Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A4GALT	53947	bcgsc.ca	37	22	43089055	43089055	+	Silent	SNP	G	G	C	rs6002904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	A4GALT	NM_017436	exon3	c.C903G	p.P301P	.	.	101	8	33	0	G|0.333;C|0.667	90
AACS	65985	bcgsc.ca	37	12	125561151	125561151	+	Missense_Mutation	SNP	A	A	G	rs11549081	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AACS	NM_023928	exon3	c.A352G	p.I118V	.	.	119	10	41	0	A|0.800;G|0.200	92
AAGAB	79719	bcgsc.ca	37	15	67500933	67500933	+	Missense_Mutation	SNP	T	T	C	rs36096355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AAGAB	NM_024666	exon7	c.A682G	p.N228D	.	.	169	7	60	0	T|0.997;C|0.003	90
AAGAB	79719	bcgsc.ca	37	15	67528360	67528360	+	Silent	SNP	A	A	G	rs34376980	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AAGAB	NM_024666	exon4	c.T408C	p.F136F	.	.	349	13	84	0	A|0.997;G|0.003	90
ABAT	18	bcgsc.ca	37	16	8844389	8844389	+	Silent	SNP	C	C	T	rs2229157	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABAT	NM_001127448	exon5	c.C309T	p.V103V	.	.	268	17	59	0	C|0.905;T|0.095	91
ABCA10	10349	bcgsc.ca	37	17	67150118	67150118	+	Silent	SNP	C	C	T	rs16973656	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA10	NM_080282	exon33	c.G3819A	p.R1273R	.	.	236	11	72	0	C|0.927;T|0.073	93
ABCA10	10349	hgsc.bcm.edu;bcgsc.ca	37	17	67152009	67152009	+	Silent	SNP	A	A	G	rs151287590	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA10	NM_080282	exon30	c.T3513C	p.D1171D	.	.	374	16	100	0	A|0.999;G|0.001	93
ABCA1	19	bcgsc.ca	37	9	107586753	107586753	+	Missense_Mutation	SNP	T	T	C	rs2066714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA1	NM_005502	exon18	c.A2649G	p.I883M	.	.	295	22	83	0	T|0.686;C|0.314	1016
ABCA1	19	bcgsc.ca	37	9	107602666	107602666	+	Silent	SNP	C	C	T	rs2246841	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA1	NM_005502	exon9	c.G948A	p.G316G	.	.	170	10	54	0	C|0.866;T|0.134	1016
ABCA1	19	bcgsc.ca	37	9	107624029	107624029	+	Silent	SNP	C	C	T	rs2230805	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA1	NM_005502	exon6	c.G474A	p.L158L	.	.	154	13	56	0	C|0.656;T|0.344	1016
ABCA11P	79963	broad.mit.edu;ucsc.edu	37	4	419639	419639	+	RNA	SNP	T	T	C	rs7681990	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	93	15	30	0	T|0.837;C|0.163	.
ABCA12	26154	bcgsc.ca	37	2	215820013	215820013	+	Silent	SNP	G	G	A	rs10498027	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon43	c.C6306T	p.Y2102Y	.	.	363	12	135	1	G|0.660;A|0.340	99
ABCA12	26154	bcgsc.ca	37	2	215839570	215839570	+	Silent	SNP	C	C	T	rs16853022	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon35	c.G5400A	p.T1800T	.	.	132	5	55	0	C|0.894;T|0.106	99
ABCA12	26154	bcgsc.ca	37	2	215876371	215876371	+	Silent	SNP	T	T	C	rs10198064	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon17	c.A2124G	p.A708A	.	.	420	17	192	1	T|0.734;C|0.266	99
ABCA12	26154	bcgsc.ca	37	2	215884068	215884068	+	Missense_Mutation	SNP	T	T	C	rs16853149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon13	c.A1649G	p.E550G	.	.	146	8	51	0	T|0.950;C|0.050	99
ABCA12	26154	bcgsc.ca	37	2	215914446	215914446	+	Missense_Mutation	SNP	C	C	G	rs16853238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon6	c.G597C	p.W199C	.	.	306	29	111	0	C|0.938;G|0.062	99
ABCA12	26154	bcgsc.ca;mdanderson.org	37	2	215914491	215914491	+	Silent	SNP	T	T	C	rs34273324	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon6	c.A552G	p.L184L	.	.	364	32	125	0	T|0.931;C|0.069	99
ABCA12	26154	ucsc.edu;bcgsc.ca	37	2	215910574	215910574	+	Missense_Mutation	SNP	G	G	C	rs11891778	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon7	c.C859G	p.R287G	.	.	104	12	43	0	G|0.963;C|0.037	99
ABCA12	26154	ucsc.edu;bcgsc.ca	37	2	215910612	215910612	+	Missense_Mutation	SNP	T	T	C	rs11890468	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA12	NM_173076	exon7	c.A821G	p.Q274R	.	.	124	15	40	0	T|0.957;C|0.043	99
ABCA13	154664	bcgsc.ca	37	7	48266876	48266876	+	Silent	SNP	C	C	A	rs17132152	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon6	c.C486A	p.T162T	.	.	381	11	122	0	C|0.987;A|0.013	521
ABCA13	154664	bcgsc.ca	37	7	48285167	48285167	+	Silent	SNP	A	A	G	rs113452211	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon12	c.A1449G	p.Q483Q	.	.	452	22	197	0	A|0.989;G|0.011	521
ABCA13	154664	bcgsc.ca	37	7	48311602	48311602	+	Missense_Mutation	SNP	G	G	A	rs116299940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.G2339A	p.S780N	.	.	175	9	72	0	G|0.988;A|0.012	521
ABCA13	154664	bcgsc.ca	37	7	48312490	48312490	+	Missense_Mutation	SNP	G	G	A	rs116705389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.G3227A	p.R1076H	.	.	163	6	66	0	G|0.989;A|0.011	521
ABCA13	154664	bcgsc.ca	37	7	48313256	48313256	+	Missense_Mutation	SNP	A	A	G	rs75846399	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.A3993G	p.I1331M	.	.	112	5	43	0	A|0.989;G|0.011	521
ABCA13	154664	bcgsc.ca	37	7	48313563	48313563	+	Missense_Mutation	SNP	A	A	G	rs17132195	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.A4300G	p.I1434V	.	.	115	8	75	0	A|0.988;G|0.012	521
ABCA13	154664	bcgsc.ca	37	7	48314330	48314330	+	Silent	SNP	A	A	G	rs17132196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.A5067G	p.L1689L	.	.	134	6	67	0	A|0.988;G|0.012	521
ABCA13	154664	bcgsc.ca	37	7	48315724	48315724	+	Missense_Mutation	SNP	C	C	T	rs17092911	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.C6461T	p.S2154L	.	.	163	7	68	0	C|0.988;T|0.012	521
ABCA13	154664	bcgsc.ca	37	7	48315898	48315898	+	Missense_Mutation	SNP	T	T	C	rs17132198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.T6635C	p.L2212S	.	.	148	7	90	0	T|0.988;C|0.012	521
ABCA13	154664	bcgsc.ca	37	7	48316055	48316055	+	Silent	SNP	A	A	G	rs17132201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon17	c.A6792G	p.T2264T	.	.	282	16	181	0	A|0.988;G|0.012	521
ABCA13	154664	bcgsc.ca	37	7	48317836	48317836	+	Missense_Mutation	SNP	G	G	A	rs111564118	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon18	c.G7045A	p.G2349R	.	.	162	5	81	0	G|0.989;A|0.011	521
ABCA13	154664	bcgsc.ca	37	7	48431529	48431529	+	Missense_Mutation	SNP	C	C	T	rs73697164		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon38	c.C11666T	p.T3889M	.	.	210	8	41	0	C|0.974;T|0.026	521
ABCA13	154664	bcgsc.ca	37	7	48450157	48450157	+	Silent	SNP	T	T	C	rs17548783	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA13	NM_152701	exon40	c.T12111C	p.A4037A	.	.	100	6	27	0	T|0.497;C|0.503	521
ABCA2	20	bcgsc.ca	37	9	139910772	139910772	+	Silent	SNP	G	G	A	rs73564312	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA2	NM_212533	exon21	c.C3165T	p.G1055G	.	.	176	15	51	0	G|0.987;A|0.013	90
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139904282	139904282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA2	NM_212533	exon43	c.G6659A	p.G2220D	.	.	129	38	70	0	.	90
ABCA4	24	bcgsc.ca	37	1	94467447	94467447	+	Silent	SNP	G	G	A	rs1801359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA4	NM_000350	exon45	c.C6249T	p.I2083I	.	.	84	9	37	0	G|0.860;A|0.140	162
ABCA6	23460	bcgsc.ca	37	17	67108362	67108362	+	Missense_Mutation	SNP	C	C	G	rs9282553	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA6	NM_080284	exon16	c.G2094C	p.M698I	.	.	192	12	57	0	C|0.691;G|0.309	159
ABCA6	23460	bcgsc.ca	37	17	67109493	67109493	+	Silent	SNP	A	A	G	rs2058128	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA6	NM_080284	exon15	c.T1911C	p.L637L	.	.	67	5	41	0	A|0.876;G|0.124	159
ABCA8	10351	bcgsc.ca	37	17	66928468	66928468	+	Missense_Mutation	SNP	G	G	C	rs62638729	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA8	NM_007168	exon6	c.C758G	p.A253G	.	.	134	7	58	0	G|0.920;C|0.080	93
ABCA8	10351	bcgsc.ca	37	17	66928470	66928470	+	Silent	SNP	C	C	T	rs28385895	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA8	NM_007168	exon6	c.G756A	p.K252K	.	.	133	7	56	0	C|0.926;T|0.074	93
ABCA8	10351	bcgsc.ca	37	17	66928545	66928545	+	Silent	SNP	A	A	G	rs16973450	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA8	NM_007168	exon6	c.T681C	p.F227F	.	.	228	13	83	0	A|0.937;G|0.063	93
ABCA9	10350	bcgsc.ca	37	17	67031882	67031882	+	Silent	SNP	A	A	G	rs16973534	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCA9	NM_080283	exon7	c.T861C	p.L287L	.	.	601	17	316	1	A|0.970;G|0.030	95
ABCB10	23456	bcgsc.ca	37	1	229685162	229685162	+	Silent	SNP	C	C	T	rs12080811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCB10	NM_012089	exon2	c.G537A	p.T179T	.	.	254	10	124	0	C|0.975;T|0.025	153
ABCB10	23456	ucsc.edu;bcgsc.ca	37	1	229683264	229683264	+	Silent	SNP	G	G	A	rs3738187	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCB10	NM_012089	exon3	c.C903T	p.S301S	.	.	104	13	67	0	G|0.689;A|0.311	153
ABCB11	8647	bcgsc.ca	37	2	169842746	169842746	+	Silent	SNP	T	T	C	rs7563233	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCB11	NM_003742	exon10	c.A957G	p.G319G	.	.	132	11	58	0	T|0.885;C|0.115	139
ABCB4	5244	bcgsc.ca	37	7	87092185	87092185	+	Silent	SNP	G	G	A	rs2302387	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCB4	NM_018850	exon4	c.C175T	p.L59L	.	.	205	13	78	0	G|0.744;A|0.256	96
ABCC12	94160	ucsc.edu;bcgsc.ca	37	16	48138272	48138272	+	Missense_Mutation	SNP	T	T	A	rs8057474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCC12	NM_033226	exon20	c.A2681T	p.K894M	.	.	107	11	72	0	T|0.970;A|0.030	93
ABCC1	4363	bcgsc.ca	37	16	16165585	16165585	+	Silent	SNP	C	C	T	rs8187859	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCC1	NM_004996	exon14	c.C1911T	p.D637D	.	.	172	6	52	0	C|0.995;T|0.005	94
ABCC1	4363	bcgsc.ca	37	16	16196494	16196494	+	Silent	SNP	C	C	T	rs2230672	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCC1	NM_004996	exon20	c.C2655T	p.G885G	.	.	80	7	36	0	C|0.984;T|0.016	94
ABCC2	1244	bcgsc.ca	37	10	101563785	101563785	+	Silent	SNP	C	C	T	rs17216198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCC2	NM_000392	exon10	c.C1219T	p.L407L	.	.	259	8	99	0	C|0.989;T|0.011	91
ABCC3	8714	bcgsc.ca	37	17	48744953	48744953	+	Silent	SNP	G	G	C	rs11568602	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCC3	NM_003786	exon12	c.G1470C	p.L490L	.	.	79	4	31	0	G|0.986;C|0.014	93
ABCC4	10257	bcgsc.ca	37	13	95839003	95839003	+	Silent	SNP	G	G	A	rs1557070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCC4	NM_005845	exon11	c.C1497T	p.Y499Y	.	.	306	8	141	0	G|0.915;A|0.085	515
ABCE1	6059	ucsc.edu;bcgsc.ca	37	4	146030326	146030326	+	Silent	SNP	A	A	T	rs139255095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABCE1	NM_002940	exon5	c.A330T	p.G110G	.	.	74	8	46	0	A|0.995;T|0.005	91
ABHD14A	25864	bcgsc.ca	37	3	52012000	52012000	+	Missense_Mutation	SNP	C	C	G	rs404527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABHD14A	NM_015407	exon2	c.C183G	p.C61W	.	.	98	5	49	0	C|0.709;G|0.291	90
ABHD15	116236	bcgsc.ca	37	17	27889963	27889963	+	Silent	SNP	C	C	G	rs721479	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABHD15	NM_198147	exon2	c.G1023C	p.P341P	.	.	89	5	42	0	C|0.776;G|0.224	90
ABI3BP	25890	bcgsc.ca	37	3	100617680	100617680	+	Silent	SNP	C	C	T	rs2245370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABI3BP	NM_015429	exon4	c.G408A	p.S136S	.	.	82	7	28	0	C|0.280;T|0.720	138
ABO	28	bcgsc.ca	37	9	136131188	136131188	+	RNA	SNP	C	C	T	rs8176749	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABO	.	.	.	.	.	.	110	5	64	0	C|0.870;T|0.130	90
ABO	28	bcgsc.ca	37	9	136131347	136131347	+	RNA	SNP	G	G	A	rs8176745	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABO	.	.	.	.	.	.	82	5	33	0	G|0.732;A|0.268	90
ABO	28	bcgsc.ca	37	9	136132873	136132873	+	RNA	SNP	T	T	C	rs8176720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABO	.	.	.	.	.	.	110	10	40	0	T|0.572;C|0.428	90
ABT1	29777	bcgsc.ca	37	6	26598744	26598744	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ABT1	NM_013375	exon3	c.A690G	p.G230G	.	.	82	4	46	0	.	91
ACACB	32	bcgsc.ca	37	12	109577229	109577229	+	Silent	SNP	C	C	T	rs79484712	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACACB	NM_001093	exon1	c.C19T	p.L7L	.	.	918	27	321	1	C|0.990;T|0.010	98
ACACB	32	bcgsc.ca	37	12	109671838	109671838	+	Silent	SNP	C	C	T	rs115320291	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACACB	NM_001093	exon30	c.C4335T	p.F1445F	.	.	125	9	66	0	C|0.995;T|0.005	98
ACAD11	84129	bcgsc.ca	37	3	132345648	132345648	+	Missense_Mutation	SNP	C	C	A	rs6776576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACAD11	NM_032169	exon9	c.G1084T	p.V362L	.	.	106	8	48	0	C|0.931;A|0.069	91
ACADM	34	bcgsc.ca	37	1	76216186	76216186	+	Silent	SNP	C	C	T	rs17097429	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACADM	NM_001127328	exon10	c.C912T	p.T304T	.	.	71	5	54	0	C|0.981;T|0.019	155
ACAT2	39	bcgsc.ca	37	6	160198359	160198359	+	Silent	SNP	C	C	T	rs3464	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACAT2	NM_005891	exon7	c.C783T	p.V261V	.	.	198	7	66	0	C|0.797;T|0.203	91
ACCS	84680	bcgsc.ca	37	11	44104981	44104981	+	Missense_Mutation	SNP	C	C	T	rs3107275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACCS	NM_032592	exon14	c.C1262T	p.P421L	.	.	132	7	79	0	C|0.575;T|0.425	155
ACCSL	390110	bcgsc.ca	37	11	44069883	44069883	+	Silent	SNP	G	G	A	rs77451436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACCSL	NM_001031854	exon1	c.G297A	p.E99E	.	.	129	6	71	0	G|0.993;A|0.007	95
ACCSL	390110	bcgsc.ca	37	11	44073268	44073268	+	Silent	SNP	C	C	T	rs200928902		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACCSL	NM_001031854	exon5	c.C771T	p.G257G	.	.	394	15	123	0	.	95
ACIN1	22985	bcgsc.ca	37	14	23530622	23530622	+	Silent	SNP	T	T	C	rs60168438	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACIN1	NM_014977	exon17	c.A3483G	p.S1161S	.	.	165	17	44	0	T|0.751;C|0.249	156
ACIN1	22985	bcgsc.ca	37	14	23549380	23549380	+	Silent	SNP	G	G	A	rs1885098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACIN1	NM_001164814	exon6	c.C1338T	p.P446P	.	.	318	10	105	0	G|0.871;A|0.129	156
ACIN1	22985	bcgsc.ca;mdanderson.org	37	14	23549785	23549785	+	Missense_Mutation	SNP	T	T	C	rs3811182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACIN1	NM_001164814	exon6	c.A933G	p.I311M	.	.	725	66	251	1	T|0.511;C|0.489	156
ACO1	48	bcgsc.ca	37	9	32425898	32425898	+	Silent	SNP	T	T	C	rs34319839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACO1	NM_002197	exon11	c.T1251C	p.Y417Y	.	.	199	7	63	0	T|0.959;C|0.041	226
ACO1	48	bcgsc.ca	37	9	32427396	32427396	+	Silent	SNP	A	A	G	rs35370505	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACO1	NM_002197	exon12	c.A1446G	p.L482L	.	.	218	14	109	0	A|0.947;G|0.053	226
ACOT11	26027	bcgsc.ca	37	1	55014007	55014007	+	Silent	SNP	C	C	T	rs61733132	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACOT11	NM_147161	exon1	c.C25T	p.L9L	.	.	211	8	55	0	C|0.985;T|0.015	90
ACOT11	26027	ucsc.edu	37	1	55073719	55073719	+	Missense_Mutation	SNP	G	G	A	rs12403630	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACOT11	NM_147161	exon15	c.G1607A	p.R536H	.	.	51	8	14	0	G|0.946;A|0.054	90
ACOT2	10965	bcgsc.ca	37	14	74040268	74040268	+	Missense_Mutation	SNP	A	A	G	rs202093592		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACOT2	NM_006821	exon2	c.A820G	p.M274V	.	.	535	14	228	0	A|0.999;G|0.000	91
ACOX2	8309	bcgsc.ca	37	3	58512237	58512237	+	Silent	SNP	A	A	G	rs1127745	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACOX2	NM_003500	exon10	c.T1302C	p.C434C	.	.	140	8	54	0	A|0.718;G|0.282	90
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58516293	58516293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACOX2	NM_003500	exon8	c.G892A	p.V298M	.	.	213	69	75	0	.	90
ACOX3	8310	bcgsc.ca	37	4	8390948	8390948	+	Missense_Mutation	SNP	C	C	T	rs13434465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACOX3	NM_001101667	exon13	c.G1489A	p.D497N	.	.	182	7	40	1	C|0.954;T|0.046	90
ACP1	52	bcgsc.ca	37	2	272203	272203	+	Missense_Mutation	SNP	C	C	T	rs11553746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACP1	NM_001040649	exon3	c.C284T	p.T95I	.	.	384	15	224	0	C|0.739;T|0.261	523
ACP1	52	bcgsc.ca	37	2	277003	277003	+	Missense_Mutation	SNP	A	A	G	rs79716074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACP1	NM_007099	exon5	c.A317G	p.Q106R	.	.	360	15	150	0	A|0.725;G|0.275	523
ACP6	51205	bcgsc.ca	37	1	147119257	147119257	+	Missense_Mutation	SNP	T	T	A	rs137987097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACP6	NM_016361	exon10	c.A1255T	p.T419S	.	.	260	7	56	0	T|0.991;A|0.009	94
ACPL2	92370	bcgsc.ca	37	3	141011630	141011630	+	Silent	SNP	C	C	T	rs3210458	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACPL2	NM_152282	exon8	c.C1026T	p.F342F	.	.	125	8	52	0	C|0.896;G|0.000;T|0.104	91
ACPP	55	bcgsc.ca	37	3	132075707	132075707	+	Silent	SNP	A	A	G	rs2071505	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACPP	NM_001099	exon10	c.A1146G	p.E382E	.	.	129	9	54	0	A|0.554;G|0.446	91
ACSF2	80221	bcgsc.ca	37	17	48539035	48539035	+	Silent	SNP	T	T	C	rs9674937	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSF2	NM_025149	exon4	c.T495C	p.Y165Y	.	.	162	10	48	0	T|0.644;C|0.356	68
ACSM1	116285	bcgsc.ca	37	16	20638576	20638576	+	Silent	SNP	A	A	T	rs1692729	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSM1	NM_052956	exon10	c.T1362A	p.G454G	.	.	247	17	74	0	A|0.549;T|0.451	91
ACSM1	116285	bcgsc.ca	37	16	20681288	20681288	+	Missense_Mutation	SNP	T	T	C	rs61742591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSM1	NM_052956	exon5	c.A773G	p.K258R	.	.	191	6	63	0	T|0.976;C|0.024	91
ACSM2A	123876	bcgsc.ca	37	16	20476852	20476852	+	Missense_Mutation	SNP	T	T	C	rs7187246	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSM2A	NM_001010845	exon4	c.T191C	p.L64P	.	.	391	24	145	0	T|0.595;C|0.405	91
ACSM2A	123876	bcgsc.ca	37	16	20486702	20486702	+	Missense_Mutation	SNP	A	A	G	rs144701679	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSM2A	NM_001010845	exon8	c.A913G	p.I305V	.	.	1323	34	407	0	A|0.982;G|0.018	91
ACSM3	6296	bcgsc.ca	37	16	20787243	20787243	+	Missense_Mutation	SNP	G	G	T	rs2229242	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSM3	NM_005622	exon3	c.G302T	p.G101V	.	.	239	8	78	0	G|0.995;T|0.005	91
ACSM4	341392	bcgsc.ca	37	12	7470633	7470633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080454	exon5	c.A776G	p.D259G	.	.	542	48	185	1	.	.
ACSS1	84532	bcgsc.ca	37	20	25011423	25011423	+	Silent	SNP	T	T	C	rs6050259	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACSS1	NM_001252677	exon3	c.A603G	p.A201A	.	.	92	6	27	0	T|0.725;C|0.275	92
ACTL7A	10881	bcgsc.ca	37	9	111625620	111625620	+	Missense_Mutation	SNP	G	G	A	rs7872077	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTL7A	NM_006687	exon1	c.G1018A	p.V340M	.	.	120	10	42	0	G|0.936;A|0.064	90
ACTN2	88	hgsc.bcm.edu;bcgsc.ca	37	1	236918483	236918483	+	Silent	SNP	G	G	A	rs34975493	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTN2	NM_001103	exon17	c.G2139A	p.T713T	.	.	108	7	57	0	G|0.969;A|0.031	95
ACTN4	81	bcgsc.ca	37	19	39196736	39196736	+	Silent	SNP	G	G	A	rs11553600	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTN4	NM_004924	exon5	c.G537A	p.P179P	.	.	115	6	39	0	G|0.852;A|0.148	90
ACTN4	81	bcgsc.ca	37	19	39219780	39219780	+	Silent	SNP	T	T	C	rs1136956	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTN4	NM_004924	exon20	c.T2563C	p.L855L	.	.	116	5	46	0	T|0.788;C|0.212	90
ACTR5	79913	bcgsc.ca	37	20	37383640	37383640	+	Silent	SNP	T	T	C	rs2748663	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTR5	NM_024855	exon4	c.T816C	p.N272N	.	.	292	13	115	0	C|0.243;N|0.000	90
ACTR8	93973	bcgsc.ca	37	3	53905308	53905308	+	Silent	SNP	T	T	C	rs1046677	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTR8	NM_022899	exon11	c.A1518G	p.G506G	.	.	272	21	75	0	T|0.410;C|0.590	91
ACTR8	93973	bcgsc.ca	37	3	53906513	53906513	+	Silent	SNP	G	G	A	rs4687757	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACTR8	NM_022899	exon10	c.C1200T	p.I400I	.	.	169	13	68	0	G|0.411;A|0.589	91
ACVR1C	130399	hgsc.bcm.edu;bcgsc.ca	37	2	158406777	158406777	+	Silent	SNP	G	G	A	rs115029463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACVR1C	NM_145259	exon4	c.C672T	p.F224F	.	.	394	28	128	0	G|0.993;A|0.007	1006
ACYP2	98	bcgsc.ca	37	2	54362591	54362591	+	Silent	SNP	T	T	A	rs13405053	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ACYP2	NM_138448	exon2	c.T60A	p.G20G	.	.	158	7	77	0	T|0.982;A|0.018	226
ADA	100	bcgsc.ca	37	20	43252915	43252915	+	Silent	SNP	T	T	C	rs244076	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADA	NM_000022	exon6	c.A534G	p.V178V	.	.	147	8	51	0	T|0.751;C|0.249	653
ADA	100	bcgsc.ca	37	20	43254298	43254298	+	Silent	SNP	C	C	T	rs61737144	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADA	NM_000022	exon5	c.G390A	p.V130V	.	.	156	8	51	0	C|0.960;T|0.040	653
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123304976	123304976	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAD1	NM_139243	exon5	c.T384C	p.F128F	.	.	369	134	165	0	.	90
ADAD2	161931	bcgsc.ca	37	16	84230500	84230500	+	Silent	SNP	A	A	C	rs2303243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAD2	NM_139174	exon11	c.A1918C	p.R640R	.	.	113	18	35	0	A|0.666;C|0.334	68
ADAL	161823	ucsc.edu;bcgsc.ca	37	15	43632549	43632549	+	Silent	SNP	T	T	C	rs2278857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAL	NM_001012969	exon6	c.T342C	p.T114T	.	.	129	13	64	0	T|0.487;C|0.513	90
ADAM10	102	bcgsc.ca	37	15	58938374	58938374	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM10	NM_001110	exon6	c.T615C	p.G205G	.	.	111	5	47	0	.	227
ADAM12	8038	bcgsc.ca	37	10	127753478	127753478	+	Silent	SNP	G	G	A	rs1278279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM12	NM_021641	exon14	c.C1515T	p.N505N	.	.	104	9	37	0	G|0.726;A|0.274	716
ADAM19	8728	bcgsc.ca	37	5	156917340	156917340	+	Missense_Mutation	SNP	A	A	C	rs10067096	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM19	NM_033274	exon19	c.T2218G	p.S740A	.	.	154	8	81	0	A|0.827;C|0.173	294
ADAM19	8728	hgsc.bcm.edu;bcgsc.ca	37	5	156946940	156946940	+	Silent	SNP	C	C	T	rs34711517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM19	NM_033274	exon6	c.G507A	p.P169P	.	.	199	11	67	0	C|0.984;T|0.016	294
ADAM19	8728	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	156926617	156926617	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM19	NM_033274	exon13	c.G1362A	p.A454A	.	.	250	17	95	0	.	294
ADAM21P1	145241	bcgsc.ca	37	14	70713586	70713586	+	RNA	SNP	T	T	G	rs150958502		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	84	5	54	0	T|0.881;G|0.120	.
ADAM21P1	145241	bcgsc.ca	37	14	70713981	70713981	+	RNA	SNP	A	A	G	rs12586570	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	217	19	67	1	A|0.855;G|0.145	.
ADAM21P1	145241	bcgsc.ca	37	14	70714091	70714091	+	RNA	SNP	C	C	T	rs117006186	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	243	7	88	0	C|0.952;T|0.048	.
ADAM22	53616	bcgsc.ca	37	7	87754915	87754915	+	Missense_Mutation	SNP	G	G	A	rs17255978	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM22	NM_021722	exon8	c.G619A	p.V207I	.	.	224	9	109	0	G|0.933;A|0.067	230
ADAM23	8745	bcgsc.ca	37	2	207459467	207459467	+	Silent	SNP	C	C	T	rs3732079	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM23	NM_003812	exon23	c.C2085T	p.A695A	.	.	521	20	174	0	C|0.856;G|0.000;T|0.144	228
ADAM28	10863	bcgsc.ca	37	8	24199218	24199218	+	Missense_Mutation	SNP	C	C	A	rs36041430	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM28	NM_014265	exon16	c.C1778A	p.T593K	.	.	236	16	173	0	C|0.922;A|0.078	228
ADAM28	10863	bcgsc.ca	37	8	24207399	24207399	+	Silent	SNP	G	G	C	rs7829944	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM28	NM_014265	exon19	c.G2013C	p.V671V	.	.	213	7	106	0	G|0.947;C|0.053	228
ADAM28	10863	bcgsc.ca	37	8	24207438	24207438	+	Missense_Mutation	SNP	G	G	A	rs7829965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM28	NM_014265	exon19	c.G2052A	p.M684I	.	.	188	7	97	0	G|0.931;A|0.069	228
ADAM28	10863	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	24178738	24178738	+	Missense_Mutation	SNP	G	G	T	rs9314282	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM28	NM_014265	exon8	c.G656T	p.R219M	.	.	190	22	125	0	G|0.961;T|0.039	228
ADAM30	11085	bcgsc.ca	37	1	120436751	120436751	+	Missense_Mutation	SNP	T	T	C	rs35273427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM30	NM_021794	exon1	c.A2209G	p.T737A	.	.	1005	49	412	0	T|0.878;C|0.122	228
ADAM30	11085	bcgsc.ca	37	1	120437884	120437884	+	Missense_Mutation	SNP	A	A	G	rs2641348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM30	NM_021794	exon1	c.T1076C	p.L359P	.	.	227	7	79	0	A|0.830;G|0.170	228
ADAM32	203102	bcgsc.ca	37	8	39091526	39091526	+	Silent	SNP	T	T	C	rs4515515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM32	NM_145004	exon16	c.T1743C	p.T581T	.	.	128	10	44	0	T|0.781;C|0.219	227
ADAM32	203102	bcgsc.ca	37	8	39141120	39141120	+	Missense_Mutation	SNP	C	C	A	rs28705715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM32	NM_145004	exon24	c.C2334A	p.D778E	.	.	322	20	214	0	C|0.913;A|0.087	227
ADAM33	80332	bcgsc.ca	37	20	3650205	3650205	+	Missense_Mutation	SNP	G	G	A	rs2280090	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM33	NM_025220	exon20	c.C2320T	p.P774S	.	.	120	7	34	0	G|0.872;A|0.128	291
ADAM33	80332	bcgsc.ca	37	20	3650234	3650234	+	Missense_Mutation	SNP	A	A	G	rs2280091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAM33	NM_025220	exon20	c.T2291C	p.M764T	.	.	123	7	32	0	A|0.871;G|0.129	291
ADAMTS10	81794	ucsc.edu	37	19	8651562	8651562	+	Silent	SNP	A	A	G	rs4476282	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS10	NM_030957	exon20	c.T2283C	p.P761P	.	.	84	10	20	0	A|0.790;G|0.210	229
ADAMTS12	81792	bcgsc.ca	37	5	33527307	33527307	+	Missense_Mutation	SNP	A	A	G	rs16891281	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS12	NM_030955	exon24	c.T4771C	p.S1591P	.	.	600	27	227	0	A|0.922;G|0.078	232
ADAMTS16	170690	bcgsc.ca	37	5	5146395	5146395	+	Missense_Mutation	SNP	A	A	G	rs1863968	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS16	NM_139056	exon3	c.A328G	p.M110V	.	.	120	7	31	0	G|0.499;N|0.001	275
ADAMTS16	170690	bcgsc.ca	37	5	5303774	5303774	+	Silent	SNP	C	C	T	rs73738806		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS16	NM_139056	exon20	c.C3081T	p.D1027D	.	.	114	6	59	0	C|0.984;T|0.016	275
ADAMTS18	170692	bcgsc.ca	37	16	77325325	77325325	+	Missense_Mutation	SNP	G	G	T	rs35478105	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS18	NM_199355	exon21	c.C3240A	p.S1080R	.	.	159	9	66	0	G|0.666;T|0.334	1036
ADAMTS19	171019	bcgsc.ca	37	5	128844838	128844838	+	Silent	SNP	A	A	G	rs28630040	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS19	NM_133638	exon3	c.A798G	p.T266T	.	.	100	7	31	0	A|0.892;G|0.108	295
ADAMTS20	80070	bcgsc.ca	37	12	43856738	43856738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS20	NM_025003	exon11	c.A1574G	p.H525R	.	.	151	5	52	0	.	795
ADAMTS2	9509	bcgsc.ca	37	5	178562967	178562967	+	Silent	SNP	G	G	A	rs1972715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS2	NM_014244	exon13	c.C2028T	p.D676D	.	.	133	9	30	0	G|0.775;A|0.225	228
ADAMTS2	9509	bcgsc.ca	37	5	178770981	178770981	+	Silent	SNP	A	A	G	rs2271212	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS2	NM_021599	exon2	c.T321C	p.S107S	.	.	188	9	58	0	A|0.677;G|0.323	228
ADAMTS5	11096	bcgsc.ca	37	21	28305212	28305212	+	Missense_Mutation	SNP	C	C	T	rs2830585	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	ADAMTS5,NS,carcinoma,+1	ADAMTS5	NM_007038	exon5	c.G1841A	p.R614H	.	.	208	10	42	0	C|0.872;T|0.128	229
ADAMTS6	11174	bcgsc.ca	37	5	64521970	64521970	+	Silent	SNP	G	G	A	rs150199831	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTS6	NM_197941	exon16	c.C2010T	p.I670I	.	.	126	8	54	0	G|0.995;A|0.005	226
ADAMTSL1	92949	ucsc.edu;bcgsc.ca	37	9	18775810	18775810	+	Missense_Mutation	SNP	C	C	A	rs934472	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTSL1	NM_001040272	exon18	c.C2467A	p.L823I	.	.	116	15	28	0	C|0.566;A|0.434	230
ADAMTSL3	57188	bcgsc.ca	37	15	84639350	84639350	+	Missense_Mutation	SNP	C	C	T	rs2277849	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTSL3	NM_207517	exon20	c.C2605T	p.L869F	.	.	164	10	59	0	C|0.712;T|0.288	1153
ADAMTSL4	54507	bcgsc.ca	37	1	150526406	150526406	+	Silent	SNP	C	C	T	rs6681639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTSL4	NM_019032	exon6	c.C939T	p.G313G	.	.	78	6	28	0	C|0.647;T|0.353	92
ADAMTSL4	54507	ucsc.edu;bcgsc.ca	37	1	150526044	150526044	+	Missense_Mutation	SNP	G	G	C	rs41317515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAMTSL4	NM_019032	exon6	c.G577C	p.A193P	.	.	130	15	33	0	G|0.456;C|0.544	92
ADAT2	134637	bcgsc.ca	37	6	143749615	143749615	+	Missense_Mutation	SNP	T	T	A	rs61737651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADAT2	NM_182503	exon6	c.A561T	p.E187D	.	.	368	12	108	0	T|0.959;A|0.041	90
ADCY10	55811	bcgsc.ca	37	1	167865871	167865871	+	Missense_Mutation	SNP	G	G	A	rs16859886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY10	NM_018417	exon7	c.C701T	p.T234M	.	.	159	6	60	0	G|0.903;A|0.097	493
ADCY2	108	bcgsc.ca	37	5	7707918	7707918	+	Silent	SNP	C	C	T	rs34899441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY2	NM_020546	exon9	c.C1368T	p.H456H	.	.	210	12	93	0	C|0.949;T|0.051	97
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7717314	7717314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY2	NM_020546	exon12	c.G1667A	p.R556K	.	.	882	304	369	0	.	97
ADCY7	113	ucsc.edu	37	16	50339483	50339483	+	Silent	SNP	G	G	A	rs11861332	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY7	NM_001114	exon12	c.G1665A	p.G555G	.	.	102	9	23	0	G|0.965;A|0.035	91
ADCY8	114	bcgsc.ca	37	8	132002770	132002770	+	Silent	SNP	G	G	A	rs2228950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY8	NM_001115	exon2	c.C979T	p.L327L	.	.	198	15	47	0	G|0.692;A|0.308	157
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131896992	131896992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY8	NM_001115	exon8	c.A1927G	p.T643A	.	.	644	204	93	0	.	157
ADCY9	115	bcgsc.ca	37	16	4016943	4016943	+	Silent	SNP	A	A	G	rs3730138	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY9	NM_001116	exon11	c.T2895C	p.S965S	.	.	51	4	34	0	A|0.856;G|0.144	139
ADCY9	115	bcgsc.ca	37	16	4033436	4033436	+	Missense_Mutation	SNP	T	T	C	rs2230739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCY9	NM_001116	exon7	c.A2316G	p.I772M	.	.	108	5	44	0	T|0.736;C|0.264	139
ADCYAP1R1	117	bcgsc.ca	37	7	31123789	31123789	+	Missense_Mutation	SNP	A	A	G	rs149008212	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADCYAP1R1	NM_001118	exon7	c.A362G	p.D121G	.	.	518	17	198	1	A|0.999;G|0.001	91
ADD2	119	bcgsc.ca	37	2	70933459	70933459	+	Missense_Mutation	SNP	C	C	T	rs4986	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADD2	NM_001185055	exon2	c.G130A	p.D44N	.	.	110	11	57	0	C|0.975;T|0.025	93
ADGB	79747	bcgsc.ca	37	6	147038089	147038089	+	Missense_Mutation	SNP	G	G	T	rs61748896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024694	exon15	c.G1812T	p.E604D	.	.	98	5	54	0	G|0.941;T|0.059	.
ADH1B	125	bcgsc.ca	37	4	100229017	100229017	+	Missense_Mutation	SNP	G	G	A	rs55868078		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADH1B	NM_000668	exon9	c.C1108T	p.R370C	.	.	252	7	124	0	.	136
ADIPOR2	79602	bcgsc.ca	37	12	1863625	1863625	+	Missense_Mutation	SNP	A	A	G	rs12298275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADIPOR2	NM_024551	exon2	c.A116G	p.Q39R	.	.	162	9	88	0	A|0.986;G|0.014	90
ADRA1A	148	ucsc.edu;bcgsc.ca	37	8	26628028	26628028	+	Missense_Mutation	SNP	A	A	G	rs1048101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ADRA1A	NM_033303	exon2	c.T1039C	p.C347R	.	.	59	10	29	0	T|0.076;G|0.466	587
AEBP2	121536	bcgsc.ca	37	12	19626205	19626205	+	Silent	SNP	T	T	C	rs56666201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AEBP2	NM_001114176	exon3	c.T903C	p.G301G	.	.	152	7	62	0	T|0.923;C|0.077	23
AFAP1	60312	bcgsc.ca	37	4	7783172	7783172	+	Silent	SNP	G	G	A	rs77207711	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AFAP1	NM_001134647	exon13	c.C1713T	p.Y571Y	.	.	248	11	111	0	G|0.870;A|0.130	90
AFAP1	60312	bcgsc.ca	37	4	7783286	7783286	+	Silent	SNP	G	G	A	rs10516189	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AFAP1	NM_001134647	exon13	c.C1599T	p.N533N	.	.	210	11	111	0	G|0.734;A|0.266	90
AGAP3	116988	bcgsc.ca	37	7	150814804	150814804	+	Silent	SNP	C	C	T	rs61740575		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGAP3	NM_001042535	exon5	c.C646T	p.L216L	.	.	491	18	144	1	C|0.993;T|0.007	92
AGAP6	414189	hgsc.bcm.edu;bcgsc.ca	37	10	51769404	51769404	+	Missense_Mutation	SNP	C	C	T	rs187547602	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGAP6	NM_001077665	exon8	c.C1519T	p.R507C	.	.	268	14	68	0	C|0.994;T|0.006	1
AGBL1	123624	bcgsc.ca	37	15	86838497	86838497	+	Silent	SNP	C	C	T	rs9630451	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152336	exon16	c.C2094T	p.D698D	.	.	66	4	37	0	C|0.819;T|0.181	.
AGBL1	123624	bcgsc.ca	37	15	87099508	87099508	+	Missense_Mutation	SNP	G	G	A	rs73459659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152336	exon21	c.G2911A	p.G971S	.	.	393	11	93	0	G|0.963;A|0.037	.
AGBL1	123624	hgsc.bcm.edu;bcgsc.ca	37	15	87089307	87089307	+	Silent	SNP	G	G	A	rs61744083	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152336	exon19	c.G2622A	p.L874L	.	.	371	25	129	0	G|0.991;A|0.009	.
AGBL3	340351	bcgsc.ca	37	7	134718954	134718954	+	Silent	SNP	C	C	T	rs74319573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_178563	exon7	c.C612T	p.H204H	.	.	217	9	87	0	C|0.993;T|0.007	.
AGBL4	84871	bcgsc.ca	37	1	49128904	49128904	+	Missense_Mutation	SNP	C	C	T	rs75333004		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGBL4	NM_032785	exon7	c.G644A	p.R215Q	.	.	219	14	78	0	C|0.978;T|0.022	137
AGBL5	60509	bcgsc.ca	37	2	27277993	27277993	+	Silent	SNP	T	T	C	rs17005799	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGBL5	NM_021831	exon6	c.T780C	p.F260F	.	.	289	14	104	0	T|0.982;C|0.018	154
AGMAT	79814	bcgsc.ca	37	1	15904318	15904318	+	Silent	SNP	C	C	T	rs11544523	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGMAT	NM_024758	exon5	c.G762A	p.S254S	.	.	92	8	47	0	C|0.729;T|0.271	91
AGRN	375790	bcgsc.ca	37	1	957640	957640	+	Silent	SNP	C	C	T	rs6657048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGRN	NM_198576	exon2	c.C261T	p.D87D	.	.	113	8	52	0	C|0.965;T|0.035	136
AGT	183	bcgsc.ca	37	1	230846305	230846305	+	Missense_Mutation	SNP	C	C	T	rs11568032	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AGT	NM_000029	exon2	c.G292A	p.E98K	.	.	210	7	76	0	C|0.994;T|0.006	226
AHCTF1	25909	bcgsc.ca	37	1	247006051	247006051	+	Missense_Mutation	SNP	G	G	C	rs12410563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHCTF1	NM_015446	exon35	c.C6580G	p.L2194V	.	.	247	7	61	0	G|0.783;C|0.217	97
AHNAK2	113146	bcgsc.ca	37	14	105412864	105412864	+	Missense_Mutation	SNP	T	T	C	rs181553990		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.A8924G	p.D2975G	.	.	310	17	92	0	T|0.996;C|0.004	47
AHNAK2	113146	bcgsc.ca	37	14	105414559	105414559	+	Missense_Mutation	SNP	T	T	C	rs11845746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.A7229G	p.K2410R	.	.	249	7	75	0	T|0.967;C|0.033	47
AHNAK2	113146	bcgsc.ca	37	14	105414978	105414978	+	Silent	SNP	C	C	T	rs147478289		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.G6810A	p.V2270V	.	.	395	12	105	0	C|0.997;T|0.003	47
AHNAK2	113146	bcgsc.ca	37	14	105415164	105415164	+	Silent	SNP	G	G	A	rs114745830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.C6624T	p.A2208A	.	.	239	16	91	1	G|0.990;A|0.010	47
AHNAK2	113146	bcgsc.ca	37	14	105415469	105415469	+	Missense_Mutation	SNP	T	T	C	rs11846918	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.A6319G	p.M2107V	.	.	191	14	46	0	T|0.581;C|0.419	47
AHNAK2	113146	bcgsc.ca	37	14	105415899	105415899	+	Silent	SNP	A	A	G	rs11850869	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.T5889C	p.A1963A	.	.	275	14	81	0	A|0.965;G|0.035	47
AHNAK2	113146	bcgsc.ca	37	14	105417251	105417251	+	Missense_Mutation	SNP	C	C	G	rs113252411		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.G4537C	p.E1513Q	.	.	254	15	73	0	C|0.982;G|0.018	47
AHNAK2	113146	bcgsc.ca	37	14	105417286	105417286	+	Missense_Mutation	SNP	G	G	A	rs149840830		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.C4502T	p.P1501L	.	.	233	12	77	0	G|0.966;A|0.034	47
AHNAK2	113146	bcgsc.ca	37	14	105417503	105417503	+	Missense_Mutation	SNP	G	G	T	rs146582718		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.C4285A	p.P1429T	.	.	216	16	73	0	G|0.962;T|0.038	47
AHNAK2	113146	bcgsc.ca	37	14	105417894	105417894	+	Missense_Mutation	SNP	C	C	G	rs2819440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.G3894C	p.M1298I	.	.	162	21	50	0	C|0.249;G|0.751	47
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105410769	105410769	+	Silent	SNP	A	A	G	rs191005153	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.T11019C	p.S3673S	.	.	255	18	64	0	A|0.997;G|0.003	47
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105416296	105416296	+	Missense_Mutation	SNP	G	G	A	rs199536287		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK2	NM_138420	exon7	c.C5492T	p.P1831L	.	.	342	17	84	0	G|0.997;A|0.003	47
AHNAK	79026	bcgsc.ca	37	11	62285150	62285150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK	NM_001620	exon5	c.A16739G	p.D5580G	.	.	121	6	77	0	.	109
AHNAK	79026	bcgsc.ca	37	11	62292349	62292349	+	Silent	SNP	G	G	A	rs147436257	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK	NM_001620	exon5	c.C9540T	p.D3180D	.	.	224	11	76	0	G|0.987;A|0.013	109
AHNAK	79026	hgsc.bcm.edu;bcgsc.ca	37	11	62291087	62291087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AHNAK	NM_001620	exon5	c.A10802G	p.K3601R	.	.	220	9	75	0	.	109
AIFM1	9131	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129283520	129283520	+	Silent	SNP	A	A	G	rs1139851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	AIFM1,brain,glioma,-2	AIFM1	NM_004208	exon3	c.T273C	p.D91D	.	.	250	40	87	0	0|0.004;T|0.107	586
AIMP1	9255	bcgsc.ca	37	4	107246190	107246190	+	Silent	SNP	G	G	C	rs11544777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AIMP1	NM_001142416	exon2	c.G96C	p.L32L	.	.	773	22	247	0	G|0.962;C|0.038	227
AIRE	326	bcgsc.ca	37	21	45709906	45709906	+	Missense_Mutation	SNP	C	C	G	rs1800520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AIRE	NM_000383	exon7	c.C834G	p.S278R	.	.	130	9	41	0	C|0.804;G|0.196	91
AK8	158067	bcgsc.ca	37	9	135739131	135739131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AK8	NM_152572	exon4	c.T254C	p.L85P	.	.	127	5	57	0	.	90
AKAP12	9590	bcgsc.ca	37	6	151672285	151672285	+	Missense_Mutation	SNP	A	A	G	rs13212161	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP12	NM_005100	exon4	c.A2759G	p.E920G	.	.	75	4	43	0	A|0.908;G|0.092	293
AKAP13	11214	bcgsc.ca	37	15	86122529	86122529	+	Silent	SNP	G	G	A	rs139682746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP13	NM_007200	exon7	c.G1230A	p.K410K	.	.	107	6	63	0	G|0.996;A|0.004	258
AKAP13	11214	bcgsc.ca	37	15	86123364	86123364	+	Missense_Mutation	SNP	G	G	A	rs7177107	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP13	NM_007200	exon7	c.G2065A	p.E689K	.	.	155	6	59	0	G|0.875;A|0.125	258
AKAP13	11214	bcgsc.ca	37	15	86287867	86287867	+	Missense_Mutation	SNP	G	G	A	rs2614668	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP13	NM_006738	exon37	c.G8413A	p.A2805T	.	.	196	8	70	0	G|0.842;A|0.158	258
AKAP3	10566	bcgsc.ca	37	12	4735734	4735734	+	Silent	SNP	T	T	C	rs2072359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP3	NM_006422	exon4	c.A2334G	p.Q778Q	.	.	357	11	171	1	T|0.891;C|0.109	292
AKAP3	10566	bcgsc.ca	37	12	4735894	4735894	+	Missense_Mutation	SNP	G	G	A	rs2072357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP3	NM_006422	exon4	c.C2174T	p.S725L	.	.	185	8	103	0	G|0.880;A|0.120	292
AKAP3	10566	hgsc.bcm.edu;bcgsc.ca	37	12	4735801	4735801	+	Missense_Mutation	SNP	G	G	T	rs115289691	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP3	NM_006422	exon4	c.C2267A	p.T756K	.	.	336	16	167	0	G|0.993;T|0.007	292
AKAP4	8852	bcgsc.ca	37	X	49957346	49957346	+	Missense_Mutation	SNP	G	G	C	rs12012704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP4	NM_003886	exon5	c.C2018G	p.A673G	.	.	174	8	51	0	A|0.000;C|0.063;G|0.937	540
AKAP5	9495	bcgsc.ca	37	14	64936052	64936052	+	Missense_Mutation	SNP	G	G	A	rs34433837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP5	NM_004857	exon2	c.G940A	p.E314K	.	.	116	6	78	0	G|0.991;A|0.009	226
AKAP6	9472	bcgsc.ca	37	14	33014869	33014869	+	Missense_Mutation	SNP	C	C	T	rs3742926	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP6	NM_004274	exon4	c.C1010T	p.A337V	.	.	110	6	42	0	C|0.859;T|0.141	733
AKAP6	9472	bcgsc.ca	37	14	33293531	33293531	+	Missense_Mutation	SNP	T	T	A	rs4647899	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP6	NM_004274	exon13	c.T6512A	p.F2171Y	.	.	232	18	111	0	T|0.722;A|0.278	733
AKAP9	10142	bcgsc.ca	37	7	91667913	91667913	+	Missense_Mutation	SNP	G	G	C	rs34086871	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP9	NM_005751	exon17	c.G4519C	p.D1507H	.	.	410	9	187	0	G|0.662;C|0.338	755
AKAP9	10142	bcgsc.ca	37	7	91691601	91691601	+	Silent	SNP	C	C	T	rs10236397	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP9	NM_005751	exon24	c.C5778T	p.G1926G	.	.	284	15	140	0	C|0.605;T|0.395	755
AKAP9	10142	bcgsc.ca	37	7	91713972	91713972	+	Silent	SNP	C	C	T	rs10228334	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP9	NM_005751	exon34	c.C8665T	p.L2889L	.	.	523	28	202	2	C|0.593;T|0.407	755
AKAP9	10142	bcgsc.ca	37	7	91726927	91726927	+	Silent	SNP	A	A	C	rs1063243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKAP9	NM_005751	exon42	c.A10426C	p.R3476R	.	.	361	15	151	1	A|0.588;C|0.412	755
AKR1B15	441282	bcgsc.ca	37	7	134264286	134264286	+	Silent	SNP	C	C	T	rs6467538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR1B15	NM_001080538	exon12	c.C1020T	p.F340F	.	.	212	14	60	0	C|0.651;T|0.349	23
AKR1C2	1646	bcgsc.ca	37	10	5043821	5043821	+	Missense_Mutation	SNP	A	A	T	rs2854482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR1C2	NM_001354	exon4	c.T137A	p.F46Y	.	.	267	15	100	0	A|0.715;T|0.285	514
AKR1CL1	340811	bcgsc.ca	37	10	5197881	5197881	+	RNA	SNP	A	A	G	rs1781931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR1CL1	.	.	.	.	.	.	198	9	82	0	A|0.770;G|0.230	90
AKR1CL1	340811	bcgsc.ca	37	10	5199934	5199934	+	RNA	SNP	G	G	C	rs1781935	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR1CL1	.	.	.	.	.	.	146	6	51	0	G|0.400;C|0.600	90
AKR7A2	8574	bcgsc.ca	37	1	19630864	19630864	+	Missense_Mutation	SNP	G	G	A	rs2231206	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR7A2	NM_003689	exon7	c.C935T	p.A312V	.	.	142	11	79	0	G|0.983;A|0.017	90
AKR7A3	22977	bcgsc.ca	37	1	19612717	19612717	+	Missense_Mutation	SNP	C	C	T	rs138337504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR7A3	NM_012067	exon2	c.G364A	p.E122K	.	.	226	8	122	0	C|0.992;T|0.008	90
AKR7L	246181	ucsc.edu	37	1	19595825	19595825	+	RNA	SNP	G	G	A	rs200837266	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AKR7L	.	.	.	.	.	.	171	1	63	0	G|0.996;A|0.004	90
ALDH16A1	126133	bcgsc.ca	37	19	49967981	49967981	+	Silent	SNP	T	T	G	rs11558188	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALDH16A1	NM_153329	exon12	c.T1530G	p.V510V	.	.	79	5	34	0	T|0.692;G|0.308	91
ALDH16A1	126133	bcgsc.ca	37	19	49969085	49969085	+	Silent	SNP	C	C	T	rs10853810	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALDH16A1	NM_153329	exon13	c.C1659T	p.N553N	.	.	104	7	33	0	C|0.695;T|0.305	91
ALDH1L1	10840	bcgsc.ca	37	3	125855665	125855665	+	Missense_Mutation	SNP	T	T	G	rs9282691	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALDH1L1	NM_001270364	exon11	c.A1316C	p.E439A	.	.	95	6	35	0	T|0.935;G|0.065	156
ALDH1L1	10840	bcgsc.ca	37	3	125872384	125872384	+	Missense_Mutation	SNP	A	A	G	rs3796191	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALDH1L1	NM_001270364	exon7	c.T791C	p.L264P	.	.	149	6	63	0	A|0.945;G|0.055	156
ALDH3B2	222	bcgsc.ca	37	11	67434160	67434160	+	Missense_Mutation	SNP	C	C	T	rs76408306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALDH3B2	NM_001031615	exon4	c.G36A	p.M12I	.	.	77	6	27	0	C|0.986;T|0.014	226
ALDH4A1	8659	bcgsc.ca	37	1	19201956	19201956	+	Silent	SNP	A	A	G	rs2230708	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALDH4A1	NM_003748	exon13	c.T1380C	p.D460D	.	.	156	9	45	0	A|0.292;G|0.708	226
ALG13	79868	bcgsc.ca	37	X	110925428	110925428	+	Silent	SNP	C	C	T	rs147897682	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALG13	NM_001039210	exon2	c.C150T	p.P50P	.	.	108	6	48	0	C|0.998;T|0.002	130
ALG13	79868	bcgsc.ca	37	X	110963365	110963365	+	Silent	SNP	A	A	G	rs7063657	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALG13	NM_001099922	exon11	c.A1293G	p.P431P	.	.	190	13	99	0	A|0.900;0|0.010	130
ALG1L9P	285407	bcgsc.ca	37	11	71507261	71507261	+	RNA	SNP	A	A	G	rs111708284		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	71	7	34	0	A|0.832;G|0.168	.
