	46	4	91	0	.	153
MORC1	27136	bcgsc.ca	37	3	108703564	108703564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MORC1	NM_014429	exon23	c.A2323G	p.S775G	.	.	93	4	213	0	.	98
MPP5	64398	bcgsc.ca	37	14	67779259	67779259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MPP5	NM_022474	exon9	c.C1057A	p.H353N	.	.	149	5	354	0	.	91
MPP5	64398	broad.mit.edu	37	14	67768776	67768776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MPP5	NM_022474	exon6	c.C742T	p.Q248X	.	.	131	6	271	0	.	91
MPRIP	23164	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17075144	17075144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MPRIP	NM_015134	exon16	c.G2276A	p.R759H	.	.	93	11	114	0	.	90
MTMR4	9110	bcgsc.ca	37	17	56588833	56588833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MTMR4	NM_004687	exon5	c.A250G	p.M84V	.	.	63	4	103	0	.	91
MUC4	4585	bcgsc.ca	37	3	195512712	195512712	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MUC4	NM_018406	exon2	c.A5739G	p.V1913V	.	.	168	23	336	5	.	90
MYBBP1A	10514	bcgsc.ca	37	17	4455516	4455516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYBBP1A	NM_014520	exon7	c.A809G	p.D270G	.	.	94	8	101	1	.	92
MYBPC1	4604	bcgsc.ca	37	12	102056171	102056171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYBPC1	NM_206819	exon21	c.A2068G	p.R690G	.	.	71	4	148	0	.	94
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	10432777	10432777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYH2	NM_017534	exon25	c.G3139T	p.E1047X	.	.	136	15	246	0	.	194
MYH3	4621	bcgsc.ca	37	17	10544624	10544624	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYH3	NM_002470	exon18	c.T2025C	p.I675I	.	.	69	4	120	1	.	95
MYO10	4651	bcgsc.ca	37	5	16689934	16689934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYO10	NM_012334	exon28	c.A3895G	p.S1299G	.	.	205	7	307	0	.	3
MYO1B	4430	bcgsc.ca	37	2	192272873	192272873	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYO1B	NM_001161819	exon25	c.C2589T	p.A863A	.	.	65	4	132	0	.	238
MYSM1	114803	bcgsc.ca	37	1	59154733	59154733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	MYSM1	NM_001085487	exon6	c.A376G	p.K126E	.	.	118	5	279	0	.	501
NCDN	23154	bcgsc.ca	37	1	36025989	36025989	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NCDN	NM_001014839	exon4	c.T237C	p.A79A	.	.	65	4	120	0	.	155
NCKAP1L	3071	bcgsc.ca	37	12	54914518	54914518	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NCKAP1L	NM_005337	exon17	c.T1666C	p.L556L	.	.	364	8	671	1	.	93
NCOR1	9611	bcgsc.ca	37	17	16052786	16052786	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NCOR1	NM_001190440	exon8	c.A888G	p.R296R	.	.	50	4	93	0	.	229
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3918	3918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	ENST00000361390	exon1	c.G612C	p.E204D	.	.	146	40	466	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12400	12400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	ENST00000361567	exon1	c.A64G	p.T22A	.	.	162	13	562	3	.	.
NEBL	10529	broad.mit.edu	37	10	21462718	21462718	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NEBL	NM_001173484	exon1	c.C45T	p.T15T	.	.	52	5	26	0	.	92
NEDD9	4739	broad.mit.edu	37	6	11190968	11190968	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NEDD9	NM_001142393	exon6	c.T1134C	p.S378S	.	.	42	4	79	1	.	226
NEK1	4750	bcgsc.ca	37	4	170398434	170398434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NEK1	NM_001199397	exon26	c.A2275G	p.N759D	.	.	200	6	448	0	.	361
NEK4	6787	bcgsc.ca	37	3	52794954	52794954	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NEK4	NM_003157	exon7	c.822-2A>G	.	.	.	79	5	180	0	.	358
NFAT5	10725	bcgsc.ca	37	16	69718836	69718836	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NFAT5	NM_138713	exon11	c.T1737C	p.S579S	.	.	151	5	290	0	.	90
NFX1	4799	bcgsc.ca	37	9	33369963	33369963	+	Missense_Mutation	SNP	A	A	G	rs200253384	alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NFX1	NM_002504	exon24	c.A3350G	p.D1117G	.	.	67	4	153	0	.	91
NLRC5	84166	bcgsc.ca	37	16	57074624	57074624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NLRC5	NM_032206	exon16	c.G2933T	p.R978M	.	.	71	4	127	1	.	159
NLRP4	147945	bcgsc.ca	37	19	56390213	56390213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NLRP4	NM_134444	exon9	c.T2750C	p.L917P	.	.	230	7	289	0	.	216
NOD1	10392	bcgsc.ca	37	7	30477232	30477232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NOD1	NM_006092	exon10	c.T2494C	p.F832L	.	.	116	5	131	0	.	229
NOL4	8715	bcgsc.ca	37	18	31463214	31463214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NOL4	NM_003787	exon10	c.A1717G	p.S573G	.	.	91	4	165	0	.	93
NR2C1	7181	bcgsc.ca	37	12	95445536	95445536	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NR2C1	NM_003297	exon9	c.965+2T>C	.	.	.	81	4	166	1	.	187
NRDE2	55051	bcgsc.ca	37	14	90756744	90756744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_017970	exon10	c.T2050C	p.F684L	.	.	73	4	146	0	.	.