ALG3	10195	bcgsc.ca	37	3	183963000	183963000	+	Silent	SNP	A	A	G	rs2233464	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_005787	exon4	c.T591C	p.G197G	.	.	138	10	60	0	A|0.962;G|0.038	.
ALG8	79053	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	77823732	77823732	+	Silent	SNP	A	A	G	rs61995924	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALG8	NM_024079	exon8	c.T862C	p.L288L	.	.	116	12	59	0	A|0.954;G|0.046	93
ALK	238	bcgsc.ca	37	2	29416357	29416357	+	Silent	SNP	G	G	A	rs1881422	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALK	NM_004304	exon29	c.C4596T	p.N1532N	.	.	642	23	308	0	G|0.977;A|0.023	3833
ALK	238	bcgsc.ca	37	2	29416366	29416366	+	Missense_Mutation	SNP	G	G	C	rs1881421	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALK	NM_004304	exon29	c.C4587G	p.D1529E	.	.	692	40	321	1	G|0.549;C|0.451	3833
ALK	238	bcgsc.ca	37	2	29416481	29416481	+	Missense_Mutation	SNP	T	T	C	rs1881420	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALK	NM_004304	exon29	c.A4472G	p.K1491R	.	.	539	25	231	1	T|0.564;G|0.083	3833
ALK	238	bcgsc.ca	37	2	29445458	29445458	+	Silent	SNP	G	G	T	rs3795850	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALK	NM_004304	exon21	c.C3375A	p.G1125G	.	.	105	6	33	0	G|0.706;T|0.294	3833
ALKBH8	91801	bcgsc.ca	37	11	107422535	107422535	+	Missense_Mutation	SNP	T	T	G	rs73553694	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALKBH8	NM_138775	exon6	c.A699C	p.Q233H	.	.	144	10	59	0	T|0.985;G|0.015	68
ALKBH8	91801	bcgsc.ca	37	11	107427616	107427616	+	Silent	SNP	C	C	G	rs17107135	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALKBH8	NM_138775	exon3	c.G243C	p.P81P	.	.	249	18	118	0	C|0.896;G|0.104	68
ALLC	55821	bcgsc.ca	37	2	3750061	3750061	+	Missense_Mutation	SNP	C	C	T	rs142516533		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALLC	NM_018436	exon12	c.C1084T	p.R362W	.	.	202	10	112	0	C|0.995;T|0.005	23
ALMS1	7840	bcgsc.ca	37	2	73678642	73678642	+	Missense_Mutation	SNP	C	C	T	rs188807564		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALMS1	NM_015120	exon8	c.C4985T	p.T1662I	.	.	163	8	65	0	C|0.998;T|0.002	142
ALMS1	7840	hgsc.bcm.edu;bcgsc.ca	37	2	73717635	73717635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALMS1	NM_015120	exon10	c.C8546T	p.P2849L	.	.	192	13	88	0	.	142
ALOX5AP	241	hgsc.bcm.edu;bcgsc.ca	37	13	31309784	31309784	+	Silent	SNP	C	C	T	rs11542984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALOX5AP	NM_001204406	exon2	c.C213T	p.I71I	.	.	106	5	35	0	C|0.995;T|0.005	226
ALOX5AP	241	ucsc.edu	37	13	31309703	31309703	+	Silent	SNP	T	T	C	rs78236471		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALOX5AP	NM_001204406	exon2	c.T132C	p.A44A	.	.	74	8	27	0	T|0.997;C|0.003	226
ALOXE3	59344	bcgsc.ca	37	17	8021608	8021608	+	Missense_Mutation	SNP	G	G	C	rs3027229	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALOXE3	NM_001165960	exon2	c.C97G	p.P33A	.	.	127	8	34	0	G|0.877;C|0.123	229
ALPK2	115701	bcgsc.ca	37	18	56202120	56202120	+	Missense_Mutation	SNP	G	G	A	rs7234999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALPK2	NM_052947	exon5	c.C5299T	p.H1767Y	.	.	690	19	172	0	G|0.907;A|0.093	765
ALPK2	115701	bcgsc.ca	37	18	56204644	56204644	+	Silent	SNP	T	T	G	rs12963422	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALPK2	NM_052947	exon5	c.A2775C	p.V925V	.	.	105	8	57	0	G|0.303;N|0.000	765
ALPK2	115701	bcgsc.ca	37	18	56204794	56204794	+	Silent	SNP	C	C	T	rs56390741	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALPK2	NM_052947	exon5	c.G2625A	p.T875T	.	.	184	8	105	0	C|0.980;T|0.020	765
ALPK2	115701	bcgsc.ca	37	18	56204926	56204926	+	Silent	SNP	C	C	T	rs55853669	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALPK2	NM_052947	exon5	c.G2493A	p.S831S	.	.	222	12	104	0	C|0.989;T|0.011	765
ALPPL2	251	bcgsc.ca	37	2	233274125	233274125	+	Missense_Mutation	SNP	G	G	C	rs145179673	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALPPL2	NM_031313	exon10	c.G1267C	p.G423R	.	.	295	17	125	0	G|0.995;C|0.005	91
ALS2	57679	bcgsc.ca	37	2	202626437	202626437	+	Missense_Mutation	SNP	T	T	C	rs3219154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALS2	NM_001135745	exon4	c.A280G	p.I94V	.	.	209	7	74	0	T|0.977;C|0.023	275
ALX4	60529	bcgsc.ca	37	11	44296946	44296946	+	Silent	SNP	C	C	T	rs11037928	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALX4	NM_021926	exon2	c.G729A	p.A243A	.	.	180	9	59	0	C|0.915;T|0.085	90
ALX4	60529	bcgsc.ca	37	11	44331509	44331509	+	Missense_Mutation	SNP	C	C	G	rs3824915	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ALX4	NM_021926	exon1	c.G104C	p.R35T	.	.	101	10	43	0	C|0.531;G|0.469	90
AMACR	23600	bcgsc.ca	37	5	33998773	33998773	+	Missense_Mutation	SNP	G	G	A	rs9282594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AMACR	NM_014324	exon4	c.C712T	p.P238S	.	.	231	8	76	0	G|0.974;A|0.026	90
AMDHD1	144193	hgsc.bcm.edu;bcgsc.ca	37	12	96354236	96354236	+	Missense_Mutation	SNP	G	G	T	rs143136011	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AMDHD1	NM_152435	exon5	c.G648T	p.K216N	.	.	248	11	118	0	G|0.987;T|0.013	90
AMDHD1	144193	hgsc.bcm.edu;bcgsc.ca	37	12	96360172	96360172	+	Missense_Mutation	SNP	C	C	A	rs17024904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AMDHD1	NM_152435	exon8	c.C1079A	p.P360H	.	.	158	10	59	0	C|0.977;A|0.023	90
AMER1	139285	ucsc.edu	37	X	63410110	63410110	+	Silent	SNP	T	T	C	rs61730681	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152424	exon2	c.A3057G	p.Q1019Q	.	.	52	5	25	0	T|0.757;C|0.243	.
AMER1	139285	ucsc.edu	37	X	63412690	63412690	+	Missense_Mutation	SNP	A	A	C	rs34677493	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152424	exon2	c.T477G	p.F159L	.	.	51	5	20	0	0|0.013;T|0.187	.
AMN1	196394	bcgsc.ca	37	12	31825294	31825294	+	Silent	SNP	A	A	G	rs115100488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001113402	exon7	c.T721C	p.L241L	.	.	190	6	72	0	A|0.991;G|0.009	.
AMOT	154796	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	112053138	112053138	+	Silent	SNP	C	C	T	rs57201849	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AMOT	NM_001113490	exon4	c.G1614A	p.S538S	.	.	136	15	41	0	C|0.980;T|0.020	131
AMOT	154796	ucsc.edu	37	X	112024157	112024157	+	Silent	SNP	G	G	T	rs2286063	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AMOT	NM_001113490	exon9	c.C2430A	p.I810I	.	.	104	9	24	0	G|0.899;T|0.101	131
AMZ1	155185	bcgsc.ca	37	7	2748758	2748758	+	Silent	SNP	G	G	C	rs59438885	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AMZ1	NM_133463	exon5	c.G651C	p.S217S	.	.	130	7	33	0	A|0.000;C|0.164;G|0.836	90
ANAPC5	51433	bcgsc.ca	37	12	121775195	121775195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANAPC5	NM_016237	exon6	c.G658T	p.A220S	.	.	97	6	50	0	.	290
ANGPT2	285	bcgsc.ca	37	8	6371291	6371291	+	Silent	SNP	A	A	G	rs2916747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANGPT2	NM_001147	exon7	c.T1107C	p.Y369Y	.	.	149	11	75	1	A|0.859;G|0.141	91
ANGPT2	285	bcgsc.ca	37	8	6378763	6378763	+	Silent	SNP	C	C	T	rs3020221	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANGPT2	NM_001118887	exon4	c.G735A	p.Q245Q	.	.	289	14	172	0	C|0.666;T|0.334	91
ANGPT2	285	bcgsc.ca	37	8	6389889	6389889	+	Silent	SNP	C	C	A	rs6559167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANGPT2	NM_001118887	exon2	c.G408T	p.A136A	.	.	279	15	115	0	A|0.252;C|0.515;G|0.233	91
ANGPTL1	9068	hgsc.bcm.edu;bcgsc.ca	37	1	178834201	178834201	+	Silent	SNP	G	G	A	rs77089478	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANGPTL1	NM_004673	exon3	c.C711T	p.N237N	.	.	112	10	38	0	G|0.996;A|0.004	90
ANGPTL2	23452	bcgsc.ca	37	9	129854199	129854199	+	Silent	SNP	G	G	A	rs2297866	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANGPTL2	NM_012098	exon4	c.C1032T	p.D344D	.	.	219	6	97	0	G|0.672;A|0.328	90
ANK1	286	bcgsc.ca	37	8	41551462	41551462	+	Silent	SNP	G	G	A	rs35964634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK1	NM_001142446	exon30	c.C3609T	p.S1203S	.	.	102	6	68	0	G|0.957;A|0.043	716
ANK1	286	bcgsc.ca	37	8	41574555	41574555	+	Silent	SNP	C	C	T	rs28533718	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK1	NM_001142446	exon13	c.G1419A	p.P473P	.	.	172	8	90	0	C|0.955;T|0.045	716
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	41573197	41573197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK1	NM_001142446	exon14	c.G1674T	p.K558N	.	.	53	26	28	0	.	716
ANK1	286	ucsc.edu;bcgsc.ca	37	8	41547748	41547748	+	Silent	SNP	G	G	A	rs7816734	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK1	NM_001142446	exon34	c.C4224T	p.A1408A	.	.	39	5	22	0	G|0.811;A|0.189	716
ANK2	287	bcgsc.ca	37	4	114278277	114278277	+	Missense_Mutation	SNP	C	C	T	rs3733617	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK2	NM_001148	exon38	c.C8503T	p.P2835S	.	.	244	15	89	0	C|0.831;T|0.169	583
ANK3	288	bcgsc.ca	37	10	61830256	61830256	+	Silent	SNP	T	T	C	rs61732400	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK3	NM_020987	exon37	c.A10383G	p.Q3461Q	.	.	212	8	90	0	T|0.970;C|0.030	107
ANK3	288	bcgsc.ca	37	10	61834876	61834876	+	Silent	SNP	T	T	C	rs115260634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK3	NM_020987	exon37	c.A5763G	p.T1921T	.	.	200	10	103	0	T|0.997;C|0.003	107
ANK3	288	bcgsc.ca	37	10	61898786	61898786	+	Silent	SNP	A	A	G	rs61732401	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANK3	NM_001204404	exon25	c.T2677C	p.L893L	.	.	227	6	84	0	A|0.998;G|0.002	107
ANKEF1	63926	ucsc.edu;bcgsc.ca	37	20	10030452	10030452	+	Missense_Mutation	SNP	G	G	A	rs524625	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_198798	exon6	c.G1235A	p.G412E	.	.	52	5	43	0	G|0.769;A|0.231	.
ANKEF1	63926	bcgsc.ca	37	20	10032413	10032413	+	Silent	SNP	T	T	G	rs683145	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_198798	exon7	c.T1746G	p.A582A	.	.	136	6	37	0	T|0.752;G|0.248	.
ANKFY1	51479	bcgsc.ca	37	17	4109722	4109722	+	Silent	SNP	G	G	A	rs3744671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKFY1	NM_001257999	exon7	c.C918T	p.L306L	.	.	206	6	55	0	G|0.903;A|0.097	93
ANKIB1	54467	bcgsc.ca	37	7	92027537	92027537	+	Silent	SNP	C	C	G	rs1861635	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKIB1	NM_019004	exon20	c.C2544G	p.S848S	.	.	185	8	66	0	C|0.845;G|0.155	432
ANKRD12	23253	bcgsc.ca	37	18	9255718	9255718	+	Missense_Mutation	SNP	G	G	A	rs2298546	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD12	NM_015208	exon9	c.G2453A	p.S818N	.	.	204	9	132	0	G|0.945;A|0.055	92
ANKRD13A	88455	bcgsc.ca	37	12	110456175	110456175	+	Silent	SNP	A	A	G	rs2302689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD13A	NM_033121	exon5	c.A426G	p.P142P	.	.	403	22	124	0	A|0.706;G|0.294	90
ANKRD13B	124930	bcgsc.ca	37	17	27937771	27937771	+	Silent	SNP	G	G	A	rs35244918	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD13B	NM_152345	exon8	c.G891A	p.K297K	.	.	177	7	60	0	G|0.995;A|0.005	90
ANKRD18A	253650	bcgsc.ca	37	9	38575602	38575602	+	Missense_Mutation	SNP	T	T	G	rs12341435	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD18A	NM_147195	exon15	c.A2835C	p.E945D	.	.	190	12	81	0	T|0.961;G|0.039	92
ANKRD18A	253650	bcgsc.ca	37	9	38588602	38588602	+	Missense_Mutation	SNP	T	T	C	rs2799163	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD18A	NM_147195	exon11	c.A2063G	p.Y688C	.	.	707	15	276	0	T|0.588;C|0.412	92
ANKRD18A	253650	bcgsc.ca	37	9	38595886	38595886	+	Missense_Mutation	SNP	T	T	C	rs2996347	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD18A	NM_147195	exon9	c.A1451G	p.N484S	.	.	243	12	109	0	T|0.680;C|0.320	92
ANKRD18B	441459	bcgsc.ca	37	9	33548096	33548096	+	Missense_Mutation	SNP	A	A	T	rs112281766	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001244752	exon9	c.A1121T	p.N374I	.	.	331	15	186	0	A|0.980;T|0.020	.
ANKRD18B	441459	bcgsc.ca	37	9	33567151	33567151	+	Silent	SNP	G	G	A	rs141182994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001244752	exon14	c.G2604A	p.T868T	.	.	244	9	134	0	G|0.973;A|0.027	.
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca	37	9	33550538	33550538	+	Silent	SNP	A	A	G	rs114003632	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001244752	exon10	c.A1989G	p.T663T	.	.	342	15	154	0	A|0.982;G|0.018	.
ANKRD20A5P	440482	bcgsc.ca	37	18	14179488	14179488	+	RNA	SNP	C	C	G	rs111671782	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD20A5P	.	.	.	.	.	.	177	7	60	0	C|0.958;G|0.042	90
ANKRD26	22852	bcgsc.ca	37	10	27303605	27303605	+	Missense_Mutation	SNP	A	A	T	rs2274741	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD26	NM_014915	exon31	c.T4542A	p.F1514L	.	.	386	19	158	0	A|0.713;T|0.287	138
ANKRD26	22852	bcgsc.ca	37	10	27317840	27317840	+	Missense_Mutation	SNP	C	C	T	rs10829163	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD26	NM_014915	exon27	c.G3913A	p.V1305I	.	.	718	29	282	0	C|0.724;T|0.276	138
ANKRD26	22852	bcgsc.ca	37	10	27381349	27381349	+	Silent	SNP	T	T	C	rs2297145	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD26	NM_014915	exon4	c.A624G	p.V208V	.	.	240	11	93	0	T|0.691;C|0.309	138
ANKRD27	84079	bcgsc.ca	37	19	33106600	33106600	+	Silent	SNP	C	C	T	rs78841410	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD27	NM_032139	exon22	c.G2139A	p.P713P	.	.	162	6	51	1	C|0.981;T|0.019	95
ANKRD30A	91074	bcgsc.ca	37	10	37436367	37436367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD30A	NM_052997	exon9	c.A1357G	p.I453V	.	.	562	13	249	0	.	161
ANKRD30A	91074	bcgsc.ca	37	10	37451768	37451768	+	Missense_Mutation	SNP	T	T	G	rs41276130	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD30A	NM_052997	exon17	c.T1826G	p.L609W	.	.	436	19	213	0	T|0.930;G|0.070	161
ANKRD30B	374860	bcgsc.ca	37	18	14779969	14779969	+	Missense_Mutation	SNP	C	C	G	rs9675365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD30B	NM_001145029	exon11	c.C1431G	p.F477L	.	.	271	9	111	0	C|0.546;G|0.454	24
ANKRD30B	374860	bcgsc.ca	37	18	14848821	14848821	+	Silent	SNP	G	G	A	rs71323607		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD30B	NM_001145029	exon34	c.G2931A	p.T977T	.	.	649	47	334	0	G|0.500;A|0.500	24
ANKRD30B	374860	bcgsc.ca	37	18	14850375	14850375	+	Silent	SNP	G	G	A	rs66708488	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD30B	NM_001145029	exon35	c.G3201A	p.L1067L	.	.	371	20	249	1	G|0.167;A|0.833	24
ANKRD30BL	554226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	132912246	132912246	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	829	252	403	0	.	.
ANKRD33	341405	bcgsc.ca	37	12	52282060	52282060	+	Silent	SNP	C	C	T	rs697634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD33	NM_182608	exon1	c.C90T	p.R30R	.	.	215	10	58	0	C|0.719;T|0.281	90
ANKRD35	148741	ucsc.edu;bcgsc.ca	37	1	145561594	145561594	+	Missense_Mutation	SNP	C	C	T	rs6670984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD35	NM_144698	exon10	c.C1282T	p.P428S	.	.	137	16	67	0	C|0.526;T|0.474	95
ANKRD36	375248	bcgsc.ca	37	2	97881267	97881267	+	Missense_Mutation	SNP	G	G	A	rs6756986	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001164315	exon62	c.G3706A	p.D1236N	.	.	381	17	192	0	G|0.810;A|0.190	.
ANKRD36BP2	645784	bcgsc.ca	37	2	89103904	89103904	+	RNA	SNP	C	C	T	rs74263329		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	1239	85	396	1	.	.
ANKRD44	91526	bcgsc.ca	37	2	197946392	197946392	+	Silent	SNP	C	C	T	rs35272229	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD44	NM_001195144	exon15	c.G1515A	p.E505E	.	.	307	12	103	0	C|0.957;T|0.043	230
ANKRD44	91526	ucsc.edu;bcgsc.ca	37	2	198001319	198001319	+	Silent	SNP	A	A	G	rs3731569	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD44	NM_153697	exon4	c.T258C	p.S86S	.	.	99	13	45	0	A|0.672;G|0.328	230
ANKRD45	339416	bcgsc.ca	37	1	173596257	173596257	+	Missense_Mutation	SNP	A	A	T	rs12059066	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD45	NM_198493	exon4	c.T538A	p.L180I	.	.	149	8	41	0	A|0.814;T|0.186	90
ANKRD53	79998	bcgsc.ca	37	2	71211815	71211815	+	Silent	SNP	G	G	A	rs3796098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD53	NM_001115116	exon6	c.G978A	p.L326L	.	.	130	10	43	0	G|0.837;A|0.163	90
ANKRD53	79998	bcgsc.ca	37	2	71211989	71211989	+	Silent	SNP	A	A	G	rs3796099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD53	NM_001115116	exon6	c.A1152G	p.T384T	.	.	110	8	35	0	A|0.366;C|0.000;G|0.634	90
ANKRD53	79998	hgsc.bcm.edu;bcgsc.ca	37	2	71206977	71206977	+	Missense_Mutation	SNP	G	G	A	rs149813455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKRD53	NM_001115116	exon3	c.G604A	p.A202T	.	.	124	7	51	0	G|0.999;A|0.001	90
ANKRD65	441869	bcgsc.ca	37	1	1354515	1354515	+	Missense_Mutation	SNP	C	C	G	rs904589		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145210	exon4	c.G1165C	p.E389Q	.	.	187	9	49	0	C|0.285;G|0.715	.
ANKRD65	441869	bcgsc.ca	37	1	1354594	1354594	+	Silent	SNP	A	A	G	rs3766165	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145210	exon4	c.T1086C	p.T362T	.	.	104	10	52	0	T|0.779;G|0.000	.
ANKS3	124401	bcgsc.ca	37	16	4764117	4764117	+	Missense_Mutation	SNP	A	A	C	rs78384770	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKS3	NM_133450	exon7	c.T644G	p.M215R	.	.	172	13	48	0	A|0.976;C|0.024	90
ANKZF1	55139	bcgsc.ca	37	2	220097257	220097257	+	Missense_Mutation	SNP	G	G	C	rs61747682	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANKZF1	NM_001042410	exon5	c.G410C	p.S137T	.	.	99	9	33	0	G|0.960;C|0.040	92
ANO10	55129	hgsc.bcm.edu;bcgsc.ca	37	3	43602810	43602810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANO10	NM_018075	exon9	c.G1378A	p.G460S	.	.	307	14	136	0	.	92
ANO2	57101	bcgsc.ca	37	12	5841733	5841733	+	Missense_Mutation	SNP	A	A	C	rs1860961	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANO2	NM_020373	exon15	c.T1498G	p.S500A	.	.	189	8	88	0	A|0.870;C|0.130	139
ANO4	121601	bcgsc.ca	37	12	101295602	101295602	+	Silent	SNP	C	C	G	rs34182255	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANO4	NM_178826	exon2	c.C39G	p.T13T	.	.	245	15	88	0	C|0.876;G|0.124	96
ANO4	121601	bcgsc.ca	37	12	101520689	101520689	+	Silent	SNP	A	A	G	rs1055734	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANO4	NM_178826	exon26	c.A2604G	p.S868S	.	.	277	14	137	0	A|0.861;G|0.139	96
ANO8	57719	bcgsc.ca	37	19	17435884	17435884	+	Silent	SNP	T	T	C	rs755123	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANO8	NM_020959	exon17	c.A2973G	p.S991S	.	.	198	13	126	0	T|0.301;C|0.699	93
ANO9	338440	bcgsc.ca	37	11	433357	433357	+	Missense_Mutation	SNP	G	G	T	rs79329594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANO9	NM_001012302	exon4	c.C307A	p.H103N	.	.	127	8	63	0	C|0.000;G|0.987;T|0.013	227
ANXA10	11199	bcgsc.ca	37	4	169083694	169083694	+	Missense_Mutation	SNP	A	A	C	rs6836994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANXA10	NM_007193	exon4	c.A211C	p.M71L	.	.	266	7	83	0	A|0.419;C|0.580	90
ANXA10	11199	bcgsc.ca	37	4	169086441	169086441	+	Silent	SNP	A	A	G	rs4405979	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANXA10	NM_007193	exon6	c.A444G	p.S148S	.	.	306	11	121	0	A|0.421;G|0.579	90
ANXA10	11199	bcgsc.ca	37	4	169098914	169098914	+	Silent	SNP	A	A	G	rs477897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANXA10	NM_007193	exon7	c.A504G	p.T168T	.	.	213	7	80	0	A|0.841;G|0.159	90
ANXA2P2	304	bcgsc.ca	37	9	33624557	33624557	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	412	10	162	0	.	.
ANXA2R	389289	bcgsc.ca	37	5	43039793	43039793	+	Missense_Mutation	SNP	T	T	C	rs1054428	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001014279	exon1	c.A356G	p.Q119R	.	.	184	13	39	0	T|0.756;C|0.244	.
ANXA7	310	bcgsc.ca	37	10	75148116	75148116	+	Silent	SNP	A	A	G	rs2234965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ANXA7	NM_004034	exon7	c.T558C	p.D186D	.	.	172	5	69	0	A|0.871;G|0.129	516
AOC3	8639	bcgsc.ca	37	17	41004503	41004503	+	Silent	SNP	G	G	A	rs33916389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AOC3	NM_003734	exon1	c.G1143A	p.T381T	.	.	218	9	64	0	G|0.954;A|0.046	516
AP1B1	162	bcgsc.ca	37	22	29755888	29755888	+	Silent	SNP	T	T	C	rs2072051	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AP1B1	NM_001127	exon4	c.A204G	p.L68L	.	.	176	8	34	0	T|0.337;C|0.663	92
AP1M1	8907	bcgsc.ca	37	19	16345028	16345028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AP1M1	NM_001130524	exon12	c.A1228G	p.I410V	.	.	69	4	33	0	.	156
AP4B1	10717	bcgsc.ca	37	1	114438951	114438951	+	Missense_Mutation	SNP	A	A	G	rs1217401	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AP4B1	NM_006594	exon9	c.T1439C	p.L480S	.	.	146	11	88	0	A|0.589;G|0.411	93
AP4E1	23431	bcgsc.ca	37	15	51293258	51293258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AP4E1	NM_007347	exon20	c.T3131C	p.L1044P	.	.	86	4	53	0	.	90
AP5M1	55745	bcgsc.ca	37	14	57741550	57741550	+	Silent	SNP	A	A	G	rs1189899	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018229	exon2	c.A663G	p.Q221Q	.	.	158	10	100	0	A|0.764;G|0.236	.
AP5M1	55745	bcgsc.ca	37	14	57749700	57749700	+	Missense_Mutation	SNP	A	A	C	rs10140245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018229	exon5	c.A1137C	p.E379D	.	.	570	16	267	0	A|0.950;C|0.050	.
APBB2	323	bcgsc.ca	37	4	41015736	41015736	+	Silent	SNP	C	C	T	rs114495250	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APBB2	NM_173075	exon6	c.G699A	p.K233K	.	.	657	20	217	0	C|0.995;T|0.005	92
APBB2	323	bcgsc.ca	37	4	41015742	41015742	+	Silent	SNP	T	T	C	rs11942640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APBB2	NM_173075	exon6	c.A693G	p.E231E	.	.	678	22	213	0	T|0.953;C|0.047	92
APBB2	323	hgsc.bcm.edu;bcgsc.ca	37	4	41016204	41016204	+	Silent	SNP	C	C	T	rs116718314	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APBB2	NM_173075	exon6	c.G231A	p.A77A	.	.	598	29	194	0	C|0.995;T|0.005	92
APC	324	hgsc.bcm.edu;bcgsc.ca	37	5	112175242	112175242	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	APC,bladder,carcinoma,+2	APC	NM_001127510	exon17	c.A3951G	p.E1317E	.	.	225	13	107	1	.	12026
APCDD1	147495	bcgsc.ca	37	18	10487918	10487918	+	Silent	SNP	C	C	T	rs3185480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APCDD1	NM_153000	exon5	c.C1428T	p.L476L	.	.	139	8	39	0	C|0.612;T|0.388	90
APIP	51074	bcgsc.ca	37	11	34910397	34910397	+	Missense_Mutation	SNP	C	C	T	rs1977420	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APIP	NM_015957	exon4	c.G227A	p.C76Y	.	.	94	5	70	0	C|0.611;T|0.389	226
APLF	200558	bcgsc.ca	37	2	68729992	68729992	+	Missense_Mutation	SNP	A	A	G	rs11902811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APLF	NM_173545	exon3	c.A298G	p.I100V	.	.	386	9	105	0	A|0.831;G|0.169	92
APLF	200558	bcgsc.ca	37	2	68753240	68753240	+	Missense_Mutation	SNP	T	T	A	rs35002937	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APLF	NM_173545	exon6	c.T670A	p.S224T	.	.	347	14	233	0	T|0.755;A|0.245	92
APLP1	333	bcgsc.ca	37	19	36363470	36363470	+	Silent	SNP	G	G	A	rs230261	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APLP1	NM_005166	exon7	c.G936A	p.R312R	.	.	168	8	74	0	G|0.943;A|0.057	92
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	116693459	116693459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOA4	NM_000482	exon2	c.T92C	p.M31T	.	.	115	36	40	0	.	22
APOB	338	bcgsc.ca	37	2	21225485	21225485	+	Missense_Mutation	SNP	C	C	G	rs1801702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOB	NM_000384	exon29	c.G12809C	p.R4270T	.	.	234	7	112	0	C|0.730;G|0.270	175
APOB	338	bcgsc.ca	37	2	21260934	21260934	+	Missense_Mutation	SNP	G	G	A	rs6752026	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOB	NM_000384	exon5	c.C433T	p.P145S	.	.	225	6	86	0	G|0.966;A|0.034	175
APOBEC1	339	bcgsc.ca	37	12	7805236	7805236	+	Missense_Mutation	SNP	C	C	G	rs2302515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOBEC1	NM_001644	exon3	c.G240C	p.M80I	.	.	110	5	50	0	C|0.248;G|0.752	226
APOBEC3H	164668	bcgsc.ca	37	22	39497404	39497404	+	Missense_Mutation	SNP	G	G	C	rs139297	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOBEC3H	NM_001166003	exon3	c.G313C	p.G105R	.	.	119	15	30	0	G|0.456;C|0.544	91
APOBEC4	403314	bcgsc.ca	37	1	183616884	183616884	+	Missense_Mutation	SNP	C	C	T	rs10911390	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOBEC4	NM_203454	exon2	c.G1033A	p.V345M	.	.	321	18	120	0	C|0.929;T|0.071	90
APOBEC4	403314	bcgsc.ca	37	1	183617094	183617094	+	Missense_Mutation	SNP	G	G	A	rs10911391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOBEC4	NM_203454	exon2	c.C823T	p.P275S	.	.	578	17	362	0	G|0.933;A|0.067	90
APOBEC4	403314	bcgsc.ca	37	1	183617311	183617311	+	Silent	SNP	T	T	A	rs10911392	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOBEC4	NM_203454	exon2	c.A606T	p.I202I	.	.	163	7	114	0	T|0.917;A|0.083	90
APOBEC4	403314	bcgsc.ca	37	1	183617693	183617693	+	Missense_Mutation	SNP	G	G	A	rs16861394	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOBEC4	NM_203454	exon2	c.C224T	p.S75F	.	.	377	9	195	0	G|0.928;A|0.072	90
APOD	347	bcgsc.ca	37	3	195295990	195295990	+	Silent	SNP	C	C	G	rs140035450		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOD	NM_001647	exon5	c.G351C	p.P117P	.	.	169	6	63	0	C|1.000;G|0.000	516
APOF	319	bcgsc.ca	37	12	56755058	56755058	+	Missense_Mutation	SNP	A	A	G	rs4301822	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001638	exon2	c.T932C	p.I311T	.	.	196	11	47	0	A|0.818;G|0.182	.
APOF	319	bcgsc.ca	37	12	56755120	56755120	+	Silent	SNP	T	T	C	rs11575218	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001638	exon2	c.A870G	p.T290T	.	.	214	12	48	0	T|0.932;C|0.068	.
APOL1	8542	bcgsc.ca	37	22	36661409	36661409	+	Missense_Mutation	SNP	A	A	G	rs116136671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL1	NM_145343	exon7	c.A575G	p.N192S	.	.	140	6	77	0	A|0.982;G|0.018	221
APOL4	80832	bcgsc.ca	37	22	36587486	36587486	+	Silent	SNP	A	A	G	rs2227167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL4	.	.	.	.	.	.	152	9	56	0	A|0.381;G|0.619	90
APOL4	80832	bcgsc.ca	37	22	36587704	36587704	+	Missense_Mutation	SNP	T	T	C	rs132700	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL4	.	.	.	.	.	.	184	8	60	0	T|0.701;C|0.299	90
APOL4	80832	bcgsc.ca	37	22	36591380	36591380	+	Silent	SNP	A	A	G	rs2007468	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL4	.	.	.	.	.	.	179	15	62	0	A|0.324;G|0.676	90
APOL4	80832	bcgsc.ca	37	22	36591475	36591475	+	Missense_Mutation	SNP	G	G	A	rs77639244		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL4	.	.	.	.	.	.	216	9	48	0	G|0.971;A|0.029	90
APOL4	80832	ucsc.edu;bcgsc.ca	37	22	36598049	36598049	+	Missense_Mutation	SNP	C	C	G	rs80587	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL4	.	.	.	.	.	.	165	18	50	0	C|0.411;G|0.589	90
APOL4	80832	ucsc.edu;bcgsc.ca	37	22	36598058	36598058	+	Missense_Mutation	SNP	T	T	C	rs71296614	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APOL4	.	.	.	.	.	.	187	20	57	0	CGACAAAGAT|0.500;GGACAAAGAC|0.500	90
APPBP2	10513	bcgsc.ca	37	17	58525018	58525018	+	Missense_Mutation	SNP	C	C	T	rs34146848	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APPBP2	NM_006380	exon13	c.G1682A	p.S561N	.	.	164	8	52	0	C|0.873;T|0.127	226
APPL1	26060	hgsc.bcm.edu;bcgsc.ca	37	3	57291288	57291288	+	Missense_Mutation	SNP	C	C	T	rs35776173	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APPL1	NM_012096	exon15	c.C1262T	p.P421L	.	.	249	15	92	0	C|0.996;T|0.004	153
APTX	54840	hgsc.bcm.edu;bcgsc.ca	37	9	32987707	32987707	+	Silent	SNP	G	G	A	rs79254654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	APTX	NM_001195248	exon4	c.C360T	p.N120N	.	.	249	13	74	0	G|0.991;A|0.009	91
AQP10	89872	bcgsc.ca	37	1	154295592	154295592	+	Missense_Mutation	SNP	C	C	T	rs6685323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AQP10	NM_080429	exon3	c.C367T	p.H123Y	.	.	283	23	95	0	C|0.704;T|0.296	90
AQP3	360	bcgsc.ca	37	9	33442952	33442952	+	Silent	SNP	G	G	A	rs2228332	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AQP3	NM_004925	exon4	c.C390T	p.F130F	.	.	155	12	84	0	G|0.344;N|0.000	90
AQP9	366	hgsc.bcm.edu;bcgsc.ca	37	15	58467196	58467196	+	Silent	SNP	A	A	T	rs140188159	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AQP9	NM_020980	exon4	c.A456T	p.P152P	.	.	204	11	88	0	A|0.998;T|0.002	91
AQPEP	0	bcgsc.ca	37	5	115336880	115336880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173800	exon10	c.G1764A	p.M588I	.	.	282	9	127	1	.	.
AQPEP	0	bcgsc.ca;mdanderson.org	37	5	115358137	115358137	+	Missense_Mutation	SNP	G	G	A	rs17138681	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173800	exon19	c.G2806A	p.V936I	.	.	399	35	140	0	G|0.969;A|0.031	.
AQR	9716	bcgsc.ca	37	15	35149048	35149048	+	Missense_Mutation	SNP	G	G	A	rs61741130	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AQR	NM_014691	exon35	c.C4403T	p.P1468L	.	.	265	8	111	0	G|0.928;A|0.072	135
AQR	9716	bcgsc.ca	37	15	35189858	35189858	+	Silent	SNP	C	C	T	rs34867839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AQR	NM_014691	exon21	c.G2292A	p.A764A	.	.	464	15	146	0	C|0.967;T|0.033	135
ARAP2	116984	bcgsc.ca	37	4	36134879	36134879	+	Silent	SNP	C	C	A	rs73809106	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARAP2	NM_015230	exon20	c.G3396T	p.V1132V	.	.	372	13	131	0	C|0.995;A|0.005	93
ARAP2	116984	bcgsc.ca	37	4	36160386	36160386	+	Silent	SNP	A	A	G	rs16991958	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARAP2	NM_015230	exon15	c.T2718C	p.A906A	.	.	378	12	168	0	A|0.948;G|0.052	93
ARAP3	64411	bcgsc.ca	37	5	141051236	141051236	+	Silent	SNP	C	C	T	rs12514851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARAP3	NM_022481	exon12	c.G1755A	p.A585A	.	.	147	8	37	0	C|0.849;T|0.151	291
ARAP3	64411	bcgsc.ca	37	5	141059868	141059868	+	Silent	SNP	T	T	C	rs11167756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARAP3	NM_022481	exon2	c.A186G	p.L62L	.	.	216	17	89	0	T|0.567;C|0.433	291
ARAP3	64411	hgsc.bcm.edu;bcgsc.ca	37	5	141033823	141033823	+	Missense_Mutation	SNP	C	C	A	rs61746868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARAP3	NM_022481	exon33	c.G4329T	p.K1443N	.	.	309	14	66	0	C|0.984;A|0.016	291
ARAP3	64411	ucsc.edu;bcgsc.ca	37	5	141036337	141036337	+	Silent	SNP	A	A	G	rs7703648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARAP3	NM_022481	exon26	c.T3603C	p.A1201A	.	.	101	11	41	0	A|0.497;G|0.503	291
ARF1	375	bcgsc.ca	37	1	228285645	228285645	+	Silent	SNP	C	C	T	rs61737797	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARF1	NM_001024228	exon5	c.C477T	p.C159C	.	.	148	9	72	0	C|0.996;T|0.004	227
ARFGAP3	26286	bcgsc.ca;mdanderson.org	37	22	43206950	43206950	+	Missense_Mutation	SNP	A	A	C	rs1018448	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARFGAP3	NM_014570	exon12	c.T1065G	p.S355R	.	.	146	20	46	0	A|0.326;C|0.674	153
ARFIP1	27236	bcgsc.ca	37	4	153809342	153809342	+	Silent	SNP	C	C	T	rs76726136	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARFIP1	NM_001025595	exon8	c.C849T	p.D283D	.	.	299	15	100	0	C|0.984;T|0.016	91
ARGFXP2	503640	ucsc.edu	37	17	30477893	30477893	+	RNA	SNP	A	A	G	rs73284185	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	95	10	38	0	A|0.957;G|0.043	.
ARHGAP11A	9824	hgsc.bcm.edu;bcgsc.ca	37	15	32921843	32921843	+	Missense_Mutation	SNP	A	A	G	rs74011135	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP11A	NM_199357	exon8	c.A985G	p.T329A	.	.	437	20	138	0	A|0.993;G|0.007	292
ARHGAP1	392	bcgsc.ca	37	11	46701765	46701765	+	Silent	SNP	C	C	T	rs61752936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP1	NM_004308	exon10	c.G888A	p.K296K	.	.	131	10	55	0	C|0.956;T|0.044	227
ARHGAP17	55114	bcgsc.ca	37	16	24942328	24942328	+	Silent	SNP	C	C	T	rs79337633	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP17	NM_001006634	exon19	c.G2292A	p.P764P	.	.	174	6	74	0	C|0.983;T|0.017	227
ARHGAP17	55114	bcgsc.ca	37	16	24953389	24953389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP17	NM_001006634	exon16	c.A1409G	p.N470S	.	.	89	4	41	0	.	227
ARHGAP17	55114	bcgsc.ca	37	16	24980078	24980078	+	Silent	SNP	C	C	T	rs75957421	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP17	NM_001006634	exon5	c.G288A	p.T96T	.	.	125	6	31	0	C|0.976;T|0.024	227
ARHGAP21	57584	bcgsc.ca	37	10	24908529	24908529	+	Silent	SNP	G	G	A	rs116419398	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP21	NM_020824	exon9	c.C2295T	p.T765T	.	.	303	9	119	2	G|0.994;A|0.006	235
ARHGAP26	23092	bcgsc.ca	37	5	142254679	142254679	+	Silent	SNP	A	A	G	rs185200	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP26	NM_015071	exon3	c.A255G	p.R85R	.	.	110	9	33	0	A|0.466;G|0.534	660
ARHGAP30	257106	bcgsc.ca	37	1	161018422	161018422	+	Missense_Mutation	SNP	C	C	G	rs61733353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP30	NM_001025598	exon12	c.G2389C	p.D797H	.	.	324	15	112	0	C|0.985;G|0.015	25
ARHGAP42	143872	bcgsc.ca	37	11	100792335	100792335	+	Silent	SNP	G	G	A	rs75746929	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152432	exon6	c.G597A	p.P199P	.	.	109	5	84	0	G|0.910;A|0.090	.
ARHGAP44	9912	bcgsc.ca	37	17	12859289	12859289	+	Silent	SNP	A	A	G	rs16946898	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGAP44	NM_014859	exon14	c.A1242G	p.Q414Q	.	.	208	16	63	0	A|0.984;G|0.016	90
ARHGEF18	23370	bcgsc.ca	37	19	7504957	7504957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF18	NM_001130955	exon1	c.C131G	p.A44G	.	.	70	5	49	0	.	228
ARHGEF18	23370	ucsc.edu	37	19	7524846	7524846	+	Silent	SNP	C	C	T	rs2287914	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF18	NM_001130955	exon10	c.C1854T	p.V618V	.	.	75	8	24	0	C|0.797;T|0.203	228
ARHGEF1	9138	bcgsc.ca	37	19	42392310	42392310	+	Silent	SNP	C	C	T	rs2288509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF1	NM_199002	exon3	c.C117T	p.I39I	.	.	80	5	27	0	C|0.782;T|0.218	293
ARHGEF25	115557	bcgsc.ca	37	12	58009799	58009799	+	Silent	SNP	C	C	T	rs114895142	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF25	NM_001111270	exon14	c.C1536T	p.N512N	.	.	95	5	31	0	C|0.986;T|0.014	653
ARHGEF3	50650	bcgsc.ca	37	3	56779443	56779443	+	Silent	SNP	G	G	A	rs34185780	bycluster;byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF3	NM_001128615	exon10	c.C756T	p.A252A	.	.	238	9	109	0	G|0.998;A|0.002	228
ARHGEF37	389337	bcgsc.ca	37	5	149006640	149006640	+	Missense_Mutation	SNP	C	C	T	rs9324624	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF37	NM_001001669	exon11	c.C1466T	p.P489L	.	.	154	10	43	0	C|0.590;T|0.410	90
ARHGEF40	55701	bcgsc.ca	37	14	21553004	21553004	+	Silent	SNP	C	C	T	rs749731	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF40	NM_018071	exon18	c.C3882T	p.F1294F	.	.	258	8	92	0	C|0.932;T|0.068	228
ARHGEF40	55701	bcgsc.ca	37	14	21553057	21553057	+	Missense_Mutation	SNP	T	T	C	rs943992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF40	NM_018071	exon18	c.T3935C	p.M1312T	.	.	301	11	115	0	T|0.922;C|0.078	228
ARHGEF4	50649	bcgsc.ca	37	2	131802045	131802045	+	Silent	SNP	C	C	T	rs10928515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARHGEF4	NM_032995	exon12	c.C1773T	p.P591P	.	.	92	6	36	0	A|0.000;C|0.838;G|0.000;T|0.161	292
ARID3C	138715	bcgsc.ca	37	9	34622463	34622463	+	Missense_Mutation	SNP	C	C	T	rs12337871	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARID3C	NM_001017363	exon5	c.G929A	p.R310Q	.	.	113	6	29	0	C|0.928;T|0.072	91
ARID4B	51742	bcgsc.ca	37	1	235357460	235357460	+	Silent	SNP	A	A	G	rs62000435	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARID4B	NM_016374	exon19	c.T1993C	p.L665L	.	.	646	20	267	0	A|0.992;G|0.008	228
ARL14	80117	bcgsc.ca	37	3	160395483	160395483	+	Missense_Mutation	SNP	C	C	A	rs35633732	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARL14	NM_025047	exon1	c.C349A	p.P117T	.	.	116	7	64	0	C|0.942;A|0.058	90
ARMC3	219681	bcgsc.ca	37	10	23290952	23290952	+	Silent	SNP	C	C	T	rs12259839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARMC3	NM_173081	exon12	c.C1530T	p.D510D	.	.	257	11	94	0	C|0.920;T|0.080	90
ARMC5	79798	bcgsc.ca	37	16	31476458	31476458	+	Missense_Mutation	SNP	C	C	T	rs11150624	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARMC5	NM_024742	exon4	c.C2114T	p.A705V	.	.	115	7	36	0	C|0.636;T|0.364	24
ARNTL2	56938	bcgsc.ca	37	12	27553566	27553566	+	Missense_Mutation	SNP	A	A	G	rs1037921	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARNTL2	NM_020183	exon10	c.A1019G	p.N340S	.	.	161	8	93	0	A|0.963;G|0.037	92
ARSF	416	hgsc.bcm.edu;bcgsc.ca	37	X	3019246	3019246	+	Missense_Mutation	SNP	G	G	T	rs140413167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARSF	NM_004042	exon8	c.G1086T	p.W362C	.	.	173	8	70	0	G|0.999;T|0.001	132
ARSG	22901	bcgsc.ca	37	17	66364749	66364749	+	Silent	SNP	T	T	C	rs1558877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARSG	NM_001267727	exon7	c.T765C	p.P255P	.	.	137	11	31	0	T|0.481;C|0.519	91
ARSG	22901	bcgsc.ca	37	17	66364804	66364804	+	Missense_Mutation	SNP	T	T	C	rs1558878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARSG	NM_001267727	exon7	c.T820C	p.W274R	.	.	141	5	48	0	T|0.602;C|0.398	91
ARSH	347527	bcgsc.ca	37	X	2933057	2933057	+	Silent	SNP	T	T	C	rs143359225	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARSH	NM_001011719	exon4	c.T387C	p.C129C	.	.	225	13	56	0	T|0.952;C|0.048	130
ARSH	347527	bcgsc.ca	37	X	2933311	2933311	+	Missense_Mutation	SNP	G	G	A	rs61995728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARSH	NM_001011719	exon4	c.G641A	p.S214N	.	.	401	23	131	1	G|0.952;A|0.048	130
ARSH	347527	bcgsc.ca	37	X	2933323	2933323	+	Missense_Mutation	SNP	C	C	T	rs61997197	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ARSH	NM_001011719	exon4	c.C653T	p.T218I	.	.	365	22	116	1	C|0.952;T|0.048	130
ART3	419	bcgsc.ca	37	4	77003212	77003212	+	Missense_Mutation	SNP	T	T	C	rs72869116	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ART3	NM_001130017	exon3	c.T305C	p.I102T	.	.	75	5	52	0	T|0.950;C|0.050	92
ART3	419	bcgsc.ca	37	4	77033590	77033590	+	Missense_Mutation	SNP	C	C	T	rs1128864	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ART3	NM_001130016	exon12	c.C1088T	p.S363L	.	.	149	9	43	0	C|0.575;T|0.425	92
ASAP1	50807	bcgsc.ca	37	8	131124559	131124559	+	Missense_Mutation	SNP	T	T	C	rs966185	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASAP1	NM_018482	exon24	c.A2182G	p.I728V	.	.	425	13	94	0	T|0.556;C|0.444	95
ASAP1	50807	bcgsc.ca	37	8	131136340	131136340	+	Missense_Mutation	SNP	T	T	C	rs147030527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASAP1	NM_018482	exon18	c.A1526G	p.N509S	.	.	385	10	62	0	T|0.999;C|0.001	95
ASB10	136371	bcgsc.ca	37	7	150873664	150873664	+	Missense_Mutation	SNP	G	G	T	rs919533	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASB10	NM_001142459	exon4	c.C1204A	p.P402T	.	.	254	12	79	0	G|0.928;T|0.072	226
ASB16	92591	bcgsc.ca	37	17	42249507	42249507	+	Missense_Mutation	SNP	G	G	A	rs112609276	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASB16	NM_080863	exon2	c.G395A	p.R132Q	.	.	79	5	31	0	G|0.996;A|0.004	227
ASCC3	10973	bcgsc.ca	37	6	101094554	101094554	+	Silent	SNP	A	A	G	rs239239	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASCC3	NM_006828	exon22	c.T3570C	p.P1190P	.	.	171	8	61	0	A|0.438;G|0.562	96
ASCC3	10973	bcgsc.ca	37	6	101099464	101099464	+	Missense_Mutation	SNP	G	G	C	rs57534235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASCC3	NM_006828	exon19	c.C3047G	p.S1016C	.	.	478	18	172	0	G|0.992;C|0.008	96
ASF1B	55723	bcgsc.ca	37	19	14231325	14231325	+	Silent	SNP	C	C	G	rs8102267	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASF1B	NM_018154	exon4	c.G555C	p.G185G	.	.	84	8	33	0	C|0.793;G|0.207	90
ASIC1	41	bcgsc.ca	37	12	50473755	50473755	+	Silent	SNP	A	A	G	rs2307080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001256830	exon6	c.A1224G	p.K408K	.	.	203	8	67	0	A|0.955;G|0.045	.
ASIC4	55515	bcgsc.ca	37	2	220399951	220399951	+	Silent	SNP	A	A	G	rs2276643	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182847	exon5	c.A1458G	p.T486T	.	.	73	6	31	0	A|0.731;G|0.269	.
ASMTL	8623	ucsc.edu	37	X	1546842	1546842	+	Missense_Mutation	SNP	A	A	G	rs11553051	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASMTL	NM_004192	exon7	c.T682C	p.S228P	.	.	79	10	25	1	A|0.868;G|0.132	62
ASPG	374569	bcgsc.ca	37	14	104563932	104563932	+	Silent	SNP	G	G	T	rs1465163	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080464	exon5	c.G471T	p.L157L	.	.	154	15	37	1	G|0.778;T|0.222	.
ASPM	259266	bcgsc.ca	37	1	197072441	197072441	+	Silent	SNP	G	G	A	rs150642468	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASPM	NM_018136	exon18	c.C5940T	p.Y1980Y	.	.	533	13	226	0	G|0.998;A|0.002	615
ASPSCR1	79058	bcgsc.ca	37	17	79952700	79952700	+	Silent	SNP	G	G	A	rs116149334	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASPSCR1	NM_001251888	exon5	c.G378A	p.E126E	.	.	90	5	34	0	G|0.956;A|0.044	877
ASRGL1	80150	bcgsc.ca	37	11	62124597	62124597	+	Missense_Mutation	SNP	C	C	G	rs116195544	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASRGL1	NM_001083926	exon4	c.C472G	p.Q158E	.	.	363	14	186	0	C|0.998;G|0.002	90
ASTN1	460	bcgsc.ca	37	1	176863842	176863842	+	Silent	SNP	C	C	T	rs6680908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASTN1	NM_004319	exon17	c.G2796A	p.E932E	.	.	118	6	32	0	C|0.895;T|0.105	319
ASTN2	23245	ucsc.edu	37	9	119249690	119249690	+	Missense_Mutation	SNP	C	C	T	rs16933591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ASTN2	NM_014010	exon19	c.G3292A	p.V1098I	.	.	65	6	17	0	C|0.979;T|0.021	161
ATAD2B	54454	bcgsc.ca	37	2	24118705	24118705	+	Missense_Mutation	SNP	A	A	G	rs10210982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATAD2B	NM_001242338	exon2	c.T352C	p.S118P	.	.	168	11	69	0	A|0.994;G|0.006	68
ATAD3A	55210	hgsc.bcm.edu	37	1	1458209	1458210	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATAD3A	NM_018188	exon8	c.980_981insG	p.L327fs	.	.	203	13	107	0	.	91
ATAD3B	83858	bcgsc.ca	37	1	1421531	1421531	+	Silent	SNP	C	C	A	rs819976	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATAD3B	NM_031921	exon10	c.C1005A	p.T335T	.	.	106	9	67	0	C|0.587;A|0.413	44
ATAD3B	83858	bcgsc.ca	37	1	1425700	1425700	+	Silent	SNP	T	T	C	rs819980	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATAD3B	NM_031921	exon14	c.T1401C	p.I467I	.	.	118	15	55	0	T|0.629;C|0.371	44
ATAD3C	219293	bcgsc.ca	37	1	1386089	1386089	+	Missense_Mutation	SNP	C	C	T	rs149262155		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039211	exon1	c.C26T	p.A9V	.	.	156	10	72	0	C|0.986;T|0.014	.
ATAD3C	219293	bcgsc.ca	37	1	1387764	1387764	+	Missense_Mutation	SNP	G	G	A	rs9793256	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039211	exon3	c.G172A	p.G58R	.	.	387	14	143	0	G|0.744;A|0.256	.
ATAD3C	219293	bcgsc.ca	37	1	1396238	1396238	+	Silent	SNP	G	G	T	rs72896283		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039211	exon10	c.G921T	p.A307A	.	.	136	7	69	0	G|0.778;T|0.222	.
ATAT1	79969	bcgsc.ca	37	6	30610758	30610758	+	Missense_Mutation	SNP	G	G	T	rs150614928	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATAT1	NM_024909	exon10	c.G938T	p.G313V	.	.	148	8	45	1	G|0.988;T|0.012	92
ATF1	466	bcgsc.ca	37	12	51203371	51203371	+	Silent	SNP	C	C	T	rs1129406	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATF1	NM_005171	exon4	c.C327T	p.Y109Y	.	.	132	13	38	0	C|0.587;T|0.413	685
ATF6	22926	bcgsc.ca	37	1	161753802	161753802	+	Silent	SNP	T	T	C	rs2271013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATF6	NM_007348	exon4	c.T270C	p.P90P	.	.	188	11	78	0	T|0.889;C|0.111	93
ATF6	22926	bcgsc.ca	37	1	161753841	161753841	+	Silent	SNP	G	G	A	rs2271012	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATF6	NM_007348	exon4	c.G309A	p.S103S	.	.	230	10	88	0	G|0.873;A|0.127	93
ATF6	22926	bcgsc.ca	37	1	161761276	161761276	+	Missense_Mutation	SNP	G	G	C	rs2070150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATF6	NM_007348	exon5	c.G433C	p.A145P	.	.	113	5	30	0	G|0.889;C|0.111	93
ATF7IP2	80063	ucsc.edu;bcgsc.ca	37	16	10525230	10525230	+	Silent	SNP	T	T	C	rs34404959	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATF7IP2	NM_024997	exon3	c.T753C	p.T251T	.	.	233	27	92	0	T|0.795;C|0.205	186
ATG16L1	55054	bcgsc.ca	37	2	234183368	234183368	+	Missense_Mutation	SNP	A	A	G	rs2241880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATG16L1	NM_030803	exon9	c.A898G	p.T300A	.	.	262	15	87	0	G|0.422;N|0.000	90
ATG3	64422	bcgsc.ca	37	3	112256630	112256630	+	Silent	SNP	A	A	G	rs2969896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATG3	NM_022488	exon9	c.T618C	p.Y206Y	.	.	154	9	56	0	A|0.824;G|0.176	93
ATM	472	bcgsc.ca	37	11	108114840	108114840	+	Silent	SNP	T	T	C	rs2235003	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATM	NM_000051	exon6	c.T657C	p.C219C	.	.	350	16	185	0	T|0.975;C|0.025	3419
ATM	472	bcgsc.ca	37	11	108188136	108188136	+	Missense_Mutation	SNP	G	G	A	rs1800060	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATM	NM_000051	exon43	c.G6235A	p.V2079I	.	.	197	9	98	0	G|0.994;A|0.006	3419
ATM	472	ucsc.edu;bcgsc.ca	37	11	108106443	108106443	+	Missense_Mutation	SNP	T	T	A	rs2234997	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	ATM,lymph_node,lymphoid_neoplasm,0	ATM	NM_000051	exon5	c.T378A	p.D126E	.	.	153	16	105	0	T|0.939;A|0.061	3419
ATMIN	23300	bcgsc.ca	37	16	81077384	81077384	+	Silent	SNP	T	T	C	rs34105513	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATMIN	NM_015251	exon4	c.T1281C	p.S427S	.	.	309	11	159	0	T|0.977;C|0.023	68
ATP10A	57194	bcgsc.ca	37	15	25969090	25969090	+	Missense_Mutation	SNP	G	G	T	rs17116056	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP10A	NM_024490	exon6	c.C1058A	p.S353Y	.	.	179	6	72	0	G|0.894;T|0.106	139
ATP10B	23120	bcgsc.ca	37	5	160097663	160097663	+	Missense_Mutation	SNP	G	G	A	rs73306687	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP10B	NM_025153	exon7	c.C482T	p.T161I	.	.	221	7	60	0	A|0.007;G|0.993;T|0.000	72
ATP10D	57205	bcgsc.ca	37	4	47525166	47525166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP10D	NM_020453	exon4	c.A623G	p.E208G	.	.	274	7	81	0	.	93
ATP10D	57205	bcgsc.ca	37	4	47584046	47584046	+	Missense_Mutation	SNP	G	G	A	rs1058793	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP10D	NM_020453	exon21	c.G3718A	p.V1240I	.	.	592	23	202	0	G|0.747;A|0.253	93
ATP10D	57205	bcgsc.ca	37	4	47589203	47589203	+	Silent	SNP	G	G	A	rs1316874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP10D	NM_020453	exon22	c.G3921A	p.T1307T	.	.	404	14	139	0	G|0.865;A|0.135	93
ATP11A	23250	bcgsc.ca	37	13	113508611	113508611	+	Silent	SNP	A	A	G	rs61740306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP11A	NM_032189	exon19	c.A2010G	p.A670A	.	.	138	12	36	0	A|0.984;G|0.016	138
ATP11C	286410	bcgsc.ca	37	X	138827940	138827940	+	Missense_Mutation	SNP	C	C	T	rs55724992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP11C	NM_001010986	exon25	c.G2914A	p.V972M	.	.	240	9	116	0	C|0.963;T|0.037	198
ATP2A1	487	bcgsc.ca	37	16	28914693	28914693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP2A1	NM_004320	exon21	c.T2912C	p.L971P	.	.	143	6	71	0	.	93
ATP2C1	27032	hgsc.bcm.edu;bcgsc.ca	37	3	130688175	130688175	+	Missense_Mutation	SNP	G	G	A	rs41434650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP2C1	NM_001199181	exon16	c.G1450A	p.A484T	.	.	419	18	147	0	G|0.989;A|0.011	91
ATP2C2	9914	bcgsc.ca	37	16	84492778	84492778	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP2C2	NM_014861	exon22	c.C2200A	p.R734R	.	.	76	4	35	0	.	91
ATP5J2-PTCD1	100526740	bcgsc.ca	37	7	99032458	99032458	+	Silent	SNP	C	C	T	rs940336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001198879	exon3	c.G555A	p.P185P	.	.	213	10	84	0	C|0.928;T|0.072	.
ATP6	0	bcgsc.ca	37	MT	8701	8701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361899	exon1	c.A175G	p.T59A	.	.	468	29	543	5	.	.
ATP6V0A1	535	hgsc.bcm.edu;bcgsc.ca	37	17	40650971	40650971	+	Silent	SNP	G	G	A	rs112978072	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP6V0A1	NM_001130020	exon15	c.G1611A	p.T537T	.	.	506	26	177	0	G|0.996;A|0.004	91
ATP6V0D2	245972	hgsc.bcm.edu;bcgsc.ca	37	8	87155151	87155151	+	Missense_Mutation	SNP	G	G	A	rs149665160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP6V0D2	NM_152565	exon5	c.G607A	p.V203I	.	.	264	11	45	0	G|0.995;A|0.005	90
ATP6V1C2	245973	bcgsc.ca	37	2	10894132	10894132	+	Missense_Mutation	SNP	G	G	A	rs139030826	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP6V1C2	NM_001039362	exon4	c.G223A	p.V75M	.	.	132	7	46	0	G|0.996;A|0.004	91
ATP6V1C2	245973	bcgsc.ca	37	2	10923353	10923353	+	Silent	SNP	T	T	C	rs17364812	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP6V1C2	NM_001039362	exon14	c.T1248C	p.Y416Y	.	.	234	7	118	0	T|0.932;C|0.068	91
ATP6V1E2	90423	hgsc.bcm.edu;bcgsc.ca	37	2	46739683	46739683	+	Silent	SNP	A	A	G	rs17035245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP6V1E2	NM_080653	exon2	c.T168C	p.Y56Y	.	.	472	19	111	0	A|0.964;G|0.036	70
ATP6V1G2-DDX39B	100532737	bcgsc.ca	37	6	31503118	31503118	+	RNA	SNP	G	G	A	rs7753431	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	85	8	39	0	G|0.980;A|0.020	.
ATP7A	538	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77268502	77268502	+	Missense_Mutation	SNP	G	G	C	rs2227291	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP7A	NM_000052	exon10	c.G2299C	p.V767L	.	.	283	39	80	0	0|0.066;C|0.253	130
ATP8B2	57198	ucsc.edu	37	1	154303976	154303976	+	Silent	SNP	T	T	C	rs6702754	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATP8B2	NM_020452	exon6	c.T459C	p.N153N	.	.	115	11	54	1	T|0.700;C|0.300	92
ATR	545	bcgsc.ca	37	3	142272757	142272757	+	Silent	SNP	T	T	C	rs55895932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATR	NM_001184	exon11	c.A2442G	p.E814E	.	.	499	13	181	0	T|0.959;C|0.041	1139
ATRN	8455	bcgsc.ca	37	20	3624830	3624830	+	Silent	SNP	G	G	A	rs2246808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATRN	NM_139321	exon28	c.G4080A	p.P1360P	.	.	241	20	106	0	G|0.577;A|0.423	154
ATRX	546	hgsc.bcm.edu;bcgsc.ca	37	X	76937966	76937966	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATRX	NM_000489	exon9	c.G2782C	p.E928Q	.	.	195	14	86	0	.	248
ATRX	546	ucsc.edu;bcgsc.ca	37	X	76937963	76937963	+	Missense_Mutation	SNP	G	G	C	rs3088074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATRX	NM_000489	exon9	c.C2785G	p.Q929E	.	.	202	23	87	0	G|0.466;0|0.024	248
ATXN7	6314	bcgsc.ca	37	3	63982082	63982082	+	Missense_Mutation	SNP	G	G	A	rs3774729	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATXN7	NM_000333	exon12	c.G2584A	p.V862M	.	.	382	24	108	0	G|0.550;A|0.450	90
ATXN7L1	222255	bcgsc.ca	37	7	105254382	105254382	+	Missense_Mutation	SNP	C	C	T	rs61749986		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATXN7L1	NM_020725	exon10	c.G2399A	p.S800N	.	.	303	9	124	0	C|0.980;T|0.020	90
ATXN7L1	222255	bcgsc.ca	37	7	105401890	105401890	+	Silent	SNP	C	C	T	rs150437313	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATXN7L1	NM_152749	exon4	c.G375A	p.R125R	.	.	650	28	227	1	C|0.997;T|0.003	90
ATXN7L1	222255	hgsc.bcm.edu;bcgsc.ca	37	7	105264636	105264636	+	Silent	SNP	C	C	T	rs147354371	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ATXN7L1	NM_020725	exon8	c.G1281A	p.P427P	.	.	171	12	86	0	C|0.998;T|0.002	90
AUTS2	26053	bcgsc.ca	37	7	70228139	70228139	+	Silent	SNP	A	A	G	rs2293508	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AUTS2	NM_001127231	exon7	c.A1026G	p.P342P	.	.	76	4	46	0	A|0.903;G|0.097	92
AVEN	57099	bcgsc.ca	37	15	34159986	34159986	+	Missense_Mutation	SNP	T	T	C	rs2241647	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AVEN	NM_020371	exon5	c.A683G	p.Q228R	.	.	130	9	47	0	T|0.939;C|0.061	651
AXDND1	126859	hgsc.bcm.edu;bcgsc.ca	37	1	179347790	179347790	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AXDND1	NM_144696	exon5	c.C393T	p.Y131Y	.	.	204	12	71	0	.	93
AZI1	22994	hgsc.bcm.edu;bcgsc.ca	37	17	79166166	79166166	+	Missense_Mutation	SNP	C	C	A	rs201824599		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AZI1	NM_014984	exon21	c.G2574T	p.Q858H	.	.	129	10	50	0	.	136
AZU1	566	ucsc.edu	37	19	830854	830854	+	Silent	SNP	T	T	C	rs595844	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	AZU1	NM_001700	exon4	c.T507C	p.F169F	.	.	45	4	12	0	T|0.360;C|0.640	91
B3GALT4	8705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	33246031	33246031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	B3GALT4	NM_003782	exon1	c.A835C	p.K279Q	.	.	42	14	14	0	.	68
B3GALTL	145173	bcgsc.ca	37	13	31891746	31891746	+	Missense_Mutation	SNP	G	G	A	rs1041073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	B3GALTL	NM_194318	exon13	c.G1108A	p.E370K	.	.	184	7	40	0	G|0.337;A|0.663	92
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	71666019	71666019	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	B3GAT2	NM_080742	exon1	c.C114T	p.P38P	.	.	93	43	36	0	.	93
B3GNTL1	146712	bcgsc.ca	37	17	80992932	80992932	+	Silent	SNP	A	A	C	rs16940609	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	B3GNTL1	NM_001009905	exon4	c.T321G	p.S107S	.	.	250	13	96	0	A|0.794;C|0.206	92
B4GALNT2	124872	bcgsc.ca	37	17	47246163	47246163	+	Missense_Mutation	SNP	T	T	C	rs7224888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	B4GALNT2	NM_153446	exon10	c.T1396C	p.C466R	.	.	160	7	55	0	T|0.874;C|0.126	154
B4GALT7	11285	bcgsc.ca	37	5	177031348	177031348	+	Silent	SNP	T	T	C	rs11537644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	B4GALT7	NM_007255	exon2	c.T219C	p.R73R	.	.	94	12	42	1	T|0.352;C|0.648	91
BAG6	7917	hgsc.bcm.edu;broad.mit.edu	37	6	31609641	31609642	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BAG6	NM_004639	exon16	c.2327_2328insC	p.Q776fs	.	.	104	12	44	0	.	154
BAGE	574	ucsc.edu	37	21	11098723	11098723	+	Splice_Site	SNP	T	T	C	rs73151874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001187	exon2	c.14+1A>G	.	.	.	145	20	67	1	T|0.500;C|0.500	.
BAHCC1	57597	bcgsc.ca	37	17	79428767	79428767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BAHCC1	.	.	.	.	.	.	139	33	52	3	.	23
BANF2	140836	bcgsc.ca	37	20	17705793	17705793	+	Silent	SNP	T	T	C	rs1133096	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BANF2	NM_001159495	exon2	c.T144C	p.N48N	.	.	127	5	45	0	T|0.960;C|0.040	69
BARD1	580	bcgsc.ca	37	2	215632255	215632255	+	Missense_Mutation	SNP	C	C	T	rs2070094	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BARD1	NM_000465	exon6	c.G1519A	p.V507M	.	.	373	19	80	0	C|0.656;T|0.344	415
BAZ2A	11176	bcgsc.ca	37	12	57006797	57006797	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BAZ2A	NM_013449	exon6	c.1141+2T>C	.	.	.	149	5	49	0	.	22
BBS12	166379	bcgsc.ca	37	4	123663098	123663098	+	Silent	SNP	A	A	G	rs17006077	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BBS12	NM_001178007	exon3	c.A51G	p.Q17Q	.	.	388	14	162	1	A|0.927;G|0.073	92
BBS12	166379	bcgsc.ca	37	4	123663259	123663259	+	Missense_Mutation	SNP	A	A	G	rs143960329	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BBS12	NM_001178007	exon3	c.A212G	p.N71S	.	.	186	12	104	1	A|0.998;G|0.002	92
BBS12	166379	bcgsc.ca	37	4	123664204	123664204	+	Missense_Mutation	SNP	G	G	A	rs309370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BBS12	NM_001178007	exon3	c.G1157A	p.R386Q	.	.	160	14	57	0	G|0.542;A|0.458	92
BBS12	166379	bcgsc.ca	37	4	123664428	123664428	+	Missense_Mutation	SNP	A	A	C	rs10027479	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BBS12	NM_001178007	exon3	c.A1381C	p.N461H	.	.	228	14	118	0	A|0.974;C|0.026	92
BBS12	166379	bcgsc.ca	37	4	123664894	123664894	+	Missense_Mutation	SNP	G	G	A	rs28507107	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BBS12	NM_001178007	exon3	c.G1847A	p.S616N	.	.	90	7	46	0	G|0.970;A|0.030	92
BBS9	27241	bcgsc.ca	37	7	33392479	33392479	+	Missense_Mutation	SNP	C	C	A	rs73688160		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BBS9	NM_198428	exon15	c.C1546A	p.P516T	.	.	256	13	97	0	C|0.982;A|0.018	230
BCAR3	8412	bcgsc.ca	37	1	94047903	94047903	+	Silent	SNP	G	G	A	rs78522359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCAR3	NM_001261409	exon7	c.C1641T	p.N547N	.	.	316	14	117	0	G|0.990;A|0.010	228
BCAR3	8412	bcgsc.ca	37	1	94048153	94048153	+	Missense_Mutation	SNP	T	T	C	rs12062278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCAR3	NM_001261409	exon7	c.A1391G	p.E464G	.	.	124	5	69	0	T|0.942;C|0.058	228
BCAS1	8537	bcgsc.ca	37	20	52645166	52645166	+	Missense_Mutation	SNP	A	A	G	rs158551	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCAS1	NM_003657	exon4	c.T488C	p.V163A	.	.	155	9	69	0	A|0.908;G|0.092	652
BCAS3	54828	bcgsc.ca	37	17	58945949	58945949	+	Silent	SNP	G	G	A	rs73320618	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCAS3	NM_001099432	exon8	c.G489A	p.P163P	.	.	147	7	69	0	G|0.946;A|0.054	495
BCAS3	54828	bcgsc.ca	37	17	59104266	59104266	+	Silent	SNP	C	C	T	rs16944747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCAS3	NM_001099432	exon17	c.C1677T	p.A559A	.	.	511	16	133	0	C|0.969;T|0.031	495
BCCIP	56647	bcgsc.ca	37	10	127512275	127512275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCCIP	NM_078469	exon1	c.A149G	p.D50G	.	.	110	6	91	0	.	154
BCL2L12	83596	bcgsc.ca	37	19	50169220	50169220	+	Missense_Mutation	SNP	G	G	T	rs2060263	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BCL2L12	NM_001040668	exon1	c.G140T	p.G47V	.	.	124	5	44	0	G|0.950;T|0.050	651
BDP1	55814	bcgsc.ca	37	5	70800538	70800538	+	Missense_Mutation	SNP	G	G	A	rs3761967	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BDP1	NM_018429	exon16	c.G2332A	p.V778M	.	.	453	23	202	0	G|0.574;A|0.426	92
BDP1	55814	bcgsc.ca	37	5	70806457	70806457	+	Missense_Mutation	SNP	G	G	A	rs715748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BDP1	NM_018429	exon17	c.G3538A	p.G1180S	.	.	228	7	137	1	A|0.426;C|0.014	92
BDP1	55814	bcgsc.ca	37	5	70806649	70806649	+	Missense_Mutation	SNP	T	T	A	rs1961760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BDP1	NM_018429	exon17	c.T3730A	p.F1244I	.	.	133	10	116	0	T|0.486;A|0.514	92
BDP1	55814	bcgsc.ca	37	5	70818150	70818150	+	Missense_Mutation	SNP	C	C	G	rs12187098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BDP1	NM_018429	exon23	c.C5026G	p.Q1676E	.	.	280	8	130	1	C|0.971;G|0.029	92
BDP1	55814	bcgsc.ca	37	5	70840233	70840233	+	Silent	SNP	C	C	T	rs182190	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BDP1	NM_018429	exon31	c.C6462T	p.L2154L	.	.	252	8	181	0	C|0.591;T|0.408	92
BEND2	139105	bcgsc.ca	37	X	18221746	18221746	+	Missense_Mutation	SNP	A	A	C	rs74391498	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BEND2	NM_001184767	exon5	c.T782G	p.V261G	.	.	169	11	49	0	A|0.970;C|0.030	133
BEND2	139105	hgsc.bcm.edu;bcgsc.ca	37	X	18221980	18221980	+	Missense_Mutation	SNP	C	C	A	rs75342823	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BEND2	NM_001184767	exon5	c.G548T	p.S183I	.	.	172	10	41	0	C|0.970;A|0.030	133
BEND2	139105	hgsc.bcm.edu;bcgsc.ca	37	X	18234834	18234834	+	Silent	SNP	G	G	A	rs148252097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BEND2	NM_001184767	exon2	c.C45T	p.V15V	.	.	163	11	71	0	G|0.995;A|0.005	133
BEND2	139105	ucsc.edu;bcgsc.ca	37	X	18230715	18230715	+	Missense_Mutation	SNP	A	A	C	rs17274127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BEND2	NM_001184767	exon4	c.T462G	p.F154L	.	.	206	22	92	0	A|0.766;0|0.015	133
BET3L	100128327	bcgsc.ca	37	6	116818225	116818225	+	Silent	SNP	C	C	T	rs114678052	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001139444	exon5	c.G438A	p.A146A	.	.	287	11	136	0	C|0.968;T|0.032	.
BFSP2	8419	bcgsc.ca	37	3	133167363	133167363	+	Silent	SNP	G	G	A	rs2276737	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BFSP2	NM_003571	exon3	c.G603A	p.A201A	.	.	179	6	82	0	G|0.551;A|0.449	90
BGN	633	ucsc.edu	37	X	152770714	152770714	+	Missense_Mutation	SNP	A	A	G	rs146073993	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BGN	NM_001711	exon3	c.A257G	p.K86R	.	.	107	13	27	0	A|0.988;G|0.012	193
BICD1	636	bcgsc.ca	37	12	32481093	32481093	+	Silent	SNP	G	G	C	rs3748275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BICD1	NM_001714	exon5	c.G1704C	p.V568V	.	.	155	8	64	0	G|0.767;C|0.233	153
BID	637	bcgsc.ca	37	22	18218353	18218353	+	Missense_Mutation	SNP	A	A	G	rs59225839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BID	NM_197966	exon6	c.T719C	p.M240T	.	.	137	7	50	0	A|0.997;G|0.003	1083
BIN2	51411	bcgsc.ca	37	12	51696500	51696500	+	Silent	SNP	G	G	A	rs7975715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BIN2	NM_016293	exon4	c.C282T	p.D94D	.	.	177	14	38	0	G|0.868;A|0.132	91
BIN2	51411	bcgsc.ca	37	12	51707626	51707626	+	Missense_Mutation	SNP	C	C	T	rs7312857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BIN2	NM_016293	exon2	c.G143A	p.S48N	.	.	444	31	161	0	C|0.846;T|0.154	91
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103468870	103468870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001204425	exon2	c.A571G	p.I191V	.	.	217	67	104	0	.	.
BIVM-ERCC5	0	bcgsc.ca	37	13	103528002	103528002	+	Missense_Mutation	SNP	G	G	C	rs17655	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001204425	exon23	c.G4672C	p.D1558H	.	.	142	5	61	0	G|0.602;C|0.398	.
BLK	640	bcgsc.ca	37	8	11406614	11406614	+	Silent	SNP	G	G	A	rs111866701	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BLK	NM_001715	exon5	c.G351A	p.E117E	.	.	106	6	34	0	G|0.999;A|0.001	946
BLM	641	bcgsc.ca	37	15	91326099	91326099	+	Missense_Mutation	SNP	C	C	T	rs2227935		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BLM	NM_000057	exon13	c.C2603T	p.P868L	.	.	273	10	87	0	.	664
BLM	641	bcgsc.ca	37	15	91347430	91347430	+	Missense_Mutation	SNP	G	G	A	rs142928725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BLM	NM_000057	exon19	c.G3592A	p.V1198M	.	.	247	9	132	0	G|0.999;A|0.001	664
BMP15	9210	bcgsc.ca	37	X	50659280	50659280	+	Silent	SNP	C	C	T	rs17003221	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMP15	NM_005448	exon2	c.C852T	p.S284S	.	.	108	6	36	0	C|0.811;0|0.015	132
BMP1	649	bcgsc.ca	37	8	22067070	22067070	+	Silent	SNP	C	C	T	rs4076619	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMP1	NM_006129	exon19	c.C2688T	p.A896A	.	.	95	8	65	0	A|0.000;C|0.871;G|0.000;T|0.129	155
BMP2K	55589	bcgsc.ca	37	4	79799934	79799934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMP2K	NM_017593	exon14	c.A1840G	p.N614D	.	.	298	8	160	0	.	383
BMP2K	55589	bcgsc.ca	37	4	79800080	79800080	+	Silent	SNP	G	G	A	rs10518205	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMP2K	NM_017593	exon14	c.G1986A	p.Q662Q	.	.	237	12	112	0	G|0.881;A|0.119	383
BMP2K	55589	bcgsc.ca	37	4	79832509	79832509	+	Silent	SNP	A	A	C	rs12649750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMP2K	NM_198892	exon16	c.A2808C	p.P936P	.	.	399	14	139	0	A|0.888;C|0.112	383
BMPER	168667	bcgsc.ca	37	7	34010012	34010012	+	Missense_Mutation	SNP	G	G	A	rs62623441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMPER	NM_133468	exon6	c.G474A	p.M158I	.	.	230	16	65	0	G|0.974;A|0.026	92
BMPER	168667	hgsc.bcm.edu;bcgsc.ca	37	7	34118476	34118476	+	Silent	SNP	C	C	T	rs116085783	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BMPER	NM_133468	exon13	c.C1086T	p.G362G	.	.	133	6	46	0	C|0.991;T|0.009	92
BNC2	54796	bcgsc.ca	37	9	16435714	16435714	+	Silent	SNP	T	T	C	rs3739715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BNC2	NM_017637	exon6	c.A2478G	p.L826L	.	.	151	8	80	0	T|0.904;C|0.096	92
BNC2	54796	bcgsc.ca	37	9	16437256	16437256	+	Silent	SNP	G	G	A	rs77464990	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BNC2	NM_017637	exon6	c.C936T	p.F312F	.	.	305	8	120	0	G|0.988;A|0.012	92
BNIP3	664	bcgsc.ca	37	10	133786586	133786586	+	Silent	SNP	T	T	C	rs56629693		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BNIP3	NM_004052	exon3	c.A234G	p.R78R	.	.	345	25	107	0	.	227
BOC	91653	hgsc.bcm.edu	37	3	112989772	112989772	+	Silent	SNP	C	C	T	rs139574939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BOC	NM_033254	exon6	c.C648T	p.S216S	.	.	78	6	24	0	C|0.997;T|0.003	157
BOC	91653	hgsc.bcm.edu;bcgsc.ca	37	3	113002415	113002415	+	Silent	SNP	C	C	T	rs141324680	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BOC	NM_033254	exon16	c.C2589T	p.G863G	.	.	416	19	109	0	C|0.999;T|0.001	157
BPHL	670	bcgsc.ca	37	6	3152760	3152760	+	Missense_Mutation	SNP	T	T	C	rs2231370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BPHL	NM_004332	exon7	c.T827C	p.L276S	.	.	235	12	81	0	T|0.949;C|0.051	90
BPI	671	bcgsc.ca	37	20	36954790	36954790	+	Missense_Mutation	SNP	G	G	A	rs5743524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BPI	NM_001725	exon10	c.G1129A	p.V377I	.	.	185	13	44	0	G|0.949;A|0.051	94
BPIFA2	140683	bcgsc.ca	37	20	31760760	31760760	+	Silent	SNP	C	C	T	rs58172152	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	C20orf70,NS,carcinoma,+2	.	NM_080574	exon3	c.C180T	p.V60V	.	.	287	18	85	0	C|0.984;T|0.016	.
BPIFA2	140683	bcgsc.ca	37	20	31768363	31768363	+	Silent	SNP	C	C	T	rs34968847	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_080574	exon8	c.C747T	p.I249I	.	.	189	8	52	0	C|0.940;T|0.060	.
BPIFB3	359710	bcgsc.ca	37	20	31649589	31649589	+	Silent	SNP	A	A	G	rs34032795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182658	exon5	c.A543G	p.P181P	.	.	203	13	79	0	A|0.981;G|0.019	.
BPNT1	10380	ucsc.edu	37	1	220231338	220231338	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BPNT1	.	.	.	.	.	.	45	1	45	0	.	91
BPTF	2186	bcgsc.ca	37	17	65924524	65924524	+	Silent	SNP	A	A	G	rs73338705	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BPTF	NM_004459	exon18	c.A6183G	p.P2061P	.	.	386	25	128	0	A|0.976;G|0.024	94
BPTF	2186	ucsc.edu;bcgsc.ca	37	17	65822320	65822320	+	Missense_Mutation	SNP	C	C	G	rs73351760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BPTF	NM_004459	exon1	c.C480G	p.D160E	.	.	126	16	48	0	C|0.961;G|0.039	94
BPTF	2186	ucsc.edu;bcgsc.ca	37	17	65907663	65907663	+	Silent	SNP	C	C	G	rs9909489	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BPTF	NM_004459	exon13	c.C4041G	p.A1347A	.	.	97	9	73	0	C|0.900;G|0.100	94
BRAF	673	bcgsc.ca	37	7	140449150	140449150	+	Silent	SNP	T	T	C	rs9648696	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRAF	NM_004333	exon16	c.A1929G	p.G643G	.	.	348	16	123	0	T|0.696;C|0.304	92146
BRCA2	675	bcgsc.ca	37	13	32929232	32929232	+	Silent	SNP	A	A	G	rs1799955	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRCA2	NM_000059	exon14	c.A7242G	p.S2414S	.	.	168	6	102	0	A|0.772;G|0.228	3153
BRCA2	675	bcgsc.ca	37	13	32929309	32929309	+	Missense_Mutation	SNP	A	A	G	rs4986860	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRCA2	NM_000059	exon14	c.A7319G	p.H2440R	.	.	241	17	120	0	A|0.990;G|0.010	3153
BRCA2	675	hgsc.bcm.edu;bcgsc.ca	37	13	32944667	32944667	+	Silent	SNP	A	A	C	rs9590940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRCA2	NM_000059	exon19	c.A8460C	p.V2820V	.	.	485	20	195	0	A|0.988;C|0.012	3153
BRD1	23774	bcgsc.ca	37	22	50187853	50187853	+	Missense_Mutation	SNP	C	C	T	rs35331092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRD1	NM_014577	exon6	c.G2188A	p.A730T	.	.	130	6	36	0	C|0.936;T|0.064	91
BRD1	23774	bcgsc.ca	37	22	50216739	50216739	+	Silent	SNP	G	G	A	rs6009883	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRD1	NM_014577	exon1	c.C1227T	p.G409G	.	.	247	18	103	0	G|0.943;A|0.057	91
BRD1	23774	bcgsc.ca	37	22	50216754	50216754	+	Silent	SNP	G	G	A	rs2239848	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRD1	NM_014577	exon1	c.C1212T	p.V404V	.	.	225	13	100	0	G|0.881;A|0.119	91
BRD2	6046	bcgsc.ca	37	6	32946034	32946034	+	Silent	SNP	T	T	C	rs1063379	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRD2	NM_005104	exon10	c.T1710C	p.D570D	.	.	111	6	53	0	T|0.955;C|0.045	398
BRD7	29117	bcgsc.ca	37	16	50368663	50368663	+	Silent	SNP	G	G	A	rs1062348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRD7	NM_013263	exon7	c.C846T	p.A282A	.	.	198	12	70	0	G|0.826;A|0.174	90
BRD9	65980	hgsc.bcm.edu;bcgsc.ca	37	5	886744	886744	+	Missense_Mutation	SNP	C	C	T	rs34292369	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRD9	NM_023924	exon7	c.G796A	p.A266T	.	.	412	18	144	0	C|0.958;T|0.042	90
BRDT	676	bcgsc.ca	37	1	92442695	92442695	+	Missense_Mutation	SNP	A	A	C	rs1156281	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRDT	NM_001242806	exon6	c.A726C	p.K242N	.	.	161	6	83	0	A|0.865;C|0.135	374
BRWD1	54014	bcgsc.ca	37	21	40652142	40652142	+	Silent	SNP	G	G	A	rs2836972	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BRWD1	NM_018963	exon9	c.C864T	p.Y288Y	.	.	182	6	68	1	G|0.693;A|0.307	94
BSCL2	26580	bcgsc.ca	37	11	62472884	62472884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BSCL2	NM_001122955	exon2	c.T293C	p.L98P	.	.	123	6	76	0	.	514
BSN	8927	bcgsc.ca	37	3	49701298	49701298	+	Missense_Mutation	SNP	G	G	A	rs2005557	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BSN	NM_003458	exon8	c.G11587A	p.A3863T	.	.	235	10	93	0	G|0.472;A|0.528	97
BSPH1	100131137	bcgsc.ca	37	19	48495304	48495304	+	Missense_Mutation	SNP	G	G	A	rs60213124	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001128326	exon1	c.C35T	p.T12M	.	.	193	7	84	0	G|0.819;A|0.181	.
BTBD16	118663	bcgsc.ca	37	10	124036390	124036390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTBD16	NM_144587	exon3	c.T103C	p.S35P	.	.	195	6	45	0	.	91
BTBD3	22903	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	11900425	11900425	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTBD3	NM_014962	exon3	c.G477A	p.E159E	.	.	268	16	81	0	.	92
BTK	695	bcgsc.ca	37	X	100608191	100608191	+	Silent	SNP	G	G	A	rs1135363	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTK	NM_000061	exon18	c.C1899T	p.C633C	.	.	91	8	31	0	0|0.003;T|0.083;G|0.443;C|0.114;A|0.356	1395
BTN1A1	696	bcgsc.ca	37	6	26505362	26505362	+	Missense_Mutation	SNP	G	G	A	rs3736781	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTN1A1	NM_001732	exon3	c.G637A	p.A213T	.	.	231	9	68	0	G|0.485;A|0.515	92
BTNL3	10917	bcgsc.ca	37	5	180424423	180424423	+	Missense_Mutation	SNP	G	G	C	rs73815152		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_197975	exon3	c.G608C	p.S203T	.	.	213	7	97	0	G|0.980;C|0.020	.
BTNL8	79908	bcgsc.ca	37	5	180338368	180338368	+	Missense_Mutation	SNP	A	A	G	rs2276995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001159708	exon3	c.A427G	p.T143A	.	.	416	19	118	0	A|0.529;G|0.471	24
BTNL8	79908	bcgsc.ca	37	5	180374523	180374523	+	Missense_Mutation	SNP	G	G	A	rs7724813	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001159708	exon4	c.G685A	p.E229K	.	.	354	15	165	0	G|0.732;A|0.268	24
BTNL8	79908	bcgsc.ca	37	5	180374534	180374534	+	Silent	SNP	G	G	A	rs3733756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001159708	exon4	c.G696A	p.S232S	.	.	387	15	176	0	G|0.508;A|0.492	24
BTNL8	79908	bcgsc.ca	37	5	180376972	180376972	+	Missense_Mutation	SNP	C	C	G	rs77534051		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001040462	exon8	c.C931G	p.H311D	.	.	187	12	94	0	C|1.000;|0.000	24
BTNL8	79908	bcgsc.ca	37	5	180376974	180376974	+	Missense_Mutation	SNP	T	T	G	rs77335601		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001040462	exon8	c.T933G	p.H311Q	.	.	189	12	93	0	T|1.000;|0.000	24
BTNL8	79908	bcgsc.ca	37	5	180377018	180377018	+	Missense_Mutation	SNP	C	C	A	rs7703365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001040462	exon8	c.C977A	p.T326K	.	.	297	11	148	0	C|0.888;A|0.112	24
BTNL8	79908	bcgsc.ca	37	5	180377331	180377331	+	Silent	SNP	T	T	C	rs2278689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001040462	exon8	c.T1290C	p.Y430Y	.	.	214	12	137	0	T|0.757;C|0.243	24
BTNL8	79908	bcgsc.ca	37	5	180377470	180377470	+	Missense_Mutation	SNP	G	G	A	rs113820381		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BTNL8	NM_001040462	exon8	c.G1429A	p.A477T	.	.	82	6	50	1	G|0.772;A|0.228	24
BUB1B	701	bcgsc.ca	37	15	40498503	40498503	+	Missense_Mutation	SNP	T	T	C	rs1801528	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BUB1B	NM_001211	exon15	c.T1853C	p.V618A	.	.	255	11	110	1	T|0.917;C|0.083	1509
BUB1B	701	bcgsc.ca	37	15	40512906	40512906	+	Silent	SNP	A	A	G	rs35611758	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	BUB1B	NM_001211	exon23	c.A3099G	p.K1033K	.	.	185	7	68	0	A|0.915;G|0.085	1509
C10orf120	399814	bcgsc.ca	37	10	124457452	124457452	+	Missense_Mutation	SNP	C	C	T	rs2947594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf120	NM_001010912	exon3	c.G805A	p.A269T	.	.	365	28	196	1	C|0.207;T|0.793	91
C10orf120	399814	bcgsc.ca	37	10	124457906	124457906	+	Silent	SNP	C	C	T	rs2901343	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf120	NM_001010912	exon3	c.G351A	p.P117P	.	.	312	14	112	0	C|0.580;T|0.420	91
C10orf120	399814	bcgsc.ca	37	10	124459248	124459248	+	Missense_Mutation	SNP	G	G	T	rs41448048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf120	NM_001010912	exon1	c.C59A	p.T20K	.	.	352	11	131	0	G|0.936;T|0.064	91
C10orf12	26148	bcgsc.ca	37	10	98742750	98742750	+	Missense_Mutation	SNP	A	A	C	rs3829856	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf12	NM_015652	exon1	c.A1603C	p.I535L	.	.	102	8	65	0	A|0.918;C|0.082	92
C10orf129	142827	bcgsc.ca	37	10	96970475	96970475	+	Missense_Mutation	SNP	A	A	G	rs7090248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf129	NM_207321	exon5	c.A680G	p.K227R	.	.	247	17	68	0	A|0.952;G|0.048	90
C10orf53	282966	bcgsc.ca	37	10	50916542	50916542	+	Missense_Mutation	SNP	C	C	T	rs4838554	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf53	NM_182554	exon3	c.C353T	p.T118I	.	.	214	10	79	0	C|0.571;T|0.429	90
C10orf54	64115	bcgsc.ca	37	10	73521578	73521578	+	Silent	SNP	G	G	A	rs3747866	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf54	NM_022153	exon2	c.C288T	p.D96D	.	.	155	8	71	1	G|0.790;A|0.210	515
C10orf67	256815	bcgsc.ca	37	10	23633566	23633566	+	Silent	SNP	C	C	A	rs2036917	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153714	exon1	c.G141T	p.R47R	.	.	99	7	35	0	C|0.343;A|0.657	.
C10orf71	118461	bcgsc.ca	37	10	50533495	50533495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf71	NM_001135196	exon3	c.C2905T	p.R969W	.	.	75	5	36	0	.	90
C10orf90	118611	bcgsc.ca	37	10	128150096	128150096	+	Missense_Mutation	SNP	G	G	T	rs12412320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C10orf90	NM_001004298	exon5	c.C1593A	p.D531E	.	.	380	12	87	0	G|0.916;T|0.084	92
C11orf16	56673	bcgsc.ca	37	11	8942942	8942942	+	Missense_Mutation	SNP	C	C	T	rs2653601	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf16	NM_020643	exon6	c.G1325A	p.R442Q	.	.	366	16	159	0	T|0.216;G|0.161	92
C11orf21	29125	bcgsc.ca	37	11	2320884	2320884	+	Silent	SNP	A	A	G	rs1501466	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001142946	exon4	c.T339C	p.G113G	.	.	148	9	33	0	A|0.799;G|0.201	.