NUP153	9972	bcgsc.ca	37	6	17688831	17688831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NUP153	NM_005124	exon2	c.A130G	p.T44A	.	.	102	5	174	0	.	637
NUP54	53371	bcgsc.ca	37	4	77052436	77052436	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NUP54	NM_017426	exon7	c.T909G	p.G303G	.	.	184	38	374	24	.	205
NUP88	4927	bcgsc.ca	37	17	5308525	5308525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	NUP88	NM_002532	exon6	c.T896C	p.M299T	.	.	98	5	149	1	.	204
OGT	8473	bcgsc.ca	37	X	70782711	70782711	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OGT	NM_181672	exon16	c.A1992G	p.G664G	.	.	140	35	257	21	.	113
OIT3	170392	broad.mit.edu	37	10	74692160	74692160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OIT3	NM_152635	exon9	c.C1516T	p.R506C	.	.	186	7	458	0	.	70
OPA1	4976	bcgsc.ca	37	3	193335621	193335621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OPA1	NM_130837	exon5	c.T605C	p.L202S	.	.	153	5	275	1	.	68
OPTC	26254	bcgsc.ca	37	1	203465338	203465338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OPTC	NM_014359	exon2	c.A205G	p.T69A	.	.	75	4	96	0	.	492
OR2J3	442186	bcgsc.ca	37	6	29079992	29079992	+	Missense_Mutation	SNP	G	G	A	rs201612570	byfrequency	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OR2J3	NM_001005216	exon1	c.G325A	p.A109T	.	.	409	21	637	9	G|0.988;A|0.013	90
OR2T12	127064	broad.mit.edu	37	1	248458642	248458642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OR2T12	NM_001004692	exon1	c.C239T	p.A80V	.	.	317	13	406	0	.	71
OR52E8	390079	broad.mit.edu	37	11	5878588	5878588	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OR52E8	NM_001005168	exon1	c.T345C	p.A115A	.	.	90	6	202	1	.	70
OR5A1	219982	bcgsc.ca	37	11	59210870	59210870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OR5A1	NM_001004728	exon1	c.T229C	p.S77P	.	.	72	4	166	1	.	69
ORC1	4998	bcgsc.ca	37	1	52854275	52854275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ORC1	NM_004153	exon8	c.A1222G	p.K408E	.	.	145	5	338	1	.	206
OSBPL7	114881	bcgsc.ca	37	17	45895921	45895921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OSBPL7	NM_145798	exon6	c.A431G	p.H144R	.	.	66	7	76	2	.	68
OTUD4	54726	bcgsc.ca	37	4	146059072	146059072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	OTUD4	NM_001102653	exon21	c.C2660T	p.S887F	.	.	161	28	304	22	.	565
PAEP	5047	bcgsc.ca	37	9	138454695	138454695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PAEP	NM_002571	exon3	c.T266C	p.V89A	.	.	95	4	138	0	.	68
PARP1	142	bcgsc.ca	37	1	226549686	226549686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PARP1	NM_001618	exon22	c.T2947C	p.S983P	.	.	74	4	117	0	.	727
PARP15	165631	bcgsc.ca	37	3	122324817	122324817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PARP15	NM_001113523	exon2	c.T221C	p.L74P	.	.	76	4	163	0	.	524
PCNXL3	399909	bcgsc.ca	37	11	65402545	65402545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PCNXL3	NM_032223	exon30	c.A4907G	p.H1636R	.	.	85	4	132	3	.	46
PCNXL4	64430	bcgsc.ca	37	14	60592520	60592520	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_022495	exon9	c.T2544C	p.S848S	.	.	83	4	169	0	.	.
PDCD11	22984	bcgsc.ca	37	10	105158270	105158270	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PDCD11	NM_014976	exon2	c.A87G	p.Q29Q	.	.	111	5	208	2	.	275
PDE4B	5142	bcgsc.ca	37	1	66834619	66834619	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PDE4B	NM_001037341	exon16	c.T1812C	p.C604C	.	.	77	4	137	0	.	92
PDIK1L	149420	bcgsc.ca	37	1	26448611	26448611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PDIK1L	NM_152835	exon3	c.A569G	p.D190G	.	.	60	14	142	7	.	333
PDK4	5166	bcgsc.ca	37	7	95224401	95224401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PDK4	NM_002612	exon2	c.T206C	p.L69P	.	.	141	5	241	0	.	358
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18919622	18919622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PHKA2	NM_000292	exon27	c.T3008A	p.L1003Q	.	.	209	101	315	0	.	131
PIGR	5284	bcgsc.ca	37	1	207105885	207105885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PIGR	NM_002644	exon8	c.T1924C	p.S642P	.	.	66	4	60	0	.	92
PIM1	5292	bcgsc.ca	37	6	37138761	37138761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PIM1	NM_001243186	exon3	c.C467T	p.A156V	.	.	54	4	81	0	.	1493
PKD1L1	168507	bcgsc.ca	37	7	47847933	47847933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PKD1L1	NM_138295	exon52	c.T7739C	p.V2580A	.	.	158	5	192	0	.	145
PKNOX1	5316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44450022	44450022	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PKNOX1	NM_004571	exon11	c.G1122A	p.T374T	.	.	97	40	152	0	.	153
PKP2	5318	bcgsc.ca	37	12	32945420	32945420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PKP2	NM_004572	exon14	c.T2584C	p.F862L	.	.	126	5	281	0	.	92
PLB1	151056	bcgsc.ca	37	2	28796094	28796094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PLB1	NM_001170585	exon21	c.A1388G	p.K463R	.	.	80	4	130	1	.	141
PLCB4	5332	bcgsc.ca	37	20	9376173	9376173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PLCB4	NM_182797	exon17	c.A1418G	p.Q473R	.	.	72	4	129	0	.	274
PLXNC1	10154	bcgsc.ca	37	12	94676092	94676092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PLXNC1	NM_005761	exon23	c.G3794T	p.R1265L	.	.	57	4	107	0	.	92
PML	5371	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74290431	74290431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PML	NM_033250	exon2	c.T216G	p.C72W	.	.	85	16	82	1	.	1083
PPAN	56342	bcgsc.ca	37	19	10218526	10218526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PPAN	NM_020230	exon4	c.A338G	p.K113R	.	.	55	4	83	0	.	90
PPAPDC2	403313	bcgsc.ca	37	9	4663226	4663226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PPAPDC2	NM_203453	exon1	c.A851G	p.N284S	.	.	164	6	270	2	.	90
PPIL3	53938	bcgsc.ca	37	2	201750429	201750429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PPIL3	NM_130906	exon3	c.A70G	p.T24A	.	.	152	5	269	0	.	90
PPP1R21	129285	bcgsc.ca	37	2	48737222	48737222	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001135629	exon20	c.A2154G	p.K718K	.	.	217	7	308	2	.	.