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	76255823	76255823	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf30	NM_020193	exon19	c.A3230T	p.Q1077L	.	.	58	27	19	0	.	232
C11orf35	256329	hgsc.bcm.edu;bcgsc.ca	37	11	557444	557444	+	Missense_Mutation	SNP	C	C	T	rs61329792	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf35	NM_173573	exon7	c.G668A	p.R223Q	.	.	183	10	65	0	C|0.997;T|0.003	69
C11orf44	283171	mdanderson.org	37	11	130542882	130542882	+	Silent	SNP	C	C	T	rs7933829	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf44	NM_001271983	exon1	c.C9T	p.L3L	.	.	189	24	59	1	C|0.739;T|0.261	23
C11orf74	119710	bcgsc.ca	37	11	36631707	36631707	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf74	NM_138787	exon2	c.A54G	p.R18R	.	.	77	4	34	0	.	68
C11orf92	399948	bcgsc.ca	37	11	111167003	111167003	+	RNA	SNP	C	C	T	rs61764070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf92	.	.	.	.	.	.	106	5	34	0	C|0.945;T|0.055	226
C11orf92	399948	bcgsc.ca	37	11	111167020	111167020	+	RNA	SNP	C	C	A	rs145253867	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C11orf92	.	.	.	.	.	.	100	5	38	0	C|0.991;A|0.009	226
C12orf40	283461	bcgsc.ca	37	12	40034770	40034770	+	Missense_Mutation	SNP	A	A	C	rs58302581		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf40	NM_001031748	exon2	c.A37C	p.I13L	.	.	316	10	136	0	A|0.998;C|0.002	96
C12orf40	283461	bcgsc.ca	37	12	40085906	40085906	+	Missense_Mutation	SNP	A	A	T	rs73270414	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf40	NM_001031748	exon11	c.A1403T	p.K468M	.	.	384	11	147	0	A|0.858;T|0.142	96
C12orf42	374470	bcgsc.ca	37	12	103696243	103696243	+	Silent	SNP	G	G	C	rs115037055	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf42	NM_001099336	exon6	c.C726G	p.L242L	.	.	97	8	42	0	G|0.991;C|0.009	91
C12orf50	160419	bcgsc.ca	37	12	88379715	88379715	+	Silent	SNP	C	C	T	rs77110438	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf50	NM_152589	exon11	c.G1038A	p.A346A	.	.	430	19	147	0	C|0.968;T|0.032	93
C12orf50	160419	ucsc.edu;bcgsc.ca	37	12	88380094	88380094	+	Missense_Mutation	SNP	T	T	C	rs10777084	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf50	NM_152589	exon10	c.A917G	p.Q306R	.	.	91	12	30	0	T|0.704;C|0.296	93
C12orf54	121273	bcgsc.ca	37	12	48888689	48888689	+	Silent	SNP	C	C	G	rs9268	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf54	NM_152319	exon8	c.C351G	p.L117L	.	.	87	6	40	0	C|0.534;G|0.466	90
C12orf60	144608	bcgsc.ca	37	12	14976063	14976063	+	Missense_Mutation	SNP	A	A	G	rs7304054	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf60	NM_175874	exon2	c.A194G	p.K65R	.	.	178	13	77	0	A|0.819;G|0.181	91
C12orf60	144608	bcgsc.ca	37	12	14976178	14976178	+	Missense_Mutation	SNP	T	T	A	rs7307438	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C12orf60	NM_175874	exon2	c.T309A	p.N103K	.	.	195	20	74	0	T|0.822;A|0.178	91
C14orf159	80017	bcgsc.ca	37	14	91666248	91666248	+	Silent	SNP	T	T	C	rs28715808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C14orf159	NM_001102368	exon11	c.T1443C	p.T481T	.	.	175	9	79	0	T|0.967;C|0.033	92
C14orf180	400258	bcgsc.ca	37	14	105052863	105052863	+	Silent	SNP	G	G	A	rs7152786	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C14orf180	NM_001008404	exon2	c.G96A	p.V32V	.	.	135	9	75	0	G|0.914;A|0.086	492
C14orf2	9556	bcgsc.ca	37	14	104381502	104381502	+	Missense_Mutation	SNP	T	T	C	rs1053419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C14orf2	NM_001127393	exon3	c.A76G	p.I26V	.	.	177	10	97	0	T|0.637;G|0.034;C|0.157;A|0.172	90
C14orf37	145407	bcgsc.ca	37	14	58563694	58563694	+	Missense_Mutation	SNP	G	G	C	rs2273442	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C14orf37	NM_001001872	exon5	c.C1837G	p.Q613E	.	.	285	12	103	0	G|0.481;C|0.519	90
C14orf80	283643	bcgsc.ca	37	14	105957446	105957446	+	Missense_Mutation	SNP	G	G	A	rs76864584		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C14orf80	NM_001134877	exon2	c.G7A	p.G3S	.	.	102	9	35	0	G|0.956;A|0.044	90
C15orf38	348110	bcgsc.ca	37	15	90451555	90451555	+	Silent	SNP	G	G	A	rs111380828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C15orf38	NM_182616	exon3	c.C258T	p.S86S	.	.	305	12	139	0	G|0.999;A|0.001	44
C15orf55	256646	bcgsc.ca	37	15	34647812	34647812	+	Missense_Mutation	SNP	C	C	T	rs78073896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C15orf55	NM_175741	exon7	c.C1519T	p.R507W	.	.	146	9	57	0	C|0.977;T|0.023	206
C15orf60	283677	bcgsc.ca	37	15	73843387	73843387	+	Missense_Mutation	SNP	G	G	A	rs12102004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C15orf60	NM_001042367	exon4	c.G442A	p.V148M	.	.	136	8	62	0	G|0.957;A|0.043	46
C16orf58	64755	bcgsc.ca	37	16	31505252	31505252	+	Silent	SNP	C	C	T	rs34231527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C16orf58	NM_022744	exon7	c.C708A	p.S236S	.	.	104	6	40	0	C|0.991;T|0.009	154
C17orf74	201243	bcgsc.ca	37	17	7330437	7330437	+	Missense_Mutation	SNP	A	A	G	rs3892554	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C17orf74	NM_175734	exon3	c.A1127G	p.Q376R	.	.	128	5	37	0	A|0.955;G|0.045	90
C17orf77	146723	ucsc.edu	37	17	72588806	72588806	+	Nonsense_Mutation	SNP	C	C	A	rs545652	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C17orf77	NM_152460	exon3	c.C621A	p.C207X	.	.	132	13	51	0	C|0.751;A|0.249	90
C19orf10	56005	ucsc.edu	37	19	4658047	4658047	+	Silent	SNP	A	A	G	rs12683	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C19orf10	NM_019107	exon6	c.T492C	p.I164I	.	.	62	7	10	0	T|0.217;G|0.104;C|0.038;N|0.001;A|0.640	90
C19orf12	83636	bcgsc.ca	37	19	30193721	30193721	+	Silent	SNP	G	G	A	rs10424582	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C19orf12	NM_001031726	exon3	c.C357T	p.T119T	.	.	124	5	40	0	G|0.297;A|0.703	204
C19orf21	126353	bcgsc.ca	37	19	756985	756985	+	Silent	SNP	T	T	G	rs8110536	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C19orf21	NM_173481	exon2	c.T39G	p.P13P	.	.	136	15	38	0	T|0.840;G|0.160	91
C19orf47	126526	hgsc.bcm.edu;bcgsc.ca	37	19	40834394	40834394	+	Missense_Mutation	SNP	C	C	T	rs9973304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C19orf47	NM_001256440	exon6	c.G476A	p.R159H	.	.	227	16	67	0	C|0.992;T|0.008	92
C19orf57	79173	ucsc.edu	37	19	14000870	14000870	+	Missense_Mutation	SNP	C	C	T	rs2305775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C19orf57	NM_024323	exon6	c.G799A	p.G267R	.	.	72	13	15	0	C|0.657;T|0.343	93
C19orf59	199675	hgsc.bcm.edu;bcgsc.ca	37	19	7742594	7742594	+	Missense_Mutation	SNP	T	T	G	rs146421608	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C19orf59	NM_174918	exon2	c.T166G	p.S56A	.	.	224	9	81	0	T|0.999;G|0.001	69
C19orf80	55908	bcgsc.ca	37	19	11350340	11350340	+	Silent	SNP	C	C	G	rs892066	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018687	exon1	c.C27G	p.L9L	.	.	181	13	39	0	C|0.468;G|0.532	.
C1orf101	257044	bcgsc.ca	37	1	244715882	244715882	+	Silent	SNP	A	A	G	rs34510134	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf101	NM_173807	exon9	c.A795G	p.S265S	.	.	540	18	169	0	A|0.933;G|0.067	154
C1orf101	257044	bcgsc.ca	37	1	244715966	244715966	+	Silent	SNP	G	G	A	rs35587664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf101	NM_173807	exon9	c.G879A	p.S293S	.	.	307	12	143	0	G|0.880;A|0.120	154
C1orf116	79098	bcgsc.ca	37	1	207196639	207196639	+	Missense_Mutation	SNP	T	T	G	rs34660159	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf116	NM_023938	exon4	c.A470C	p.N157T	.	.	185	10	57	1	T|0.903;G|0.097	93
C1orf127	148345	bcgsc.ca	37	1	11008594	11008594	+	Missense_Mutation	SNP	A	A	T	rs1281016	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf127	NM_001170754	exon12	c.T1598A	p.V533D	.	.	106	8	49	0	A|0.703;T|0.297	91
C1orf127	148345	ucsc.edu;bcgsc.ca	37	1	11008497	11008497	+	Silent	SNP	G	G	C	rs1281017	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf127	NM_001170754	exon12	c.C1695G	p.G565G	.	.	54	5	47	0	G|0.625;C|0.375	91
C1orf141	400757	bcgsc.ca	37	1	67558756	67558756	+	Missense_Mutation	SNP	C	C	T	rs41313272	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf141	NM_001276351	exon8	c.G1135A	p.E379K	.	.	279	18	123	0	C|0.904;T|0.096	91
C1orf141	400757	bcgsc.ca	37	1	67558763	67558763	+	Silent	SNP	A	A	G	rs41299551	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf141	NM_001276351	exon8	c.T1128C	p.Y376Y	.	.	277	22	136	0	A|0.902;G|0.098	91
C1orf141	400757	bcgsc.ca	37	1	67561090	67561090	+	Missense_Mutation	SNP	T	T	C	rs72933970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf141	NM_001276351	exon7	c.A431G	p.Q144R	.	.	138	5	107	0	T|0.903;C|0.097	91
C1orf146	388649	bcgsc.ca	37	1	92709824	92709824	+	Missense_Mutation	SNP	G	G	C	rs61732740	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf146	NM_001012425	exon4	c.G211C	p.E71Q	.	.	308	12	189	0	G|0.988;C|0.012	91
C1orf159	54991	bcgsc.ca	37	1	1021346	1021346	+	Silent	SNP	A	A	G	rs10907177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_017891	exon7	c.T357C	p.I119I	.	.	110	5	68	0	A|0.814;G|0.186	.
C1orf168	199920	bcgsc.ca	37	1	57257817	57257817	+	Silent	SNP	T	T	C	rs2298130	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf168	NM_001004303	exon2	c.A669G	p.K223K	.	.	135	7	72	0	T|0.778;C|0.222	95
C1orf168	199920	bcgsc.ca	37	1	57258111	57258111	+	Missense_Mutation	SNP	G	G	C	rs17114336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf168	NM_001004303	exon2	c.C375G	p.I125M	.	.	216	9	123	0	G|0.968;C|0.032	95
C1orf170	84808	bcgsc.ca	37	1	914940	914940	+	RNA	SNP	T	T	C	rs13303033	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf170	.	.	.	.	.	.	111	10	48	0	T|0.475;C|0.525	68
C1orf172	126695	bcgsc.ca	37	1	27278671	27278671	+	Silent	SNP	C	C	T	rs17162368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf172	NM_152365	exon2	c.G201A	p.P67P	.	.	93	7	36	0	C|0.966;T|0.034	154
C1orf173	127254	bcgsc.ca	37	1	75037845	75037845	+	Silent	SNP	A	A	G	rs12723334	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf173	NM_001002912	exon14	c.T3549C	p.S1183S	.	.	291	14	125	1	A|0.649;G|0.351	94
C1orf173	127254	bcgsc.ca	37	1	75038228	75038228	+	Missense_Mutation	SNP	A	A	C	rs11580409	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf173	NM_001002912	exon14	c.T3166G	p.L1056V	.	.	458	18	160	1	A|0.636;C|0.364	94
C1orf173	127254	bcgsc.ca	37	1	75039091	75039091	+	Missense_Mutation	SNP	G	G	A	rs61731318	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf173	NM_001002912	exon14	c.C2303T	p.T768I	.	.	491	16	147	0	G|0.976;A|0.024	94
C1orf174	339448	bcgsc.ca	37	1	3807360	3807360	+	Missense_Mutation	SNP	G	G	A	rs76727703	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf174	NM_207356	exon3	c.C391T	p.R131C	.	.	126	8	59	1	G|0.991;A|0.009	68
C1orf186	440712	bcgsc.ca	37	1	206239403	206239403	+	Silent	SNP	C	C	T	rs28602496	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf186	NM_001007544	exon6	c.G495A	p.A165A	.	.	286	7	69	0	C|0.907;T|0.093	90
C1orf186	440712	bcgsc.ca	37	1	206239574	206239574	+	Silent	SNP	T	T	C	rs28391411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf186	NM_001007544	exon6	c.A324G	p.T108T	.	.	194	16	62	0	T|0.811;C|0.189	90
C1orf50	79078	bcgsc.ca	37	1	43240901	43240901	+	Missense_Mutation	SNP	C	C	T	rs112235212	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf50	NM_024097	exon5	c.C436T	p.H146Y	.	.	130	5	30	0	C|0.994;T|0.006	91
C1orf94	84970	bcgsc.ca	37	1	34663143	34663143	+	Missense_Mutation	SNP	C	C	A	rs61741816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf94	NM_001134734	exon2	c.C638A	p.A213D	.	.	50	5	43	0	C|0.985;A|0.015	90
C1orf94	84970	bcgsc.ca	37	1	34663147	34663147	+	Silent	SNP	C	C	T	rs1382603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf94	NM_001134734	exon2	c.C642T	p.A214A	.	.	49	5	43	0	C|0.913;T|0.087	90
C1orf94	84970	bcgsc.ca	37	1	34663180	34663180	+	Silent	SNP	G	G	A	rs3795412	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf94	NM_001134734	exon2	c.G675A	p.R225R	.	.	46	4	41	0	G|0.833;A|0.167	90
C1orf94	84970	ucsc.edu;bcgsc.ca	37	1	34663208	34663208	+	Missense_Mutation	SNP	C	C	G	rs1382602	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1orf94	NM_001134734	exon2	c.C703G	p.Q235E	.	.	61	8	35	0	C|0.536;G|0.463	90
C1QL3	389941	bcgsc.ca	37	10	16562600	16562600	+	Silent	SNP	G	G	A	rs72772306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1QL3	NM_001010908	exon1	c.C465T	p.H155H	.	.	411	26	168	1	G|0.848;A|0.152	91
C1QTNF6	114904	ucsc.edu;bcgsc.ca	37	22	37578579	37578579	+	Silent	SNP	C	C	T	rs229519	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C1QTNF6	NM_182486	exon3	c.G486A	p.T162T	.	.	80	9	32	0	C|0.580;T|0.420	90
C20orf111	51526	ucsc.edu;bcgsc.ca	37	20	42825929	42825929	+	Silent	SNP	C	C	T	rs8268	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C20orf111	NM_016470	exon4	c.G642A	p.V214V	.	.	129	13	37	0	C|0.766;T|0.234	90
C20orf166-AS1	253868	ucsc.edu	37	20	61143945	61143945	+	RNA	SNP	T	T	G	rs3934573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	113	12	36	0	T|0.489;G|0.511	.
C20orf173	140873	bcgsc.ca	37	20	34116282	34116282	+	Missense_Mutation	SNP	T	T	C	rs7261862	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145350	exon4	c.A580G	p.K194E	.	.	145	10	84	0	T|0.793;C|0.207	.
C20orf194	25943	bcgsc.ca	37	20	3362033	3362033	+	Silent	SNP	T	T	C	rs6051818	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C20orf194	NM_001009984	exon3	c.A276G	p.V92V	.	.	118	10	49	0	T|0.757;C|0.243	68
C20orf194	25943	hgsc.bcm.edu;bcgsc.ca	37	20	3233305	3233305	+	Silent	SNP	G	G	A	rs61744985	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C20orf194	NM_001009984	exon37	c.C3447T	p.Y1149Y	.	.	312	14	126	0	G|0.991;A|0.009	68
C20orf26	26074	bcgsc.ca	37	20	20037320	20037320	+	Missense_Mutation	SNP	G	G	A	rs61744672	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C20orf26	NM_015585	exon2	c.G23A	p.R8K	.	.	152	10	88	0	G|0.982;A|0.018	94
C20orf26	26074	bcgsc.ca	37	20	20208971	20208971	+	Missense_Mutation	SNP	G	G	A	rs6046740	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C20orf26	NM_015585	exon18	c.G2011A	p.V671I	.	.	701	26	277	0	G|0.963;A|0.037	94
C22orf24	25775	bcgsc.ca	37	22	32334021	32334021	+	Missense_Mutation	SNP	T	T	A	rs1984388	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C22orf24	NM_015372	exon2	c.A32T	p.H11L	.	.	202	11	44	0	T|0.774;A|0.226	470
C22orf28	51493	bcgsc.ca	37	22	32788248	32788248	+	Silent	SNP	T	T	A	rs13110	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C22orf28	NM_014306	exon11	c.A1389T	p.S463S	.	.	122	6	43	0	T|0.963;A|0.037	90
C22orf28	51493	bcgsc.ca	37	22	32795641	32795641	+	Silent	SNP	C	C	T	rs5749426	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C22orf28	NM_014306	exon6	c.G603A	p.Q201Q	.	.	209	19	67	0	C|0.552;T|0.448	90
C22orf28	51493	bcgsc.ca	37	22	32802680	32802680	+	Silent	SNP	A	A	G	rs35003092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C22orf28	NM_014306	exon4	c.T309C	p.D103D	.	.	101	6	36	0	A|0.963;G|0.037	90
C22orf42	150297	bcgsc.ca	37	22	32554994	32554994	+	Missense_Mutation	SNP	G	G	A	rs79988797	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C22orf42	NM_001010859	exon1	c.C209T	p.P70L	.	.	380	12	199	0	G|0.985;A|0.015	92
C2	717	bcgsc.ca	37	6	31905130	31905130	+	Silent	SNP	G	G	A	rs1042663	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2	NM_000063	exon8	c.G1023A	p.A341A	.	.	216	7	72	0	G|0.891;A|0.109	92
C2CD2	25966	bcgsc.ca	37	21	43342111	43342111	+	Silent	SNP	G	G	A	rs61735797	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2CD2	NM_015500	exon3	c.C462T	p.Y154Y	.	.	90	7	35	0	A|0.061;C|0.001	91
C2CD3	26005	bcgsc.ca	37	11	73796683	73796683	+	Missense_Mutation	SNP	T	T	C	rs1095423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2CD3	NM_015531	exon21	c.A3890G	p.Y1297C	.	.	110	6	44	0	T|0.951;C|0.049	75
C2CD3	26005	bcgsc.ca	37	11	73814476	73814476	+	Silent	SNP	T	T	G	rs35477575	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2CD3	NM_015531	exon14	c.A2280C	p.A760A	.	.	367	22	197	0	T|0.951;G|0.049	75
C2CD3	26005	bcgsc.ca	37	11	73843937	73843937	+	Missense_Mutation	SNP	C	C	T	rs114314576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2CD3	NM_015531	exon7	c.G1169A	p.R390K	.	.	246	7	138	0	C|0.990;T|0.010	75
C2orf54	79919	bcgsc.ca	37	2	241828041	241828041	+	Missense_Mutation	SNP	G	G	A	rs79425680		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf54	NM_001085437	exon4	c.C919T	p.L307F	.	.	85	7	31	0	G|0.996;A|0.004	90
C2orf61	285051	bcgsc.ca	37	2	47380145	47380145	+	Missense_Mutation	SNP	T	T	C	rs17036300	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf61	NM_173649	exon2	c.A92G	p.Q31R	.	.	105	5	52	0	T|0.866;C|0.134	68
C2orf71	388939	bcgsc.ca	37	2	29295016	29295016	+	Silent	SNP	A	A	G	rs10200693	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf71	NM_001029883	exon1	c.T2112C	p.N704N	.	.	260	20	75	0	A|0.661;G|0.339	91
C2orf71	388939	bcgsc.ca	37	2	29295676	29295676	+	Silent	SNP	G	G	A	rs13385188	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf71	NM_001029883	exon1	c.C1452T	p.S484S	.	.	340	18	108	0	G|0.668;A|0.332	91
C2orf71	388939	bcgsc.ca	37	2	29295866	29295866	+	Missense_Mutation	SNP	T	T	C	rs17007544	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf71	NM_001029883	exon1	c.A1262G	p.K421R	.	.	137	8	69	0	T|0.899;C|0.101	91
C2orf71	388939	bcgsc.ca	37	2	29296762	29296762	+	Silent	SNP	A	A	G	rs17007546	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf71	NM_001029883	exon1	c.T366C	p.H122H	.	.	726	23	321	0	A|0.993;G|0.007	91
C2orf73	129852	ucsc.edu;bcgsc.ca	37	2	54587378	54587378	+	Silent	SNP	C	C	G	rs2280717	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001100396	exon5	c.C543G	p.G181G	.	.	138	17	59	0	C|0.888;G|0.112	.
C2orf74	339804	bcgsc.ca	37	2	61389737	61389737	+	Missense_Mutation	SNP	T	T	G	rs1729674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001143959	exon1	c.T109G	p.Y37D	.	.	400	18	103	0	T|0.583;G|0.417	.
C2orf76	130355	bcgsc.ca	37	2	120060082	120060082	+	Missense_Mutation	SNP	T	T	C	rs1052500	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf76	NM_001017927	exon7	c.A347G	p.K116R	.	.	438	32	179	0	T|0.336;C|0.664	90
C2orf76	130355	bcgsc.ca	37	2	120078778	120078778	+	Missense_Mutation	SNP	T	T	C	rs6542522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf76	NM_001017927	exon4	c.A136G	p.I46V	.	.	650	25	309	0	C|0.645;N|0.001	90
C2orf81	388963	bcgsc.ca	37	2	74641624	74641624	+	Silent	SNP	G	G	C	rs2240444	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145054	exon4	c.C1599G	p.P533P	.	.	177	10	54	1	G|0.509;C|0.491	.
C2orf83	56918	bcgsc.ca	37	2	228493211	228493211	+	Missense_Mutation	SNP	G	G	A	rs28739019	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C2orf83	NM_020161	exon2	c.C134T	p.S45L	.	.	271	14	90	0	G|0.709;A|0.291	90
C3	718	bcgsc.ca	37	19	6697436	6697436	+	Silent	SNP	G	G	A	rs2230208	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3	NM_000064	exon21	c.C2715T	p.T905T	.	.	146	5	50	0	G|0.951;A|0.049	95
C3orf17	25871	bcgsc.ca	37	3	112724661	112724661	+	Missense_Mutation	SNP	T	T	C	rs3732813	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf17	NM_015412	exon9	c.A1426G	p.T476A	.	.	311	8	124	0	T|0.929;C|0.071	90
C3orf17	25871	bcgsc.ca	37	3	112727199	112727199	+	Missense_Mutation	SNP	G	G	A	rs2306858	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf17	NM_015412	exon8	c.C1054T	p.P352S	.	.	185	6	76	0	G|0.929;A|0.071	90
C3orf33	285315	bcgsc.ca	37	3	155481609	155481609	+	Silent	SNP	G	G	A	rs7653384	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf33	NM_173657	exon6	c.C453T	p.Y151Y	.	.	338	13	142	0	G|0.508;A|0.492	90
C3orf35	339883	bcgsc.ca	37	3	37476427	37476427	+	Missense_Mutation	SNP	C	C	T	rs17266511	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf35	NM_178339	exon6	c.C319T	p.H107Y	.	.	242	9	71	0	C|0.933;T|0.067	112
C3orf36	80111	bcgsc.ca	37	3	133647493	133647493	+	Missense_Mutation	SNP	G	G	C	rs76311816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf36	NM_025041	exon1	c.C155G	p.T52R	.	.	118	5	47	0	G|0.976;C|0.024	91
C3orf37	56941	hgsc.bcm.edu;bcgsc.ca	37	3	129020853	129020853	+	Silent	SNP	C	C	T	rs114999931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf37	NM_020187	exon6	c.C696T	p.V232V	.	.	156	11	59	0	C|0.990;T|0.010	91
C3orf43	255798	bcgsc.ca	37	3	196236533	196236533	+	Missense_Mutation	SNP	G	G	A	rs9869292	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf43	NM_001077657	exon2	c.C58T	p.H20Y	.	.	462	16	205	0	G|0.921;A|0.079	23
C3orf52	79669	bcgsc.ca	37	3	111821747	111821747	+	Missense_Mutation	SNP	A	A	G	rs16859190	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001171747	exon3	c.A331G	p.I111V	.	.	291	11	70	0	A|0.894;G|0.106	.
C3orf62	375341	bcgsc.ca	37	3	49314128	49314128	+	Missense_Mutation	SNP	C	C	T	rs61749312	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3orf62	NM_198562	exon1	c.G178A	p.V60M	.	.	162	6	61	0	C|0.973;T|0.027	90
C3orf79	152118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	153220258	153220258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001101337	exon3	c.C290A	p.A97D	.	.	109	36	53	0	.	.
C3P1	388503	bcgsc.ca	37	19	10157470	10157470	+	RNA	SNP	C	C	T	rs142999843	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C3P1	.	.	.	.	.	.	161	6	39	0	C|0.999;T|0.001	90
C4BPB	725	bcgsc.ca	37	1	207269919	207269919	+	Silent	SNP	C	C	T	rs8942	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C4BPB	NM_001017365	exon5	c.C462T	p.N154N	.	.	139	7	50	0	C|0.623;T|0.377	91
C4orf19	55286	bcgsc.ca	37	4	37592128	37592128	+	Missense_Mutation	SNP	G	G	A	rs2973275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C4orf19	NM_018302	exon3	c.G451A	p.A151T	.	.	114	8	46	0	G|0.830;A|0.170	90
C4orf22	255119	bcgsc.ca	37	4	81504336	81504336	+	Missense_Mutation	SNP	G	G	A	rs77136026	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C4orf22	NM_152770	exon3	c.G332A	p.S111N	.	.	202	7	93	0	G|0.992;A|0.008	93
C4orf40	401137	bcgsc.ca	37	4	71024099	71024099	+	Missense_Mutation	SNP	A	A	G	rs1612460	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C4orf40	NM_214711	exon3	c.A130G	p.I44V	.	.	149	6	59	0	A|0.927;C|0.007;G|0.066	68
C4orf6	10141	bcgsc.ca	37	4	5527105	5527105	+	Silent	SNP	A	A	G	rs113971480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C4orf6	NM_005750	exon1	c.A48G	p.Q16Q	.	.	218	8	113	0	A|0.978;G|0.022	90
C5	727	bcgsc.ca	37	9	123725971	123725971	+	Silent	SNP	C	C	T	rs12237774	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5	NM_001735	exon34	c.G4266A	p.A1422A	.	.	378	14	154	0	C|0.914;T|0.086	92
C5orf34	375444	bcgsc.ca	37	5	43505993	43505993	+	Silent	SNP	A	A	G	rs7710628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5orf34	NM_198566	exon4	c.T789C	p.N263N	.	.	198	15	78	0	A|0.526;G|0.474	153
C5orf42	65250	bcgsc.ca	37	5	37170178	37170178	+	Missense_Mutation	SNP	T	T	C	rs6884652	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5orf42	NM_023073	exon33	c.A6427G	p.I2143V	.	.	348	10	148	0	T|0.947;C|0.053	94
C5orf46	389336	bcgsc.ca	37	5	147281308	147281308	+	Silent	SNP	C	C	T	rs11956228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5orf46	NM_206966	exon2	c.G99A	p.K33K	.	.	984	41	371	0	C|0.922;T|0.078	90
C5orf46	389336	bcgsc.ca	37	5	147286013	147286013	+	Missense_Mutation	SNP	A	A	T	rs7722926	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5orf46	NM_206966	exon1	c.T52A	p.F18I	.	.	389	25	162	0	A|0.710;T|0.290	90
C5orf56	441108	bcgsc.ca	37	5	131805735	131805735	+	RNA	SNP	C	C	T	rs2706379	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5orf56	.	.	.	.	.	.	537	23	168	0	C|0.735;T|0.265	90
C5orf56	441108	ucsc.edu	37	5	131811435	131811435	+	RNA	SNP	C	C	T	rs11547300	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C5orf56	.	.	.	.	.	.	62	5	24	0	C|0.976;T|0.024	90
C5orf60	285679	bcgsc.ca	37	5	179071947	179071947	+	Silent	SNP	A	A	G	rs4645306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001142306	exon1	c.T75C	p.I25I	.	.	235	16	88	0	A|0.743;G|0.257	.
C5orf64	285668	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60982841	60982841	+	Missense_Mutation	SNP	G	G	A	rs16893687	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173667	exon3	c.G169A	p.A57T	.	.	256	29	138	0	G|0.540;A|0.460	.
C6	729	bcgsc.ca	37	5	41160293	41160293	+	Silent	SNP	A	A	G	rs62361567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6	NM_001115131	exon11	c.T1635C	p.S545S	.	.	214	11	73	0	A|0.978;G|0.022	95
C6orf10	10665	bcgsc.ca	37	6	32261014	32261014	+	Missense_Mutation	SNP	C	C	A	rs7751028	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf10	.	.	.	.	.	.	515	34	199	0	C|0.957;A|0.043	91
C6orf10	10665	bcgsc.ca	37	6	32261158	32261158	+	Missense_Mutation	SNP	G	G	C	rs114543649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf10	.	.	.	.	.	.	276	15	117	0	G|0.957;C|0.043	91
C6orf10	10665	bcgsc.ca	37	6	32261507	32261507	+	Missense_Mutation	SNP	T	T	C	rs3749966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf10	.	.	.	.	.	.	802	46	334	0	T|0.744;C|0.256	91
C6orf10	10665	bcgsc.ca	37	6	32261653	32261653	+	Missense_Mutation	SNP	A	A	C	rs4947338	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf10	.	.	.	.	.	.	1240	75	445	0	A|0.956;C|0.044	91
C6orf10	10665	bcgsc.ca;mdanderson.org	37	6	32261291	32261291	+	Missense_Mutation	SNP	G	G	C	rs61995678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf10	.	.	.	.	.	.	472	40	196	0	G|0.950;C|0.050	91
C6orf118	168090	bcgsc.ca	37	6	165715673	165715673	+	Silent	SNP	A	A	G	rs9459356	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf118	NM_144980	exon2	c.T138C	p.N46N	.	.	222	9	88	0	A|0.802;G|0.198	90
C6orf15	29113	bcgsc.ca	37	6	31079703	31079703	+	Missense_Mutation	SNP	C	C	G	rs2233978	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf15	NM_014070	exon2	c.G433C	p.A145P	.	.	99	7	48	0	C|0.699;G|0.301	90
C6orf15	29113	bcgsc.ca	37	6	31079889	31079889	+	Missense_Mutation	SNP	C	C	G	rs1265053	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf15	NM_014070	exon2	c.G247C	p.A83P	.	.	118	11	37	0	C|0.481;G|0.519	90
C6orf15	29113	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31079236	31079236	+	Silent	SNP	G	G	A	rs1265055	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf15	NM_014070	exon2	c.C900T	p.V300V	.	.	155	20	34	0	G|0.484;A|0.516	90
C6orf170	221322	bcgsc.ca	37	6	121642851	121642851	+	Missense_Mutation	SNP	C	C	T	rs7767455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf170	NM_152730	exon2	c.G245A	p.R82Q	.	.	427	28	139	0	C|0.826;T|0.174	92
C6orf211	79624	bcgsc.ca	37	6	151789912	151789912	+	Silent	SNP	C	C	T	rs9397054	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf211	NM_024573	exon5	c.C993T	p.H331H	.	.	175	6	99	1	C|0.855;T|0.145	90
C6orf58	352999	bcgsc.ca	37	6	127912696	127912696	+	Missense_Mutation	SNP	T	T	G	rs9491833	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C6orf58	NM_001010905	exon6	c.T922G	p.C308G	.	.	308	8	103	0	T|0.977;G|0.023	90
C7orf26	79034	bcgsc.ca	37	7	6631414	6631414	+	Silent	SNP	G	G	T	rs10260097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C7orf26	NM_024067	exon2	c.G330T	p.R110R	.	.	190	7	54	0	G|0.981;T|0.019	91
C7orf62	219557	bcgsc.ca	37	7	88423881	88423881	+	Missense_Mutation	SNP	T	T	C	rs2293583	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C7orf62	NM_152706	exon2	c.A376G	p.I126V	.	.	190	8	98	0	T|0.902;C|0.098	91
C8orf22	492307	bcgsc.ca	37	8	49985395	49985395	+	Silent	SNP	A	A	C	rs6980664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001256598	exon2	c.A6C	p.A2A	.	.	431	9	51	0	A|0.968;C|0.032	.
C8orf34	116328	bcgsc.ca	37	8	69699756	69699756	+	Missense_Mutation	SNP	G	G	A	rs16935065	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C8orf34	NM_052958	exon12	c.G1534A	p.A512T	.	.	464	13	105	0	G|0.813;A|0.187	153
C8orf42	157695	bcgsc.ca	37	8	442599	442599	+	Missense_Mutation	SNP	A	A	C	rs114134672	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_175075	exon4	c.T358G	p.S120A	.	.	151	8	115	0	A|0.982;C|0.018	.
C8orf74	203076	ucsc.edu;bcgsc.ca	37	8	10557760	10557760	+	Missense_Mutation	SNP	A	A	G	rs57041981	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001040032	exon4	c.A664G	p.I222V	.	.	71	7	33	0	A|0.822;G|0.178	.
C8orf86	389649	bcgsc.ca	37	8	38385914	38385914	+	Missense_Mutation	SNP	C	C	T	rs1378332	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C8orf86	NM_207412	exon1	c.G242A	p.R81H	.	.	101	8	73	0	C|0.885;T|0.115	90
C9	735	bcgsc.ca	37	5	39288844	39288844	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C9	NM_001737	exon10	c.T1626C	p.S542S	.	.	314	11	142	1	.	90
C9orf117	286207	bcgsc.ca	37	9	130473535	130473535	+	Silent	SNP	G	G	A	rs61317214	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C9orf117	NM_001012502	exon4	c.G615A	p.V205V	.	.	94	7	51	0	G|0.988;A|0.012	90
C9orf153	389766	bcgsc.ca	37	9	88842804	88842804	+	Missense_Mutation	SNP	C	C	T	rs73650939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C9orf153	NM_001276368	exon4	c.G208A	p.A70T	.	.	257	11	97	0	C|0.936;T|0.064	90
C9orf37	85026	hgsc.bcm.edu;bcgsc.ca	37	9	140510427	140510427	+	Silent	SNP	C	C	T	rs146719588	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C9orf37	NM_032937	exon3	c.G225A	p.P75P	.	.	147	8	54	0	C|0.997;T|0.003	135
C9orf84	158401	bcgsc.ca	37	9	114476748	114476748	+	Missense_Mutation	SNP	T	T	A	rs11791445	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C9orf84	NM_173521	exon15	c.A2200T	p.M734L	.	.	488	18	198	0	T|0.809;A|0.191	92
C9orf84	158401	bcgsc.ca	37	9	114490229	114490229	+	Silent	SNP	T	T	G	rs10512411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	C9orf84	NM_173521	exon11	c.A1326C	p.A442A	.	.	308	20	147	0	T|0.852;G|0.148	92
CA12	771	bcgsc.ca	37	15	63638749	63638749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CA12	NM_206925	exon3	c.T266C	p.L89P	.	.	153	6	60	0	.	515
CA2	760	bcgsc.ca	37	8	86389403	86389403	+	Silent	SNP	T	T	C	rs703	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CA2	NM_000067	exon6	c.T562C	p.L188L	.	.	659	23	111	0	T|0.376;C|0.624	90
CA5B	11238	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15800751	15800751	+	Silent	SNP	G	G	A	rs1808	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CA5B	NM_007220	exon8	c.G918A	p.A306A	.	.	134	26	61	0	0|0.003;T|0.074	130
CA6	765	bcgsc.ca	37	1	9005975	9005975	+	Silent	SNP	G	G	A	rs34649225	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CA6	NM_001270501	exon1	c.G30A	p.L10L	.	.	112	7	47	0	G|0.941;A|0.059	516
CA6	765	bcgsc.ca	37	1	9009352	9009352	+	Missense_Mutation	SNP	A	A	T	rs34265054	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CA6	NM_001215	exon2	c.A110T	p.Q37L	.	.	44	6	28	0	A|0.944;T|0.056	516
CA6	765	bcgsc.ca	37	1	9034717	9034717	+	Missense_Mutation	SNP	A	A	G	rs61749464	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CA6	NM_001215	exon8	c.A881G	p.H294R	.	.	87	7	45	0	A|0.999;G|0.001	516
CAAP1	79886	bcgsc.ca	37	9	26842506	26842506	+	Silent	SNP	G	G	A	rs10967558	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024828	exon6	c.C879T	p.D293D	.	.	279	19	149	0	G|0.941;A|0.059	.
CAAP1	79886	bcgsc.ca	37	9	26861106	26861106	+	Missense_Mutation	SNP	C	C	T	rs12342214	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024828	exon5	c.G697A	p.V233M	.	.	249	11	124	0	C|0.939;T|0.061	.
CABLES1	91768	bcgsc.ca	37	18	20815888	20815888	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CABLES1	NM_001100619	exon6	c.C1215T	p.P405P	.	.	339	11	177	0	.	522
CABP5	56344	bcgsc.ca	37	19	48543923	48543923	+	Silent	SNP	C	C	A	rs12982629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CABP5	NM_019855	exon3	c.G177T	p.T59T	.	.	154	6	57	0	C|0.798;A|0.202	91
CABP5	56344	bcgsc.ca	37	19	48544837	48544837	+	Silent	SNP	C	C	T	rs35535557	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CABP5	NM_019855	exon2	c.G87A	p.E29E	.	.	280	12	91	0	C|0.929;T|0.071	91
CABP7	164633	bcgsc.ca	37	22	30125169	30125169	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CABP7	NM_182527	exon4	c.A492G	p.T164T	.	.	130	5	69	0	.	90
CACHD1	57685	bcgsc.ca	37	1	65147002	65147002	+	Silent	SNP	C	C	T	rs3828064	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACHD1	NM_020925	exon25	c.C3315T	p.H1105H	.	.	239	9	116	0	C|0.900;T|0.100	92
CACNA1B	774	bcgsc.ca	37	9	140952690	140952690	+	Silent	SNP	G	G	A	rs2229950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1B	NM_001243812	exon28	c.G4296A	p.L1432L	.	.	166	10	88	0	G|0.843;A|0.157	138
CACNA1B	774	bcgsc.ca	37	9	141012432	141012432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1B	NM_001243812	exon42	c.T5812C	p.S1938P	.	.	288	9	76	0	.	138
CACNA1E	777	bcgsc.ca	37	1	181725110	181725110	+	Silent	SNP	T	T	C	rs4652678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1E	NM_001205293	exon29	c.T4008C	p.H1336H	.	.	152	12	54	0	T|0.709;C|0.291	95
CACNA1E	777	bcgsc.ca	37	1	181741301	181741301	+	Silent	SNP	C	C	T	rs199930	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1E	NM_001205293	exon37	c.C5073T	p.N1691N	.	.	704	39	192	2	C|0.788;N|0.000	95
CACNA1F	778	bcgsc.ca	37	X	49071964	49071964	+	Silent	SNP	A	A	G	rs2075866	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1F	NM_005183	exon28	c.T3309C	p.H1103H	.	.	126	8	36	0	0|0.014;T|0.088	176
CACNA1G	8913	bcgsc.ca	37	17	48653354	48653354	+	Silent	SNP	C	C	A	rs12449998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1G	NM_001256360	exon8	c.C1591A	p.R531R	.	.	93	8	38	0	C|0.470;A|0.530	67
CACNA1S	779	bcgsc.ca	37	1	201012484	201012484	+	Missense_Mutation	SNP	C	C	T	rs13374149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1S	NM_000069	exon40	c.G4973A	p.R1658H	.	.	249	12	64	0	C|0.890;T|0.110	94
CACNA1S	779	bcgsc.ca	37	1	201047078	201047078	+	Silent	SNP	C	C	T	rs16847669	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNA1S	NM_000069	exon11	c.G1548A	p.S516S	.	.	161	7	60	0	C|0.975;T|0.025	94
CACNB2	783	bcgsc.ca	37	10	18828371	18828371	+	Silent	SNP	C	C	T	rs2228645	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNB2	NM_201596	exon14	c.C1701T	p.Y567Y	.	.	122	8	72	0	C|0.810;T|0.190	154
CACNB2	783	hgsc.bcm.edu;bcgsc.ca	37	10	18828455	18828455	+	Silent	SNP	C	C	T	rs61733967	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNB2	NM_201596	exon14	c.C1785T	p.H595H	.	.	122	7	71	0	C|0.988;T|0.012	154
CACNG4	27092	bcgsc.ca	37	17	65026633	65026633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CACNG4	NM_014405	exon4	c.A497G	p.D166G	.	.	149	5	56	0	.	90
CADPS	8618	bcgsc.ca	37	3	62631482	62631482	+	Missense_Mutation	SNP	C	C	A	rs142795732	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CADPS	NM_003716	exon6	c.G1240T	p.A414S	.	.	294	11	105	0	C|0.998;A|0.002	281
CALCB	797	bcgsc.ca	37	11	15096655	15096655	+	Silent	SNP	C	C	T	rs61736643	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CALCB	NM_000728	exon3	c.C135T	p.D45D	.	.	360	13	121	0	C|0.989;T|0.011	90
CALCOCO1	57658	hgsc.bcm.edu;bcgsc.ca	37	12	54109000	54109000	+	Missense_Mutation	SNP	T	T	C	rs34311341	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CALCOCO1	NM_020898	exon10	c.A1370G	p.E457G	.	.	223	15	64	0	T|0.997;C|0.003	91
CALCOCO2	10241	bcgsc.ca	37	17	46926649	46926649	+	Silent	SNP	G	G	A	rs111607416	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CALCOCO2	NM_001261390	exon6	c.G525A	p.E175E	.	.	261	8	95	0	G|0.996;A|0.004	91
CALCOCO2	10241	bcgsc.ca	37	17	46929908	46929908	+	Missense_Mutation	SNP	T	T	C	rs2303015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CALCOCO2	NM_001261390	exon9	c.T815C	p.V272A	.	.	548	17	239	1	T|0.686;G|0.026	91
CALU	813	bcgsc.ca	37	7	128388648	128388648	+	Missense_Mutation	SNP	G	G	A	rs2290228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CALU	NM_001199671	exon3	c.G35A	p.R12Q	.	.	150	7	55	0	G|0.841;A|0.159	90
CAMK1G	57172	bcgsc.ca	37	1	209785206	209785206	+	Missense_Mutation	SNP	G	G	A	rs11119315	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAMK1G	NM_020439	exon11	c.G985A	p.V329I	.	.	78	7	34	0	G|0.792;A|0.208	389
CAMK2A	815	bcgsc.ca	37	5	149631583	149631583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAMK2A	NM_171825	exon8	c.A560G	p.K187R	.	.	196	6	76	0	.	333
CAMKK2	10645	bcgsc.ca	37	12	121691130	121691130	+	Silent	SNP	G	G	A	rs56131600	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAMKK2	NM_153500	exon10	c.C1053T	p.P351P	.	.	201	7	60	1	A|0.029;G|0.971	450
CAMSAP3	57662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7675999	7675999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080429	exon11	c.C1149G	p.F383L	.	.	153	41	27	0	.	.
CAMTA1	23261	bcgsc.ca	37	1	6885234	6885234	+	Silent	SNP	T	T	C	rs141738594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAMTA1	NM_015215	exon3	c.T198C	p.S66S	.	.	246	10	98	0	T|0.999;C|0.001	520
CAND2	23066	bcgsc.ca	37	3	12848946	12848946	+	Silent	SNP	T	T	C	rs62637648	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAND2	NM_001162499	exon3	c.T354C	p.P118P	.	.	113	9	31	0	T|0.971;C|0.029	72
CAND2	23066	bcgsc.ca	37	3	12857920	12857920	+	Missense_Mutation	SNP	A	A	G	rs9834623	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAND2	NM_001162499	exon10	c.A1489G	p.M497V	.	.	160	10	62	1	A|0.972;G|0.028	72
CAND2	23066	bcgsc.ca	37	3	12858028	12858028	+	Missense_Mutation	SNP	T	T	C	rs3732675	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAND2	NM_001162499	exon10	c.T1597C	p.S533P	.	.	125	7	48	0	C|0.609;G|0.000;T|0.391	72
CAND2	23066	bcgsc.ca	37	3	12859004	12859004	+	Missense_Mutation	SNP	A	A	C	rs3732678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAND2	NM_001162499	exon10	c.A2573C	p.H858P	.	.	101	8	39	0	A|0.402;C|0.597;G|0.000	72
CAP2	10486	bcgsc.ca	37	6	17543187	17543187	+	Silent	SNP	A	A	C	rs28360582	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAP2	NM_006366	exon10	c.A1122C	p.I374I	.	.	239	7	86	0	A|0.962;C|0.038	91
CAPN11	11131	bcgsc.ca	37	6	44151490	44151490	+	Missense_Mutation	SNP	G	G	A	rs7761137	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN11	NM_007058	exon22	c.G2183A	p.S728N	.	.	267	10	53	0	G|0.721;A|0.279	136
CAPN12	147968	bcgsc.ca	37	19	39228244	39228244	+	Missense_Mutation	SNP	T	T	C	rs73038948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN12	NM_144691	exon9	c.A1000G	p.T334A	.	.	220	8	83	0	T|0.867;C|0.133	91
CAPN14	440854	bcgsc.ca	37	2	31410653	31410653	+	Missense_Mutation	SNP	C	C	T	rs7422120	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145122	exon15	c.G1558A	p.D520N	.	.	245	12	94	1	C|0.732;T|0.268	.
CAPN14	440854	bcgsc.ca	37	2	31428191	31428191	+	Silent	SNP	G	G	A	rs79600252	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145122	exon2	c.C123T	p.G41G	.	.	228	8	53	0	G|0.990;A|0.010	.
CAPN1	823	bcgsc.ca	37	11	64950664	64950664	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN1	NM_001198869	exon3	c.A333G	p.A111A	.	.	62	4	33	0	.	91
CAPN2	824	bcgsc.ca	37	1	223933079	223933079	+	Silent	SNP	C	C	T	rs17598	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN2	NM_001748	exon4	c.C498T	p.L166L	.	.	105	5	28	0	C|0.742;T|0.258	523
CAPN3	825	bcgsc.ca	37	15	42680058	42680058	+	Silent	SNP	T	T	C	rs17593	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN3	NM_000070	exon4	c.T606C	p.S202S	.	.	220	11	75	0	T|0.944;C|0.056	514
CAPN3	825	bcgsc.ca	37	15	42681199	42681199	+	Missense_Mutation	SNP	G	G	A	rs1801449	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN3	NM_000070	exon5	c.G706A	p.A236T	.	.	199	11	74	0	G|0.759;A|0.241	514
CAPN9	10753	bcgsc.ca	37	1	230910339	230910339	+	Silent	SNP	G	G	A	rs7517389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPN9	NM_006615	exon8	c.G915A	p.K305K	.	.	629	47	223	0	G|0.936;A|0.064	91
CAPRIN2	65981	bcgsc.ca	37	12	30881809	30881809	+	Missense_Mutation	SNP	T	T	C	rs2304630	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPRIN2	NM_023925	exon8	c.A1555G	p.M519V	.	.	767	51	252	3	T|0.384;C|0.616	92
CAPSL	133690	bcgsc.ca	37	5	35910529	35910529	+	Missense_Mutation	SNP	C	C	T	rs1445898	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPSL	NM_144647	exon3	c.G254A	p.R85Q	.	.	274	10	146	0	C|0.556;T|0.444	91
CAPZA2	830	bcgsc.ca	37	7	116528240	116528240	+	Silent	SNP	C	C	T	rs4808	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CAPZA2	NM_006136	exon2	c.C99T	p.F33F	.	.	131	9	48	0	C|0.707;T|0.293	514
CARD10	29775	bcgsc.ca	37	22	37902235	37902235	+	Silent	SNP	A	A	C	rs61742320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD10	NM_014550	exon7	c.T1347G	p.V449V	.	.	122	18	30	0	A|0.930;C|0.070	662
CARD11	84433	bcgsc.ca	37	7	2969689	2969689	+	Missense_Mutation	SNP	T	T	G	rs41515445	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD11	NM_032415	exon12	c.A1590C	p.E530D	.	.	105	6	29	0	T|0.972;G|0.028	870
CARD11	84433	bcgsc.ca	37	7	2974165	2974165	+	Silent	SNP	C	C	T	rs41396348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD11	NM_032415	exon10	c.G1440A	p.S480S	.	.	254	8	62	0	C|0.932;T|0.068	870
CARD16	114769	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104912221	104912221	+	Missense_Mutation	SNP	T	T	A	rs542571	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD16	NM_001017534	exon3	c.A500T	p.N167I	.	.	118	16	81	0	T|0.776;A|0.224	228
CARD17	440068	bcgsc.ca	37	11	104971362	104971362	+	Missense_Mutation	SNP	A	A	G	rs115239439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD17	NM_001007232	exon2	c.T152C	p.M51T	.	.	317	15	151	0	A|0.981;G|0.019	45
CARD17	440068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104971273	104971273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD17	NM_001007232	exon2	c.A241G	p.S81G	.	.	254	92	96	0	.	45
CARD8	22900	bcgsc.ca	37	19	48733756	48733756	+	Missense_Mutation	SNP	G	G	C	rs73573000	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARD8	NM_001184900	exon7	c.C974G	p.P325R	.	.	167	12	33	0	G|0.961;C|0.039	227
CARNS1	57571	ucsc.edu;bcgsc.ca	37	11	67191449	67191449	+	Silent	SNP	T	T	C	rs1790747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARNS1	NM_001166222	exon10	c.T2230C	p.L744L	.	.	92	10	32	0	T|0.648;C|0.352	46
CARS2	79587	bcgsc.ca	37	13	111298392	111298392	+	Silent	SNP	A	A	G	rs436462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CARS2	NM_024537	exon12	c.T1239C	p.D413D	.	.	78	5	37	0	A|0.580;G|0.420	90
CASC5	57082	bcgsc.ca	37	15	40914772	40914772	+	Silent	SNP	C	C	T	rs11855334	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASC5	NM_170589	exon11	c.C2388T	p.V796V	.	.	245	17	119	0	C|0.632;T|0.368	660
CASC5	57082	bcgsc.ca	37	15	40915045	40915045	+	Silent	SNP	T	T	G	rs8041534	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASC5	NM_170589	exon11	c.T2661G	p.T887T	.	.	270	7	186	0	T|0.633;G|0.367	660
CASC5	57082	bcgsc.ca	37	15	40915894	40915894	+	Silent	SNP	T	T	C	rs11070285	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASC5	NM_170589	exon11	c.T3510C	p.N1170N	.	.	199	12	106	0	T|0.632;C|0.368	660
CASP1	834	bcgsc.ca	37	11	104900488	104900488	+	Silent	SNP	G	G	A	rs580253	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP1	NM_001257118	exon6	c.C766T	p.L256L	.	.	315	15	161	2	G|0.868;A|0.132	661
CASP1	834	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104905047	104905047	+	Silent	SNP	G	G	A	rs55646419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP1	NM_001257119	exon2	c.C162T	p.T54T	.	.	447	54	250	0	G|0.719;A|0.281	661
CASP4	837	bcgsc.ca	37	11	104825597	104825597	+	Missense_Mutation	SNP	C	C	T	rs56226603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP4	NM_001225	exon2	c.G139A	p.D47N	.	.	470	10	206	0	C|0.969;T|0.031	660
CASP5	838	bcgsc.ca	37	11	104872823	104872823	+	Missense_Mutation	SNP	C	C	G	rs3181326	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP5	NM_001136112	exon5	c.G688C	p.V230L	.	.	372	14	100	1	C|0.733;G|0.267	661
CASP5	838	bcgsc.ca	37	11	104879628	104879628	+	Missense_Mutation	SNP	G	G	C	rs3181320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP5	NM_001136112	exon2	c.C126G	p.F42L	.	.	249	12	107	0	G|0.560;C|0.440	661
CASP5	838	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104877927	104877927	+	Missense_Mutation	SNP	T	T	C	rs507879	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP5	NM_001136112	exon3	c.A355G	p.T119A	.	.	165	23	70	0	T|0.421;G|0.089	661
CASP7	840	bcgsc.ca	37	10	115489152	115489152	+	Missense_Mutation	SNP	C	C	G	rs2227310	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP7	NM_001267057	exon7	c.C1020G	p.D340E	.	.	93	6	30	0	C|0.761;G|0.239	660
CASP7	840	bcgsc.ca	37	10	115489167	115489167	+	Missense_Mutation	SNP	G	G	A	rs2227309	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP7	NM_033340	exon8	c.G746A	p.R249K	.	.	91	4	32	0	G|0.760;A|0.240	660
CASP8AP2	9994	bcgsc.ca	37	6	90565242	90565242	+	Silent	SNP	A	A	G	rs369328	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CASP8AP2	NM_001137667	exon5	c.A279G	p.K93K	.	.	269	21	129	0	G|0.396;N|0.000	24
CATSPER1	117144	bcgsc.ca	37	11	65787666	65787666	+	Silent	SNP	G	G	A	rs3829937	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CATSPER1	NM_053054	exon9	c.C2070T	p.A690A	.	.	143	9	48	0	G|0.834;A|0.166	92
CATSPER1	117144	bcgsc.ca	37	11	65793454	65793454	+	Missense_Mutation	SNP	C	C	T	rs1203998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CATSPER1	NM_053054	exon1	c.G397A	p.G133S	.	.	81	6	35	0	C|0.657;T|0.343	92
CATSPER2	117155	bcgsc.ca	37	15	43939642	43939642	+	Missense_Mutation	SNP	C	C	T	rs8042868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CATSPER2	NM_172097	exon3	c.G169A	p.V57I	.	.	344	29	142	1	C|0.822;T|0.178	91
CATSPER3	347732	bcgsc.ca	37	5	134343799	134343799	+	Silent	SNP	A	A	G	rs177252	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CATSPER3	NM_178019	exon4	c.A645G	p.A215A	.	.	329	11	90	0	A|0.561;G|0.439	91
CBFA2T2	9139	bcgsc.ca	37	20	32212690	32212690	+	Silent	SNP	C	C	T	rs3803939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CBFA2T2	NM_005093	exon7	c.C840T	p.P280P	.	.	138	11	44	0	T|0.488;G|0.070;C|0.303;N|0.000;A|0.139	92
CBFA2T3	863	bcgsc.ca	37	16	88945738	88945738	+	Silent	SNP	C	C	T	rs79678180	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CBFA2T3,colon,carcinoma,-1	CBFA2T3	NM_005187	exon11	c.G1602A	p.A534A	.	.	71	5	28	0	C|0.990;T|0.010	722
CBFA2T3	863	bcgsc.ca	37	16	88958850	88958850	+	Silent	SNP	T	T	C	rs522517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CBFA2T3	NM_005187	exon4	c.A423G	p.A141A	.	.	105	7	53	0	T|0.947;C|0.053	722
CBR3	874	bcgsc.ca	37	21	37510224	37510224	+	Missense_Mutation	SNP	C	C	T	rs16993929	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CBR3	NM_001236	exon2	c.C391T	p.P131S	.	.	95	7	57	0	C|0.955;T|0.045	90
CBX7	23492	bcgsc.ca	37	22	39530477	39530477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CBX7	NM_175709	exon5	c.A527G	p.E176G	.	.	74	4	38	0	.	227
CC2D1B	200014	hgsc.bcm.edu	37	1	52826157	52826157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CC2D1B	NM_032449	exon6	c.C542T	p.A181V	.	.	115	10	55	0	.	92
CCDC104	112942	bcgsc.ca	37	2	55771169	55771169	+	Missense_Mutation	SNP	A	A	T	rs1045920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC104	NM_080667	exon8	c.A736T	p.I246F	.	.	270	21	128	0	A|0.870;T|0.130	91
CCDC108	255101	ucsc.edu	37	2	219878756	219878756	+	Missense_Mutation	SNP	G	G	A	rs9967806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC108	NM_194302	exon22	c.C3613T	p.L1205F	.	.	75	8	22	0	G|0.799;A|0.201	94
CCDC109B	55013	bcgsc.ca	37	4	110581363	110581363	+	Missense_Mutation	SNP	T	T	A	rs4698744	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC109B	NM_017918	exon3	c.T188A	p.I63N	.	.	201	14	116	0	T|0.669;A|0.331	90
CCDC111	201973	bcgsc.ca	37	4	185615764	185615764	+	Missense_Mutation	SNP	C	C	A	rs14969	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC111	NM_152683	exon14	c.C1514A	p.T505K	.	.	321	16	109	0	C|0.824;A|0.176	90
CCDC111	201973	bcgsc.ca	37	4	185615768	185615768	+	Silent	SNP	T	T	G	rs3184982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC111	NM_152683	exon14	c.T1518G	p.G506G	.	.	320	16	109	1	T|0.822;G|0.178	90
CCDC112	153733	bcgsc.ca	37	5	114611201	114611201	+	Silent	SNP	T	T	C	rs35940728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC112	NM_001040440	exon6	c.A630G	p.K210K	.	.	361	12	141	1	T|0.982;C|0.018	90
CCDC11	220136	bcgsc.ca	37	18	47777244	47777244	+	Missense_Mutation	SNP	C	C	T	rs35193847	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC11	NM_145020	exon5	c.G880A	p.E294K	.	.	1128	50	414	0	C|0.739;T|0.261	93
CCDC120	90060	hgsc.bcm.edu;bcgsc.ca	37	X	48923034	48923034	+	Missense_Mutation	SNP	G	G	T	rs144506890	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC120	NM_001163321	exon8	c.G837T	p.K279N	.	.	195	15	50	0	G|0.997;T|0.003	131
CCDC121	79635	bcgsc.ca	37	2	27851348	27851348	+	Missense_Mutation	SNP	G	G	C	rs149819301	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC121	NM_001142683	exon1	c.C283G	p.P95A	.	.	135	8	59	0	G|0.993;C|0.007	68
CCDC121	79635	bcgsc.ca	37	2	27851460	27851460	+	Silent	SNP	C	C	T	rs60394995	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC121	NM_001142683	exon1	c.G171A	p.G57G	.	.	120	7	56	0	C|0.984;T|0.016	68
CCDC122	160857	bcgsc.ca	37	13	44411432	44411432	+	Missense_Mutation	SNP	A	A	G	rs9567280	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC122	NM_144974	exon7	c.T806C	p.I269T	.	.	553	26	162	0	A|0.943;G|0.057	90
CCDC132	55610	bcgsc.ca	37	7	92970847	92970847	+	Silent	SNP	C	C	T	rs2106432	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC132	NM_017667	exon23	c.C2167T	p.L723L	.	.	147	13	56	0	C|0.433;T|0.567	90
CCDC132	55610	bcgsc.ca	37	7	92985252	92985252	+	Silent	SNP	T	T	C	rs2374639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC132	NM_017667	exon27	c.T2635C	p.L879L	.	.	199	8	111	0	C|0.320;N|0.000	90
CCDC135	84229	bcgsc.ca	37	16	57762401	57762401	+	Missense_Mutation	SNP	T	T	C	rs2923147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC135	NM_032269	exon16	c.T2296C	p.C766R	.	.	126	9	68	0	T|0.627;C|0.373	90
CCDC138	165055	bcgsc.ca	37	2	109405421	109405421	+	Missense_Mutation	SNP	T	T	C	rs73952515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC138	NM_144978	exon3	c.T265C	p.C89R	.	.	168	9	51	0	T|0.983;C|0.017	90
CCDC141	285025	bcgsc.ca	37	2	179839833	179839833	+	Silent	SNP	A	A	G	rs10930846	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC141	NM_173648	exon4	c.T477C	p.S159S	.	.	141	8	38	0	A|0.652;G|0.348	78
CCDC144A	9720	bcgsc.ca	37	17	16612238	16612238	+	Missense_Mutation	SNP	C	C	A	rs9904955		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014695	exon5	c.C867A	p.N289K	.	.	1225	48	509	2	.	.
CCDC144A	9720	bcgsc.ca	37	17	16664991	16664991	+	Missense_Mutation	SNP	G	G	A	rs55685346		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014695	exon13	c.G3625A	p.E1209K	.	.	509	17	326	1	.	.
CCDC146	57639	bcgsc.ca	37	7	76916159	76916159	+	Silent	SNP	C	C	T	rs6967658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC146	NM_020879	exon16	c.C2193T	p.F731F	.	.	199	6	77	0	C|0.923;T|0.077	70
CCDC147	159686	bcgsc.ca	37	10	106152111	106152111	+	Missense_Mutation	SNP	T	T	A	rs11192036	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC147	NM_001008723	exon10	c.T1486A	p.S496T	.	.	130	8	67	0	T|0.767;A|0.233	71
CCDC148	130940	bcgsc.ca	37	2	159195282	159195282	+	Silent	SNP	C	C	T	rs16842890	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC148	NM_138803	exon7	c.G720A	p.Q240Q	.	.	239	12	87	0	C|0.803;T|0.197	70
CCDC148	130940	bcgsc.ca	37	2	159196771	159196771	+	Missense_Mutation	SNP	T	T	C	rs12620556	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC148	NM_138803	exon5	c.A469G	p.M157V	.	.	359	14	153	0	T|0.797;C|0.203	70
CCDC148	130940	bcgsc.ca	37	2	159214984	159214984	+	Missense_Mutation	SNP	C	C	G	rs148989150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC148	NM_138803	exon2	c.G124C	p.A42P	.	.	244	8	79	0	C|0.998;G|0.002	70
CCDC151	115948	bcgsc.ca	37	19	11545693	11545693	+	Missense_Mutation	SNP	T	T	G	rs61742088	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC151	NM_145045	exon1	c.A145C	p.T49P	.	.	105	7	29	0	T|0.987;G|0.013	91
CCDC159	126075	bcgsc.ca	37	19	11461486	11461486	+	Missense_Mutation	SNP	G	G	T	rs36097565	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC159	NM_001080503	exon5	c.G229T	p.V77L	.	.	141	7	52	0	G|0.929;T|0.071	23
CCDC160	347475	bcgsc.ca	37	X	133378997	133378997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC160	NM_001101357	exon2	c.A167G	p.Q56R	.	.	129	5	76	0	.	40
CCDC168	643677	bcgsc.ca	37	13	103383417	103383417	+	Missense_Mutation	SNP	T	T	C	rs9554897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001146197	exon4	c.A19630G	p.K6544E	.	.	427	29	143	0	C|0.313;N|0.000	.
CCDC168	643677	bcgsc.ca	37	13	103388370	103388370	+	Missense_Mutation	SNP	C	C	T	rs9518825	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001146197	exon4	c.G14677A	p.G4893S	.	.	835	30	306	0	C|0.737;T|0.263	.
CCDC173	129881	bcgsc.ca	37	2	170502588	170502588	+	Silent	SNP	A	A	G	rs142156308		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001085447	exon9	c.T1422C	p.Y474Y	.	.	454	18	208	0	A|0.997;G|0.003	.
CCDC180	0	bcgsc.ca	37	9	100071728	100071728	+	Silent	SNP	G	G	A	rs77445142	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020893	exon3	c.G234A	p.R78R	.	.	73	10	37	0	G|0.775;A|0.225	.
CCDC180	0	bcgsc.ca	37	9	100074446	100074446	+	Silent	SNP	C	C	T	rs3747504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020893	exon4	c.C444T	p.I148I	.	.	69	4	63	0	C|0.766;T|0.234	.
CCDC180	0	bcgsc.ca	37	9	100124088	100124088	+	Silent	SNP	C	C	T	rs149606791	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020893	exon27	c.C3696T	p.D1232D	.	.	78	4	43	0	C|0.999;T|0.001	.
CCDC18	343099	bcgsc.ca	37	1	93698141	93698141	+	Silent	SNP	T	T	G	rs78187035	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC18	NM_206886	exon18	c.T2451G	p.L817L	.	.	362	16	220	0	T|0.993;G|0.007	138
CCDC18	343099	bcgsc.ca	37	1	93720153	93720153	+	Missense_Mutation	SNP	G	G	T	rs61729705	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC18	NM_206886	exon24	c.G3324T	p.R1108S	.	.	342	12	291	1	A|0.000;G|0.947;T|0.053	138
CCDC19	25790	bcgsc.ca	37	1	159856403	159856403	+	Missense_Mutation	SNP	T	T	C	rs35975416	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC19	NM_012337	exon6	c.A665G	p.D222G	.	.	694	32	225	0	T|0.986;C|0.014	91
CCDC27	148870	ucsc.edu;bcgsc.ca	37	1	3679886	3679886	+	Missense_Mutation	SNP	C	C	T	rs11806371	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC27	NM_152492	exon7	c.C1169T	p.P390L	.	.	78	7	35	0	C|0.920;T|0.080	91
CCDC30	728621	hgsc.bcm.edu;bcgsc.ca	37	1	43042767	43042767	+	Missense_Mutation	SNP	A	A	G	rs61729282	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC30	NM_001080850	exon7	c.A932G	p.Y311C	.	.	113	8	80	0	A|0.993;G|0.007	90
CCDC33	80125	bcgsc.ca	37	15	74625055	74625055	+	Missense_Mutation	SNP	G	G	C	rs61744270	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC33	NM_025055	exon16	c.G1807C	p.G603R	.	.	210	8	49	0	G|0.990;C|0.010	95
CCDC38	120935	bcgsc.ca	37	12	96288860	96288860	+	Missense_Mutation	SNP	T	T	C	rs10859974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC38	NM_182496	exon8	c.A679G	p.M227V	.	.	523	28	154	0	T|0.772;C|0.228	91
CCDC39	339829	bcgsc.ca	37	3	180366067	180366067	+	Silent	SNP	T	T	C	rs2338436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC39	NM_181426	exon10	c.A1248G	p.E416E	.	.	295	16	97	0	T|0.845;C|0.155	72
CCDC41	51134	bcgsc.ca	37	12	94769758	94769758	+	Silent	SNP	A	A	G	rs4761611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC41	NM_016122	exon8	c.T837C	p.R279R	.	.	207	16	80	0	A|0.153;G|0.847	90
CCDC47	57003	bcgsc.ca	37	17	61829312	61829312	+	Silent	SNP	C	C	T	rs34332702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC47	NM_020198	exon12	c.G1359A	p.Q453Q	.	.	320	24	93	0	C|0.970;T|0.030	90
CCDC50	152137	bcgsc.ca	37	3	191093080	191093080	+	Silent	SNP	A	A	G	rs2028573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC50	NM_178335	exon6	c.A678G	p.K226K	.	.	147	9	81	0	A|0.791;G|0.209	90
CCDC54	84692	bcgsc.ca	37	3	107096547	107096547	+	Missense_Mutation	SNP	G	G	A	rs709564	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC54	NM_032600	exon1	c.G113A	p.R38Q	.	.	227	10	97	0	G|0.632;A|0.368	90
CCDC60	160777	bcgsc.ca	37	12	119961587	119961587	+	Missense_Mutation	SNP	G	G	A	rs78218795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC60	NM_178499	exon11	c.G1193A	p.G398D	.	.	80	6	35	0	G|0.968;A|0.032	93
CCDC62	84660	bcgsc.ca	37	12	123285785	123285785	+	Silent	SNP	G	G	A	rs61735889	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC62	NM_201435	exon9	c.G1092A	p.Q364Q	.	.	278	12	99	0	G|0.986;A|0.014	157
CCDC68	80323	bcgsc.ca	37	18	52609945	52609945	+	Silent	SNP	C	C	T	rs61743412	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC68	NM_025214	exon3	c.G78A	p.T26T	.	.	454	19	173	0	C|0.936;T|0.064	91
CCDC69	26112	bcgsc.ca	37	5	150565008	150565008	+	Missense_Mutation	SNP	C	C	T	rs248427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC69	NM_015621	exon7	c.G590A	p.R197K	.	.	163	12	54	0	A|0.000;C|0.558;G|0.000;N|0.000;T|0.441	92
CCDC77	84318	hgsc.bcm.edu;bcgsc.ca	37	12	527792	527792	+	Silent	SNP	C	C	T	rs147266504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC77	NM_032358	exon5	c.C403T	p.L135L	.	.	170	14	61	0	C|0.999;T|0.001	91
CCDC79	283847	bcgsc.ca	37	16	66812797	66812797	+	Silent	SNP	C	C	T	rs363162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136505	exon10	c.G822A	p.T274T	.	.	103	7	53	0	C|0.441;T|0.559	.
CCDC81	60494	bcgsc.ca	37	11	86098680	86098680	+	Silent	SNP	T	T	C	rs292109	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC81	NM_021827	exon3	c.T264C	p.I88I	.	.	89	6	42	0	T|0.363;C|0.637	91
CCDC81	60494	bcgsc.ca	37	11	86106413	86106413	+	Missense_Mutation	SNP	A	A	C	rs73517949	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC81	NM_001156474	exon5	c.A593C	p.E198A	.	.	239	9	75	0	A|0.993;C|0.007	91
CCDC84	338657	bcgsc.ca	37	11	118886117	118886117	+	Silent	SNP	C	C	T	rs10111	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC84	NM_198489	exon10	c.C906T	p.R302R	.	.	145	12	68	1	C|0.763;T|0.237	91
CCDC88B	283234	bcgsc.ca	37	11	64109118	64109118	+	Missense_Mutation	SNP	T	T	G	rs647152	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC88B	NM_032251	exon7	c.T579G	p.D193E	.	.	136	16	37	1	T|0.649;G|0.351	94
CCDC88C	440193	bcgsc.ca	37	14	91792320	91792320	+	Silent	SNP	G	G	A	rs17127245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC88C	NM_001080414	exon11	c.C1131T	p.G377G	.	.	192	7	46	0	G|0.922;A|0.078	25
CCDC91	55297	bcgsc.ca	37	12	28603112	28603112	+	Missense_Mutation	SNP	A	A	G	rs1133028	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC91	NM_018318	exon8	c.A781G	p.M261V	.	.	189	7	70	0	A|0.875;G|0.125	90
CCDC94	55702	ucsc.edu	37	19	4251069	4251069	+	Silent	SNP	T	T	C	rs1045750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCDC94	NM_018074	exon3	c.T171C	p.N57N	.	.	77	8	54	1	T|0.563;C|0.437	90
CCHCR1	54535	bcgsc.ca	37	6	31118565	31118565	+	Silent	SNP	C	C	G	rs130078	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCHCR1	NM_001105564	exon6	c.G1038C	p.V346V	.	.	262	10	63	0	C|0.378;G|0.622	91
CCHCR1	54535	bcgsc.ca	37	6	31122315	31122315	+	Missense_Mutation	SNP	G	G	C	rs130066	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCHCR1	NM_001105564	exon4	c.C759G	p.S253R	.	.	199	11	72	0	G|0.540;C|0.460	91
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36170397	36170397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCIN	NM_005893	exon1	c.T898C	p.Y300H	.	.	60	18	20	0	.	92
CCL15	6359	bcgsc.ca	37	17	34325945	34325945	+	Missense_Mutation	SNP	T	T	G	rs34284235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCL15	NM_032965	exon2	c.A93C	p.L31F	.	.	305	11	139	0	T|0.997;G|0.003	91
CCL1	6346	bcgsc.ca	37	17	32688826	32688826	+	Missense_Mutation	SNP	T	T	C	rs138527286	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCL1	NM_002981	exon2	c.A166G	p.I56V	.	.	213	11	72	0	T|0.995;C|0.005	90
CCL16	6360	bcgsc.ca	37	17	34305224	34305224	+	Missense_Mutation	SNP	A	A	G	rs140793906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCL16	NM_004590	exon2	c.T152C	p.V51A	.	.	350	11	104	0	A|0.999;G|0.001	90
CCL23	6368	bcgsc.ca	37	17	34341379	34341379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCL23	NM_005064	exon2	c.T131C	p.L44P	.	.	216	10	98	0	.	90
CCNI	10983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77969711	77969711	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCNI	NM_006835	exon7	c.C795G	p.L265L	.	.	158	62	77	0	.	91
CCNT2	905	bcgsc.ca	37	2	135711516	135711516	+	Silent	SNP	C	C	T	rs3814355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCNT2	NM_058241	exon9	c.C1491T	p.D497D	.	.	300	18	144	0	C|0.347;T|0.653	417
CCNT2	905	bcgsc.ca	37	2	135711657	135711657	+	Silent	SNP	G	G	A	rs3814354	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCNT2	NM_058241	exon9	c.G1632A	p.K544K	.	.	155	10	70	1	G|0.375;A|0.625	417
CCNY	219771	bcgsc.ca	37	10	35772402	35772402	+	Silent	SNP	G	G	A	rs3802509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCNY	NM_145012	exon2	c.G225A	p.T75T	.	.	634	25	285	2	G|0.564;A|0.436	90
CCP110	9738	bcgsc.ca	37	16	19548116	19548116	+	Missense_Mutation	SNP	G	G	A	rs7190666	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCP110	NM_001199022	exon4	c.G1125A	p.M375I	.	.	386	16	153	0	G|0.843;A|0.157	90
CCR2	729230	bcgsc.ca	37	3	46399798	46399798	+	Silent	SNP	T	T	C	rs1799865	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCR2	NM_001123041	exon2	c.T780C	p.N260N	.	.	319	26	144	0	T|0.668;C|0.332	568
CCR4	1233	bcgsc.ca	37	3	32995928	32995928	+	Silent	SNP	C	C	T	rs2228428	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCR4	NM_005508	exon2	c.C1014T	p.Y338Y	.	.	264	8	78	1	C|0.799;T|0.201	658
CCRL2	9034	bcgsc.ca	37	3	46449864	46449864	+	Silent	SNP	G	G	T	rs6808835	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCRL2	NM_001130910	exon2	c.G330T	p.G110G	.	.	414	11	182	0	G|0.830;T|0.170	569
CCT6A	908	bcgsc.ca	37	7	56129511	56129511	+	Silent	SNP	A	A	G	rs4927	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCT6A	NM_001762	exon12	c.A1419G	p.S473S	.	.	585	13	230	1	A|0.904;G|0.096	91
CCT7	10574	bcgsc.ca	37	2	73477527	73477527	+	Silent	SNP	C	C	T	rs2231437	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCT7	NM_006429	exon10	c.C1164T	p.S388S	.	.	221	8	84	0	C|0.898;T|0.102	90
CCT8L2	150160	hgsc.bcm.edu	37	22	17072347	17072347	+	Nonsense_Mutation	SNP	C	C	T	rs139948519	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CCT8L2	NM_014406	exon1	c.G1094A	p.W365X	.	.	72	5	48	0	C|0.982;T|0.018	69
CD109	135228	broad.mit.edu	37	6	74407127	74407127	+	Silent	SNP	C	C	A	rs202157387	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD109	NM_133493	exon2	c.C79A	p.R27R	.	.	234	56	81	2	C|0.999;T|0.001	155
CD163L1	283316	bcgsc.ca	37	12	7527124	7527124	+	Missense_Mutation	SNP	A	A	G	rs35480970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD163L1	NM_174941	exon13	c.T3323C	p.M1108T	.	.	110	6	36	0	A|0.896;G|0.104	100
CD163L1	283316	ucsc.edu;bcgsc.ca	37	12	7528471	7528471	+	Silent	SNP	G	G	A	rs7306824	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD163L1	NM_174941	exon10	c.C2511T	p.N837N	.	.	93	11	48	0	G|0.601;A|0.399	100
CD180	4064	bcgsc.ca	37	5	66479189	66479189	+	Silent	SNP	G	G	A	rs3733910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD180	NM_005582	exon3	c.C1482T	p.T494T	.	.	134	9	60	0	G|0.912;A|0.088	91
CD1C	911	bcgsc.ca	37	1	158263066	158263066	+	Silent	SNP	C	C	A	rs36012320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD1C	NM_001765	exon5	c.C954A	p.V318V	.	.	1116	32	374	0	C|0.993;A|0.007	94
CD1E	913	bcgsc.ca	37	1	158324413	158324413	+	Missense_Mutation	SNP	A	A	G	rs2873587	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD1E	NM_001185107	exon2	c.A305G	p.H102R	.	.	174	6	55	0	A|0.982;G|0.018	93
CD200R1L	344807	bcgsc.ca;mdanderson.org	37	3	112546306	112546306	+	Missense_Mutation	SNP	C	C	A	rs4682119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD200R1L	NM_001008784	exon3	c.G338T	p.R113L	.	.	706	53	231	0	C|0.777;A|0.223	91
CD207	50489	bcgsc.ca	37	2	71058226	71058226	+	Silent	SNP	C	C	T	rs2080390	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD207	NM_015717	exon6	c.G942A	p.T314T	.	.	208	13	73	0	C|0.863;T|0.137	46
CD226	10666	bcgsc.ca	37	18	67531642	67531642	+	Missense_Mutation	SNP	T	T	C	rs763361	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD226	NM_006566	exon7	c.A919G	p.S307G	.	.	223	9	100	0	C|0.458;N|0.000	90
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	35829220	35829220	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD22	NM_001185100	exon6	c.G1135T	p.E379X	.	.	158	29	42	0	.	526
CD244	51744	bcgsc.ca	37	1	160811488	160811488	+	Missense_Mutation	SNP	T	T	C	rs34846692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD244	NM_016382	exon2	c.A265G	p.N89D	.	.	175	6	82	0	T|0.961;C|0.039	91
CD2	914	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117311147	117311147	+	Missense_Mutation	SNP	C	C	A	rs699738	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD2	NM_001767	exon5	c.C798A	p.H266Q	.	.	193	26	122	0	C|0.731;A|0.269	153
CD2AP	23607	hgsc.bcm.edu;bcgsc.ca	37	6	47522408	47522408	+	Silent	SNP	C	C	T	rs145518596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD2AP	NM_012120	exon5	c.C447T	p.T149T	.	.	395	18	138	0	C|0.997;T|0.003	92
CD300A	11314	bcgsc.ca	37	17	72469966	72469966	+	Missense_Mutation	SNP	G	G	A	rs78031008		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD300A	NM_007261	exon2	c.G332A	p.R111Q	.	.	266	23	91	0	.	92
CD300LD	100131439	bcgsc.ca	37	17	72584764	72584764	+	Missense_Mutation	SNP	C	C	T	rs783239	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD300LD	NM_001115152	exon2	c.G265A	p.V89M	.	.	302	26	125	0	C|0.680;T|0.320	22
CD300LG	146894	bcgsc.ca	37	17	41931375	41931375	+	Missense_Mutation	SNP	A	A	G	rs12453522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD300LG	NM_145273	exon4	c.A682G	p.T228A	.	.	103	8	35	0	A|0.735;G|0.265	90
CD40	958	bcgsc.ca	37	20	44751363	44751363	+	Missense_Mutation	SNP	C	C	T	rs11569321	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD40	NM_152854	exon4	c.C371T	p.S124L	.	.	210	10	51	0	C|0.952;T|0.048	659
CD40	958	bcgsc.ca	37	20	44756823	44756823	+	Missense_Mutation	SNP	C	C	T	rs7273698	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD40	NM_152854	exon6	c.C544T	p.R182W	.	.	386	19	117	0	C|0.952;T|0.048	659
CD4	920	bcgsc.ca	37	12	6924122	6924122	+	Missense_Mutation	SNP	A	A	G	rs28917504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD4	NM_000616	exon5	c.A571G	p.K191E	.	.	196	10	72	0	A|0.991;G|0.009	90
CD5	921	bcgsc.ca	37	11	60885667	60885667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD5	NM_014207	exon3	c.C115T	p.R39C	.	.	78	5	29	0	.	91
CD5	921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	60889246	60889246	+	Silent	SNP	C	C	T	rs34821010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD5	NM_014207	exon6	c.C969T	p.S323S	.	.	158	17	50	0	C|0.989;T|0.011	91
CD6	923	bcgsc.ca	37	11	60785352	60785352	+	Silent	SNP	A	A	G	rs1050922	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD6	NM_006725	exon11	c.A1704G	p.S568S	.	.	119	13	32	0	A|0.419;G|0.581	227
CD6	923	ucsc.edu;bcgsc.ca	37	11	60776103	60776103	+	Silent	SNP	T	T	C	rs61899223	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CD6	NM_006725	exon4	c.T567C	p.T189T	.	.	160	15	62	0	T|0.838;C|0.162	227
CDA	978	bcgsc.ca	37	1	20915701	20915701	+	Missense_Mutation	SNP	A	A	C	rs2072671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDA	NM_001785	exon1	c.A79C	p.K27Q	.	.	149	7	44	0	A|0.766;C|0.234	91
CDAN1	146059	bcgsc.ca	37	15	43017426	43017426	+	Silent	SNP	T	T	G	rs16957091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDAN1	NM_138477	exon27	c.A3474C	p.L1158L	.	.	234	12	46	0	T|0.565;G|0.435	92
CDC16	8881	bcgsc.ca	37	13	115002305	115002305	+	Silent	SNP	G	G	A	rs8002514	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDC16	NM_003903	exon3	c.G135A	p.Q45Q	.	.	213	12	61	0	G|0.678;A|0.322	226
CDC16	8881	bcgsc.ca	37	13	115004914	115004914	+	Silent	SNP	C	C	T	rs2296971	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDC16	NM_003903	exon5	c.C330T	p.D110D	.	.	78	6	41	0	C|0.562;T|0.438	226
CDC16	8881	bcgsc.ca	37	13	115030714	115030714	+	Silent	SNP	T	T	C	rs8809	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDC16	NM_003903	exon17	c.T1602C	p.I534I	.	.	265	14	108	1	T|0.659;C|0.341	226
CDC16	8881	ucsc.edu;bcgsc.ca	37	13	115004935	115004935	+	Silent	SNP	T	T	C	rs2296970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDC16	NM_003903	exon5	c.T351C	p.P117P	.	.	66	6	42	0	T|0.563;C|0.437	226
CDC27	996	bcgsc.ca	37	17	45198343	45198343	+	Silent	SNP	C	C	T	rs731790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDC27	NM_001114091	exon19	c.G2451A	p.A817A	.	.	109	5	69	0	C|0.925;T|0.075	291
CDC42BPG	55561	bcgsc.ca	37	11	64591972	64591972	+	Silent	SNP	T	T	C	rs10792447	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDC42BPG	NM_017525	exon37	c.A4629G	p.L1543L	.	.	222	10	66	0	T|0.473;C|0.527	528
CDCA2	157313	bcgsc.ca	37	8	25317987	25317987	+	Missense_Mutation	SNP	C	C	T	rs115875864	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDCA2	NM_152562	exon3	c.C149T	p.T50I	.	.	107	5	83	0	C|0.982;T|0.018	90
CDCA2	157313	bcgsc.ca	37	8	25323689	25323689	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDCA2	NM_152562	exon5	c.388-2A>G	.	.	.	123	5	85	0	.	90
CDCP1	64866	hgsc.bcm.edu;bcgsc.ca	37	3	45153778	45153778	+	Missense_Mutation	SNP	G	G	A	rs144845427		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDCP1	NM_178181	exon3	c.C452T	p.P151L	.	.	153	10	62	0	G|1.000;A|0.000	117
CDH12	1010	bcgsc.ca	37	5	22078584	22078584	+	Missense_Mutation	SNP	C	C	T	rs4371716	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDH12	NM_004061	exon5	c.G202A	p.V68M	.	.	318	23	130	2	C|0.643;T|0.357	92
CDH13	1012	ucsc.edu;bcgsc.ca	37	16	83816871	83816871	+	Missense_Mutation	SNP	T	T	G	rs34106627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDH13	NM_001220488	exon14	c.T2069G	p.L690R	.	.	60	7	38	0	T|0.995;G|0.005	67
CDH20	28316	bcgsc.ca	37	18	59166523	59166523	+	Silent	SNP	C	C	T	rs116696883	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDH20	NM_031891	exon2	c.C351T	p.H117H	.	.	144	5	45	0	C|0.992;T|0.008	155
CDH2	1000	bcgsc.ca	37	18	25562929	25562929	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDH2	NM_001792	exon14	c.A2328G	p.E776E	.	.	150	6	55	0	.	525
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66430086	66430086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDH5	NM_001795	exon8	c.A1342G	p.K448E	.	.	92	32	41	0	.	525
CDHR1	92211	bcgsc.ca	37	10	85972043	85972043	+	Silent	SNP	A	A	G	rs10749482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDHR1	NM_001171971	exon15	c.A1662G	p.E554E	.	.	154	5	42	1	A|0.585;G|0.415	91
CDHR2	54825	bcgsc.ca	37	5	176017455	176017455	+	Missense_Mutation	SNP	C	C	T	rs2291442	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDHR2	NM_017675	exon27	c.C3383T	p.T1128M	.	.	164	13	60	0	C|0.719;T|0.281	70
CDHR3	222256	bcgsc.ca	37	7	105621512	105621512	+	Silent	SNP	G	G	T	rs193795	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDHR3	NM_152750	exon3	c.G348T	p.L116L	.	.	137	6	80	1	G|0.578;T|0.422	23
CDHR3	222256	bcgsc.ca	37	7	105653450	105653450	+	Silent	SNP	G	G	A	rs79686695	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDHR3	NM_152750	exon9	c.G1197A	p.Q399Q	.	.	148	13	66	1	G|0.988;A|0.012	23
CDHR4	389118	bcgsc.ca	37	3	49836707	49836707	+	Silent	SNP	G	G	A	rs7629936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001007540	exon2	c.C213T	p.A71A	.	.	349	10	96	1	G|0.775;A|0.225	.
CDHR4	389118	hgsc.bcm.edu;bcgsc.ca	37	3	49830624	49830624	+	Missense_Mutation	SNP	G	G	T	rs143779889	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001007540	exon13	c.C1744A	p.R582S	.	.	117	9	37	0	G|0.999;T|0.001	.
CDHR5	53841	bcgsc.ca	37	11	618860	618860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDHR5	NM_021924	exon13	c.A1699G	p.S567G	.	.	394	45	117	5	.	90
CDHR5	53841	ucsc.edu	37	11	618740	618740	+	Missense_Mutation	SNP	C	C	G	rs142627719	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDHR5	NM_021924	exon13	c.G1819C	p.A607P	.	.	495	98	168	2	C|0.981;G|0.019	90
CDK11A	728642	bcgsc.ca	37	1	1635565	1635565	+	Silent	SNP	C	C	T	rs11488591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDK11A	NM_024011	exon16	c.G1707A	p.A569A	.	.	150	15	93	0	C|0.822;T|0.178	14
CDK11A	728642	bcgsc.ca	37	1	1638925	1638925	+	Missense_Mutation	SNP	C	C	T	rs200982240	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDK11A	NM_024011	exon11	c.G1168A	p.D390N	.	.	182	13	94	0	C|0.960;T|0.040	14
CDK11B	984	bcgsc.ca	37	1	1575784	1575784	+	Missense_Mutation	SNP	C	C	T	rs6658335		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDK11B	NM_033486	exon11	c.G1099A	p.G367R	.	.	328	19	94	0	.	358
CDK17	5128	hgsc.bcm.edu;bcgsc.ca	37	12	96679853	96679853	+	Silent	SNP	A	A	G	rs146214342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDK17	NM_001170464	exon13	c.T1290C	p.Y430Y	.	.	409	22	162	0	A|0.996;G|0.004	550
CDK5RAP3	80279	hgsc.bcm.edu;bcgsc.ca	37	17	46053278	46053278	+	Missense_Mutation	SNP	C	C	T	rs199625816		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDK5RAP3	NM_176096	exon8	c.C697T	p.R233W	.	.	92	7	32	0	.	226
CDK8	1024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26970474	26970474	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDK8	NM_001260	exon8	c.A843G	p.K281K	.	.	384	76	190	1	.	1023
CDKAL1	54901	bcgsc.ca	37	6	20649552	20649552	+	Silent	SNP	C	C	T	rs9465854	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDKAL1	NM_017774	exon5	c.C315T	p.L105L	.	.	118	13	49	0	C|0.923;T|0.077	92
CDKL4	344387	bcgsc.ca	37	2	39406392	39406392	+	Missense_Mutation	SNP	G	G	T	rs34819676	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDKL4	NM_001009565	exon8	c.C863A	p.S288Y	.	.	512	19	232	1	G|0.988;T|0.012	334
CDKL4	344387	bcgsc.ca	37	2	39431687	39431687	+	Silent	SNP	G	G	A	rs11892364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDKL4	NM_001009565	exon4	c.C435T	p.F145F	.	.	226	7	130	0	G|0.981;A|0.019	334
CDKN2A	1029	broad.mit.edu	37	9	21971209	21971209	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CDKN2A,NS,carcinoma,0	CDKN2A	NM_001195132	exon3	c.151-2A>T	.	.	.	3	2	14	0	.	23992
CDON	50937	bcgsc.ca	37	11	125853986	125853986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDON	NM_016952	exon16	c.A2776G	p.K926E	.	.	67	4	40	0	.	158
CDON	50937	bcgsc.ca	37	11	125871735	125871735	+	Silent	SNP	C	C	T	rs516664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDON	NM_016952	exon11	c.G2037A	p.A679A	.	.	304	18	163	0	C|0.667;T|0.333	158
CDON	50937	bcgsc.ca	37	11	125889526	125889526	+	Missense_Mutation	SNP	C	C	T	rs3740909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDON	NM_016952	exon4	c.G484A	p.E162K	.	.	138	7	63	0	C|0.896;N|0.000	158
CDON	50937	bcgsc.ca	37	11	125891269	125891269	+	Missense_Mutation	SNP	C	C	T	rs3740912	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDON	NM_016952	exon3	c.G223A	p.V75I	.	.	192	15	79	1	C|0.401;T|0.599	158
CDON	50937	bcgsc.ca	37	11	125891295	125891295	+	Missense_Mutation	SNP	T	T	C	rs7122277	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDON	NM_016952	exon3	c.A197G	p.K66R	.	.	215	11	77	0	T|0.971;C|0.029	158
CDRT1	374286	bcgsc.ca	37	17	15496727	15496727	+	Missense_Mutation	SNP	T	T	G	rs79385100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDRT1	NM_006382	exon11	c.A1930C	p.N644H	.	.	379	14	131	1	T|0.825;G|0.175	68
CDRT1	374286	bcgsc.ca	37	17	15496730	15496730	+	Missense_Mutation	SNP	A	A	G	rs8078150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDRT1	NM_006382	exon11	c.T1927C	p.F643L	.	.	357	15	131	0	A|0.688;G|0.312	68
CDRT4	284040	bcgsc.ca	37	17	15341183	15341183	+	Missense_Mutation	SNP	A	A	C	rs2954759	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDRT4	NM_001204477	exon4	c.T366G	p.H122Q	.	.	322	23	115	0	A|0.767;C|0.233	90
CDS2	8760	bcgsc.ca	37	20	5166418	5166418	+	Silent	SNP	G	G	A	rs3818196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDS2	NM_003818	exon9	c.G774A	p.K258K	.	.	506	20	133	0	G|0.966;A|0.034	226
CDYL2	124359	bcgsc.ca	37	16	80666991	80666991	+	Silent	SNP	A	A	G	rs74028355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDYL2	NM_152342	exon3	c.T759C	p.V253V	.	.	167	13	71	0	A|0.937;G|0.063	90
CDYL2	124359	bcgsc.ca	37	16	80667093	80667093	+	Silent	SNP	T	T	C	rs73592252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CDYL2	NM_152342	exon3	c.A657G	p.P219P	.	.	179	12	75	0	T|0.937;C|0.063	90
CEACAM1	634	bcgsc.ca	37	19	43031248	43031248	+	Missense_Mutation	SNP	T	T	G	rs8111468	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM1	NM_001184816	exon2	c.A369C	p.Q123H	.	.	588	23	216	1	T|0.880;G|0.120	515
CEACAM1	634	bcgsc.ca	37	19	43031369	43031369	+	Missense_Mutation	SNP	G	G	A	rs8110904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM1	NM_001184816	exon2	c.C248T	p.A83V	.	.	804	37	282	1	G|0.900;A|0.100	515
CEACAM1	634	bcgsc.ca	37	19	43031514	43031514	+	Missense_Mutation	SNP	G	G	T	rs8111171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM1	NM_001184816	exon2	c.C103A	p.Q35K	.	.	285	14	124	0	G|0.888;T|0.112	515
CEACAM16	388551	bcgsc.ca	37	19	45211201	45211201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM16	NM_001039213	exon6	c.A1009G	p.T337A	.	.	112	6	50	0	.	23
CEACAM20	125931	bcgsc.ca	37	19	45015106	45015106	+	Silent	SNP	G	G	A	rs116775350	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM20	NM_001102597	exon12	c.C1719T	p.N573N	.	.	154	7	42	0	G|0.993;A|0.007	67
CEACAM20	125931	bcgsc.ca	37	19	45029208	45029208	+	Missense_Mutation	SNP	G	G	A	rs10408247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM20	NM_001102600	exon2	c.C122T	p.A41V	.	.	237	15	71	1	G|0.725;A|0.275	67
CEACAM6	4680	bcgsc.ca	37	19	42260697	42260697	+	Missense_Mutation	SNP	G	G	A	rs61736638	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM6	NM_002483	exon2	c.G254A	p.G85E	.	.	703	23	289	0	G|0.974;A|0.026	91
CEACAM7	1087	bcgsc.ca	37	19	42187716	42187716	+	Missense_Mutation	SNP	A	A	G	rs16975478	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM7	NM_006890	exon3	c.T706C	p.Y236H	.	.	183	12	59	0	A|0.956;G|0.044	92
CEACAM7	1087	hgsc.bcm.edu;bcgsc.ca	37	19	42181429	42181429	+	Missense_Mutation	SNP	C	C	T	rs35494482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEACAM7	NM_006890	exon4	c.G709A	p.E237K	.	.	174	9	51	0	C|0.984;T|0.016	92
CEBPE	1053	hgsc.bcm.edu	37	14	23586714	23586714	+	Silent	SNP	G	G	A	rs143753215	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEBPE	NM_001805	exon2	c.C828T	p.G276G	.	.	96	6	26	0	G|1.000;A|0.000	92
CEBPZ	10153	bcgsc.ca	37	2	37438993	37438993	+	Silent	SNP	G	G	A	rs1137437	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEBPZ	NM_005760	exon12	c.C2793T	p.S931S	.	.	208	19	93	0	G|0.634;A|0.366	91
CECR1	51816	bcgsc.ca	37	22	17690430	17690430	+	Silent	SNP	C	C	G	rs7289141	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CECR1	NM_017424	exon1	c.G138C	p.L46L	.	.	188	9	70	0	C|0.869;G|0.131	91
CELA3A	10136	bcgsc.ca	37	1	22333954	22333954	+	Silent	SNP	C	C	T	rs74062237	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELA3A	NM_005747	exon6	c.C588T	p.S196S	.	.	106	11	42	0	C|0.950;T|0.050	45
CELSR1	9620	bcgsc.ca	37	22	46762988	46762988	+	Missense_Mutation	SNP	C	C	T	rs75983687	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CELSR1,NS,NS,0	CELSR1	NM_014246	exon29	c.G8107A	p.V2703M	.	.	87	5	42	0	C|0.966;T|0.034	525
CELSR1	9620	bcgsc.ca	37	22	46773004	46773004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELSR1	NM_014246	exon24	c.T7538C	p.L2513P	.	.	75	5	28	0	.	525
CELSR1	9620	bcgsc.ca	37	22	46785370	46785370	+	Silent	SNP	C	C	A	rs34751339	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELSR1	NM_014246	exon18	c.G6372T	p.T2124T	.	.	183	8	35	0	C|0.975;A|0.025	525
CELSR1	9620	bcgsc.ca	37	22	46785376	46785376	+	Silent	SNP	A	A	G	rs115467657	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELSR1	NM_014246	exon18	c.T6366C	p.N2122N	.	.	177	8	35	0	A|0.975;G|0.025	525
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46932145	46932145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELSR1	NM_014246	exon1	c.A923G	p.D308G	.	.	71	21	26	0	.	525
CELSR1	9620	ucsc.edu;bcgsc.ca	37	22	46860063	46860063	+	Missense_Mutation	SNP	C	C	T	rs6008842	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELSR1	NM_014246	exon2	c.G3724A	p.V1242I	.	.	104	10	45	0	C|0.950;T|0.050	525
CELSR1	9620	ucsc.edu;bcgsc.ca	37	22	46860088	46860088	+	Silent	SNP	G	G	C	rs3747251	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CELSR1	NM_014246	exon2	c.C3699G	p.A1233A	.	.	103	14	40	0	G|0.840;C|0.160	525
CENPBD1	92806	bcgsc.ca	37	16	90037871	90037871	+	Missense_Mutation	SNP	A	A	G	rs188939547	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_145039	exon1	c.T460C	p.F154L	.	.	416	13	113	0	A|0.999;G|0.001	.
CENPF	1063	bcgsc.ca	37	1	214813782	214813782	+	Missense_Mutation	SNP	A	A	G	rs3795524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.A2101G	p.M701V	.	.	214	9	106	0	A|0.914;G|0.086	567
CENPF	1063	bcgsc.ca	37	1	214813941	214813941	+	Missense_Mutation	SNP	C	C	G	rs3795523	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.C2260G	p.Q754E	.	.	154	6	66	0	C|0.885;G|0.115	567
CENPF	1063	bcgsc.ca	37	1	214814125	214814125	+	Missense_Mutation	SNP	G	G	A	rs3795522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.G2444A	p.R815H	.	.	185	6	79	0	G|0.917;A|0.083	567
CENPF	1063	bcgsc.ca	37	1	214814582	214814582	+	Silent	SNP	G	G	A	rs3795520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.G2901A	p.R967R	.	.	148	7	101	0	G|0.914;A|0.086	567
CENPF	1063	bcgsc.ca	37	1	214814733	214814733	+	Missense_Mutation	SNP	T	T	G	rs3795519	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.T3052G	p.Y1018D	.	.	264	7	160	0	T|0.915;G|0.085	567
CENPF	1063	bcgsc.ca	37	1	214814778	214814778	+	Missense_Mutation	SNP	G	G	A	rs3795518	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.G3097A	p.G1033R	.	.	270	10	179	0	G|0.882;A|0.118	567
CENPF	1063	bcgsc.ca	37	1	214814995	214814995	+	Missense_Mutation	SNP	C	C	T	rs12067133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon12	c.C3314T	p.T1105I	.	.	377	10	164	1	C|0.915;T|0.085	567
CENPF	1063	bcgsc.ca	37	1	214818215	214818215	+	Missense_Mutation	SNP	G	G	A	rs3748692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.G5302A	p.D1768N	.	.	189	8	126	1	G|0.924;A|0.076	567
CENPF	1063	bcgsc.ca	37	1	214818223	214818223	+	Missense_Mutation	SNP	T	T	A	rs3748693	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.T5310A	p.H1770Q	.	.	190	8	130	1	T|0.799;A|0.201	567
CENPF	1063	bcgsc.ca	37	1	214818846	214818846	+	Missense_Mutation	SNP	A	A	G	rs3790646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.A5933G	p.D1978G	.	.	205	8	81	0	A|0.920;G|0.080	567
CENPF	1063	bcgsc.ca	37	1	214818945	214818945	+	Missense_Mutation	SNP	A	A	C	rs3790647	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.A6032C	p.E2011A	.	.	177	12	77	0	A|0.916;C|0.084;T|0.000	567
CENPF	1063	bcgsc.ca	37	1	214819044	214819044	+	Missense_Mutation	SNP	C	C	T	rs7533166	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.C6131T	p.S2044L	.	.	153	8	92	0	C|0.958;T|0.042	567
CENPF	1063	bcgsc.ca	37	1	214819328	214819328	+	Missense_Mutation	SNP	G	G	A	rs3748695	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.G6415A	p.A2139T	.	.	146	5	120	0	G|0.914;A|0.086	567
CENPF	1063	bcgsc.ca	37	1	214819587	214819587	+	Missense_Mutation	SNP	A	A	G	rs12058704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.A6674G	p.Q2225R	.	.	222	14	129	0	A|0.915;G|0.085	567
CENPF	1063	bcgsc.ca	37	1	214819980	214819980	+	Missense_Mutation	SNP	C	C	T	rs3748696	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.C7067T	p.A2356V	.	.	233	7	184	0	C|0.919;G|0.000;T|0.081	567
CENPF	1063	bcgsc.ca	37	1	214820494	214820494	+	Silent	SNP	G	G	A	rs3790648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.G7581A	p.L2527L	.	.	218	6	111	0	G|0.909;A|0.091	567
CENPF	1063	hgsc.bcm.edu;bcgsc.ca	37	1	214818053	214818053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPF	NM_016343	exon13	c.G5140A	p.A1714T	.	.	198	9	105	0	.	567
CENPJ	55835	bcgsc.ca	37	13	25480616	25480616	+	Silent	SNP	T	T	A	rs17081368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPJ	NM_018451	exon7	c.A1560T	p.T520T	.	.	217	10	122	0	T|0.950;A|0.050	92
CENPL	91687	bcgsc.ca	37	1	173772506	173772506	+	Silent	SNP	T	T	G	rs16846420	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPL	NM_001127181	exon6	c.A696C	p.A232A	.	.	330	22	127	0	T|0.876;G|0.124	90
CENPT	80152	bcgsc.ca	37	16	67865499	67865499	+	Silent	SNP	A	A	G	rs8056617	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CENPT	NM_025082	exon9	c.T540C	p.A180A	.	.	115	5	38	0	A|0.997;G|0.003	90
CEP112	201134	bcgsc.ca	37	17	63898353	63898353	+	Missense_Mutation	SNP	T	T	C	rs74004953	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP112	NM_001199165	exon20	c.A2080G	p.I694V	.	.	402	17	125	0	T|0.982;C|0.018	90
CEP120	153241	bcgsc.ca	37	5	122725768	122725768	+	Missense_Mutation	SNP	G	G	A	rs61747983	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP120	NM_153223	exon9	c.C1105T	p.P369S	.	.	447	20	236	0	G|0.987;A|0.013	91
CEP120	153241	bcgsc.ca	37	5	122748182	122748182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP120	NM_153223	exon5	c.A374G	p.E125G	.	.	263	10	91	0	.	91
CEP192	55125	bcgsc.ca	37	18	13056333	13056333	+	Silent	SNP	C	C	T	rs2282541	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP192	NM_032142	exon19	c.C3744T	p.H1248H	.	.	128	6	42	0	C|0.713;T|0.287	27
CEP250	11190	bcgsc.ca	37	20	34092555	34092555	+	Missense_Mutation	SNP	A	A	G	rs61729985	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP250	NM_007186	exon30	c.A6358G	p.N2120D	.	.	90	8	38	0	A|0.995;G|0.005	27
CEP290	80184	bcgsc.ca	37	12	88500552	88500552	+	Missense_Mutation	SNP	A	A	C	rs7970228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP290	NM_025114	exon25	c.T2717G	p.L906W	.	.	357	11	179	0	A|0.945;C|0.055	96
CEP55	55165	ucsc.edu;bcgsc.ca	37	10	95259979	95259979	+	Missense_Mutation	SNP	C	C	G	rs3740370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP55	NM_001127182	exon2	c.C171G	p.H57Q	.	.	81	9	60	0	C|0.630;G|0.370	90
CEP57	9702	bcgsc.ca	37	11	95564259	95564259	+	Missense_Mutation	SNP	A	A	G	rs644799	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP57	NM_014679	exon11	c.A1342G	p.R448G	.	.	212	14	176	0	T|0.163;G|0.216;C|0.065;N|0.000;A|0.555	91
CEP57L1	285753	bcgsc.ca	37	6	109471373	109471373	+	Silent	SNP	G	G	A	rs144264237	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP57L1	NM_001271853	exon4	c.G393A	p.K131K	.	.	284	9	137	0	G|0.997;A|0.003	91
CEP57L1	285753	bcgsc.ca	37	6	109480562	109480562	+	Missense_Mutation	SNP	T	T	C	rs61743581	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP57L1	NM_001271853	exon9	c.T913C	p.W305R	.	.	405	14	167	0	T|0.887;C|0.113	91
CEP68	23177	bcgsc.ca	37	2	65298657	65298657	+	Missense_Mutation	SNP	A	A	G	rs13389745	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP68	NM_015147	exon3	c.A427G	p.I143V	.	.	200	9	65	0	A|0.929;G|0.071	91
CEP68	23177	ucsc.edu;bcgsc.ca	37	2	65299766	65299766	+	Silent	SNP	T	T	C	rs55952639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP68	NM_015147	exon3	c.T1536C	p.D512D	.	.	88	12	46	0	T|0.848;C|0.152	91
CEP76	79959	bcgsc.ca	37	18	12698983	12698983	+	Missense_Mutation	SNP	C	C	T	rs79615555	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP76	NM_024899	exon4	c.G515A	p.S172N	.	.	297	11	154	0	C|0.990;T|0.010	90
CEP78	84131	bcgsc.ca	37	9	80879149	80879149	+	Silent	SNP	C	C	T	rs1057650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CEP78	NM_001098802	exon13	c.C1545T	p.I515I	.	.	306	25	121	0	C|0.921;T|0.079	69
CEP85L	387119	bcgsc.ca	37	6	118791804	118791804	+	Missense_Mutation	SNP	T	T	C	rs7743702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001178035	exon12	c.A1927G	p.M643V	.	.	372	21	107	1	T|0.975;C|0.025	.