PRB4	5545	bcgsc.ca	37	12	11461675	11461675	+	Missense_Mutation	SNP	C	C	G	rs75743553	byfrequency	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRB4	NM_001261399	exon3	c.G242C	p.R81P	.	.	195	12	317	14	C|0.999;G|0.001;T|0.000	91
PRDM16	63976	ucsc.edu;bcgsc.ca	37	1	3328268	3328268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRDM16	NM_022114	exon9	c.G1507T	p.A503S	.	.	32	4	49	0	.	660
PRICKLE1	144165	bcgsc.ca	37	12	42863363	42863363	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRICKLE1	NM_001144882	exon4	c.A273G	p.E91E	.	.	120	5	215	0	.	518
PRPF3	9129	bcgsc.ca	37	1	150307433	150307433	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRPF3	NM_004698	exon7	c.A756G	p.K252K	.	.	96	4	115	0	.	91
PRPF40A	55660	bcgsc.ca	37	2	153525688	153525688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRPF40A	NM_017892	exon16	c.A1727G	p.E576G	.	.	105	5	211	0	.	68
PRR21	643905	mdanderson.org	37	2	240982247	240982247	+	Silent	SNP	A	A	G	rs75044548	byfrequency	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PRR21	NM_001080835	exon1	c.T153C	p.H51H	.	.	68	16	90	9	A|0.813;G|0.187	70
PSD4	23550	bcgsc.ca	37	2	113950089	113950089	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PSD4	NM_012455	exon6	c.A1761G	p.V587V	.	.	94	5	131	0	.	229
PSTPIP2	9050	bcgsc.ca	37	18	43571911	43571911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PSTPIP2	NM_024430	exon12	c.A877G	p.N293D	.	.	110	6	190	0	.	227
PTCHD1	139411	bcgsc.ca	37	X	23411283	23411283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PTCHD1	NM_173495	exon3	c.A1648G	p.S550G	.	.	81	4	110	0	.	135
PTGS2	5743	bcgsc.ca	37	1	186645845	186645845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PTGS2	NM_000963	exon7	c.A724G	p.I242V	.	.	67	4	138	0	.	227
PTPN5	84867	bcgsc.ca	37	11	18763857	18763857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PTPN5	NM_032781	exon7	c.A677G	p.E226G	.	.	43	4	86	0	.	229
PTPRC	5788	bcgsc.ca	37	1	198677296	198677296	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PTPRC	NM_002838	exon10	c.A939G	p.Q313Q	.	.	140	5	245	1	.	295
PWP1	11137	bcgsc.ca	37	12	108104238	108104238	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PWP1	NM_007062	exon14	c.A1347G	p.G449G	.	.	240	7	407	0	.	90
PYGO2	90780	bcgsc.ca	37	1	154931948	154931948	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	PYGO2	NM_138300	exon3	c.T528C	p.S176S	.	.	86	4	93	0	.	227
RAB24	53917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176728924	176728924	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RAB24	NM_001031677	exon8	c.547+2T>C	.	.	.	79	10	110	0	.	159
RAB3GAP1	22930	bcgsc.ca	37	2	135870795	135870795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RAB3GAP1	NM_001172435	exon6	c.A437G	p.N146S	.	.	216	6	344	1	.	92
RABEP1	9135	bcgsc.ca	37	17	5280517	5280517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RABEP1	NM_004703	exon14	c.A2132G	p.E711G	.	.	64	4	69	0	.	659
RAF1	5894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12645687	12645687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RAF1	NM_002880	exon7	c.C782G	p.P261R	.	.	126	57	173	0	.	1404
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380447	109380447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RANBP2	NM_006267	exon20	c.A3452G	p.N1151S	.	.	131	71	165	0	.	675
RAPGEF5	9771	bcgsc.ca	37	7	22175742	22175742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RAPGEF5	NM_012294	exon23	c.A1871G	p.D624G	.	.	211	37	311	15	.	206
RBM11	54033	bcgsc.ca	37	21	15591991	15591991	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_144770	exon2	c.T204C	p.A68A	.	.	154	5	274	0	.	.
RBM20	282996	ucsc.edu;bcgsc.ca	37	10	112559555	112559555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001134363	exon7	c.A1679G	p.E560G	.	.	39	4	101	0	.	.
RBM6	10180	bcgsc.ca	37	3	50005295	50005295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RBM6	NM_005777	exon3	c.G437A	p.R146K	.	.	73	4	179	0	.	280
RC3H2	54542	bcgsc.ca	37	9	125617675	125617675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RC3H2	NM_018835	exon15	c.A2603G	p.D868G	.	.	98	5	214	0	.	523
RDH16	8608	bcgsc.ca	37	12	57351206	57351206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RDH16	NM_003708	exon1	c.T41C	p.L14P	.	.	63	4	114	0	.	90
RFC1	5981	bcgsc.ca	37	4	39325025	39325025	+	Missense_Mutation	SNP	A	A	C	rs200429404		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RFC1	NM_002913	exon7	c.T655G	p.L219V	.	.	211	32	381	12	.	230
RGS4	5999	bcgsc.ca	37	1	163039275	163039275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RGS4	NM_001102445	exon2	c.A292G	p.M98V	.	.	100	4	132	1	.	652
RIMS4	140730	bcgsc.ca	37	20	43438828	43438828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RIMS4	NM_182970	exon1	c.G85A	p.D29N	.	.	49	4	47	0	.	94
RIOK1	83732	bcgsc.ca	37	6	7393378	7393378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RIOK1	NM_031480	exon2	c.T118C	p.F40L	.	.	66	4	143	0	.	336
RNF168	165918	bcgsc.ca	37	3	196202153	196202153	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RNF168	NM_152617	exon5	c.A711G	p.S237S	.	.	56	4	99	0	.	90
RNF175	285533	bcgsc.ca	37	4	154636747	154636747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RNF175	NM_173662	exon7	c.A698G	p.K233R	.	.	85	4	145	0	.	47
RNF213	57674	bcgsc.ca	37	17	78286928	78286928	+	Silent	SNP	A	A	G	rs139305565	byfrequency	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RNF213	NM_001256071	exon15	c.A2772G	p.T924T	.	.	80	4	122	0	A|1.000;G|0.000	577
RNF216	54476	bcgsc.ca	37	7	5769118	5769118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RNF216	NM_207111	exon7	c.A1334G	p.Q445R	.	.	259	7	301	0	.	274
RNF8	9025	bcgsc.ca	37	6	37336309	37336309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RNF8	NM_003958	exon3	c.T290C	p.V97A	.	.	151	6	165	0	.	227
RNPEP	6051	bcgsc.ca	37	1	201958599	201958599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RNPEP	NM_020216	exon3	c.T677C	p.I226T	.	.	208	7	250	1	.	91
ROCK2	9475	bcgsc.ca	37	2	11337425	11337425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ROCK2	NM_004850	exon27	c.A3329G	p.D1110G	.	.	357	9	501	1	.	546
RP1	6101	bcgsc.ca	37	8	55539102	55539102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RP1	NM_006269	exon4	c.A2660G	p.H887R	.	.	57	4	106	1	.	102
RPAP2	79871	bcgsc.ca	37	1	92789341	92789341	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RPAP2	NM_024813	exon8	c.T864C	p.C288C	.	.	106	6	174	0	.	91
RPS4X	6191	bcgsc.ca	37	X	71493160	71493160	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RPS4X	NM_001007	exon6	c.T612C	p.S204S	.	.	218	6	309	0	.	130
RPS6KB1	6198	bcgsc.ca	37	17	57991997	57991997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RPS6KB1	NM_001272043	exon4	c.T314C	p.V105A	.	.	151	6	213	0	.	1041
RSRC2	65117	broad.mit.edu;bcgsc.ca	37	12	122991425	122991425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RSRC2	NM_023012	exon9	c.A1081G	p.N361D	.	.	120	7	230	0	.	91
RXFP1	59350	bcgsc.ca	37	4	159514572	159514572	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RXFP1	NM_021634	exon3	c.T207C	p.S69S	.	.	165	5	300	1	.	91
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39010081	39010081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	RYR1	NM_001042723	exon67	c.G10246A	p.V3416M	.	.	46	17	62	0	.	100
SAMD4A	23034	bcgsc.ca	37	14	55168789	55168789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SAMD4A	NM_015589	exon2	c.A206G	p.N69S	.	.	69	4	126	1	.	90
SART3	9733	broad.mit.edu	37	12	108926103	108926103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SART3	NM_014706	exon13	c.G1564A	p.G522S	.	.	28	4	43	0	.	91
SCAF8	22828	bcgsc.ca	37	6	155148369	155148369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SCAF8	NM_014892	exon18	c.C2135T	p.P712L	.	.	92	4	273	0	.	91
SCG3	29106	bcgsc.ca	37	15	51975591	51975591	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SCG3	NM_013243	exon4	c.T357C	p.D119D	.	.	88	4	148	0	.	91
SEC24B	10427	broad.mit.edu	37	4	110394227	110394227	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SEC24B	NM_006323	exon3	c.C945T	p.S315S	.	.	215	5	418	0	.	137
SENP1	29843	bcgsc.ca	37	12	48465482	48465482	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SENP1	NM_001267594	exon9	c.G963A	p.L321L	.	.	156	5	337	2	.	660
SESTD1	91404	bcgsc.ca	37	2	179997138	179997138	+	Missense_Mutation	SNP	C	C	T	rs201429416		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SESTD1	NM_178123	exon10	c.G865A	p.E289K	.	.	136	28	176	6	.	228
SGMS1	259230	ucsc.edu;bcgsc.ca	37	10	52103374	52103374	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SGMS1	NM_147156	exon7	c.T501C	p.P167P	.	.	48	4	118	0	.	227
SHQ1	55164	bcgsc.ca	37	3	72890313	72890313	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SHQ1	NM_018130	exon4	c.A369G	p.E123E	.	.	78	4	220	2	.	137
SLC16A4	9122	bcgsc.ca	37	1	110923610	110923610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC16A4	NM_004696	exon5	c.T520C	p.W174R	.	.	92	4	152	0	.	93
SLC24A1	9187	bcgsc.ca	37	15	65942722	65942722	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_004727	exon7	c.A2235G	p.E745E	.	.	62	4	98	0	.	.