CEP85L	387119	bcgsc.ca	37	6	118803091	118803091	+	Missense_Mutation	SNP	C	C	G	rs9489410	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001178035	exon9	c.G1605C	p.Q535H	.	.	332	13	129	0	C|0.982;G|0.018	.
CEP89	84902	bcgsc.ca	37	19	33450806	33450806	+	Missense_Mutation	SNP	C	C	T	rs73926195	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CEP89,NS,carcinoma,0	CEP89	NM_032816	exon3	c.G305A	p.R102Q	.	.	162	11	34	0	C|0.943;T|0.057	94
CER1	9350	bcgsc.ca	37	9	14722477	14722477	+	Missense_Mutation	SNP	G	G	C	rs3747532	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CER1	NM_005454	exon1	c.C194G	p.A65G	.	.	229	8	77	0	G|0.572;C|0.428	226
CERCAM	51148	bcgsc.ca	37	9	131196463	131196463	+	Missense_Mutation	SNP	G	G	A	rs114084202	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CERCAM	NM_016174	exon10	c.G1286A	p.R429Q	.	.	142	8	67	0	G|0.988;A|0.012	69
CERCAM	51148	bcgsc.ca	37	9	131196704	131196704	+	Silent	SNP	G	G	A	rs7259	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CERCAM	NM_016174	exon11	c.G1347A	p.K449K	.	.	110	9	43	0	G|0.673;A|0.327	69
CERS4	79603	ucsc.edu	37	19	8319455	8319455	+	Silent	SNP	C	C	T	rs11881630	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024552	exon4	c.C246T	p.A82A	.	.	76	7	17	0	C|0.913;T|0.087	.
CES1P2	0	bcgsc.ca	37	16	55783511	55783511	+	RNA	SNP	G	G	A	rs73547960	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	348	29	148	0	G|0.826;A|0.174	.
CES5A	221223	bcgsc.ca	37	16	55880423	55880423	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CES5A	NM_001190158	exon14	c.T1755C	p.P585P	.	.	198	6	100	0	.	94
CETP	1071	bcgsc.ca	37	16	57016092	57016092	+	Missense_Mutation	SNP	G	G	A	rs5882	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CETP	NM_000078	exon14	c.G1264A	p.V422I	.	.	97	5	33	0	G|0.425;A|0.575	91
CFH	3075	bcgsc.ca	37	1	196706677	196706677	+	Missense_Mutation	SNP	G	G	T	rs515299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CFH	NM_000186	exon17	c.G2669T	p.S890I	.	.	171	6	74	0	G|0.927;T|0.073	566
CFH	3075	bcgsc.ca	37	1	196711067	196711067	+	Missense_Mutation	SNP	G	G	T	rs534399	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CFH	NM_000186	exon19	c.G3019T	p.V1007L	.	.	344	9	154	0	G|0.903;T|0.097	566
CFH	3075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196642196	196642200	+	Frame_Shift_Del	DEL	CTATA	CTATA	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CTATA	CTATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CFH	NM_001014975	exon2	c.147_151del	p.49_51del	.	.	247	0	112	0	.	566
CFP	5199	ucsc.edu;bcgsc.ca	37	X	47483800	47483800	+	Silent	SNP	G	G	A	rs1048118	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CFP	NM_001145252	exon9	c.C1284T	p.N428N	.	.	86	14	27	0	0|0.004;T|0.047	193
CFTR	1080	bcgsc.ca	37	7	117254756	117254756	+	Missense_Mutation	SNP	G	G	A	rs143120209		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CFTR	NM_000492	exon21	c.G3457A	p.V1153M	.	.	108	8	49	0	G|1.000;A|0.000	518
CHD1	1105	bcgsc.ca	37	5	98199204	98199204	+	Silent	SNP	C	C	T	rs161941	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHD1	NM_001270	exon31	c.G4335A	p.E1445E	.	.	342	16	132	0	C|0.658;T|0.342	274
CHD2	1106	ucsc.edu;bcgsc.ca	37	15	93536197	93536197	+	Silent	SNP	C	C	T	rs2272457	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHD2	NM_001271	exon28	c.C3564T	p.Y1188Y	.	.	77	10	37	0	C|0.770;T|0.230	229
CHD3	1107	bcgsc.ca	37	17	7792326	7792326	+	Missense_Mutation	SNP	C	C	T	rs931543	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHD3	NM_001005273	exon1	c.C8T	p.A3V	.	.	158	7	61	0	C|0.915;T|0.085	228
CHD8	57680	bcgsc.ca	37	14	21883961	21883961	+	Missense_Mutation	SNP	T	T	C	rs200056646		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHD8	NM_001170629	exon5	c.A1822G	p.I608V	.	.	650	23	174	0	T|0.999;C|0.001	277
CHD9	80205	bcgsc.ca	37	16	53283966	53283966	+	Silent	SNP	G	G	A	rs8052283	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHD9	NM_025134	exon17	c.G3849A	p.Q1283Q	.	.	178	8	77	0	G|0.692;A|0.308	272
CHL1	10752	bcgsc.ca	37	3	361508	361508	+	Missense_Mutation	SNP	C	C	T	rs2272522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHL1	NM_001253388	exon1	c.C49T	p.L17F	.	.	52	5	30	0	C|0.678;T|0.322	583
CHML	1122	bcgsc.ca	37	1	241797819	241797819	+	Missense_Mutation	SNP	C	C	T	rs80336474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHML	NM_001821	exon1	c.G1250A	p.R417Q	.	.	116	5	57	0	C|0.992;T|0.008	96
CHMP1A	5119	hgsc.bcm.edu	37	16	89712997	89712997	+	Nonsense_Mutation	SNP	G	G	A	rs61730918	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001083314	exon5	c.C487T	p.R163X	.	.	140	8	55	0	G|0.996;A|0.004	.
CHMP2B	25978	hgsc.bcm.edu;bcgsc.ca	37	3	87302890	87302890	+	Missense_Mutation	SNP	G	G	A	rs78268395	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHMP2B	NM_014043	exon6	c.G560A	p.S187N	.	.	172	11	63	0	G|0.993;A|0.007	229
CHMP7	91782	hgsc.bcm.edu;bcgsc.ca	37	8	23115893	23115893	+	Silent	SNP	C	C	T	rs115402987	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHMP7	NM_152272	exon7	c.C891T	p.A297A	.	.	81	6	39	0	C|0.990;T|0.010	90
CHN2	1124	bcgsc.ca	37	7	29552213	29552213	+	Silent	SNP	T	T	C	rs3750099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHN2	NM_004067	exon13	c.T1269C	p.N423N	.	.	178	11	74	0	T|0.815;C|0.185	229
CHPT1	56994	bcgsc.ca	37	12	102117589	102117589	+	Silent	SNP	C	C	T	rs11082	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHPT1	NM_020244	exon7	c.C1029T	p.N343N	.	.	156	8	68	0	C|0.344;T|0.656	90
CHRD	8646	bcgsc.ca	37	3	184099342	184099342	+	Silent	SNP	G	G	C	rs3749228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHRD	NM_003741	exon4	c.G441C	p.P147P	.	.	42	8	34	0	G|0.299;C|0.701	93
CHRD	8646	bcgsc.ca	37	3	184103839	184103839	+	Silent	SNP	G	G	A	rs34052076	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHRD	NM_003741	exon15	c.G1824A	p.Q608Q	.	.	223	7	90	0	G|0.989;A|0.011	93
CHRD	8646	bcgsc.ca	37	3	184106493	184106493	+	Silent	SNP	T	T	G	rs2293606	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHRD	NM_003741	exon21	c.T2673G	p.P891P	.	.	251	12	42	0	T|0.904;G|0.096	93
CHRNA2	1135	bcgsc.ca	37	8	27324822	27324822	+	Missense_Mutation	SNP	T	T	C	rs891398	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHRNA2	NM_000742	exon5	c.A373G	p.T125A	.	.	149	11	58	0	T|0.402;C|0.598	91
CHRNA2	1135	bcgsc.ca	37	8	27328511	27328511	+	Missense_Mutation	SNP	G	G	A	rs2472553	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHRNA2	NM_000742	exon2	c.C65T	p.T22I	.	.	93	7	37	0	G|0.819;A|0.181	91
CHRNA9	55584	bcgsc.ca	37	4	40337908	40337908	+	Silent	SNP	T	T	C	rs10022491	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHRNA9	NM_017581	exon2	c.T129C	p.S43S	.	.	242	7	116	0	T|0.360;C|0.640	96
CHSY1	22856	bcgsc.ca	37	15	101717680	101717680	+	Silent	SNP	G	G	T	rs8024370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CHSY1	NM_014918	exon3	c.C2322A	p.T774T	.	.	278	22	116	0	G|0.317;T|0.683	90
CIC	23152	bcgsc.ca	37	19	42793545	42793545	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CIC	NM_015125	exon8	c.T1347C	p.D449D	.	.	195	7	52	0	.	591
CIR1	9541	bcgsc.ca	37	2	175213645	175213645	+	Missense_Mutation	SNP	G	G	C	rs73975114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CIR1	NM_004882	exon10	c.C933G	p.D311E	.	.	372	23	183	0	G|0.949;C|0.051	153
CIT	11113	bcgsc.ca	37	12	120148363	120148363	+	Silent	SNP	C	C	T	rs35490437	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CIT	NM_001206999	exon38	c.G4917A	p.T1639T	.	.	145	7	57	0	C|0.969;T|0.031	399
CITED1	4435	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71521867	71521867	+	Missense_Mutation	SNP	G	G	C	rs3012627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CITED1	NM_001144885	exon4	c.C366G	p.H122Q	.	.	161	25	39	0	G|0.313;C|0.687	130
CIZ1	25792	bcgsc.ca	37	9	130941349	130941349	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CIZ1	NM_001257975	exon8	c.A1227G	p.V409V	.	.	290	22	108	0	.	92
CKAP2L	150468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113509890	113509890	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CKAP2L	NM_152515	exon5	c.1556delG	p.S519fs	.	.	1100	356	381	0	.	90
CKAP5	9793	bcgsc.ca	37	11	46784697	46784697	+	Silent	SNP	A	A	C	rs7928445	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CKAP5	NM_001008938	exon30	c.T3720G	p.G1240G	.	.	174	10	87	0	A|0.851;C|0.149	92
CLASP1	23332	bcgsc.ca	37	2	122216419	122216419	+	Silent	SNP	A	A	G	rs2304560	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLASP1	NM_001207051	exon13	c.T1311C	p.I437I	.	.	129	8	62	0	A|0.779;G|0.221	91
CLCA3P	9629	ucsc.edu;bcgsc.ca	37	1	87101375	87101375	+	RNA	SNP	C	C	G	rs2292830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCA3P	.	.	.	.	.	.	343	35	205	0	C|0.486;G|0.514	90
CLCA3P	9629	ucsc.edu;bcgsc.ca	37	1	87101649	87101649	+	RNA	SNP	T	T	C	rs2292829	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCA3P	.	.	.	.	.	.	119	13	80	0	T|0.869;C|0.131	90
CLCA4	22802	bcgsc.ca	37	1	87031656	87031656	+	Missense_Mutation	SNP	A	A	C	rs2231592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCA4	NM_012128	exon6	c.A907C	p.S303R	.	.	223	11	98	0	A|0.947;C|0.053	92
CLCA4	22802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87043670	87043670	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCA4	NM_012128	exon12	c.G2037T	p.R679R	.	.	172	31	116	0	.	92
CLCC1	23155	bcgsc.ca	37	1	109479978	109479978	+	Missense_Mutation	SNP	G	G	T	rs168107	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCC1	NM_001048210	exon10	c.C1104A	p.S368R	.	.	102	6	56	0	A|0.000;C|0.006	91
CLCN1	1180	bcgsc.ca	37	7	143016928	143016928	+	Silent	SNP	C	C	T	rs6962852	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN1	NM_000083	exon2	c.C261T	p.T87T	.	.	119	6	53	0	C|0.646;T|0.354	156
CLCN1	1180	bcgsc.ca	37	7	143018474	143018474	+	Silent	SNP	C	C	T	rs56307536	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN1	NM_000083	exon4	c.C450T	p.Y150Y	.	.	169	6	61	0	C|0.988;T|0.012	156
CLCN3	1182	bcgsc.ca	37	4	170634408	170634408	+	Silent	SNP	A	A	G	rs1010713	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN3	NM_001829	exon12	c.A2328G	p.R776R	.	.	276	17	89	0	A|0.844;G|0.156	136
CLCN4	1183	bcgsc.ca	37	X	10180554	10180554	+	Silent	SNP	G	G	A	rs34148950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN4	NM_001830	exon10	c.G1437A	p.A479A	.	.	148	10	51	0	G|0.869;A|0.131	134
CLCN5	1184	bcgsc.ca	37	X	49846390	49846390	+	Silent	SNP	G	G	A	rs34464675	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN5	NM_001127898	exon9	c.G819A	p.S273S	.	.	162	11	51	0	G|0.984;A|0.016	132
CLCN7	1186	bcgsc.ca	37	16	1504437	1504437	+	Silent	SNP	C	C	T	rs12935737	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN7	NM_001287	exon13	c.G1128A	p.P376P	.	.	128	9	52	0	C|0.926;T|0.074	92
CLCN7	1186	bcgsc.ca	37	16	1509123	1509123	+	Silent	SNP	G	G	A	rs12923538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLCN7	NM_001287	exon7	c.C660T	p.H220H	.	.	197	8	41	0	G|0.855;A|0.145	92
CLDN24	100132463	bcgsc.ca	37	4	184243189	184243189	+	Missense_Mutation	SNP	T	T	C	rs148134118	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001185149	exon1	c.A391G	p.I131V	.	.	267	11	91	0	T|0.956;C|0.044	.
CLDN6	9074	bcgsc.ca	37	16	3065596	3065596	+	Missense_Mutation	SNP	T	T	C	rs2257295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLDN6	NM_021195	exon2	c.A427G	p.I143V	.	.	120	6	38	0	T|0.645;C|0.355	90
CLDN7	1366	ucsc.edu	37	17	7163739	7163739	+	Missense_Mutation	SNP	A	A	G	rs4562	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLDN7	NM_001307	exon4	c.T590C	p.V197A	.	.	57	5	24	0	A|0.309;G|0.691	91
CLDND2	125875	bcgsc.ca	37	19	51870771	51870771	+	Missense_Mutation	SNP	C	C	A	rs61737052	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLDND2	NM_152353	exon3	c.G370T	p.V124F	.	.	259	8	90	0	C|0.949;A|0.051	90
CLEC10A	10462	bcgsc.ca	37	17	6980273	6980273	+	Missense_Mutation	SNP	C	C	T	rs16956478	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC10A	NM_182906	exon4	c.G218A	p.R73K	.	.	176	9	55	0	C|0.948;T|0.052	91
CLEC10A	10462	bcgsc.ca	37	17	6981353	6981353	+	Silent	SNP	G	G	C	rs732828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC10A	NM_182906	exon3	c.C147G	p.L49L	.	.	140	6	56	0	G|0.584;C|0.415	91
CLEC10A	10462	ucsc.edu;bcgsc.ca	37	17	6981397	6981397	+	Missense_Mutation	SNP	A	A	G	rs90951	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC10A	NM_182906	exon3	c.T103C	p.C35R	.	.	129	15	64	0	A|0.468;G|0.531	91
CLEC11A	6320	bcgsc.ca	37	19	51228634	51228634	+	Silent	SNP	G	G	A	rs11084024	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC11A	NM_002975	exon4	c.G882A	p.E294E	.	.	189	13	62	0	G|0.808;A|0.192	91
CLEC16A	23274	bcgsc.ca	37	16	11056378	11056378	+	Silent	SNP	C	C	T	rs16957839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC16A	NM_015226	exon3	c.C276T	p.Y92Y	.	.	289	8	111	0	C|0.873;T|0.127	92
CLEC16A	23274	bcgsc.ca	37	16	11154770	11154770	+	Silent	SNP	G	G	A	rs2286973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC16A	NM_015226	exon18	c.G2007A	p.V669V	.	.	237	9	52	0	G|0.516;A|0.484	92
CLEC17A	388512	ucsc.edu;bcgsc.ca	37	19	14705574	14705574	+	Missense_Mutation	SNP	T	T	C	rs78269670	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC17A	NM_207390	exon7	c.T365C	p.L122P	.	.	57	6	28	0	T|0.943;C|0.057	22
CLEC1A	51267	bcgsc.ca	37	12	10234008	10234008	+	Silent	SNP	A	A	G	rs35543384	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC1A	NM_016511	exon3	c.T219C	p.F73F	.	.	225	10	64	1	A|0.994;G|0.006	91
CLEC2A	387836	bcgsc.ca	37	12	10069385	10069385	+	Silent	SNP	G	G	A	rs113041524	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001130711	exon4	c.C324T	p.Y108Y	.	.	248	7	107	0	G|0.998;A|0.002	.
CLEC2L	154790	bcgsc.ca	37	7	139221051	139221051	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080511	exon2	c.C222T	p.I74I	.	.	300	9	50	0	.	.
CLEC4D	338339	bcgsc.ca	37	12	8667897	8667897	+	Missense_Mutation	SNP	A	A	G	rs4304840	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC4D	NM_080387	exon2	c.A94G	p.S32G	.	.	779	36	257	2	A|0.678;G|0.322	90
CLEC6A	93978	bcgsc.ca	37	12	8610545	8610545	+	Missense_Mutation	SNP	T	T	A	rs75947861	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLEC6A	NM_001007033	exon2	c.T83A	p.I28N	.	.	291	13	123	0	T|0.983;A|0.017	135
CLGN	1047	bcgsc.ca	37	4	141320021	141320021	+	Missense_Mutation	SNP	C	C	T	rs2175563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLGN	NM_001130675	exon9	c.G868A	p.V290I	.	.	529	24	175	0	C|0.930;A|0.000	93
CLGN	1047	bcgsc.ca	37	4	141323162	141323162	+	Missense_Mutation	SNP	C	C	A	rs2567241	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLGN	NM_001130675	exon7	c.G478T	p.A160S	.	.	223	10	96	0	C|0.939;A|0.061	93
CLHC1	130162	bcgsc.ca	37	2	55408776	55408776	+	Missense_Mutation	SNP	G	G	T	rs74621782	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152385	exon10	c.C1111A	p.L371M	.	.	252	7	160	0	G|0.979;T|0.021	.
CLHC1	130162	bcgsc.ca	37	2	55408785	55408785	+	Missense_Mutation	SNP	C	C	T	rs75073607	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152385	exon10	c.G1102A	p.A368T	.	.	249	7	154	0	C|0.982;G|0.001;T|0.017	.
CLIP1	6249	hgsc.bcm.edu;bcgsc.ca	37	12	122825734	122825734	+	Missense_Mutation	SNP	C	C	T	rs201352592		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLIP1	NM_001247997	exon11	c.G2017A	p.E673K	.	.	549	25	278	0	C|0.999;T|0.000	155
CLIP2	7461	bcgsc.ca	37	7	73811479	73811479	+	Silent	SNP	T	T	C	rs76865959	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLIP2	NM_003388	exon14	c.T2796C	p.R932R	.	.	83	6	62	0	T|0.982;C|0.018	93
CLIP2	7461	bcgsc.ca	37	7	73811558	73811558	+	Missense_Mutation	SNP	G	G	A	rs150942066	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLIP2	NM_003388	exon14	c.G2875A	p.G959R	.	.	67	4	38	0	G|0.998;A|0.002	93
CLIP4	79745	bcgsc.ca	37	2	29356669	29356669	+	Silent	SNP	A	A	G	rs3100232	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLIP4	NM_024692	exon5	c.A516G	p.T172T	.	.	161	9	59	0	A|0.551;G|0.449	91
CLMN	79789	bcgsc.ca	37	14	95670132	95670132	+	Silent	SNP	G	G	A	rs10131338	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLMN	NM_024734	exon9	c.C1554T	p.H518H	.	.	249	10	128	0	G|0.986;A|0.014	90
CLN5	1203	bcgsc.ca	37	13	77574983	77574983	+	Missense_Mutation	SNP	A	A	G	rs1800209	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLN5	NM_006493	exon4	c.A1103G	p.K368R	.	.	441	13	145	0	A|0.774;G|0.226	91
CLSTN1	22883	bcgsc.ca	37	1	9811541	9811541	+	Silent	SNP	A	A	G	rs11674	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLSTN1	NM_001009566	exon5	c.T639C	p.V213V	.	.	125	11	50	0	A|0.749;G|0.251	523
CLSTN2	64084	bcgsc.ca	37	3	140122610	140122610	+	Silent	SNP	C	C	A	rs74507604	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLSTN2	NM_022131	exon3	c.C372A	p.I124I	.	.	164	6	72	0	C|0.983;A|0.017	157
CLTC	1213	bcgsc.ca	37	17	57758791	57758791	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CLTC	NM_004859	exon20	c.A3201G	p.E1067E	.	.	134	6	56	0	.	835
CLUH	23277	bcgsc.ca	37	17	2595964	2595964	+	Silent	SNP	G	G	A	rs2302199	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015229	exon21	c.C3222T	p.A1074A	.	.	115	8	45	0	G|0.545;A|0.455	.
CMAHP	8418	broad.mit.edu	37	6	25113854	25113854	+	RNA	SNP	T	T	C	rs1046141	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	96	9	46	0	T|0.953;C|0.047	.
CMAHP	8418	bcgsc.ca	37	6	25097298	25097298	+	RNA	SNP	C	C	G	rs1128827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	389	33	184	1	C|0.308;G|0.692	.
CMAHP	8418	bcgsc.ca	37	6	25106663	25106663	+	RNA	SNP	G	G	A	rs7774557	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	251	16	93	0	G|0.925;A|0.075	.
CMAHP	8418	bcgsc.ca	37	6	25109774	25109774	+	RNA	SNP	G	G	A	rs1046142	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	168	14	90	0	G|0.924;A|0.076	.
CMAHP	8418	ucsc.edu;bcgsc.ca	37	6	25108923	25108923	+	RNA	SNP	A	A	G	rs1128826	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	92	11	31	0	A|0.928;G|0.072	.
CMPK1	51727	bcgsc.ca	37	1	47840592	47840592	+	Silent	SNP	A	A	G	rs6656779	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMPK1	NM_016308	exon4	c.A483G	p.E161E	.	.	120	8	47	0	A|0.931;G|0.069	116
CMTM2	146225	bcgsc.ca	37	16	66614008	66614008	+	Missense_Mutation	SNP	T	T	C	rs2290182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMTM2	NM_144673	exon2	c.T365C	p.I122T	.	.	449	27	144	0	T|0.810;C|0.190	91
CMYA5	202333	bcgsc.ca	37	5	79024779	79024779	+	Missense_Mutation	SNP	A	A	G	rs16877109	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A191G	p.Y64C	.	.	185	16	83	0	A|0.702;G|0.298	77
CMYA5	202333	bcgsc.ca	37	5	79025317	79025317	+	Silent	SNP	A	A	G	rs1366270	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A729G	p.Q243Q	.	.	142	12	73	0	A|0.700;G|0.300	77
CMYA5	202333	bcgsc.ca	37	5	79025800	79025800	+	Silent	SNP	A	A	G	rs114379779		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A1212G	p.G404G	.	.	117	6	61	0	A|0.995;G|0.005	77
CMYA5	202333	bcgsc.ca	37	5	79026539	79026539	+	Missense_Mutation	SNP	A	A	C	rs57544556	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A1951C	p.S651R	.	.	174	16	79	0	A|0.757;C|0.243	77
CMYA5	202333	bcgsc.ca	37	5	79027605	79027605	+	Missense_Mutation	SNP	T	T	C	rs6893869	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.T3017C	p.V1006A	.	.	119	11	65	0	T|0.703;C|0.297	77
CMYA5	202333	bcgsc.ca	37	5	79027700	79027700	+	Missense_Mutation	SNP	T	T	C	rs62621915	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.T3112C	p.F1038L	.	.	228	13	64	0	T|0.864;C|0.136	77
CMYA5	202333	bcgsc.ca	37	5	79028472	79028472	+	Missense_Mutation	SNP	C	C	T	rs4704585	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.C3884T	p.A1295V	.	.	173	10	97	0	C|0.428;T|0.572	77
CMYA5	202333	bcgsc.ca	37	5	79028513	79028513	+	Missense_Mutation	SNP	A	A	G	rs16877133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A3925G	p.I1309V	.	.	180	15	100	0	A|0.791;G|0.209	77
CMYA5	202333	bcgsc.ca	37	5	79029383	79029383	+	Missense_Mutation	SNP	T	T	G	rs1428224	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.T4795G	p.S1599A	.	.	81	5	51	0	T|0.702;G|0.298	77
CMYA5	202333	bcgsc.ca	37	5	79029749	79029749	+	Missense_Mutation	SNP	A	A	G	rs1428225	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A5161G	p.I1721V	.	.	107	11	52	0	A|0.752;G|0.248	77
CMYA5	202333	bcgsc.ca	37	5	79030212	79030212	+	Missense_Mutation	SNP	C	C	T	rs16877147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.C5624T	p.A1875V	.	.	158	13	104	0	C|0.851;T|0.149	77
CMYA5	202333	bcgsc.ca	37	5	79030338	79030338	+	Missense_Mutation	SNP	A	A	G	rs16877150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A5750G	p.D1917G	.	.	185	17	116	0	A|0.852;G|0.148	77
CMYA5	202333	bcgsc.ca	37	5	79030346	79030346	+	Missense_Mutation	SNP	A	A	G	rs16877151	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A5758G	p.S1920G	.	.	195	12	112	0	A|0.703;G|0.297	77
CMYA5	202333	bcgsc.ca	37	5	79032666	79032666	+	Missense_Mutation	SNP	C	C	T	rs28362541	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.C8078T	p.T2693I	.	.	175	11	117	0	C|0.824;T|0.176	77
CMYA5	202333	bcgsc.ca	37	5	79032711	79032711	+	Missense_Mutation	SNP	G	G	A	rs28362542	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.G8123A	p.R2708H	.	.	159	13	121	0	G|0.824;A|0.176	77
CMYA5	202333	bcgsc.ca	37	5	79041057	79041057	+	Missense_Mutation	SNP	A	A	G	rs12514461	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon4	c.A10747G	p.K3583E	.	.	257	8	149	1	A|0.904;G|0.096	77
CMYA5	202333	bcgsc.ca	37	5	79048562	79048562	+	Silent	SNP	C	C	T	rs1366272	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon6	c.C11055T	p.F3685F	.	.	152	6	49	0	C|0.753;T|0.247	77
CMYA5	202333	ucsc.edu	37	5	79028586	79028586	+	Missense_Mutation	SNP	C	C	T	rs16877135	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.C3998T	p.A1333V	.	.	99	10	79	1	C|0.791;T|0.209	77
CMYA5	202333	ucsc.edu;bcgsc.ca	37	5	79025634	79025634	+	Missense_Mutation	SNP	G	G	A	rs1366271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.G1046A	p.G349D	.	.	195	20	129	0	G|0.742;A|0.258	77
CMYA5	202333	ucsc.edu;bcgsc.ca	37	5	79029726	79029726	+	Missense_Mutation	SNP	T	T	A	rs16877141	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.T5138A	p.I1713N	.	.	101	14	54	0	T|0.807;A|0.193	77
CMYA5	202333	ucsc.edu;bcgsc.ca	37	5	79030045	79030045	+	Silent	SNP	A	A	G	rs4639193	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A5457G	p.V1819V	.	.	168	18	91	0	A|0.396;G|0.604	77
CMYA5	202333	ucsc.edu;bcgsc.ca	37	5	79033306	79033306	+	Missense_Mutation	SNP	A	A	C	rs2278239	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.A8718C	p.K2906N	.	.	134	14	72	0	A|0.698;C|0.302	77
CMYA5	202333	ucsc.edu;bcgsc.ca	37	5	79034662	79034662	+	Missense_Mutation	SNP	C	C	G	rs3828611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.C10074G	p.H3358Q	.	.	96	11	50	0	C|0.783;G|0.217	77
CMYA5	202333	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79026360	79026360	+	Missense_Mutation	SNP	G	G	A	rs16877124	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.G1772A	p.G591D	.	.	292	31	180	0	G|0.705;A|0.295	77
CMYA5	202333	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79031372	79031372	+	Missense_Mutation	SNP	G	G	C	rs6859595	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CMYA5	NM_153610	exon2	c.G6784C	p.V2262L	.	.	158	24	79	0	G|0.738;C|0.262	77
CNBD2	140894	ucsc.edu	37	20	34618622	34618622	+	Splice_Site	SNP	G	G	C	rs2794385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	62	10	31	1	G|0.945;C|0.055	.
CNDP1	84735	bcgsc.ca	37	18	72238472	72238472	+	Missense_Mutation	SNP	C	C	A	rs73973908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNDP1	NM_032649	exon7	c.C808A	p.H270N	.	.	559	32	140	0	C|0.848;A|0.152	90
CNGA1	1259	bcgsc.ca	37	4	47945295	47945295	+	Missense_Mutation	SNP	C	C	T	rs28642966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNGA1	NM_001142564	exon7	c.G559A	p.D187N	.	.	314	9	182	0	C|0.787;T|0.213	92
CNGA2	1260	bcgsc.ca	37	X	150909307	150909307	+	Missense_Mutation	SNP	G	G	T	rs35350051	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNGA2	NM_005140	exon5	c.G416T	p.W139L	.	.	150	10	38	0	G|0.898;T|0.102	193
CNGB1	1258	bcgsc.ca	37	16	57949224	57949224	+	Missense_Mutation	SNP	G	G	T	rs10459809	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNGB1	NM_001297	exon23	c.C2233A	p.L745I	.	.	124	9	46	0	G|0.899;T|0.101	137
CNGB1	1258	bcgsc.ca	37	16	57953010	57953010	+	Silent	SNP	C	C	G	rs35424571	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNGB1	NM_001297	exon20	c.G1950C	p.P650P	.	.	187	10	49	0	C|0.933;G|0.067	137
CNGB1	1258	ucsc.edu	37	16	57937856	57937856	+	Silent	SNP	C	C	T	rs413562	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNGB1	NM_001297	exon27	c.C2664A	p.A888A	.	.	70	8	35	0	T|0.033;G|0.619;C|0.348	137
CNKSR2	22866	hgsc.bcm.edu;bcgsc.ca	37	X	21488889	21488889	+	Silent	SNP	T	T	C	rs34161348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNKSR2	NM_001168647	exon5	c.T525C	p.C175C	.	.	482	29	135	0	T|0.988;C|0.012	625
CNNM3	26505	ucsc.edu;bcgsc.ca	37	2	97493877	97493877	+	Silent	SNP	T	T	C	rs1320149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNNM3	NM_017623	exon5	c.T1731C	p.F577F	.	.	181	18	100	0	T|0.548;G|0.066	91
CNPPD1	27013	bcgsc.ca	37	2	220040330	220040330	+	Silent	SNP	A	A	G	rs1127101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNPPD1	NM_015680	exon3	c.T243C	p.Y81Y	.	.	344	31	99	0	A|0.547;G|0.453	90
CNR1	1268	bcgsc.ca	37	6	88854985	88854985	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNR1	NM_001160258	exon4	c.G9A	p.S3S	.	.	227	7	68	0	.	92
CNRIP1	25927	bcgsc.ca	37	2	68511584	68511584	+	Silent	SNP	A	A	G	rs735815	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNRIP1	NM_001111101	exon3	c.T363C	p.S121S	.	.	131	8	49	0	A|0.599;G|0.401	69
CNTD1	124817	bcgsc.ca	37	17	40957849	40957849	+	Missense_Mutation	SNP	G	G	A	rs61995868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTD1	NM_173478	exon4	c.G527A	p.R176Q	.	.	279	20	74	0	G|0.891;A|0.109	90
CNTLN	54875	bcgsc.ca	37	9	17226216	17226216	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTLN	NM_017738	exon3	c.T465C	p.S155S	.	.	193	6	92	0	.	91
CNTLN	54875	bcgsc.ca	37	9	17273731	17273731	+	Missense_Mutation	SNP	A	A	G	rs3808795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTLN	NM_017738	exon6	c.A850G	p.T284A	.	.	333	14	174	1	A|0.706;G|0.294	91
CNTN3	5067	bcgsc.ca	37	3	74419065	74419065	+	Missense_Mutation	SNP	T	T	C	rs62620465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CNTN3,NS,carcinoma,0	CNTN3	NM_020872	exon6	c.A736G	p.K246E	.	.	456	13	234	1	T|0.939;C|0.061	137
CNTN6	27255	bcgsc.ca	37	3	1262474	1262474	+	Silent	SNP	T	T	C	rs2013828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTN6	NM_014461	exon3	c.T159C	p.N53N	.	.	480	16	183	0	T|0.584;C|0.416	345
CNTN6	27255	bcgsc.ca	37	3	1394054	1394054	+	Silent	SNP	A	A	C	rs73094903	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTN6	NM_014461	exon12	c.A1411C	p.R471R	.	.	703	20	282	0	A|0.994;C|0.006	345
CNTN6	27255	bcgsc.ca	37	3	1424718	1424718	+	Silent	SNP	G	G	A	rs2291101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTN6	NM_014461	exon18	c.G2259A	p.V753V	.	.	194	9	71	0	G|0.557;A|0.443	345
CNTN6	27255	bcgsc.ca	37	3	1424745	1424745	+	Silent	SNP	C	C	T	rs4684146	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTN6	NM_014461	exon18	c.C2286T	p.V762V	.	.	224	11	70	0	C|0.816;T|0.184	345
CNTNAP1	8506	ucsc.edu;bcgsc.ca	37	17	40849573	40849573	+	Silent	SNP	G	G	A	rs77725092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTNAP1	NM_003632	exon22	c.G3570A	p.E1190E	.	.	93	8	32	0	G|0.990;A|0.010	525
CNTNAP3B	728577	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	43818062	43818062	+	Missense_Mutation	SNP	T	T	A	rs78142446	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001201380	exon7	c.T949A	p.S317T	.	.	336	38	191	2	T|0.172;A|0.828	.
CNTRL	11064	bcgsc.ca	37	9	123912542	123912542	+	Silent	SNP	T	T	G	rs7857010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CNTRL	NM_007018	exon23	c.T3744G	p.T1248T	.	.	148	6	48	0	T|0.949;G|0.051	661
COA4	51287	hgsc.bcm.edu;bcgsc.ca	37	11	73584353	73584353	+	Missense_Mutation	SNP	G	G	A	rs35017327	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016565	exon2	c.C71T	p.P24L	.	.	126	7	52	0	G|0.997;A|0.003	.
COBL	23242	bcgsc.ca	37	7	51095750	51095750	+	Missense_Mutation	SNP	C	C	G	rs17134127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COBL	NM_015198	exon10	c.G3043C	p.A1015P	.	.	130	6	43	0	C|0.949;G|0.051	95
COBL	23242	bcgsc.ca	37	7	51096014	51096014	+	Missense_Mutation	SNP	C	C	T	rs17134128	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COBL	NM_015198	exon10	c.G2779A	p.D927N	.	.	359	11	88	0	C|0.951;T|0.049	95
COBL	23242	bcgsc.ca	37	7	51096830	51096830	+	Missense_Mutation	SNP	C	C	G	rs112568753	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COBL	NM_015198	exon10	c.G1963C	p.A655P	.	.	197	11	112	1	C|0.988;G|0.012	95
COBL	23242	bcgsc.ca	37	7	51096992	51096992	+	Missense_Mutation	SNP	G	G	A	rs61737866	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COBL	NM_015198	exon10	c.C1801T	p.H601Y	.	.	259	9	113	0	G|0.974;A|0.026	95
COBL	23242	bcgsc.ca	37	7	51287614	51287614	+	Silent	SNP	T	T	G	rs145775268	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COBL	NM_015198	exon2	c.A69C	p.P23P	.	.	105	53	47	4	T|0.663;G|0.338	95
COG2	22796	bcgsc.ca	37	1	230796533	230796533	+	Silent	SNP	T	T	G	rs16852160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COG2	NM_007357	exon3	c.T264G	p.L88L	.	.	337	15	107	0	T|0.962;G|0.038	90
COG5	10466	bcgsc.ca	37	7	107002806	107002806	+	Missense_Mutation	SNP	A	A	G	rs2269970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COG5	NM_006348	exon9	c.T988C	p.F330L	.	.	333	27	117	1	A|0.339;G|0.661	93
COL11A2	1302	bcgsc.ca	37	6	33139328	33139328	+	Silent	SNP	C	C	T	rs1799910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL11A2	NM_080680	exon43	c.G3174A	p.P1058P	.	.	135	13	42	0	C|0.500;T|0.499	95
COL11A2	1302	bcgsc.ca	37	6	33153528	33153528	+	Missense_Mutation	SNP	C	C	T	rs9277934	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL11A2	NM_080680	exon6	c.G826A	p.E276K	.	.	115	7	31	0	C|0.684;N|0.000	95
COL12A1	1303	bcgsc.ca	37	6	75848181	75848181	+	Missense_Mutation	SNP	A	A	G	rs240736	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL12A1	NM_004370	exon29	c.T5213C	p.I1738T	.	.	191	7	74	0	A|0.734;G|0.266	142
COL15A1	1306	bcgsc.ca	37	9	101822220	101822220	+	Silent	SNP	C	C	T	rs4480177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL15A1	NM_001855	exon36	c.C3387T	p.P1129P	.	.	515	31	232	0	C|0.706;T|0.294	96
COL15A1	1306	hgsc.bcm.edu;bcgsc.ca	37	9	101816873	101816873	+	Missense_Mutation	SNP	A	A	G	rs35642150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL15A1	NM_001855	exon32	c.A2966G	p.K989R	.	.	184	12	96	0	A|0.988;G|0.012	96
COL15A1	1306	ucsc.edu	37	9	101748356	101748356	+	Missense_Mutation	SNP	A	A	G	rs2075663	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL15A1	NM_001855	exon3	c.A610G	p.M204V	.	.	62	6	21	0	A|0.472;C|0.000;G|0.528	96
COL16A1	1307	bcgsc.ca	37	1	32155367	32155367	+	Missense_Mutation	SNP	T	T	C	rs35791190		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL16A1	NM_001856	exon23	c.A1595G	p.E532G	.	.	109	8	29	0	T|0.993;C|0.007	98
COL17A1	1308	bcgsc.ca	37	10	105824333	105824333	+	Missense_Mutation	SNP	G	G	A	rs805708	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL17A1	NM_000494	exon10	c.C629T	p.T210M	.	.	164	9	71	0	G|0.416;A|0.584	95
COL17A1	1308	bcgsc.ca	37	10	105830185	105830185	+	Silent	SNP	C	C	G	rs17116450	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL17A1	NM_000494	exon9	c.G606C	p.S202S	.	.	186	12	52	0	C|0.982;G|0.018	95
COL18A1	80781	bcgsc.ca	37	21	46927489	46927489	+	Silent	SNP	A	A	G	rs12483761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL18A1	NM_030582	exon38	c.A3762G	p.T1254T	.	.	308	20	73	1	A|0.882;G|0.118	90
COL18A1	80781	bcgsc.ca	37	21	46930147	46930147	+	Missense_Mutation	SNP	G	G	A	rs201006742		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL18A1	NM_030582	exon40	c.G4196A	p.R1399H	.	.	200	9	159	1	.	90
COL1A2	1278	bcgsc.ca	37	7	94030899	94030899	+	Silent	SNP	T	T	C	rs1800222	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL1A2	NM_000089	exon6	c.T246C	p.D82D	.	.	323	10	122	0	T|0.716;C|0.284	521
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139772511	139772511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL22A1	NM_152888	exon18	c.G1877T	p.G626V	.	.	162	111	31	0	.	103
COL24A1	255631	bcgsc.ca	37	1	86591001	86591001	+	Missense_Mutation	SNP	C	C	T	rs74097690	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL24A1	NM_152890	exon3	c.G1018A	p.E340K	.	.	353	15	150	0	C|0.972;T|0.028	94
COL24A1	255631	bcgsc.ca	37	1	86591567	86591567	+	Missense_Mutation	SNP	G	G	A	rs1027819	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL24A1	NM_152890	exon3	c.C452T	p.P151L	.	.	121	5	59	0	G|0.956;A|0.044	94
COL26A1	136227	bcgsc.ca	37	7	101194424	101194424	+	Silent	SNP	C	C	T	rs17135626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	193	21	61	0	C|0.700;T|0.300	.
COL27A1	85301	hgsc.bcm.edu;bcgsc.ca	37	9	117044586	117044586	+	Silent	SNP	C	C	T	rs200162485		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL27A1	NM_032888	exon38	c.C3747T	p.G1249G	.	.	191	13	50	0	C|0.999;T|0.001	94
COL28A1	340267	bcgsc.ca	37	7	7571420	7571420	+	Silent	SNP	T	T	C	rs17168526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL28A1	NM_001037763	exon3	c.A240G	p.Q80Q	.	.	425	27	195	1	T|0.969;C|0.031	93
COL4A6	1288	bcgsc.ca	37	X	107413851	107413851	+	Missense_Mutation	SNP	T	T	C	rs34466065	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL4A6	NM_001847	exon35	c.A3484G	p.I1162V	.	.	71	5	31	0	T|0.708;0|0.016	199
COL4A6	1288	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107433688	107433688	+	Missense_Mutation	SNP	A	A	G	rs1042065	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL4A6	NM_001847	exon20	c.T1363C	p.S455P	.	.	82	15	26	0	0|0.014;A|0.336;G|0.650;N|0.000	199
COL5A1	1289	hgsc.bcm.edu;bcgsc.ca	37	9	137630361	137630361	+	Silent	SNP	G	G	A	rs61729545	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL5A1	NM_000093	exon10	c.G1431A	p.A477A	.	.	169	9	64	0	G|0.937;A|0.063	524
COL6A2	1292	bcgsc.ca	37	21	47532440	47532440	+	Silent	SNP	C	C	T	rs59531343	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	COL6A2,brain,glioma,+1	COL6A2	NM_058175	exon3	c.C663T	p.P221P	.	.	124	7	47	0	C|0.896;G|0.000;T|0.104	515
COL6A2	1292	hgsc.bcm.edu;bcgsc.ca	37	21	47538551	47538551	+	Silent	SNP	C	C	T	rs144482400	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL6A2	NM_058175	exon13	c.C1140T	p.R380R	.	.	135	13	48	0	C|0.997;T|0.003	515
COL6A3	1293	bcgsc.ca	37	2	238253149	238253149	+	Silent	SNP	G	G	A	rs2646258	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL6A3	NM_004369	exon36	c.C7512T	p.N2504N	.	.	469	25	120	1	G|0.896;A|0.104	526
COL6A3	1293	bcgsc.ca	37	2	238257013	238257013	+	Silent	SNP	G	G	A	rs2646265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL6A3	NM_004369	exon30	c.C6945T	p.F2315F	.	.	114	7	43	0	G|0.901;A|0.099	526
COL6A3	1293	bcgsc.ca	37	2	238267717	238267717	+	Silent	SNP	C	C	T	rs2646254	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL6A3	NM_004369	exon20	c.G6369A	p.L2123L	.	.	251	20	95	0	C|0.720;T|0.280	526
COL6A5	256076	bcgsc.ca	37	3	130098349	130098349	+	Silent	SNP	G	G	A	rs16845861	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153264	exon4	c.G756A	p.R252R	.	.	229	9	62	1	G|0.633;A|0.367	.
COL6A5	256076	bcgsc.ca	37	3	130103709	130103709	+	Missense_Mutation	SNP	G	G	A	rs1453241	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153264	exon5	c.G1363A	p.E455K	.	.	130	5	53	0	G|0.620;A|0.380	.
COL6A5	256076	bcgsc.ca	37	3	130104062	130104062	+	Silent	SNP	T	T	C	rs10212241	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153264	exon5	c.T1716C	p.T572T	.	.	101	8	63	0	T|0.605;C|0.395	.
COL6A5	256076	bcgsc.ca	37	3	130129322	130129322	+	Missense_Mutation	SNP	G	G	C	rs35886424	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153264	exon20	c.G4616C	p.S1539T	.	.	284	17	90	0	G|0.889;C|0.111	.
COL6A6	131873	bcgsc.ca	37	3	130285645	130285645	+	Missense_Mutation	SNP	A	A	C	rs11921769	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL6A6	NM_001102608	exon4	c.A1382C	p.E461A	.	.	182	8	71	0	A|0.944;C|0.056	76
COL6A6	131873	bcgsc.ca	37	3	130368069	130368069	+	Missense_Mutation	SNP	A	A	G	rs7614116	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL6A6	NM_001102608	exon32	c.A5396G	p.H1799R	.	.	144	11	66	0	A|0.472;G|0.528	76
COL9A1	1297	bcgsc.ca	37	6	70963124	70963124	+	Silent	SNP	A	A	C	rs9346373	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL9A1	NM_001851	exon26	c.T1728G	p.P576P	.	.	280	12	187	0	A|0.831;C|0.169	94
COL9A1	1297	ucsc.edu;bcgsc.ca	37	6	70984436	70984436	+	Missense_Mutation	SNP	A	A	G	rs592121	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL9A1	NM_001851	exon11	c.T1015C	p.S339P	.	.	93	14	34	0	A|0.531;G|0.469	94
COL9A3	1299	bcgsc.ca	37	20	61472073	61472073	+	Silent	SNP	C	C	A	rs1048100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COL9A3	NM_001853	exon32	c.C2044A	p.R682R	.	.	139	8	46	0	C|0.833;A|0.167	514
COMMD2	51122	bcgsc.ca;mdanderson.org	37	3	149459413	149459413	+	Silent	SNP	C	C	T	rs11549572	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COMMD2	NM_016094	exon5	c.G495A	p.L165L	.	.	452	40	158	1	C|0.754;T|0.246	90
COMP	1311	bcgsc.ca	37	19	18895107	18895107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COMP	NM_000095	exon17	c.G1981A	p.E661K	.	.	115	7	29	0	.	90
COPB2	9276	hgsc.bcm.edu;bcgsc.ca	37	3	139077081	139077081	+	Silent	SNP	C	C	T	rs141832843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COPB2	NM_004766	exon21	c.G2586A	p.P862P	.	.	498	30	310	0	C|0.997;T|0.003	92
COPG1	22820	bcgsc.ca	37	3	128976396	128976396	+	Silent	SNP	T	T	C	rs4927910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016128	exon9	c.T663C	p.H221H	.	.	138	13	43	0	T|0.755;C|0.245	.