SLC25A37	51312	bcgsc.ca	37	8	23429359	23429359	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC25A37	NM_016612	exon4	c.T1008C	p.A336A	.	.	74	4	178	0	.	90
SLC25A4	291	bcgsc.ca	37	4	186066123	186066123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC25A4	NM_001151	exon2	c.A317G	p.H106R	.	.	81	4	169	0	.	91
SLC29A4	222962	bcgsc.ca	37	7	5340191	5340191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC29A4	NM_153247	exon10	c.T1348C	p.C450R	.	.	226	8	222	2	.	515
SLC35A3	23443	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100483326	100483326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC35A3	NM_001271685	exon7	c.C968T	p.S323L	.	.	495	74	913	2	.	90
SLC38A1	81539	bcgsc.ca	37	12	46602891	46602891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC38A1	NM_030674	exon6	c.A334G	p.T112A	.	.	132	6	276	1	.	518
SLC5A2	6524	bcgsc.ca	37	16	31497540	31497540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SLC5A2	NM_003041	exon5	c.A518G	p.N173S	.	.	80	4	116	0	.	91
SMC5	23137	bcgsc.ca	37	9	72933807	72933807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SMC5	NM_015110	exon15	c.A2078G	p.K693R	.	.	236	6	431	0	.	229
SNUPN	10073	bcgsc.ca	37	15	75899652	75899652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SNUPN	NM_001042581	exon6	c.T505C	p.Y169H	.	.	57	4	127	0	.	91
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130785772	130785772	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SNX19	NM_014758	exon1	c.T63C	p.N21N	.	.	53	11	108	0	.	229
SPATA19	219938	bcgsc.ca	37	11	133715289	133715289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SPATA19	NM_174927	exon1	c.T53C	p.L18P	.	.	55	5	128	2	.	90
SPATA31D1	389763	bcgsc.ca	37	9	84605368	84605368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001001670	exon3	c.A269G	p.E90G	.	.	192	6	432	1	.	.
SPOCK2	9806	bcgsc.ca	37	10	73822906	73822906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SPOCK2	NM_014767	exon11	c.A1006G	p.S336G	.	.	50	4	75	1	.	90
SPRTN	83932	bcgsc.ca	37	1	231487164	231487164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_032018	exon4	c.A565G	p.R189G	.	.	102	4	139	0	.	.
SPTLC2	9517	bcgsc.ca	37	14	78036845	78036845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SPTLC2	NM_004863	exon5	c.T638C	p.L213P	.	.	120	5	229	0	.	92
SPZ1	84654	bcgsc.ca	37	5	79616135	79616135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SPZ1	NM_032567	exon1	c.T101C	p.I34T	.	.	144	6	237	0	.	91
SRRM2	23524	bcgsc.ca	37	16	2813664	2813664	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SRRM2	NM_016333	exon11	c.A3135G	p.P1045P	.	.	83	4	111	1	.	93
SRSF12	135295	ucsc.edu;bcgsc.ca	37	6	89816912	89816912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SRSF12	NM_080743	exon2	c.A131G	p.D44G	.	.	42	4	130	0	.	90
SRSF6	6431	bcgsc.ca	37	20	42089385	42089385	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SRSF6	NM_006275	exon6	c.A717G	p.K239K	.	.	93	4	113	0	.	289
ST13	6767	bcgsc.ca	37	22	41225677	41225677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ST13	NM_003932	exon10	c.A800G	p.E267G	.	.	29	4	105	0	.	226
ST8SIA1	6489	bcgsc.ca	37	12	22354571	22354571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ST8SIA1	NM_003034	exon5	c.T986C	p.L329P	.	.	99	4	183	1	.	93
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87912274	87912274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	STEAP4	NM_001205315	exon4	c.C666G	p.D222E	.	.	103	43	189	0	.	90
STK38	11329	bcgsc.ca	37	6	36492190	36492190	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	STK38	NM_007271	exon4	c.T234C	p.R78R	.	.	57	4	128	0	.	982
STXBP3	6814	bcgsc.ca	37	1	109318990	109318990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	STXBP3	NM_007269	exon8	c.T629C	p.L210P	.	.	59	4	101	0	.	93
STXBP5L	9515	bcgsc.ca	37	3	121100375	121100375	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	STXBP5L	NM_014980	exon23	c.A2655G	p.P885P	.	.	154	5	363	0	.	77
SVOPL	136306	bcgsc.ca	37	7	138363237	138363237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SVOPL	NM_001139456	exon2	c.A116G	p.E39G	.	.	57	4	81	0	.	68
SYCP1	6847	bcgsc.ca	37	1	115398141	115398141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SYCP1	NM_003176	exon2	c.A56G	p.Q19R	.	.	186	6	230	0	.	91
SYT17	51760	bcgsc.ca	37	16	19195447	19195447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	SYT17	NM_016524	exon5	c.A929G	p.K310R	.	.	43	4	97	0	.	69
TAF5	6877	bcgsc.ca	37	10	105143046	105143046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TAF5	NM_006951	exon7	c.A1586G	p.D529G	.	.	211	6	495	1	.	92
TAGAP	117289	bcgsc.ca	37	6	159463130	159463130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TAGAP	NM_138810	exon5	c.A295G	p.T99A	.	.	76	4	166	0	.	91
TAOK2	9344	bcgsc.ca	37	16	29998692	29998692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TAOK2	NM_016151	exon16	c.C3099A	p.S1033R	.	.	60	4	79	0	.	521
TARM1	441864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54573362	54573362	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001135686	exon5	c.G711A	p.L237L	.	.	67	8	73	0	.	.
TBC1D1	23216	ucsc.edu	37	4	38016152	38016152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TBC1D1	NM_015173	exon3	c.T440C	p.I147T	.	.	36	6	66	1	.	91
TBC1D16	125058	bcgsc.ca	37	17	77921498	77921498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TBC1D16	NM_019020	exon9	c.G1674A	p.M558I	.	.	77	4	105	0	.	90
TBCE	6905	bcgsc.ca	37	1	235611662	235611662	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TBCE	NM_003193	exon16	c.1400-2A>G	.	.	.	140	6	208	0	.	90
TBX15	6913	broad.mit.edu	37	1	119469178	119469178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TBX15	NM_152380	exon3	c.A158G	p.Y53C	.	.	164	4	208	0	.	136
TDO2	6999	bcgsc.ca	37	4	156832659	156832659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TDO2	NM_005651	exon7	c.A629G	p.E210G	.	.	209	26	455	21	.	514
TDRD10	126668	bcgsc.ca	37	1	154516990	154516990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TDRD10	NM_182499	exon10	c.A794G	p.N265S	.	.	87	4	98	1	.	91
TEP1	7011	bcgsc.ca	37	14	20869629	20869629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TEP1	NM_007110	exon8	c.C1378A	p.L460M	.	.	70	4	149	0	.	95
TGM2	7052	bcgsc.ca	37	20	36776472	36776472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TGM2	NM_198951	exon5	c.A572G	p.D191G	.	.	70	4	63	1	.	155
THNSL1	79896	bcgsc.ca	37	10	25314346	25314346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	THNSL1	NM_024838	exon3	c.A2194G	p.S732G	.	.	270	7	281	0	.	91
THOC1	9984	bcgsc.ca	37	18	247940	247940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	THOC1	NM_005131	exon10	c.A695T	p.Y232F	.	.	83	4	210	0	.	91
TIGD2	166815	bcgsc.ca	37	4	90035334	90035334	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TIGD2	NM_145715	exon1	c.A1209G	p.G403G	.	.	68	4	146	0	.	90
TIRAP	114609	bcgsc.ca	37	11	126162940	126162940	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TIRAP	NM_148910	exon5	c.T636C	p.A212A	.	.	38	6	92	1	.	523
TLE1	7088	bcgsc.ca	37	9	84230951	84230951	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TLE1	NM_005077	exon11	c.T864C	p.A288A	.	.	83	4	111	1	.	92
TLE4	7091	broad.mit.edu	37	9	82339990	82339990	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TLE4	NM_007005	exon20	c.C2253T	p.S751S	.	.	105	4	216	0	.	524
TMEM106B	54664	bcgsc.ca	37	7	12271586	12271586	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TMEM106B	NM_001134232	exon8	c.T810C	p.L270L	.	.	92	21	156	5	.	90
TMEM130	222865	bcgsc.ca	37	7	98453731	98453731	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TMEM130	NM_152913	exon4	c.A627G	p.K209K	.	.	69	4	72	0	.	91
TMEM151B	441151	ucsc.edu;bcgsc.ca	37	6	44243417	44243417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001137560	exon3	c.T854C	p.V285A	.	.	29	4	27	0	.	.
TMEM81	388730	bcgsc.ca	37	1	205053046	205053046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TMEM81	NM_203376	exon1	c.T403C	p.F135L	.	.	133	5	201	1	.	68
TMPO	7112	bcgsc.ca	37	12	98938796	98938796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TMPO	NM_001032283	exon7	c.A947G	p.D316G	.	.	78	4	157	0	.	93
TNPO1	3842	hgsc.bcm.edu;bcgsc.ca	37	5	72144303	72144303	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TNPO1	NM_002270	exon2	c.107delC	p.T36fs	.	.	68	30	46	0	.	228
TOR1B	27348	bcgsc.ca	37	9	132571807	132571807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TOR1B	NM_014506	exon5	c.A956G	p.K319R	.	.	66	4	114	0	.	90
TPM4	7171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16186928	16186928	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TPM4	NM_001145160	exon2	c.G186C	p.E62D	.	.	179	95	194	0	.	316
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65705902	65705902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TPST1	NM_003596	exon2	c.C490G	p.L164V	.	.	82	32	126	0	.	90
TRAPPC6B	122553	bcgsc.ca	37	14	39620986	39620986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRAPPC6B	NM_001079537	exon5	c.A409G	p.S137G	.	.	184	6	445	0	.	90
TRAT1	50852	broad.mit.edu	37	3	108549564	108549564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRAT1	NM_016388	exon2	c.G55A	p.G19S	.	.	349	9	774	0	.	227
TRIT1	54802	bcgsc.ca	37	1	40318525	40318525	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRIT1	NM_017646	exon4	c.A438G	p.K146K	.	.	122	5	264	0	.	91
TRPM1	4308	bcgsc.ca	37	15	31358329	31358329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRPM1	NM_001252020	exon6	c.A791G	p.K264R	.	.	194	6	267	3	.	94
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3417232	3417232	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRPV3	NM_001258205	exon18	c.A2355G	p.E785E	.	.	217	71	314	1	.	94
TRRAP	8295	bcgsc.ca	37	7	98529290	98529290	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TRRAP	NM_003496	exon26	c.3852+2T>C	.	.	.	80	5	92	0	.	923
TSC1	7248	bcgsc.ca	37	9	135798839	135798839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TSC1	NM_000368	exon6	c.T404C	p.V135A	.	.	85	4	139	0	.	1906
TTC31	64427	bcgsc.ca	37	2	74718257	74718257	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTC31	NM_022492	exon6	c.T549C	p.R183R	.	.	62	4	101	0	.	90
TTC3	7267	bcgsc.ca	37	21	38560895	38560895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTC3	NM_001001894	exon39	c.C5023T	p.R1675C	.	.	125	6	211	0	.	590
TTC39A	22996	bcgsc.ca	37	1	51777835	51777835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTC39A	NM_001144832	exon4	c.T323C	p.F108S	.	.	33	4	85	1	.	23
TTN	7273	bcgsc.ca	37	2	179411621	179411621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon341	c.A94534G	p.R31512G	.	.	76	5	87	0	.	636
TTN	7273	bcgsc.ca	37	2	179425791	179425791	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon326	c.A85068G	p.R28356R	.	.	132	5	203	1	.	636
TTN	7273	bcgsc.ca	37	2	179605268	179605268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon48	c.A12692G	p.E4231G	.	.	386	33	584	20	.	636
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179532037	179532037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon162	c.C35723T	p.T11908I	.	.	160	42	280	1	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179412302	179412302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TTN	NM_001267550	exon339	c.T94051C	p.S31351P	.	.	166	31	246	0	.	636
TVP23A	780776	bcgsc.ca	37	16	10864145	10864145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001079512	exon7	c.A626G	p.E209G	.	.	92	6	128	0	.	.