COPG1	22820	bcgsc.ca	37	3	128984583	128984583	+	Silent	SNP	C	C	T	rs79239356	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016128	exon14	c.C1416T	p.Y472Y	.	.	157	12	61	0	C|0.957;T|0.043	.
COPG1	22820	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128994119	128994119	+	Silent	SNP	C	C	T	rs79019010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016128	exon23	c.C2478T	p.H826H	.	.	156	21	45	0	C|0.991;T|0.009	.
COQ3	51805	bcgsc.ca	37	6	99825348	99825348	+	Missense_Mutation	SNP	T	T	C	rs11548336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COQ3	NM_017421	exon4	c.A400G	p.K134E	.	.	143	9	46	0	T|0.701;C|0.299	91
COQ5	84274	bcgsc.ca	37	12	120954490	120954490	+	Missense_Mutation	SNP	C	C	T	rs3742049	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COQ5	NM_032314	exon3	c.G454A	p.A152T	.	.	207	10	73	0	C|0.846;T|0.154	91
COQ6	51004	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74428445	74428445	+	Missense_Mutation	SNP	G	G	A	rs8500	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COQ6	NM_182476	exon11	c.G1216A	p.V406M	.	.	98	16	39	0	G|0.641;A|0.359	90
COX10	1352	bcgsc.ca	37	17	14005439	14005439	+	Silent	SNP	G	G	A	rs2159132	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COX10	NM_001303	exon4	c.G504A	p.L168L	.	.	258	12	75	0	G|0.468;A|0.532	226
COX1	5742	bcgsc.ca	37	MT	6221	6221	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361624	exon1	c.T318C	p.P106P	.	.	429	19	439	1	.	.
COX1	5742	bcgsc.ca	37	MT	7028	7028	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361624	exon1	c.C1125T	p.A375A	.	.	335	14	428	0	.	.
COX18	285521	bcgsc.ca	37	4	73930552	73930552	+	Silent	SNP	G	G	A	rs3762883	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COX18	NM_173827	exon4	c.C663T	p.P221P	.	.	297	16	126	0	T|0.074;G|0.506;C|0.144;A|0.276	90
COX2	5743	bcgsc.ca	37	MT	7609	7609	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361739	exon1	c.T24C	p.G8G	.	.	359	115	504	3	.	.
COX2	5743	bcgsc.ca	37	MT	8155	8155	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361739	exon1	c.G570A	p.G190G	.	.	378	20	476	0	.	.
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	8102	8102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361739	exon1	c.G517A	p.D173N	.	.	397	46	474	1	.	.
COX3	5742	bcgsc.ca	37	MT	9449	9449	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000362079	exon1	c.C243T	p.Y81Y	.	.	393	24	484	0	.	.
COX3	5742	bcgsc.ca	37	MT	9540	9540	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000362079	exon1	c.T334C	p.L112L	.	.	411	33	493	0	.	.
COX4I1	1327	bcgsc.ca	37	16	85834818	85834818	+	Missense_Mutation	SNP	G	G	A	rs11557187	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	COX4I1	NM_001861	exon2	c.G7A	p.A3T	.	.	333	16	134	0	A|0.091;C|0.000;G|0.909	226
CPA3	1359	bcgsc.ca	37	3	148603920	148603920	+	Missense_Mutation	SNP	G	G	A	rs61747091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPA3	NM_001870	exon10	c.G1022A	p.R341Q	.	.	171	8	57	0	G|0.939;A|0.061	154
CPA3	1359	hgsc.bcm.edu;bcgsc.ca	37	3	148599357	148599357	+	Silent	SNP	C	C	A	rs141357361	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPA3	NM_001870	exon7	c.C625A	p.R209R	.	.	127	8	46	0	C|0.997;A|0.003	154
CPAMD8	27151	bcgsc.ca	37	19	17025292	17025292	+	Missense_Mutation	SNP	G	G	A	rs706761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPAMD8	NM_015692	exon29	c.C3944T	p.T1315I	.	.	122	5	36	0	G|0.358;A|0.642	141
CPED1	79974	bcgsc.ca	37	7	120776097	120776097	+	Missense_Mutation	SNP	C	C	G	rs41281692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001105533	exon13	c.C1652G	p.A551G	.	.	148	7	105	0	C|0.571;G|0.429	.
CPED1	79974	bcgsc.ca	37	7	120780946	120780946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001105533	exon14	c.T1765C	p.F589L	.	.	144	5	70	0	.	.
CPN2	1370	bcgsc.ca	37	3	194063153	194063153	+	Silent	SNP	G	G	A	rs3732474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPN2	NM_001080513	exon2	c.C279T	p.F93F	.	.	120	7	47	0	G|0.700;A|0.300	73
CPN2	1370	ucsc.edu	37	3	194061907	194061907	+	Nonsense_Mutation	SNP	G	G	A	rs4974539	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPN2	NM_001080513	exon2	c.C1525T	p.Q509X	.	.	85	10	36	0	G|0.680;A|0.320	73
CPNE2	221184	bcgsc.ca	37	16	57147274	57147274	+	Silent	SNP	C	C	T	rs13334474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPNE2	NM_152727	exon3	c.C255T	p.F85F	.	.	84	6	57	0	C|0.986;T|0.014	91
CPNE3	8895	bcgsc.ca	37	8	87558846	87558846	+	Missense_Mutation	SNP	G	G	C	rs41333046	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPNE3	NM_003909	exon10	c.G756C	p.E252D	.	.	948	17	278	0	G|0.888;C|0.112	117
CPNE4	131034	bcgsc.ca	37	3	131624120	131624120	+	Silent	SNP	C	C	G	rs3749263	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPNE4	NM_130808	exon2	c.G168C	p.G56G	.	.	239	10	88	0	C|0.834;G|0.166	92
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	131442432	131442432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPNE4	NM_130808	exon3	c.C218T	p.P73L	.	.	175	63	47	0	.	92
CPO	130749	bcgsc.ca	37	2	207824384	207824384	+	Missense_Mutation	SNP	T	T	G	rs11903403	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPO	NM_173077	exon5	c.T402G	p.S134R	.	.	289	16	106	0	T|0.526;G|0.474	154
CPOX	1371	bcgsc.ca	37	3	98299575	98299575	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPOX	NM_000097	exon7	c.A1317G	p.E439E	.	.	127	5	42	0	.	90
CPOX	1371	bcgsc.ca	37	3	98304467	98304467	+	Silent	SNP	T	T	C	rs1729995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPOX	NM_000097	exon5	c.A990G	p.E330E	.	.	201	19	75	0	T|0.243;C|0.757	90
CPT1B	1375	bcgsc.ca	37	22	51011348	51011348	+	Silent	SNP	G	G	A	rs34744246	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPT1B	NM_001145135	exon11	c.C1308T	p.L436L	.	.	152	7	30	0	G|0.973;A|0.027	116
CPVL	54504	bcgsc.ca	37	7	29186256	29186256	+	Silent	SNP	A	A	G	rs245880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPVL	.	.	.	.	.	.	138	9	62	0	A|0.443;C|0.009	92
CPVL	54504	ucsc.edu	37	7	29186576	29186576	+	Missense_Mutation	SNP	A	A	G	rs245881	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPVL	.	.	.	.	.	.	73	7	20	0	A|0.174;G|0.826	92
CPVL	54504	bcgsc.ca	37	7	29070209	29070209	+	Missense_Mutation	SNP	G	G	A	rs7313	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPVL	NM_019029	exon12	c.C1304T	p.A435V	.	.	327	15	113	0	G|0.500;T|0.068	92
CPVL	54504	bcgsc.ca	37	7	29152371	29152371	+	Silent	SNP	G	G	A	rs323182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPVL	NM_019029	exon3	c.C237T	p.T79T	.	.	185	14	75	0	G|0.887;A|0.113	92
CPVL	54504	bcgsc.ca	37	7	29152416	29152416	+	Silent	SNP	G	G	A	rs2011337	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPVL	NM_019029	exon3	c.C192T	p.G64G	.	.	187	16	76	0	G|0.870;A|0.130	92
CPXCR1	53336	bcgsc.ca	37	X	88008807	88008807	+	Missense_Mutation	SNP	G	G	A	rs5984611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPXCR1	NM_001184771	exon3	c.G392A	p.R131H	.	.	122	11	52	0	0|0.003;A|0.269	133
CPXCR1	53336	ucsc.edu;bcgsc.ca	37	X	88008423	88008423	+	Missense_Mutation	SNP	A	A	C	rs5940915	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPXCR1	NM_001184771	exon3	c.A8C	p.Y3S	.	.	145	16	46	0	A|0.090;0|0.018	133
CPXM2	119587	bcgsc.ca	37	10	125539743	125539743	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPXM2	NM_198148	exon7	c.C918T	p.N306N	.	.	159	5	53	0	.	92
CPXM2	119587	bcgsc.ca	37	10	125557595	125557595	+	Silent	SNP	T	T	C	rs146852639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CPXM2	NM_198148	exon6	c.A786G	p.L262L	.	.	345	10	63	0	T|0.997;C|0.003	92
CR1	1378	bcgsc.ca	37	1	207753621	207753621	+	Missense_Mutation	SNP	A	A	G	rs2274567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CR1	NM_000651	exon30	c.A4973G	p.H1658R	.	.	198	7	64	0	A|0.785;G|0.214	93
CR1	1378	bcgsc.ca	37	1	207782856	207782856	+	Missense_Mutation	SNP	A	A	G	rs17047660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CR1	NM_000651	exon37	c.A6118G	p.K2040E	.	.	209	9	83	0	A|0.905;G|0.095	93
CR1	1378	bcgsc.ca	37	1	207782889	207782889	+	Missense_Mutation	SNP	A	A	G	rs17047661	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CR1	NM_000651	exon37	c.A6151G	p.R2051G	.	.	184	8	64	0	A|0.769;G|0.231	93
CR1	1378	bcgsc.ca	37	1	207782931	207782931	+	Missense_Mutation	SNP	A	A	G	rs6691117	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CR1	NM_000651	exon37	c.A6193G	p.I2065V	.	.	143	6	52	0	A|0.601;G|0.399	93
CR1	1378	bcgsc.ca	37	1	207790088	207790088	+	Missense_Mutation	SNP	C	C	G	rs3811381	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CR1	NM_000651	exon41	c.C6830G	p.P2277R	.	.	355	15	106	0	C|0.335;G|0.665	93
CRAMP1L	57585	bcgsc.ca	37	16	1682281	1682281	+	Silent	SNP	A	A	G	rs3169425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020825	exon3	c.A609G	p.A203A	.	.	128	7	48	0	A|0.586;G|0.414	.
CRAT	1384	bcgsc.ca	37	9	131866523	131866523	+	Silent	SNP	C	C	G	rs2228304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRAT	NM_000755	exon3	c.G354C	p.S118S	.	.	94	7	27	0	C|0.649;G|0.351	90
CRB1	23418	bcgsc.ca	37	1	197403849	197403849	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRB1	NM_201253	exon9	c.T2856C	p.A952A	.	.	133	5	97	0	.	161
CRB2	286204	bcgsc.ca	37	9	126129579	126129579	+	Missense_Mutation	SNP	G	G	T	rs74778545	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRB2	NM_173689	exon5	c.G883T	p.A295S	.	.	139	8	38	0	G|0.973;T|0.027	91
CREBBP	1387	bcgsc.ca	37	16	3817843	3817843	+	Missense_Mutation	SNP	G	G	A	rs61731376	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CREBBP	NM_004380	exon16	c.C3128T	p.S1043L	.	.	602	15	253	0	G|0.989;A|0.011	1807
CREBBP	1387	bcgsc.ca	37	16	3860640	3860640	+	Silent	SNP	A	A	G	rs3025702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CREBBP	NM_001079846	exon3	c.T939C	p.D313D	.	.	222	9	69	0	A|0.905;G|0.095	1807
CREBRF	153222	bcgsc.ca	37	5	172550204	172550204	+	Silent	SNP	C	C	T	rs1129146	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153607	exon8	c.C1803T	p.L601L	.	.	295	12	163	1	C|0.861;T|0.139	.
CRELD2	79174	bcgsc.ca	37	22	50313438	50313438	+	Silent	SNP	T	T	C	rs9616388	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRELD2	NM_024324	exon3	c.T273C	p.N91N	.	.	185	6	61	0	T|0.754;C|0.246	90
CRELD2	79174	bcgsc.ca	37	22	50315952	50315952	+	Silent	SNP	C	C	T	rs7410276	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRELD2	NM_001135101	exon6	c.C600T	p.T200T	.	.	125	7	52	0	C|0.827;T|0.173	90
CRELD2	79174	bcgsc.ca	37	22	50315973	50315973	+	Silent	SNP	G	G	C	rs12160965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRELD2	NM_001135101	exon6	c.G621C	p.P207P	.	.	140	9	56	0	G|0.790;C|0.210	90
CREM	1390	bcgsc.ca	37	10	35468107	35468107	+	Silent	SNP	G	G	A	rs11010115	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CREM	NM_181571	exon5	c.G312A	p.K104K	.	.	226	7	67	0	G|0.953;A|0.047	90
CRIM1	51232	bcgsc.ca	37	2	36704144	36704144	+	Silent	SNP	C	C	T	rs848547	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRIM1	NM_016441	exon6	c.C1104T	p.T368T	.	.	173	14	67	0	C|0.450;T|0.550	118
CRIP1	1396	bcgsc.ca	37	14	105954682	105954682	+	Silent	SNP	C	C	G	rs1128308	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRIP1	NM_001311	exon4	c.C150G	p.P50P	.	.	177	16	49	0	C|0.834;G|0.166	90
CRIPAK	285464	bcgsc.ca	37	4	1388788	1388788	+	Silent	SNP	C	C	T	rs139161344	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRIPAK	NM_175918	exon1	c.C489T	p.D163D	.	.	98	14	65	0	C|1.000;T|0.000	90
CRIPAK	285464	bcgsc.ca	37	4	1389007	1389007	+	Silent	SNP	C	C	T	rs78871723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRIPAK	NM_175918	exon1	c.C708T	p.C236C	.	.	137	16	62	0	C|0.902;T|0.098	90
CRIPAK	285464	bcgsc.ca	37	4	1389399	1389399	+	Missense_Mutation	SNP	G	G	A	rs142215664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRIPAK	NM_175918	exon1	c.G1100A	p.R367H	.	.	212	20	116	4	G|0.997;A|0.003	90
CRIPAK	285464	bcgsc.ca	37	4	1389404	1389404	+	Missense_Mutation	SNP	C	C	G	rs147839649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRIPAK	NM_175918	exon1	c.C1105G	p.H369D	.	.	225	17	119	6	C|0.999;G|0.001	90
CRLF2	64109	bcgsc.ca	37	X	1314931	1314931	+	Missense_Mutation	SNP	C	C	T	rs151218732		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRLF2	NM_022148	exon6	c.G730A	p.V244M	.	.	564	24	244	0	C|0.949;T|0.051	299
CRLF3	51379	bcgsc.ca	37	17	29111368	29111368	+	Missense_Mutation	SNP	A	A	G	rs11867457	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRLF3	NM_015986	exon8	c.T1166C	p.L389P	.	.	189	9	78	0	A|0.829;G|0.171	90
CRNN	49860	bcgsc.ca	37	1	152382436	152382436	+	Missense_Mutation	SNP	C	C	G	rs6695830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRNN	NM_016190	exon3	c.G1122C	p.Q374H	.	.	690	28	205	0	C|0.939;G|0.061	93
CROCC	9696	bcgsc.ca	37	1	17264920	17264920	+	Missense_Mutation	SNP	C	C	T	rs4463721	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CROCC	NM_014675	exon11	c.C1316T	p.A439V	.	.	171	9	77	0	C|0.712;T|0.288	137
CROCC	9696	bcgsc.ca	37	1	17264939	17264939	+	Silent	SNP	T	T	C	rs4558023	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CROCC	NM_014675	exon11	c.T1335C	p.D445D	.	.	162	9	73	0	T|0.699;C|0.301	137
CROCCP2	84809	bcgsc.ca	37	1	16952372	16952372	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	107	7	72	0	.	.
CRTAC1	55118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99655120	99655120	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRTAC1	NM_001206528	exon11	c.C1368T	p.A456A	.	.	69	16	17	0	.	95
CRTAM	56253	bcgsc.ca	37	11	122722440	122722440	+	Missense_Mutation	SNP	C	C	A	rs34397316	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRTAM	NM_019604	exon3	c.C233A	p.A78D	.	.	200	7	85	0	C|0.966;A|0.034	91
CRYBA1	1411	bcgsc.ca	37	17	27580756	27580756	+	Silent	SNP	C	C	T	rs1047790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRYBA1	NM_005208	exon5	c.C456T	p.G152G	.	.	105	6	32	0	C|0.756;T|0.244	90
CRYGA	1418	bcgsc.ca	37	2	209025696	209025696	+	Silent	SNP	A	A	T	rs116555712	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRYGA	NM_014617	exon3	c.T357A	p.P119P	.	.	115	7	45	0	A|0.996;T|0.004	90
CRYGA	1418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209025671	209025671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRYGA	NM_014617	exon3	c.G382A	p.E128K	.	.	114	44	35	0	.	90
CRYGS	1427	bcgsc.ca	37	3	186257312	186257312	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRYGS	NM_017541	exon2	c.A96G	p.T32T	.	.	199	6	61	0	.	90
CRYZ	1429	bcgsc.ca;mdanderson.org	37	1	75175797	75175797	+	Silent	SNP	G	G	A	rs57413593	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRYZ	NM_001130043	exon6	c.C615T	p.Y205Y	.	.	365	35	104	0	G|0.953;A|0.047	90
CRYZ	1429	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75175886	75175886	+	Missense_Mutation	SNP	T	T	C	rs3819946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CRYZ	NM_001130043	exon6	c.A526G	p.I176V	.	.	294	35	106	0	C|0.338;N|0.000	90
CSAG1	158511	bcgsc.ca	37	X	151908844	151908844	+	Missense_Mutation	SNP	A	A	T	rs36103895	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSAG1	NM_153478	exon4	c.A83T	p.Y28F	.	.	765	50	259	0	.	131
CSAG4	100130935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	151896029	151896029	+	RNA	SNP	A	A	G	rs2515827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSAG4	.	.	.	.	.	.	64	8	26	0	A|0.446;0|0.010	62
CSDA	8531	bcgsc.ca	37	12	10854625	10854625	+	Silent	SNP	G	G	A	rs10845205	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSDA	NM_003651	exon8	c.C987T	p.Y329Y	.	.	151	13	51	0	G|0.865;A|0.135	586
CSDC2	27254	bcgsc.ca	37	22	41970770	41970770	+	Silent	SNP	C	C	T	rs61743476	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSDC2	NM_014460	exon4	c.C333T	p.D111D	.	.	95	10	31	0	C|0.990;T|0.010	90
CSE1L	1434	bcgsc.ca	37	20	47688957	47688957	+	Silent	SNP	A	A	G	rs61748374	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSE1L	NM_001316	exon9	c.A903G	p.L301L	.	.	286	11	158	0	A|0.994;G|0.006	290
CSF1R	1436	bcgsc.ca	37	5	149456995	149456995	+	Missense_Mutation	SNP	C	C	A	rs41338945	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSF1R	NM_005211	exon6	c.G733T	p.A245S	.	.	338	16	205	0	C|0.973;A|0.027	2640
CSF2RA	1438	bcgsc.ca	37	X	1401646	1401646	+	Missense_Mutation	SNP	C	C	G	rs67006588	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSF2RA	NM_172247	exon1	c.C50G	p.A17G	.	.	715	49	152	0	C|0.621;G|0.379	42
CSF2RA	1438	bcgsc.ca	37	X	1407415	1407415	+	Missense_Mutation	SNP	A	A	G	rs149059494	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSF2RA	NM_172247	exon3	c.A223G	p.S75G	.	.	524	30	159	0	A|0.985;G|0.015	42
CSF2RA	1438	bcgsc.ca	37	X	1428421	1428421	+	Missense_Mutation	SNP	G	G	T	rs28722602	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSF2RA	NM_172246	exon11	c.G1073T	p.R358L	.	.	326	20	125	0	T|0.102;G|0.622;C|0.231;A|0.045	42
CSF2RB	1439	bcgsc.ca	37	22	37333936	37333936	+	Missense_Mutation	SNP	C	C	T	rs16997517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSF2RB	NM_000395	exon14	c.C2086T	p.P696S	.	.	121	5	41	0	C|0.950;T|0.050	93
CSGALNACT2	55454	bcgsc.ca	37	10	43678941	43678941	+	Missense_Mutation	SNP	C	C	T	rs61744904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSGALNACT2	NM_018590	exon8	c.C1580T	p.T527M	.	.	228	7	80	0	C|0.987;T|0.013	69
CSMD1	64478	bcgsc.ca	37	8	2820043	2820043	+	Silent	SNP	G	G	T	rs4876056	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CSMD1_ENST00000318252,NS,carcinoma,-1	CSMD1	NM_033225	exon61	c.C9573A	p.S3191S	.	.	77	4	53	0	G|0.871;T|0.129	86
CSMD2	114784	bcgsc.ca	37	1	34285342	34285342	+	Silent	SNP	G	G	A	rs17342512	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSMD2	NM_052896	exon9	c.C1176T	p.A392A	.	.	155	9	51	0	G|0.443;A|0.557	103
CSMD2	114784	bcgsc.ca	37	1	34285381	34285381	+	Silent	SNP	C	C	T	rs11578857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSMD2	NM_052896	exon9	c.G1137A	p.K379K	.	.	179	11	45	0	C|0.442;T|0.558	103
CSMD2	114784	bcgsc.ca	37	1	34401453	34401453	+	Missense_Mutation	SNP	A	A	G	rs16836099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSMD2	NM_052896	exon4	c.T500C	p.L167P	.	.	100	5	49	0	A|0.880;G|0.120	103
CSMD3	114788	bcgsc.ca	37	8	113237045	113237045	+	Silent	SNP	C	C	T	rs4876458	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSMD3	NM_198123	exon71	c.G11079A	p.A3693A	.	.	1051	20	166	0	C|0.918;T|0.082	1132
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113392672	113392672	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSMD3	NM_198123	exon38	c.C6045G	p.P2015P	.	.	184	107	31	0	.	1132
CSN1S1	1446	bcgsc.ca	37	4	70807771	70807771	+	Missense_Mutation	SNP	C	C	T	rs10030475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001890	exon13	c.C350T	p.A117V	.	.	889	24	346	0	C|0.659;T|0.341	.
CSRNP2	81566	bcgsc.ca	37	12	51457854	51457854	+	Missense_Mutation	SNP	G	G	A	rs11542510	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSRNP2	NM_030809	exon5	c.C1307T	p.T436M	.	.	140	5	56	0	G|0.950;A|0.050	90
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166535514	166535514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CSRNP3,NS,carcinoma,0	CSRNP3	NM_001172173	exon7	c.G1009T	p.D337Y	.	.	71	25	38	0	.	157
CSRP1	1465	hgsc.bcm.edu;bcgsc.ca	37	1	201459399	201459399	+	Silent	SNP	G	G	A	rs504667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSRP1	NM_001193572	exon3	c.C186T	p.Y62Y	.	.	170	10	46	0	G|0.974;A|0.026	91
CST11	140880	bcgsc.ca	37	20	23432528	23432528	+	Silent	SNP	A	A	G	rs2236021	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CST11	NM_130794	exon2	c.T258C	p.N86N	.	.	191	10	55	0	A|0.763;G|0.237	90
CST1	1469	bcgsc.ca	37	20	23731385	23731385	+	Missense_Mutation	SNP	T	T	C	rs77188058	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CST1	NM_001898	exon1	c.A119G	p.N40S	.	.	320	8	92	0	T|0.965;C|0.035	91
CST1	1469	bcgsc.ca	37	20	23731426	23731426	+	Silent	SNP	C	C	T	rs13045477	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CST1	NM_001898	exon1	c.G78A	p.E26E	.	.	213	10	65	0	C|0.665;T|0.335	91
CSTA	1475	hgsc.bcm.edu;bcgsc.ca	37	3	122060390	122060390	+	Missense_Mutation	SNP	G	G	T	rs34021626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSTA	NM_005213	exon3	c.G273T	p.K91N	.	.	94	8	52	0	G|0.984;T|0.016	90
CSTF2T	23283	bcgsc.ca	37	10	53458998	53458998	+	Silent	SNP	A	A	G	rs2292828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSTF2T	NM_015235	exon1	c.T312C	p.L104L	.	.	140	6	42	0	A|0.710;C|0.003;G|0.282;T|0.006	91
CSTL1	128817	bcgsc.ca	37	20	23424638	23424638	+	Missense_Mutation	SNP	C	C	T	rs3746737	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CSTL1	NM_138283	exon3	c.C287T	p.T96M	.	.	147	6	38	0	C|0.903;T|0.097	90
CT45A5	441521	bcgsc.ca	37	X	134948034	134948034	+	Silent	SNP	A	A	G	rs2034920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CT45A5	NM_001007551	exon3	c.T291C	p.N97N	.	.	278	15	82	0	0|0.004;T|0.049	44
CTAGE10P	220429	ucsc.edu	37	13	50466990	50466990	+	RNA	SNP	T	T	C	rs61747163		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	144	20	45	1	T|0.982;C|0.018	.
CTAGE11P	647288	bcgsc.ca	37	13	75813267	75813267	+	RNA	SNP	A	A	G	rs484946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	716	39	266	0	A|0.259;G|0.741	.
CTAGE11P	647288	bcgsc.ca	37	13	75814285	75814285	+	RNA	SNP	T	T	C	rs2876702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	849	26	329	1	T|0.898;C|0.102	.
CTAGE1	64693	bcgsc.ca	37	18	19997268	19997268	+	Silent	SNP	C	C	T	rs78862845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTAGE1	NM_172241	exon1	c.G507A	p.A169A	.	.	467	17	177	0	C|0.991;T|0.009	1
CTAGE5	4253	bcgsc.ca	37	14	39818028	39818028	+	Missense_Mutation	SNP	A	A	G	rs1140952	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTAGE5	NM_001247989	exon23	c.A2110G	p.I704V	.	.	261	13	76	0	A|0.632;G|0.368	90
CTAGE7P	119437	bcgsc.ca	37	10	131906096	131906096	+	RNA	SNP	C	C	T	rs55975328	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	545	17	193	0	C|0.841;T|0.159	.
CTAGE9	643854	bcgsc.ca	37	6	132030966	132030966	+	Missense_Mutation	SNP	G	G	C	rs4897534		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145659	exon1	c.C1192G	p.L398V	.	.	1450	30	597	0	.	.
CTAGE9	643854	mdanderson.org	37	6	132030755	132030755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145659	exon1	c.C1403T	p.A468V	.	.	1087	37	501	0	.	.
CTBP2	1488	bcgsc.ca	37	10	126715692	126715692	+	Missense_Mutation	SNP	C	C	T	rs3781408	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTBP2	NM_022802	exon1	c.G637A	p.D213N	.	.	160	6	34	0	C|0.940;T|0.060	90
CTC1	80169	ucsc.edu	37	17	8138503	8138503	+	Missense_Mutation	SNP	C	C	T	rs75790638		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTC1	NM_025099	exon8	c.G1307A	p.R436H	.	.	36	5	16	0	C|0.993;T|0.007	93
CTCFL	140690	bcgsc.ca	37	20	56087796	56087796	+	Missense_Mutation	SNP	C	C	T	rs6092491	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTCFL	NM_001269044	exon7	c.G1343A	p.R448H	.	.	173	10	53	0	C|0.986;T|0.014	292
CTLA4	1493	bcgsc.ca	37	2	204732714	204732714	+	Missense_Mutation	SNP	A	A	G	rs231775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTLA4	NM_005214	exon1	c.A49G	p.T17A	.	.	387	15	135	0	A|0.591;G|0.409	90
CTNNA1	1495	bcgsc.ca	37	5	138266546	138266546	+	Silent	SNP	G	G	A	rs1059110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTNNA1	NM_001903	exon16	c.G2220A	p.S740S	.	.	233	8	106	0	G|0.693;A|0.307	671
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	.	.	193	61	69	0	.	24361
CTPS2	56474	bcgsc.ca	37	X	16627756	16627756	+	Silent	SNP	C	C	T	rs1048392	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTPS2	NM_001144002	exon17	c.G1599A	p.P533P	.	.	141	9	72	0	0|0.003;T|0.074	228
CTR9	9646	bcgsc.ca	37	11	10785724	10785724	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTR9	NM_014633	exon10	c.A1260G	p.Q420Q	.	.	317	7	137	0	.	92
CTSE	1510	bcgsc.ca	37	1	206320280	206320280	+	Silent	SNP	C	C	T	rs146536294	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTSE	NM_001910	exon4	c.C423T	p.T141T	.	.	137	8	56	0	C|0.999;T|0.001	91
CTSE	1510	hgsc.bcm.edu;bcgsc.ca	37	1	206327553	206327553	+	Missense_Mutation	SNP	G	G	T	rs61742549	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTSE	NM_001910	exon6	c.G742T	p.V248F	.	.	253	14	53	0	G|0.997;T|0.003	91
CTSH	1512	bcgsc.ca	37	15	79224747	79224747	+	Silent	SNP	C	C	T	rs13345	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTSH	NM_004390	exon6	c.G459A	p.A153A	.	.	91	6	35	0	C|0.719;T|0.281	577
CTSL3P	392360	bcgsc.ca	37	9	90401796	90401796	+	RNA	SNP	G	G	A	rs7866968	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	191	8	58	0	G|0.993;A|0.007	.
CTSZ	1522	bcgsc.ca	37	20	57571763	57571763	+	Silent	SNP	A	A	G	rs9760	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTSZ	NM_001336	exon5	c.T732C	p.S244S	.	.	152	12	47	0	A|0.311;G|0.689	226
CTTNBP2	83992	bcgsc.ca	37	7	117351728	117351728	+	Missense_Mutation	SNP	T	T	G	rs113820495	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTTNBP2	NM_033427	exon23	c.A4855C	p.K1619Q	.	.	521	18	209	0	T|0.994;G|0.006	94
CTU2	348180	bcgsc.ca	37	16	88779077	88779077	+	Silent	SNP	G	G	A	rs138003612	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTU2	NM_001012759	exon7	c.G501A	p.L167L	.	.	260	8	74	0	G|0.992;A|0.008	23
CTU2	348180	hgsc.bcm.edu	37	16	88780150	88780150	+	Silent	SNP	C	C	T	rs2340974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CTU2	NM_001012759	exon9	c.C969T	p.S323S	.	.	90	5	42	0	C|0.985;T|0.015	23
CTXN3	613212	bcgsc.ca	37	5	126993282	126993282	+	Missense_Mutation	SNP	G	G	A	rs2280170	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001048252	exon3	c.G69A	p.M23I	.	.	333	17	109	0	G|0.917;A|0.083	.
CUBN	8029	bcgsc.ca	37	10	16877080	16877080	+	Missense_Mutation	SNP	G	G	C	rs7898873	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUBN	NM_001081	exon64	c.C10295G	p.T3432S	.	.	209	13	61	0	G|0.923;C|0.077	166
CUBN	8029	bcgsc.ca	37	10	16918972	16918972	+	Silent	SNP	A	A	G	rs1801241	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUBN	NM_001081	exon57	c.T9030C	p.A3010A	.	.	102	6	35	0	A|0.814;G|0.186	166
CUBN	8029	bcgsc.ca	37	10	16918997	16918997	+	Missense_Mutation	SNP	T	T	C	rs1801240	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUBN	NM_001081	exon57	c.A9005G	p.E3002G	.	.	102	5	29	0	T|0.878;C|0.122	166
CUBN	8029	bcgsc.ca	37	10	16949550	16949550	+	Silent	SNP	T	T	C	rs3740165	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUBN	NM_001081	exon49	c.A7662G	p.P2554P	.	.	194	7	95	0	T|0.911;C|0.089	166
CUEDC1	404093	bcgsc.ca	37	17	55945598	55945598	+	Missense_Mutation	SNP	C	C	T	rs34800498	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUEDC1	NM_001271875	exon8	c.G947A	p.R316Q	.	.	147	7	47	0	C|0.958;T|0.042	228
CUL7	9820	bcgsc.ca	37	6	43010664	43010664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUL7	NM_001168370	exon19	c.A3773G	p.E1258G	.	.	120	5	33	0	.	229
CUL9	23113	bcgsc.ca	37	6	43152366	43152366	+	Silent	SNP	C	C	A	rs41274928	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUL9	NM_015089	exon2	c.C318A	p.G106G	.	.	141	8	66	1	C|0.948;A|0.052	529
CUX2	23316	ucsc.edu;bcgsc.ca	37	12	111785586	111785586	+	Silent	SNP	T	T	C	rs3803167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CUX2	NM_015267	exon22	c.T3918C	p.D1306D	.	.	75	8	40	0	T|0.524;C|0.476	140
CWC22	57703	bcgsc.ca	37	2	180810358	180810358	+	Missense_Mutation	SNP	C	C	T	rs71425650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CWC22	NM_020943	exon20	c.G2225A	p.R742K	.	.	654	26	197	0	C|0.832;T|0.168	90
CWC27	10283	bcgsc.ca	37	5	64097145	64097145	+	Missense_Mutation	SNP	C	C	G	rs7735338	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CWC27	NM_005869	exon9	c.C766G	p.P256A	.	.	545	31	260	0	C|0.646;G|0.354	90
CWC27	10283	bcgsc.ca	37	5	64267585	64267585	+	Silent	SNP	G	G	A	rs143676351	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CWC27	NM_005869	exon12	c.G1098A	p.K366K	.	.	249	9	120	0	G|0.999;A|0.001	90
CWF19L2	143884	bcgsc.ca	37	11	107286943	107286943	+	Missense_Mutation	SNP	C	C	T	rs17106909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CWF19L2	NM_152434	exon10	c.G1609A	p.G537R	.	.	314	11	126	1	C|0.932;T|0.068	68
CX3CR1	1524	bcgsc.ca	37	3	39307962	39307962	+	Missense_Mutation	SNP	C	C	A	rs41535248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CX3CR1	NM_001171174	exon2	c.G135T	p.E45D	.	.	267	9	113	0	C|0.992;A|0.008	658
CXADRP2	646243	bcgsc.ca	37	15	22015955	22015955	+	RNA	SNP	G	G	C	rs58667873	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	386	15	117	0	G|0.500;C|0.500	.
CXCR5	643	bcgsc.ca	37	11	118764382	118764382	+	Silent	SNP	G	G	T	rs2230319	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXCR5	NM_001716	exon2	c.G129T	p.G43G	.	.	97	6	54	0	G|0.952;T|0.048	721
CXorf21	80231	ucsc.edu;mdanderson.org	37	X	30577846	30577846	+	Silent	SNP	A	A	C	rs887369	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf21	NM_025159	exon3	c.T627G	p.V209V	.	.	159	21	57	1	A|0.160;0|0.002	131
CXorf22	170063	bcgsc.ca	37	X	35938045	35938045	+	Silent	SNP	C	C	T	rs6629019	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf22	NM_152632	exon1	c.C129T	p.I43I	.	.	86	7	34	0	C|0.834;T|0.166	131
CXorf22	170063	bcgsc.ca	37	X	36007614	36007614	+	Missense_Mutation	SNP	T	T	G	rs6629027	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf22	NM_152632	exon16	c.T2892G	p.F964L	.	.	219	18	72	0	0|0.015;G|0.213	131
CXorf57	55086	bcgsc.ca	37	X	105883826	105883826	+	Missense_Mutation	SNP	T	T	G	rs5962707	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf57	NM_018015	exon10	c.T1779G	p.I593M	.	.	388	21	139	0	0|0.014;G|0.148	131
CXorf58	254158	bcgsc.ca	37	X	23933852	23933852	+	Silent	SNP	G	G	A	rs147600631	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf58	NM_152761	exon4	c.G252A	p.V84V	.	.	221	9	99	0	G|0.980;A|0.020	130
CXorf65	158830	hgsc.bcm.edu;ucsc.edu	37	X	70325963	70325963	+	Missense_Mutation	SNP	G	G	A	rs138480889	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf65	NM_001025265	exon3	c.C137T	p.T46M	.	.	84	10	24	0	G|0.998;A|0.002	130
CXorf66	347487	bcgsc.ca	37	X	139038443	139038443	+	Missense_Mutation	SNP	G	G	A	rs5955139	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CXorf66	NM_001013403	exon3	c.C698T	p.P233L	.	.	297	16	170	1	0|0.012;A|0.331	130
CYBA	1535	hgsc.bcm.edu;bcgsc.ca	37	16	88713224	88713224	+	Missense_Mutation	SNP	C	C	T	rs149344911	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYBA	NM_000101	exon4	c.G226A	p.V76M	.	.	39	7	21	0	C|0.997;T|0.003	90
CYBB	1536	bcgsc.ca	37	X	37663234	37663234	+	Silent	SNP	G	G	A	rs2228117	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYBB	NM_000397	exon9	c.G1002A	p.K334K	.	.	188	14	75	0	0|0.006;A|0.061	130
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156757852	156757852	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYFIP2	NM_001037332	exon20	c.C2259T	p.H753H	.	.	155	56	105	0	.	22
CYLC1	1538	ucsc.edu;bcgsc.ca	37	X	83128911	83128911	+	Missense_Mutation	SNP	G	G	C	rs12008888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYLC1	NM_021118	exon4	c.G1195C	p.D399H	.	.	107	12	75	0	0|0.017;C|0.055	112
CYP11B2	1585	bcgsc.ca	37	8	143994253	143994253	+	Silent	SNP	C	C	T	rs5313	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP11B2	NM_000498	exon7	c.G1170A	p.L390L	.	.	255	8	36	0	C|0.890;T|0.110	90
CYP26B1	56603	bcgsc.ca	37	2	72361960	72361960	+	Missense_Mutation	SNP	A	A	G	rs2241057	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP26B1	NM_019885	exon4	c.T791C	p.L264S	.	.	253	13	65	0	A|0.814;G|0.186	92
CYP26B1	56603	hgsc.bcm.edu;bcgsc.ca	37	2	72374849	72374849	+	Missense_Mutation	SNP	C	C	T	rs149453254	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP26B1	NM_019885	exon1	c.G115A	p.A39T	.	.	64	6	42	0	C|0.999;T|0.001	92
CYP2A13	1553	bcgsc.ca	37	19	41596451	41596451	+	Silent	SNP	G	G	C	rs147780705	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2A13	NM_000766	exon4	c.G636C	p.T212T	.	.	145	6	47	0	G|0.997;C|0.003	93
CYP2A13	1553	bcgsc.ca	37	19	41597751	41597751	+	Missense_Mutation	SNP	C	C	T	rs8192789	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2A13	NM_000766	exon5	c.C769T	p.R257C	.	.	402	17	138	0	C|0.938;T|0.062	93
CYP2A6	1548	bcgsc.ca	37	19	41351267	41351267	+	Missense_Mutation	SNP	C	C	T	rs28399454	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2A6	NM_000762	exon7	c.G1093A	p.V365M	.	.	381	17	126	0	C|0.964;T|0.036	92
CYP2A7	1549	bcgsc.ca	37	19	41383153	41383153	+	Missense_Mutation	SNP	A	A	G	rs2261144	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2A7	NM_000764	exon7	c.T1103C	p.M368T	.	.	298	10	117	0	A|0.704;G|0.296	93
CYP2A7	1549	bcgsc.ca	37	19	41383799	41383799	+	Missense_Mutation	SNP	G	G	A	rs72552277	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2A7	NM_000764	exon6	c.C931T	p.R311C	.	.	454	31	146	1	G|0.473;A|0.527	93
CYP2B6	1555	bcgsc.ca	37	19	41512841	41512841	+	Missense_Mutation	SNP	G	G	T	rs56308434		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2B6	NM_000767	exon4	c.G516T	p.Q172H	.	.	209	11	78	0	.	92
CYP2C19	1557	bcgsc.ca	37	10	96522561	96522561	+	Silent	SNP	T	T	C	rs17885098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2C19	NM_000769	exon1	c.T99C	p.P33P	.	.	319	25	101	0	T|0.918;C|0.082	95
CYP2C8	1558	bcgsc.ca	37	10	96826966	96826966	+	Silent	SNP	C	C	T	rs11572081	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2C8	NM_000770	exon3	c.G480A	p.K160K	.	.	160	13	60	0	C|0.947;T|0.053	90
CYP2C9	1559	bcgsc.ca	37	10	96702066	96702066	+	Missense_Mutation	SNP	G	G	A	rs7900194	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2C9	NM_000771	exon3	c.G449A	p.R150H	.	.	214	8	96	0	A|0.019;G|0.981	96
CYP2F1	1572	bcgsc.ca	37	19	41627868	41627868	+	Missense_Mutation	SNP	G	G	A	rs80319612	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2F1	NM_000774	exon6	c.G652A	p.D218N	.	.	249	15	82	0	G|0.637;A|0.363	90
CYP2F1	1572	ucsc.edu	37	19	41622189	41622189	+	Silent	SNP	G	G	A	rs305968	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP2F1	NM_000774	exon2	c.G96A	p.P32P	.	.	142	15	71	1	G|0.601;A|0.399	90
CYP3A7	1551	bcgsc.ca	37	7	99319946	99319946	+	Missense_Mutation	SNP	C	C	T	rs149819141		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP3A7	NM_000765	exon3	c.G191A	p.C64Y	.	.	267	7	140	0	C|1.000;T|0.000	91
CYP4A22	284541	bcgsc.ca	37	1	47606517	47606517	+	Silent	SNP	T	T	C	rs17109741	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4A22	NM_001010969	exon2	c.T261C	p.P87P	.	.	177	11	76	0	T|0.969;C|0.031	139
CYP4B1	1580	bcgsc.ca	37	1	47280859	47280859	+	Missense_Mutation	SNP	G	G	A	rs2297810	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4B1	NM_001099772	exon8	c.G996A	p.M332I	.	.	149	6	53	0	G|0.736;A|0.264	92
CYP4B1	1580	bcgsc.ca	37	1	47280884	47280884	+	Missense_Mutation	SNP	C	C	T	rs4646491	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4B1	NM_001099772	exon8	c.C1021T	p.R341C	.	.	122	6	57	0	C|0.863;T|0.137	92
CYP4F11	57834	bcgsc.ca	37	19	16025176	16025176	+	Missense_Mutation	SNP	C	C	T	rs1060463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4F11	NM_001128932	exon12	c.G1336A	p.D446N	.	.	156	14	46	0	C|0.473;T|0.527	91
CYP4F11	57834	bcgsc.ca	37	19	16040292	16040292	+	Silent	SNP	A	A	G	rs3765070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4F11	NM_001128932	exon3	c.T318C	p.I106I	.	.	149	10	54	0	A|0.476;G|0.524	91
CYP4F12	66002	bcgsc.ca	37	19	15784377	15784377	+	Missense_Mutation	SNP	C	C	T	rs16995376	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4F12	NM_023944	exon2	c.C38T	p.P13L	.	.	174	18	43	0	C|0.775;T|0.225	95
CYP4F12	66002	bcgsc.ca	37	19	15807305	15807305	+	Silent	SNP	T	T	C	rs688755	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4F12	NM_023944	exon12	c.T1380C	p.P460P	.	.	189	16	47	0	T|0.764;C|0.236	95
CYP4F12	66002	bcgsc.ca	37	19	15807830	15807830	+	Silent	SNP	T	T	C	rs593421	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4F12	NM_023944	exon13	c.T1510C	p.L504L	.	.	129	11	62	0	T|0.770;C|0.230	95
CYP4F12	66002	bcgsc.ca	37	19	15807884	15807884	+	Missense_Mutation	SNP	A	A	G	rs593818	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4F12	NM_023944	exon13	c.A1564G	p.S522G	.	.	138	10	87	0	A|0.395;G|0.605	95
CYP4V2	285440	bcgsc.ca	37	4	187118720	187118720	+	Missense_Mutation	SNP	G	G	A	rs34331648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4V2	NM_207352	exon5	c.G638A	p.S213N	.	.	149	9	76	0	G|0.973;A|0.027	90
CYP4V2	285440	bcgsc.ca	37	4	187126449	187126449	+	Silent	SNP	C	C	T	rs10029149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYP4V2	NM_207352	exon8	c.C1083T	p.D361D	.	.	258	16	107	0	C|0.908;T|0.092	90
CYTB	0	bcgsc.ca	37	MT	14766	14766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361789	exon1	c.C20T	p.T7I	.	.	644	35	633	1	.	.
CYTB	0	bcgsc.ca	37	MT	15301	15301	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361789	exon1	c.G555A	p.L185L	.	.	419	18	473	0	.	.
CYTB	0	bcgsc.ca	37	MT	15311	15311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361789	exon1	c.A565G	p.I189V	.	.	426	18	490	0	.	.
CYTB	0	bcgsc.ca	37	MT	15824	15824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361789	exon1	c.A1078G	p.T360A	.	.	431	32	519	1	.	.
CYTH2	9266	bcgsc.ca	37	19	48977479	48977479	+	Silent	SNP	C	C	T	rs61748773	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYTH2	NM_017457	exon7	c.C588T	p.N196N	.	.	146	7	53	0	C|0.937;T|0.063	228
CYYR1	116159	hgsc.bcm.edu;bcgsc.ca	37	21	27852641	27852641	+	Missense_Mutation	SNP	C	C	T	rs35253087	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	CYYR1	NM_052954	exon3	c.G284A	p.R95H	.	.	133	8	45	0	C|0.976;T|0.024	90
DAB2IP	153090	hgsc.bcm.edu;bcgsc.ca	37	9	124526077	124526077	+	Missense_Mutation	SNP	C	C	T	rs76191175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DAB2IP	NM_032552	exon8	c.C1295T	p.S432L	.	.	145	8	61	0	C|0.993;T|0.007	91
DAO	1610	bcgsc.ca	37	12	109281310	109281310	+	Silent	SNP	G	G	A	rs7980427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DAO	NM_001917	exon3	c.G279A	p.S93S	.	.	178	9	87	0	G|0.855;A|0.145	92
DAOA	267012	bcgsc.ca	37	13	106124993	106124993	+	Missense_Mutation	SNP	A	A	T	rs72549478		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DAOA	NM_001161812	exon3	c.A47T	p.H16L	.	.	429	16	172	0	A|0.998;T|0.002	90
DAOA	267012	bcgsc.ca	37	13	106142374	106142374	+	Missense_Mutation	SNP	C	C	G	rs72549493		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DAOA	NM_172370	exon4	c.C406G	p.Q136E	.	.	116	5	50	0	C|0.998;G|0.002	90
DAPK1	1612	bcgsc.ca	37	9	90266627	90266627	+	Silent	SNP	C	C	T	rs36214023	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DAPK1	NM_004938	exon17	c.C1812T	p.D604D	.	.	119	5	58	0	C|0.943;T|0.057	359
DAPP1	27071	bcgsc.ca	37	4	100784980	100784980	+	Silent	SNP	C	C	T	rs3737484	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DAPP1	NM_014395	exon7	c.C654T	p.F218F	.	.	105	8	61	0	C|0.705;T|0.295	93
DAW1	164781	ucsc.edu;bcgsc.ca	37	2	228758580	228758580	+	Silent	SNP	G	G	C	rs16824157	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	WDR69,NS,carcinoma,+1	.	NM_178821	exon5	c.G387C	p.T129T	.	.	129	12	43	0	G|0.928;C|0.072	.