TXNDC11	51061	ucsc.edu	37	16	11785773	11785773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	TXNDC11	NM_015914	exon8	c.A1273G	p.N425D	.	.	46	4	59	0	.	90
U2AF2	11338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56185355	56185355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	U2AF2	NM_007279	exon12	c.C1349T	p.T450M	.	.	106	22	123	0	.	91
UBR4	23352	bcgsc.ca	37	1	19420530	19420530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	UBR4	NM_020765	exon95	c.T13850C	p.L4617P	.	.	86	4	186	0	.	612
UBR4	23352	bcgsc.ca	37	1	19499678	19499678	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	UBR4	NM_020765	exon24	c.A3288G	p.R1096R	.	.	50	4	159	1	.	612
UGGT2	55757	bcgsc.ca	37	13	96536898	96536898	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	UGGT2	NM_020121	exon27	c.A3075G	p.S1025S	.	.	145	5	337	0	.	92
UNC13C	440279	bcgsc.ca	37	15	54630674	54630674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	UNC13C	NM_001080534	exon15	c.A4700G	p.Q1567R	.	.	96	4	131	1	.	51
USP28	57646	broad.mit.edu;bcgsc.ca	37	11	113699932	113699932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	USP28	NM_020886	exon10	c.A1046G	p.K349R	.	.	70	6	164	0	.	706
USP40	55230	bcgsc.ca	37	2	234434184	234434184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	USP40	NM_018218	exon13	c.A1783G	p.M595V	.	.	69	4	105	0	.	455
USP9X	8239	bcgsc.ca	37	X	41078396	41078396	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	USP9X	NM_001039591	exon38	c.A6477G	p.A2159A	.	.	173	6	287	0	.	563
UTP15	84135	bcgsc.ca	37	5	72875855	72875855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	UTP15	NM_032175	exon13	c.A1493G	p.E498G	.	.	128	5	175	0	.	90
VENTX	27287	bcgsc.ca	37	10	135051452	135051452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	VENTX	NM_014468	exon1	c.C34A	p.Q12K	.	.	19	3	40	0	.	90
VPS13B	157680	bcgsc.ca	37	8	100443784	100443784	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	VPS13B	NM_152564	exon22	c.T3102C	p.V1034V	.	.	44	4	79	0	.	301
VPS33B	26276	bcgsc.ca	37	15	91544636	91544636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	VPS33B	NM_018668	exon19	c.A1462G	p.S488G	.	.	182	7	228	0	.	92
VRK1	7443	bcgsc.ca	37	14	97312479	97312479	+	Silent	SNP	A	A	G	rs200368952		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	VRK1	NM_003384	exon4	c.A264G	p.Q88Q	.	.	159	5	395	1	A|0.999;G|0.001	358
WBSCR22	114049	bcgsc.ca	37	7	73108328	73108328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WBSCR22	NM_001202560	exon10	c.A649G	p.S217G	.	.	78	5	92	0	.	90
WDFY4	57705	bcgsc.ca	37	10	50004383	50004383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WDFY4	NM_020945	exon24	c.A4298G	p.N1433S	.	.	138	6	155	0	.	22
WDR11	55717	bcgsc.ca	37	10	122649500	122649500	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WDR11	NM_018117	exon18	c.T2322C	p.A774A	.	.	63	4	153	0	.	226
WDR26	80232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224585919	224585919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WDR26	NM_025160	exon12	c.T1654A	p.L552I	.	.	95	30	156	0	.	90
WDR66	144406	bcgsc.ca	37	12	122359545	122359545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WDR66	NM_001178003	exon2	c.A334G	p.T112A	.	.	187	7	275	3	.	92
WHAMMP2	440253	ucsc.edu	37	15	28991148	28991148	+	RNA	SNP	G	G	C	rs200178304		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	.	.	.	.	.	.	81	12	109	3	G|0.998;C|0.002	.
WHSC1L1	54904	bcgsc.ca	37	8	38205193	38205193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	WHSC1L1	NM_017778	exon2	c.A497G	p.E166G	.	.	202	51	612	40	.	658
XXYLT1	152002	bcgsc.ca	37	3	194947473	194947473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_152531	exon2	c.T617C	p.F206S	.	.	151	7	176	2	.	.
YIPF1	54432	bcgsc.ca	37	1	54344050	54344050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	YIPF1	NM_018982	exon6	c.T302C	p.L101P	.	.	68	4	156	0	.	154
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100392945	100392945	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZAN	.	.	.	.	.	.	40	6	52	1	.	142
ZBTB38	253461	bcgsc.ca	37	3	141164352	141164352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZBTB38	NM_001080412	exon8	c.A3122G	p.K1041R	.	.	71	4	101	1	.	25
ZC3H12C	85463	bcgsc.ca	37	11	110030057	110030057	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZC3H12C	NM_033390	exon4	c.A990G	p.R330R	.	.	84	4	177	1	.	68
ZFHX4	79776	bcgsc.ca	37	8	77765058	77765058	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZFHX4	NM_024721	exon10	c.T5901C	p.H1967H	.	.	79	4	115	0	.	98
ZFP69B	65243	bcgsc.ca	37	1	40929226	40929226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_023070	exon5	c.A1570G	p.T524A	.	.	173	7	330	0	.	.
ZFX	7543	broad.mit.edu	37	X	24229225	24229225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZFX	NM_003410	exon10	c.T2150C	p.L717P	.	.	479	6	788	2	.	132
ZGPAT	84619	bcgsc.ca	37	20	62364614	62364614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZGPAT	NM_032527	exon3	c.T628C	p.F210L	.	.	97	6	88	1	.	90
ZKSCAN7	55888	bcgsc.ca	37	3	44606984	44606984	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_018651	exon3	c.A429G	p.S143S	.	.	85	4	166	0	.	.
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45920579	45920579	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZMYND8	NM_183047	exon6	c.A621G	p.E207E	.	.	82	31	144	0	.	252
ZNF14	7561	bcgsc.ca	37	19	19822938	19822938	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF14	NM_021030	exon4	c.T1152C	p.T384T	.	.	89	4	131	0	.	517
ZNF280A	129025	bcgsc.ca	37	22	22869097	22869097	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF280A	NM_080740	exon2	c.A858G	p.G286G	.	.	99	4	259	1	.	69
ZNF300	91975	bcgsc.ca	37	5	150276185	150276185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF300	NM_001172831	exon7	c.A664G	p.S222G	.	.	220	6	343	0	.	92
ZNF439	90594	bcgsc.ca	37	19	11978999	11978999	+	Missense_Mutation	SNP	A	A	G	rs147858709	alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	ZNF439,upper_leg,malignant_melanoma,0	ZNF439	NM_152262	exon3	c.A1115G	p.H372R	.	.	74	5	134	0	.	91
ZNF471	57573	bcgsc.ca	37	19	57035938	57035938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF471	NM_020813	exon5	c.A502G	p.I168V	.	.	84	4	127	1	.	154
ZNF528	84436	bcgsc.ca	37	19	52919357	52919357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF528	NM_032423	exon7	c.T1252C	p.F418L	.	.	98	4	166	0	.	92
ZNF550	162972	bcgsc.ca	37	19	58058836	58058836	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF550	.	.	.	.	.	.	160	5	239	0	.	90
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53014251	53014251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_001099694	exon6	c.A617C	p.N206T	.	.	233	14	398	0	.	.
ZNF676	163223	bcgsc.ca	37	19	22363411	22363411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF676	NM_001001411	exon3	c.T1108C	p.C370R	.	.	77	4	108	0	.	90
ZNF695	57116	bcgsc.ca	37	1	247151277	247151277	+	Silent	SNP	T	T	C	rs191150113	byfrequency;alternate_allele	TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	.	NM_020394	exon4	c.A540G	p.G180G	.	.	221	6	348	1	T|0.999;G|0.001	.
ZNF765	91661	broad.mit.edu	37	19	53911279	53911279	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF765	NM_001040185	exon4	c.A471G	p.E157E	.	.	227	5	339	0	.	69
ZNF768	79724	bcgsc.ca	37	16	30536504	30536504	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF768	NM_024671	exon2	c.T957C	p.C319C	.	.	92	9	153	5	.	90
ZNF793	390927	bcgsc.ca	37	19	38028112	38028112	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF793	NM_001013659	exon8	c.A552G	p.G184G	.	.	73	4	126	0	.	68
ZNF804B	219578	bcgsc.ca	37	7	88965673	88965673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF804B	NM_181646	exon4	c.A3377G	p.D1126G	.	.	50	4	94	0	.	101
ZNF839	55778	bcgsc.ca	37	14	102807696	102807696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF839	NM_018335	exon8	c.G1964A	p.R655H	.	.	135	6	279	0	.	91
ZNF879	345462	bcgsc.ca	37	5	178459885	178459885	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF879	NM_001136116	exon5	c.A936G	p.G312G	.	.	79	5	100	0	.	47
ZNF91	7644	bcgsc.ca	37	19	23542700	23542700	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZNF91	NM_003430	exon4	c.T3081C	p.C1027C	.	.	61	4	87	0	.	90
ZP2	7783	bcgsc.ca	37	16	21218204	21218204	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZP2	NM_003460	exon5	c.C438T	p.T146T	.	.	83	4	142	0	.	91
ZPBP2	124626	broad.mit.edu;bcgsc.ca	37	17	38029300	38029300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Q-01A-11D-A12Z-10	TCGA-BC-A10Q-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7e9eed5-7a0b-4b2d-bea3-fd8c42a3b90e	454f62ca-7688-48e6-8a59-0149d11f1fe3	.	ZPBP2	NM_199321	exon6	c.A629G	p.N210S	.	.	271	7	420	1	.	91