DBC1	1620	bcgsc.ca	37	9	121929575	121929575	+	Silent	SNP	T	T	C	rs28453	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DBC1	NM_014618	exon8	c.A2073G	p.S691S	.	.	133	6	68	0	T|0.799;C|0.201	582
DBC1	1620	bcgsc.ca	37	9	121930364	121930364	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DBC1	NM_014618	exon8	c.C1284T	p.C428C	.	.	82	6	29	0	.	582
DBF4B	80174	bcgsc.ca	37	17	42786208	42786208	+	Splice_Site	SNP	G	G	T	rs34198215	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DBF4B	NM_145663	exon1	c.19+1G>T	.	.	.	80	5	51	0	G|0.930;T|0.070	227
DBH	1621	bcgsc.ca	37	9	136507375	136507375	+	Missense_Mutation	SNP	G	G	A	rs76819676	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DBH	NM_000787	exon3	c.G533A	p.R178Q	.	.	55	6	28	0	G|0.994;A|0.006	516
DCAF12L2	340578	ucsc.edu;bcgsc.ca	37	X	125298690	125298690	+	Silent	SNP	G	G	A	rs3761552	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCAF12L2	NM_001013628	exon1	c.C1218T	p.C406C	.	.	168	24	48	0	G|0.438;A|0.562	113
DCAF12L2	340578	ucsc.edu;bcgsc.ca	37	X	125299467	125299467	+	Missense_Mutation	SNP	G	G	T	rs10126452	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCAF12L2	NM_001013628	exon1	c.C441A	p.H147Q	.	.	116	13	48	0	G|0.479;T|0.521	113
DCAF8L1	139425	bcgsc.ca	37	X	27999146	27999146	+	Silent	SNP	C	C	T	rs41311803	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCAF8L1	NM_001017930	exon1	c.G306A	p.E102E	.	.	183	10	58	0	C|0.904;T|0.096	112
DCAF8L2	347442	bcgsc.ca	37	X	27766776	27766776	+	Silent	SNP	G	G	A	rs45553337	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCAF8L2	NM_001136533	exon1	c.G1764A	p.T588T	.	.	159	10	42	0	G|0.816;A|0.184	42
DCBLD2	131566	bcgsc.ca	37	3	98520456	98520456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCBLD2	NM_080927	exon14	c.T1708C	p.W570R	.	.	77	4	33	0	.	92
DCC	1630	bcgsc.ca	37	18	50278686	50278686	+	Silent	SNP	G	G	A	rs13381333	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCC	NM_005215	exon2	c.G354A	p.E118E	.	.	187	8	82	0	G|0.889;A|0.111	225
DCC	1630	bcgsc.ca	37	18	50432602	50432602	+	Missense_Mutation	SNP	C	C	G	rs2229080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCC	NM_005215	exon3	c.C601G	p.R201G	.	.	136	5	53	0	C|0.604;G|0.396	225
DCC	1630	bcgsc.ca	37	18	50683727	50683727	+	Silent	SNP	T	T	A	rs45447193	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCC	NM_005215	exon8	c.T1263A	p.A421A	.	.	178	7	36	0	T|0.976;A|0.024	225
DCDC1	341019	bcgsc.ca	37	11	31327316	31327316	+	Silent	SNP	C	C	T	rs2616815	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCDC1	NM_181807	exon6	c.G600A	p.E200E	.	.	167	10	49	0	C|0.298;T|0.702	91
DCHS2	54798	bcgsc.ca	37	4	155157531	155157531	+	Missense_Mutation	SNP	C	C	T	rs6824133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCHS2	NM_017639	exon25	c.G6908A	p.S2303N	.	.	434	13	143	0	C|0.949;T|0.051	94
DCHS2	54798	bcgsc.ca	37	4	155219373	155219373	+	Silent	SNP	A	A	G	rs17031391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCHS2	NM_017639	exon18	c.T4728C	p.V1576V	.	.	352	10	129	0	A|0.913;G|0.087	94
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36699915	36699915	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCLK1	NM_004734	exon2	c.G360C	p.L120L	.	.	52	21	22	0	.	826
DCST1	149095	bcgsc.ca	37	1	155013965	155013965	+	Silent	SNP	G	G	A	rs111387318	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCST1	NM_152494	exon7	c.G624A	p.T208T	.	.	133	7	41	0	G|0.992;A|0.008	92
DCTN4	51164	ucsc.edu;bcgsc.ca	37	5	150097883	150097883	+	Missense_Mutation	SNP	G	G	C	rs11954652	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DCTN4	NM_001135643	exon12	c.C1047G	p.F349L	.	.	146	16	40	1	G|0.780;C|0.220	90
DDB1	1642	bcgsc.ca	37	11	61081141	61081141	+	Silent	SNP	G	G	A	rs2230357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDB1	NM_001923	exon16	c.C1899T	p.T633T	.	.	122	5	68	0	G|0.956;A|0.044	661
DDC	1644	bcgsc.ca	37	7	50607694	50607694	+	Silent	SNP	G	G	A	rs11575302	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDC	NM_001082971	exon3	c.C234T	p.A78A	.	.	109	6	31	0	G|0.948;A|0.052	92
DDN	23109	bcgsc.ca	37	12	49390677	49390677	+	Missense_Mutation	SNP	T	T	C	rs10783299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDN	NM_015086	exon2	c.A1982G	p.E661G	.	.	136	7	48	0	T|0.587;C|0.413	90
DDN	23109	bcgsc.ca	37	12	49391586	49391586	+	Missense_Mutation	SNP	G	G	C	rs61552095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDN	NM_015086	exon2	c.C1073G	p.P358R	.	.	141	10	40	0	G|0.962;C|0.038	90
DDOST	1650	bcgsc.ca	37	1	20982631	20982631	+	Silent	SNP	G	G	A	rs4704	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDOST	NM_005216	exon3	c.C366T	p.G122G	.	.	163	15	56	0	G|0.379;A|0.621	90
DDR1	780	bcgsc.ca	37	6	30865904	30865904	+	Silent	SNP	G	G	A	rs35986185	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDR1	NM_013994	exon15	c.G2289A	p.L763L	.	.	91	6	43	0	G|0.983;A|0.017	1403
DDR2	4921	bcgsc.ca	37	1	162737116	162737116	+	Silent	SNP	C	C	G	rs2298258	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDR2	NM_001014796	exon12	c.C1260G	p.L420L	.	.	311	9	101	0	C|0.718;G|0.282	1464
DDX10	1662	bcgsc.ca	37	11	108559691	108559691	+	Missense_Mutation	SNP	A	A	G	rs138543405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX10	NM_004398	exon7	c.A877G	p.I293V	.	.	220	10	91	0	A|0.999;G|0.001	1145
DDX11	1663	bcgsc.ca	37	12	31255405	31255405	+	Silent	SNP	C	C	T	rs77340729	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX11	NM_030653	exon23	c.C2316T	p.L772L	.	.	375	16	153	0	C|0.951;T|0.049	229
DDX18	8886	bcgsc.ca	37	2	118583940	118583940	+	Silent	SNP	C	C	T	rs2303348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX18	NM_006773	exon11	c.C1617T	p.R539R	.	.	128	9	52	0	C|0.689;T|0.311	290
DDX19B	11269	bcgsc.ca	37	16	70351429	70351429	+	Silent	SNP	C	C	G	rs7195567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX19B	NM_007242	exon5	c.C327G	p.A109A	.	.	174	10	82	0	C|0.926;G|0.074	226
DDX24	57062	hgsc.bcm.edu;bcgsc.ca	37	14	94526812	94526812	+	Silent	SNP	C	C	T	rs11845400	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX24	NM_020414	exon5	c.G1545A	p.Q515Q	.	.	286	14	148	0	C|0.952;T|0.048	228
DDX25	29118	hgsc.bcm.edu;bcgsc.ca	37	11	125778305	125778305	+	Silent	SNP	C	C	T	rs34007659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX25	NM_013264	exon6	c.C414T	p.N138N	.	.	235	11	97	0	C|0.985;T|0.015	227
DDX31	64794	bcgsc.ca	37	9	135521416	135521416	+	Missense_Mutation	SNP	C	C	T	rs113368486	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX31	NM_022779	exon13	c.G1561A	p.E521K	.	.	110	6	34	0	C|0.983;T|0.017	226
DDX43	55510	bcgsc.ca	37	6	74125875	74125875	+	Missense_Mutation	SNP	A	A	G	rs311686	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX43	NM_018665	exon16	c.A1873G	p.K625E	.	.	163	10	85	0	A|0.517;G|0.483	229
DDX43	55510	bcgsc.ca	37	6	74125888	74125888	+	Missense_Mutation	SNP	A	A	G	rs311685	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX43	NM_018665	exon16	c.A1886G	p.Q629R	.	.	156	10	92	0	T|0.110;G|0.374	229
DDX4	54514	bcgsc.ca	37	5	55086497	55086497	+	Silent	SNP	T	T	G	rs61748223	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX4	NM_024415	exon16	c.T1266G	p.T422T	.	.	86	5	41	0	T|0.929;G|0.071	227
DDX49	54555	bcgsc.ca	37	19	19035485	19035485	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX49	NM_019070	exon8	c.G906A	p.L302L	.	.	141	5	37	0	.	227
DDX51	317781	bcgsc.ca	37	12	132626425	132626425	+	Missense_Mutation	SNP	G	G	A	rs60927391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX51	NM_175066	exon6	c.C965T	p.A322V	.	.	197	10	76	0	G|0.765;A|0.235	227
DDX51	317781	bcgsc.ca	37	12	132626427	132626427	+	Silent	SNP	C	C	T	rs116281803	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX51	NM_175066	exon6	c.G963A	p.L321L	.	.	197	10	77	0	C|0.986;T|0.014	227
DDX55	57696	bcgsc.ca	37	12	124092004	124092004	+	Missense_Mutation	SNP	C	C	T	rs80215100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX55	NM_020936	exon4	c.C272T	p.T91I	.	.	495	15	158	0	C|0.999;T|0.001	227
DDX55	57696	bcgsc.ca	37	12	124097766	124097766	+	Missense_Mutation	SNP	A	A	G	rs11057306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX55	NM_020936	exon8	c.A791G	p.N264S	.	.	324	13	100	0	A|0.821;G|0.179	227
DDX58	23586	bcgsc.ca	37	9	32487521	32487521	+	Silent	SNP	T	T	C	rs2274863	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX58	NM_014314	exon9	c.A1323G	p.T441T	.	.	246	12	127	0	T|0.921;C|0.079	230
DDX58	23586	bcgsc.ca	37	9	32492529	32492529	+	Missense_Mutation	SNP	G	G	A	rs55789327	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX58	NM_014314	exon4	c.C431T	p.S144F	.	.	231	10	89	1	G|0.972;A|0.028	230
DDX60	55601	bcgsc.ca	37	4	169197297	169197297	+	Missense_Mutation	SNP	C	C	T	rs550625	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX60	NM_017631	exon15	c.G2014A	p.V672M	.	.	220	13	74	0	C|0.882;T|0.118	25
DDX60	55601	hgsc.bcm.edu;bcgsc.ca	37	4	169158470	169158470	+	Missense_Mutation	SNP	G	G	C	rs139699246	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DDX60	NM_017631	exon32	c.C4378G	p.L1460V	.	.	206	12	97	0	G|0.999;C|0.001	25
DEF8	54849	ucsc.edu;bcgsc.ca	37	16	90032296	90032296	+	Silent	SNP	T	T	G	rs11861894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEF8	NM_207514	exon13	c.T1464G	p.T488T	.	.	97	9	45	0	T|0.860;G|0.140	68
DEFA1	1667	bcgsc.ca	37	8	6873581	6873581	+	Silent	SNP	C	C	T	rs150008781	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_004084	exon3	c.G216A	p.A72A	.	.	645	36	307	0	C|0.987;T|0.013	.
DEFA6	1671	bcgsc.ca	37	8	6783459	6783459	+	Silent	SNP	A	A	C	rs13439322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEFA6	NM_001926	exon1	c.T99G	p.A33A	.	.	78	5	27	0	A|0.948;C|0.052	90
DEFB131	644414	bcgsc.ca	37	4	9452223	9452223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEFB131	NM_001040448	exon2	c.G196A	p.G66R	.	.	681	23	348	0	.	68
DEK	7913	bcgsc.ca;mdanderson.org	37	6	18237661	18237661	+	Silent	SNP	C	C	T	rs1013062	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEK	NM_003472	exon8	c.G849A	p.K283K	.	.	1082	71	387	1	C|0.837;T|0.163	658
DEK	7913	ucsc.edu;bcgsc.ca	37	6	18264210	18264210	+	Silent	SNP	G	G	A	rs11544757	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEK	NM_003472	exon2	c.C9T	p.A3A	.	.	57	7	27	0	T|0.050;G|0.588;C|0.250;A|0.112	658
DENND1A	57706	bcgsc.ca	37	9	126520068	126520068	+	Silent	SNP	T	T	C	rs9785285	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DENND1A	NM_024820	exon5	c.A216G	p.T72T	.	.	102	8	47	0	T|0.658;C|0.342	92
DENND4B	9909	ucsc.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DENND4B	NM_014856	exon18	c.G2712A	p.Q904Q	.	.	90	1	16	0	.	69
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	19332034	19332034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DENND4C	NM_017925	exon17	c.C2312T	p.A771V	.	.	484	88	198	0	.	92
DENND5B	160518	bcgsc.ca	37	12	31552665	31552665	+	Silent	SNP	G	G	A	rs115002257	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DENND5B	NM_144973	exon16	c.C2991T	p.H997H	.	.	304	8	97	0	G|0.990;A|0.010	24
DEPDC1	55635	bcgsc.ca	37	1	68960349	68960349	+	Silent	SNP	T	T	C	rs78030459	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEPDC1	NM_017779	exon2	c.A78G	p.A26A	.	.	726	46	276	0	T|0.936;C|0.064	90
DEPDC1	55635	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68948280	68948280	+	Missense_Mutation	SNP	A	A	C	rs3790479	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEPDC1	NM_001114120	exon8	c.T1211G	p.I404R	.	.	528	53	292	0	A|0.929;C|0.071	90
DEPDC4	120863	bcgsc.ca	37	12	100657464	100657464	+	Missense_Mutation	SNP	T	T	C	rs7307415	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DEPDC4	NM_152317	exon2	c.A365G	p.H122R	.	.	177	14	74	0	T|0.876;C|0.124	90
DERL3	91319	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24179132	24179132	+	Missense_Mutation	SNP	G	G	A	rs1128127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DERL3	NM_001002862	exon7	c.C632T	p.A211V	.	.	538	54	49	0	G|0.750;A|0.250	91
DGKA	1606	bcgsc.ca	37	12	56336019	56336019	+	Silent	SNP	T	T	C	rs150105906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DGKA	NM_201554	exon17	c.T1398C	p.D466D	.	.	430	16	145	0	T|0.999;C|0.001	255
DGKG	1608	bcgsc.ca	37	3	186006618	186006618	+	Missense_Mutation	SNP	G	G	C	rs1004588	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DGKG	NM_001346	exon6	c.C425G	p.T142S	.	.	177	12	56	0	G|0.509;C|0.491	714
DGKH	160851	bcgsc.ca	37	13	42752288	42752288	+	Silent	SNP	C	C	T	rs35357520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DGKH	NM_001204504	exon14	c.C1470T	p.D490D	.	.	126	6	50	0	C|0.992;T|0.008	652
DGKQ	1609	bcgsc.ca	37	4	960552	960552	+	Silent	SNP	C	C	T	rs150113073		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DGKQ	NM_001347	exon11	c.G1350A	p.A450A	.	.	139	5	38	0	C|1.000;T|0.000	537
DHDH	27294	bcgsc.ca	37	19	49442735	49442735	+	Silent	SNP	C	C	T	rs2270940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHDH	NM_014475	exon4	c.C396T	p.S132S	.	.	172	11	57	0	C|0.924;T|0.076	90
DHRS4L2	317749	bcgsc.ca	37	14	24464257	24464257	+	Missense_Mutation	SNP	G	G	A	rs148508271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHRS4L2	NM_198083	exon3	c.G323A	p.G108E	.	.	313	12	91	0	G|0.984;A|0.016	91
DHRSX	207063	bcgsc.ca	37	X	2139186	2139186	+	Missense_Mutation	SNP	C	C	T	rs12010	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_145177	exon7	c.G889A	p.E297K	.	.	801	30	264	0	C|0.668;T|0.332	.
DHX29	54505	bcgsc.ca	37	5	54572163	54572163	+	Silent	SNP	T	T	C	rs3761764	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHX29	NM_019030	exon14	c.A2358G	p.K786K	.	.	742	30	261	0	T|0.831;C|0.169	229
DHX30	22907	bcgsc.ca	37	3	47891036	47891036	+	Silent	SNP	C	C	T	rs9871162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHX30	NM_138615	exon20	c.C3183T	p.T1061T	.	.	123	10	36	0	C|0.949;T|0.051	228
DHX36	170506	bcgsc.ca	37	3	154002684	154002684	+	Silent	SNP	A	A	G	rs16823843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHX36	NM_020865	exon18	c.T2124C	p.F708F	.	.	231	19	122	0	A|0.952;G|0.048	226
DHX37	57647	bcgsc.ca	37	12	125441359	125441359	+	Silent	SNP	T	T	C	rs10773127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHX37	NM_032656	exon18	c.A2331G	p.T777T	.	.	96	7	34	0	T|0.608;C|0.392	227
DHX38	9785	bcgsc.ca	37	16	72135408	72135408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHX38	NM_014003	exon11	c.A1396G	p.K466E	.	.	64	4	34	0	.	227
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72132927	72132927	+	Missense_Mutation	SNP	G	G	T	rs143671341	byfrequency;alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DHX38	NM_014003	exon6	c.G866T	p.R289L	.	.	61	18	30	0	G|0.999;A|0.001	227
DIDO1	11083	bcgsc.ca	37	20	61513649	61513649	+	Missense_Mutation	SNP	G	G	T	rs6011441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DIDO1	NM_001193369	exon16	c.C3659A	p.P1220Q	.	.	297	13	101	0	A|0.000;G|0.803;T|0.197	96
DIDO1	11083	hgsc.bcm.edu;bcgsc.ca	37	20	61513135	61513135	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DIDO1	NM_001193369	exon16	c.C4173T	p.Y1391Y	.	.	115	7	45	0	.	96
DIP2B	57609	bcgsc.ca	37	12	51089734	51089734	+	Silent	SNP	T	T	A	rs11169524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DIP2B	NM_173602	exon16	c.T1917A	p.T639T	.	.	144	6	43	0	T|0.672;A|0.328	95
DIP2B	57609	bcgsc.ca	37	12	51126202	51126202	+	Silent	SNP	G	G	A	rs115732108	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DIP2B	NM_173602	exon32	c.G3864A	p.E1288E	.	.	114	6	40	0	G|0.992;A|0.008	95
DIRAS3	9077	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512441	68512441	+	Silent	SNP	A	A	G	rs61736596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DIRAS3	NM_004675	exon2	c.T540C	p.I180I	.	.	243	29	84	0	A|0.899;G|0.101	848
DISP1	84976	bcgsc.ca	37	1	223116472	223116472	+	Missense_Mutation	SNP	G	G	A	rs71583926	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DISP1	NM_032890	exon4	c.G307A	p.E103K	.	.	165	10	67	0	AAT|0.500;GAG|0.500	68
DISP1	84976	bcgsc.ca	37	1	223116474	223116474	+	Missense_Mutation	SNP	G	G	T	rs2789975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DISP1	NM_032890	exon4	c.G309T	p.E103D	.	.	166	11	69	0	G|0.844;T|0.156	68
DISP1	84976	bcgsc.ca	37	1	223178581	223178581	+	Missense_Mutation	SNP	A	A	T	rs149190569	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DISP1	NM_032890	exon10	c.A3842T	p.N1281I	.	.	224	7	62	0	A|0.997;T|0.003	68
DIXDC1	85458	bcgsc.ca	37	11	111887482	111887482	+	Silent	SNP	C	C	T	rs114428192	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DIXDC1	.	.	.	.	.	.	156	7	54	0	C|0.986;T|0.014	91
DKK2	27123	bcgsc.ca	37	4	107845728	107845728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DKK2	NM_014421	exon3	c.C503G	p.P168R	.	.	410	16	180	0	.	661
DKK4	27121	ucsc.edu;bcgsc.ca	37	8	42231786	42231786	+	Silent	SNP	G	G	A	rs2073664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DKK4	NM_014420	exon4	c.C507T	p.V169V	.	.	106	12	97	0	G|0.739;A|0.261	659
DKKL1	27120	bcgsc.ca	37	19	49867913	49867913	+	Missense_Mutation	SNP	G	G	A	rs919364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DKKL1	NM_014419	exon2	c.G85A	p.A29T	.	.	244	11	58	0	G|0.704;A|0.296	658
DLC1	10395	bcgsc.ca	37	8	13259103	13259103	+	Missense_Mutation	SNP	G	G	A	rs148727515		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLC1	NM_182643	exon3	c.C1049T	p.A350V	.	.	141	8	84	0	G|1.000;A|0.000	657
DLD	1738	bcgsc.ca	37	7	107542820	107542820	+	Silent	SNP	T	T	C	rs2228664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLD	NM_000108	exon4	c.T249C	p.V83V	.	.	706	20	235	0	A|0.000;C|0.013;T|0.987	226
DLD	1738	bcgsc.ca	37	7	107546804	107546804	+	Silent	SNP	T	T	C	rs73726765	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLD	NM_000108	exon8	c.T675C	p.G225G	.	.	665	20	243	2	T|0.985;C|0.015	226
DLD	1738	bcgsc.ca	37	7	107556043	107556043	+	Silent	SNP	A	A	G	rs1065762	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLD	NM_000108	exon9	c.A777G	p.K259K	.	.	217	10	89	0	A|0.989;G|0.011	226
DLEU2L	79469	bcgsc.ca	37	1	64015217	64015217	+	RNA	SNP	G	G	A	rs75561984		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLEU2L	.	.	.	.	.	.	177	13	110	0	.	68
DLGAP5	9787	bcgsc.ca	37	14	55619311	55619311	+	Silent	SNP	A	A	G	rs15870	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLGAP5	NM_014750	exon16	c.T2118C	p.N706N	.	.	155	7	39	0	A|0.621;G|0.379	92
DLGAP5	9787	bcgsc.ca	37	14	55643908	55643908	+	Silent	SNP	A	A	G	rs10144326	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLGAP5	NM_014750	exon8	c.T921C	p.F307F	.	.	188	9	71	0	A|0.681;G|0.319	92
DLK1	8788	ucsc.edu;bcgsc.ca	37	14	101200645	101200645	+	Silent	SNP	T	T	C	rs1802710	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLK1	NM_003836	exon5	c.T564C	p.I188I	.	.	148	14	65	0	T|0.353;C|0.647	949
DLL3	10683	hgsc.bcm.edu;bcgsc.ca	37	19	39994732	39994732	+	Missense_Mutation	SNP	G	G	A	rs35380611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DLL3	NM_016941	exon5	c.G674A	p.S225N	.	.	260	13	52	0	G|0.995;A|0.005	1083
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44684035	44684035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMAP1	NM_001034023	exon5	c.A446G	p.D149G	.	.	279	99	94	0	.	226
DMBT1	1755	bcgsc.ca	37	10	124336116	124336116	+	Missense_Mutation	SNP	G	G	A	rs200664624		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMBT1	NM_007329	exon7	c.G485A	p.G162E	.	.	139	5	43	0	G|1.000;A|0.000	494
DMBT1	1755	bcgsc.ca	37	10	124340406	124340406	+	Missense_Mutation	SNP	G	G	C	rs111575923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMBT1	NM_007329	exon11	c.G1028C	p.S343T	.	.	1090	71	283	0	G|0.920;C|0.080	494
DMBT1	1755	hgsc.bcm.edu	37	10	124358381	124358381	+	Silent	SNP	C	C	T	rs139554705		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMBT1	NM_007329	exon26	c.C3048T	p.T1016T	.	.	107	5	40	0	C|0.999;T|0.001	494
DMD	1756	bcgsc.ca	37	X	31196806	31196806	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMD	NM_004006	exon70	c.A10203G	p.L3401L	.	.	191	7	75	0	.	265
DMD	1756	bcgsc.ca	37	X	32380996	32380996	+	Missense_Mutation	SNP	C	C	T	rs1801187	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMD	NM_004006	exon37	c.G5234A	p.R1745H	.	.	247	21	100	0	0|0.010;T|0.303	265
DMD	1756	bcgsc.ca	37	X	32716110	32716110	+	Silent	SNP	C	C	T	rs1800265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMD	NM_004006	exon9	c.G837A	p.T279T	.	.	130	9	47	0	C|0.852;T|0.148	265
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32456459	32456459	+	Missense_Mutation	SNP	G	G	A	rs143184877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMD	NM_004006	exon29	c.C3970T	p.R1324C	.	.	245	19	97	0	G|0.997;A|0.003	265
DMKN	93099	bcgsc.ca	37	19	36002710	36002710	+	Silent	SNP	C	C	A	rs4806162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMKN	NM_001190347	exon4	c.G690T	p.T230T	.	.	327	14	133	0	C|0.766;A|0.234	155
DMRT2	10655	bcgsc.ca	37	9	1057204	1057204	+	Silent	SNP	A	A	G	rs4741029	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMRT2	NM_181872	exon4	c.A1617G	p.E539E	.	.	107	9	61	0	A|0.784;G|0.216	514
DMXL2	23312	bcgsc.ca	37	15	51791559	51791559	+	Missense_Mutation	SNP	A	A	G	rs12102203	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DMXL2	NM_001174116	exon18	c.T3862C	p.S1288P	.	.	232	6	95	0	A|0.527;G|0.472	99
DNA2	1763	bcgsc.ca	37	10	70209836	70209836	+	Silent	SNP	C	C	T	rs16925390		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080449	exon6	c.G888A	p.P296P	.	.	407	13	185	0	C|0.991;T|0.009	.
DNAAF1	123872	bcgsc.ca	37	16	84179056	84179056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAAF1	NM_178452	exon1	c.A11G	p.E4G	.	.	77	4	34	0	.	73
DNAAF3	352909	bcgsc.ca	37	19	55672470	55672470	+	Missense_Mutation	SNP	T	T	C	rs2365725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001256714	exon8	c.A1079G	p.E360G	.	.	96	9	52	2	T|0.756;C|0.244	.
DNAH11	8701	bcgsc.ca	37	7	21603886	21603886	+	Silent	SNP	A	A	G	rs4392792	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH11	.	.	.	.	.	.	345	19	122	0	A|0.822;G|0.178	146
DNAH1	25981	bcgsc.ca	37	3	52394028	52394028	+	Missense_Mutation	SNP	G	G	A	rs17052095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH1	NM_015512	exon27	c.G4504A	p.V1502M	.	.	131	7	41	0	G|0.976;A|0.024	67
DNAH14	127602	bcgsc.ca	37	1	225268294	225268294	+	Missense_Mutation	SNP	G	G	A	rs73133544		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH14	NM_001373	exon19	c.G2980A	p.G994S	.	.	213	9	107	0	G|0.973;A|0.027	23
DNAH14	127602	bcgsc.ca;mdanderson.org	37	1	225534324	225534324	+	Missense_Mutation	SNP	T	T	C	rs73136911		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH14	NM_001373	exon69	c.T10985C	p.I3662T	.	.	348	32	134	0	T|0.947;C|0.053	23
DNAH14	127602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225525864	225525864	+	Missense_Mutation	SNP	C	C	G	rs56918103	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH14	NM_001373	exon66	c.C10134G	p.F3378L	.	.	358	38	153	0	C|0.956;G|0.044	23
DNAH17	8632	bcgsc.ca	37	17	76447617	76447617	+	Silent	SNP	A	A	G	rs34002770	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH17	NM_173628	exon66	c.T10668C	p.D3556D	.	.	305	18	122	0	A|0.970;G|0.030	142
DNAH17	8632	bcgsc.ca	37	17	76547634	76547634	+	Missense_Mutation	SNP	T	T	C	rs16971526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH17	NM_173628	exon16	c.A2374G	p.I792V	.	.	258	8	73	0	T|0.904;C|0.096	142
DNAH17	8632	bcgsc.ca	37	17	76567783	76567783	+	Silent	SNP	C	C	A	rs61743539	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH17	NM_173628	exon4	c.G621T	p.V207V	.	.	191	8	59	0	C|0.994;A|0.006	142
DNAH17	8632	ucsc.edu;bcgsc.ca	37	17	76464916	76464916	+	Missense_Mutation	SNP	G	G	A	rs635874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH17	NM_173628	exon55	c.C8561T	p.S2854L	.	.	82	9	34	0	G|0.874;A|0.126	142
DNAH17	8632	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76472768	76472768	+	Silent	SNP	G	G	A	rs7405830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH17	NM_173628	exon52	c.C8040T	p.L2680L	.	.	348	37	117	0	G|0.641;A|0.359	142
DNAH3	55567	bcgsc.ca	37	16	20970611	20970611	+	Silent	SNP	G	G	A	rs143956219	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH3	NM_017539	exon54	c.C10716T	p.D3572D	.	.	200	6	66	0	G|0.994;A|0.006	167
DNAH3	55567	bcgsc.ca	37	16	21078693	21078693	+	Silent	SNP	T	T	G	rs861424	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH3	NM_017539	exon24	c.A3429C	p.A1143A	.	.	116	5	33	0	T|0.563;G|0.437	167
DNAH5	1767	bcgsc.ca	37	5	13714568	13714568	+	Silent	SNP	G	G	A	rs10077457	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH5	NM_001369	exon75	c.C13071T	p.A4357A	.	.	70	8	34	0	G|0.977;A|0.023	182
DNAH5	1767	bcgsc.ca	37	5	13811889	13811889	+	Missense_Mutation	SNP	C	C	T	rs35900306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH5	NM_001369	exon44	c.G7274A	p.R2425H	.	.	133	9	37	0	C|0.977;T|0.023	182
DNAH5	1767	hgsc.bcm.edu;bcgsc.ca	37	5	13770941	13770941	+	Silent	SNP	C	C	T	rs35233147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH5	NM_001369	exon56	c.G9522A	p.T3174T	.	.	214	10	85	0	C|0.978;T|0.022	182
DNAH7	56171	bcgsc.ca	37	2	196681546	196681546	+	Silent	SNP	G	G	A	rs139963761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH7	NM_018897	exon51	c.C9567T	p.A3189A	.	.	414	19	231	0	G|0.995;A|0.005	102
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196786851	196786851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH7	NM_018897	exon24	c.C3896A	p.P1299H	.	.	284	80	115	0	.	102
DNAH8	1769	bcgsc.ca	37	6	38750812	38750812	+	Silent	SNP	T	T	C	rs1678664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH8	NM_001206927	exon17	c.T2292C	p.G764G	.	.	101	6	63	0	T|0.885;C|0.115	615
DNAH8	1769	bcgsc.ca	37	6	38759379	38759379	+	Missense_Mutation	SNP	G	G	A	rs1678674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH8	NM_001206927	exon21	c.G2830A	p.A944T	.	.	326	13	130	0	G|0.911;A|0.089	615
DNAH8	1769	bcgsc.ca	37	6	38875752	38875752	+	Silent	SNP	A	A	G	rs4452640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH8	NM_001206927	exon64	c.A9369G	p.R3123R	.	.	95	5	36	0	A|0.910;G|0.090	615
DNAH9	1770	bcgsc.ca	37	17	11572727	11572727	+	Missense_Mutation	SNP	G	G	A	rs61745415	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH9	NM_001372	exon17	c.G2969A	p.R990H	.	.	171	10	63	0	G|0.973;A|0.027	168
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11556248	11556248	+	Missense_Mutation	SNP	C	C	T	rs16945138	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAH9	NM_001372	exon14	c.C2524T	p.R842W	.	.	110	12	54	0	C|0.941;T|0.059	168
DNAI1	27019	bcgsc.ca	37	9	34485237	34485237	+	Missense_Mutation	SNP	C	C	T	rs16931549	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAI1	NM_012144	exon3	c.C179T	p.A60V	.	.	345	13	96	0	C|0.974;T|0.026	90
DNAJA4	55466	bcgsc.ca	37	15	78565478	78565478	+	Silent	SNP	C	C	T	rs7163689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJA4	NM_018602	exon4	c.C442T	p.L148L	.	.	772	27	252	2	C|0.544;T|0.456	226
DNAJB11	51726	bcgsc.ca	37	3	186301703	186301703	+	Missense_Mutation	SNP	A	A	G	rs8147	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJB11	NM_016306	exon8	c.A790G	p.I264V	.	.	123	7	68	0	A|0.723;G|0.277	227
DNAJC13	23317	bcgsc.ca	37	3	132221142	132221142	+	Missense_Mutation	SNP	C	C	T	rs79734612	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJC13	NM_015268	exon40	c.C4546T	p.R1516C	.	.	332	11	113	0	C|0.994;T|0.006	272
DNAJC17	55192	bcgsc.ca	37	15	41068409	41068409	+	Missense_Mutation	SNP	C	C	T	rs73398528	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJC17	NM_018163	exon6	c.G463A	p.D155N	.	.	168	16	29	0	C|0.947;T|0.053	226
DNAJC2	27000	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102962387	102962387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJC2	NM_001129887	exon10	c.T1075C	p.S359P	.	.	691	229	284	3	.	158
DNAJC24	120526	bcgsc.ca	37	11	31392362	31392362	+	Missense_Mutation	SNP	A	A	G	rs111299050		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	DNAJC24,NS,carcinoma,0	DNAJC24	NM_181706	exon2	c.A67G	p.N23D	.	.	219	6	143	0	A|0.999;G|0.001	153
DNAJC25	548645	bcgsc.ca	37	9	114411891	114411891	+	Silent	SNP	C	C	T	rs1322259	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJC25	NM_001015882	exon3	c.C648T	p.D216D	.	.	239	17	160	0	C|0.958;T|0.042	22
DNAJC6	9829	bcgsc.ca	37	1	65858151	65858151	+	Silent	SNP	C	C	T	rs11208644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJC6	NM_001256864	exon12	c.C1506T	p.H502H	.	.	149	8	78	0	C|0.810;T|0.190	272
DNAJC6	9829	bcgsc.ca	37	1	65867519	65867519	+	Missense_Mutation	SNP	G	G	A	rs4915691	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNAJC6	NM_001256864	exon15	c.G2183A	p.S728N	.	.	83	6	46	0	G|0.742;A|0.258	272
DNAJC9-AS1	414245	broad.mit.edu	37	10	75008561	75008561	+	RNA	SNP	T	T	C	rs1064020	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	98	11	55	0	T|0.666;C|0.334	.
DNASE2B	58511	bcgsc.ca	37	1	84880380	84880380	+	Silent	SNP	T	T	C	rs3768250	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNASE2B	NM_021233	exon6	c.T915C	p.H305H	.	.	204	12	124	0	T|0.679;C|0.321	90
DNHD1	144132	bcgsc.ca	37	11	6519642	6519642	+	Missense_Mutation	SNP	G	G	A	rs11604149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNHD1	NM_173589	exon2	c.G197A	p.R66Q	.	.	118	7	38	0	G|0.551;A|0.449	24
DNHD1	144132	bcgsc.ca	37	11	6588553	6588553	+	Silent	SNP	C	C	T	rs56313830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNHD1	NM_144666	exon36	c.C11814T	p.G3938G	.	.	80	7	39	0	C|0.870;T|0.130	24
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6585838	6585838	+	Silent	SNP	G	G	A	rs11825255	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNHD1	NM_144666	exon32	c.G10560A	p.Q3520Q	.	.	61	10	39	0	G|0.816;A|0.184	24
DNM1L	10059	bcgsc.ca	37	12	32860302	32860302	+	Silent	SNP	G	G	A	rs2272238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNM1L	NM_012062	exon3	c.G252A	p.G84G	.	.	366	9	167	0	G|0.839;A|0.161	92
DNM1L	10059	bcgsc.ca	37	12	32875406	32875406	+	Silent	SNP	A	A	G	rs10844318	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNM1L	NM_012062	exon9	c.A918G	p.T306T	.	.	175	7	68	0	A|0.859;G|0.141	92
DNMBP	23268	bcgsc.ca	37	10	101639877	101639877	+	Missense_Mutation	SNP	A	A	C	rs11190305	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNMBP	NM_015221	exon16	c.T4239G	p.C1413W	.	.	441	19	133	0	A|0.708;C|0.292	233
DNMBP	23268	bcgsc.ca	37	10	101645498	101645498	+	Silent	SNP	T	T	C	rs2490763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNMBP	NM_015221	exon14	c.A3744G	p.P1248P	.	.	232	18	78	0	T|0.492;C|0.508	233
DNMBP	23268	bcgsc.ca	37	10	101657880	101657880	+	Silent	SNP	G	G	A	rs7919323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNMBP	NM_015221	exon9	c.C2883T	p.N961N	.	.	275	8	111	0	G|0.689;A|0.311	233
DNMBP	23268	bcgsc.ca;mdanderson.org	37	10	101639796	101639796	+	Silent	SNP	G	G	A	rs2255901	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNMBP	NM_015221	exon16	c.C4320T	p.S1440S	.	.	417	42	148	0	G|0.501;A|0.499	233
DNMT1	1786	bcgsc.ca	37	19	10267077	10267077	+	Silent	SNP	T	T	C	rs2228611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DNMT1	NM_001130823	exon18	c.A1389G	p.P463P	.	.	127	8	53	0	T|0.475;C|0.525	660
DNTTIP2	30836	bcgsc.ca	37	1	94342202	94342202	+	Missense_Mutation	SNP	G	G	A	rs35650636	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014597	exon2	c.C1289T	p.A430V	.	.	398	18	249	0	G|0.956;A|0.044	.
DOCK10	55619	bcgsc.ca	37	2	225639683	225639683	+	Silent	SNP	C	C	T	rs142779281		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon52	c.G5952A	p.T1984T	.	.	272	10	124	0	C|0.996;T|0.004	92
DOCK10	55619	bcgsc.ca	37	2	225669996	225669996	+	Silent	SNP	A	A	G	rs4674940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon36	c.T3978C	p.F1326F	.	.	273	13	136	0	A|0.923;G|0.077	92
DOCK10	55619	bcgsc.ca	37	2	225670901	225670901	+	Missense_Mutation	SNP	G	G	C	rs4674941	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon34	c.C3756G	p.I1252M	.	.	220	15	63	0	G|0.790;C|0.210	92
DOCK10	55619	bcgsc.ca	37	2	225684166	225684166	+	Silent	SNP	A	A	G	rs7572725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon29	c.T3264C	p.L1088L	.	.	185	10	72	0	A|0.757;G|0.243	92
DOCK10	55619	bcgsc.ca	37	2	225709926	225709926	+	Silent	SNP	A	A	G	rs7577271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon21	c.T2475C	p.S825S	.	.	143	12	100	0	A|0.820;G|0.180	92
DOCK10	55619	bcgsc.ca	37	2	225727431	225727431	+	Silent	SNP	T	T	C	rs7589474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon14	c.A1635G	p.Q545Q	.	.	283	17	88	0	T|0.830;C|0.170	92
DOCK10	55619	bcgsc.ca	37	2	225750861	225750861	+	Silent	SNP	C	C	T	rs2304336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK10	NM_014689	exon6	c.G531A	p.A177A	.	.	95	5	32	0	C|0.784;T|0.216	92
DOCK11	139818	bcgsc.ca	37	X	117722176	117722176	+	Silent	SNP	G	G	A	rs41312765	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK11	NM_144658	exon17	c.G1872A	p.E624E	.	.	195	15	103	0	G|0.917;A|0.083	93
DOCK1	1793	bcgsc.ca	37	10	129160458	129160458	+	Silent	SNP	G	G	A	rs2296635	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK1	NM_001380	exon33	c.G3351A	p.S1117S	.	.	127	7	31	0	G|0.808;A|0.192	698
DOCK2	1794	bcgsc.ca	37	5	169267784	169267784	+	Silent	SNP	G	G	A	rs261623	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK2	NM_004946	exon27	c.G2727A	p.Q909Q	.	.	138	6	50	0	G|0.557;A|0.443	97
DOCK2	1794	bcgsc.ca	37	5	169454941	169454941	+	Silent	SNP	C	C	G	rs9791113	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK2	NM_004946	exon34	c.C3456G	p.L1152L	.	.	137	7	80	0	C|0.563;G|0.437	97
DOCK2	1794	bcgsc.ca	37	5	169469088	169469088	+	Silent	SNP	G	G	C	rs6555882	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK2	NM_004946	exon38	c.G3828C	p.L1276L	.	.	231	11	78	0	G|0.867;C|0.133	97
DOCK5	80005	bcgsc.ca	37	8	25156602	25156602	+	Missense_Mutation	SNP	A	A	G	rs17053341	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK5	NM_024940	exon8	c.A749G	p.Q250R	.	.	132	7	54	1	A|0.956;G|0.044	71
DOCK5	80005	hgsc.bcm.edu;bcgsc.ca	37	8	25257468	25257468	+	Silent	SNP	C	C	T	rs141714689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK5	NM_024940	exon46	c.C4746T	p.D1582D	.	.	108	9	54	0	C|0.993;T|0.007	71
DOCK6	57572	bcgsc.ca	37	19	11332570	11332570	+	Silent	SNP	T	T	A	rs3810307	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK6	NM_020812	exon28	c.A3507T	p.L1169L	.	.	108	6	45	0	T|0.723;A|0.277	93
DOCK6	57572	bcgsc.ca	37	19	11332820	11332820	+	Silent	SNP	C	C	T	rs28481684	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK6	NM_020812	exon27	c.G3345A	p.T1115T	.	.	170	9	65	0	C|0.937;T|0.063	93
DOCK8	81704	ucsc.edu;bcgsc.ca	37	9	368030	368030	+	Silent	SNP	T	T	C	rs10972587	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK8	NM_203447	exon15	c.T1692C	p.Y564Y	.	.	131	15	76	0	T|0.862;C|0.138	517
DOCK8	81704	ucsc.edu;bcgsc.ca	37	9	449874	449874	+	Missense_Mutation	SNP	G	G	C	rs34908836	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK8	NM_203447	exon45	c.G5908C	p.A1970P	.	.	69	7	45	0	G|0.696;C|0.304	517
DOCK9	23348	bcgsc.ca	37	13	99457431	99457431	+	Silent	SNP	T	T	G	rs2296984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOCK9	.	.	.	.	.	.	180	11	59	0	T|0.771;G|0.229	90
DOPEY2	9980	bcgsc.ca	37	21	37603125	37603125	+	Silent	SNP	T	T	C	rs75907001	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DOPEY2	NM_005128	exon14	c.T2043C	p.S681S	.	.	84	5	40	0	T|0.963;C|0.037	91
DPAGT1	1798	bcgsc.ca	37	11	118967758	118967758	+	Missense_Mutation	SNP	T	T	C	rs643788	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPAGT1	NM_001382	exon9	c.A1177G	p.I393V	.	.	135	11	86	0	A|0.003;C|0.413	221
DPAGT1	1798	bcgsc.ca	37	11	118971545	118971545	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPAGT1	NM_001382	exon3	c.C291G	p.A97A	.	.	96	5	47	0	.	221
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30916843	30916843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPCR1	NM_080870	exon2	c.C602A	p.T201N	.	.	188	65	97	0	.	90
DPEP3	64180	hgsc.bcm.edu;bcgsc.ca	37	16	68013593	68013593	+	Silent	SNP	G	G	A	rs56921747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPEP3	NM_001129758	exon2	c.C438T	p.S146S	.	.	134	10	44	0	G|0.992;A|0.008	71
DPP3	10072	bcgsc.ca	37	11	66260557	66260557	+	Silent	SNP	G	G	A	rs147519149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPP3	NM_130443	exon11	c.G1203A	p.T401T	.	.	109	8	58	0	G|0.997;A|0.003	46
DPP6	1804	bcgsc.ca	37	7	154672646	154672646	+	Silent	SNP	T	T	C	rs3817522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPP6	NM_130797	exon21	c.T2127C	p.F709F	.	.	122	7	28	0	T|0.742;C|0.258	652
DPP6	1804	bcgsc.ca	37	7	154681216	154681216	+	Silent	SNP	G	G	A	rs1129301	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPP6	NM_130797	exon25	c.G2427A	p.R809R	.	.	140	6	49	0	A|0.261;C|0.000;G|0.739;N|0.000	652
DPP6	1804	bcgsc.ca	37	7	154684153	154684153	+	Missense_Mutation	SNP	T	T	C	rs3734960	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPP6	NM_130797	exon26	c.T2561C	p.L854P	.	.	179	15	52	0	T|0.670;C|0.330	652
DPPA2P3	100128023	bcgsc.ca	37	3	193711182	193711182	+	RNA	SNP	G	G	A	rs6777021	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	116	11	41	0	G|0.564;A|0.436	.
DPPA3	359787	bcgsc.ca	37	12	7869593	7869593	+	Missense_Mutation	SNP	A	A	G	rs148824844	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPPA3	NM_199286	exon4	c.A400G	p.S134G	.	.	1113	44	401	3	A|0.995;G|0.005	226
DPPA4	55211	bcgsc.ca	37	3	109047928	109047928	+	Silent	SNP	C	C	T	rs1163439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPPA4	NM_018189	exon6	c.G687A	p.R229R	.	.	176	8	47	0	C|0.885;T|0.115	227
DPY19L4	286148	bcgsc.ca	37	8	95768354	95768354	+	Silent	SNP	C	C	G	rs73697017	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPY19L4	NM_181787	exon7	c.C702G	p.G234G	.	.	479	13	121	0	C|0.971;G|0.029	92
DPYD	1806	hgsc.bcm.edu;bcgsc.ca	37	1	98039437	98039437	+	Missense_Mutation	SNP	C	C	T	rs61622928	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DPYD	NM_000110	exon11	c.G1218A	p.M406I	.	.	359	18	170	0	C|0.978;T|0.022	278
DSC1	1823	bcgsc.ca	37	18	28710615	28710615	+	Silent	SNP	C	C	A	rs1816634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC1	NM_024421	exon16	c.G2547T	p.S849S	.	.	338	13	102	0	C|0.914;A|0.086	94
DSC1	1823	bcgsc.ca	37	18	28710619	28710619	+	Missense_Mutation	SNP	C	C	A	rs985861	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC1	NM_024421	exon16	c.G2543T	p.C848F	.	.	347	15	104	0	C|0.914;A|0.086	94
DSC1	1823	bcgsc.ca	37	18	28711665	28711665	+	Silent	SNP	T	T	C	rs16961335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC1	NM_004948	exon15	c.A2379G	p.K793K	.	.	296	11	109	0	T|0.944;C|0.056	94
DSC1	1823	bcgsc.ca	37	18	28722039	28722039	+	Silent	SNP	G	G	A	rs2577075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC1	NM_004948	exon9	c.C1183T	p.L395L	.	.	634	44	238	0	G|0.696;A|0.304	94
DSC1	1823	bcgsc.ca	37	18	28722103	28722103	+	Silent	SNP	T	T	C	rs2577074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC1	NM_004948	exon9	c.A1119G	p.L373L	.	.	527	38	187	0	T|0.690;C|0.310	94
DSC2	1824	bcgsc.ca	37	18	28648071	28648071	+	Silent	SNP	G	G	A	rs61731920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC2	NM_024422	exon16	c.C2616T	p.C872C	.	.	241	9	72	0	G|0.998;A|0.002	517
DSC2	1824	bcgsc.ca	37	18	28649042	28649042	+	Missense_Mutation	SNP	T	T	C	rs1893963	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC2	NM_024422	exon15	c.A2326G	p.I776V	.	.	139	13	71	0	T|0.805;C|0.195	517
DSC2	1824	bcgsc.ca	37	18	28671039	28671039	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC2	NM_024422	exon4	c.T426C	p.C142C	.	.	294	8	98	0	.	517
DSC3	1825	bcgsc.ca	37	18	28588260	28588260	+	Missense_Mutation	SNP	C	C	T	rs146113185	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSC3	NM_024423	exon10	c.G1495A	p.E499K	.	.	355	13	135	0	C|0.996;T|0.004	94
DSCAML1	57453	bcgsc.ca	37	11	117308795	117308795	+	Silent	SNP	G	G	A	rs2253440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSCAML1	NM_020693	exon25	c.C4428T	p.F1476F	.	.	89	7	32	0	G|0.808;A|0.192	159
DSCAML1	57453	bcgsc.ca	37	11	117403235	117403235	+	Missense_Mutation	SNP	G	G	T	rs3741280	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSCAML1	NM_020693	exon4	c.C694A	p.H232N	.	.	112	7	38	0	G|0.640;T|0.360	159
DSCR3	10311	bcgsc.ca	37	21	38610840	38610840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSCR3	NM_006052	exon3	c.T272C	p.I91T	.	.	175	6	74	1	.	90
DSG1	1828	bcgsc.ca	37	18	28919779	28919779	+	Missense_Mutation	SNP	A	A	C	rs8091003	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG1	NM_001942	exon11	c.A1478C	p.N493T	.	.	192	9	110	0	A|0.796;C|0.204	519
DSG1	1828	bcgsc.ca	37	18	28919794	28919794	+	Missense_Mutation	SNP	C	C	A	rs8091117	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG1	NM_001942	exon11	c.C1493A	p.T498N	.	.	200	10	115	0	C|0.806;A|0.194	519
DSG1	1828	bcgsc.ca	37	18	28919884	28919884	+	Missense_Mutation	SNP	A	A	C	rs16961689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG1	NM_001942	exon11	c.A1583C	p.Y528S	.	.	213	11	107	0	A|0.885;C|0.115	519
DSG1	1828	bcgsc.ca	37	18	28919911	28919911	+	Missense_Mutation	SNP	A	A	G	rs61730306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG1	NM_001942	exon11	c.A1610G	p.K537R	.	.	254	12	111	0	A|0.893;G|0.107	519
DSG1	1828	bcgsc.ca	37	18	28919913	28919913	+	Missense_Mutation	SNP	G	G	A	rs34302455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG1	NM_001942	exon11	c.G1612A	p.D538N	.	.	261	13	109	0	G|0.894;A|0.106	519
DSG3	1830	bcgsc.ca	37	18	29038536	29038536	+	Silent	SNP	C	C	T	rs7240789	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG3	NM_001944	exon4	c.C345T	p.V115V	.	.	97	5	58	0	C|0.923;T|0.077	98
DSG4	147409	bcgsc.ca	37	18	28983565	28983565	+	Missense_Mutation	SNP	T	T	C	rs7229252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSG4	NM_001134453	exon11	c.T1604C	p.I535T	.	.	203	8	71	0	T|0.977;C|0.023	177
DSP	1832	bcgsc.ca	37	6	7584617	7584617	+	Silent	SNP	C	C	T	rs2076300	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSP	NM_004415	exon24	c.C7122T	p.T2374T	.	.	131	6	72	0	C|0.732;T|0.268	518
DSPP	1834	bcgsc.ca	37	4	88534235	88534235	+	Silent	SNP	A	A	G	rs2736982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSPP	NM_014208	exon4	c.A897G	p.S299S	.	.	214	14	139	1	A|0.346;G|0.654	90
DSPP	1834	bcgsc.ca	37	4	88536362	88536362	+	Missense_Mutation	SNP	G	G	A	rs116385272	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSPP	NM_014208	exon5	c.G2548A	p.G850S	.	.	414	40	227	0	G|0.462;A|0.538	90
DSPP	1834	bcgsc.ca	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	384	15	192	0	.	90
DSPP	1834	bcgsc.ca	37	4	88536692	88536692	+	Missense_Mutation	SNP	A	A	G	rs145771385		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSPP	NM_014208	exon5	c.A2878G	p.S960G	.	.	390	33	195	0	A|0.526;G|0.474	90
DSPP	1834	bcgsc.ca	37	4	88537420	88537420	+	Silent	SNP	C	C	T	rs112989710	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSPP	NM_014208	exon5	c.C3606T	p.S1202S	.	.	325	23	194	2	C|0.347;T|0.653	90
DST	667	bcgsc.ca	37	6	56417729	56417729	+	Silent	SNP	C	C	T	rs58928900		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_015548	exon42	c.G7992A	p.R2664R	.	.	228	8	75	0	C|0.982;T|0.018	523
DST	667	bcgsc.ca	37	6	56418006	56418006	+	Missense_Mutation	SNP	C	C	T	rs57472891		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_015548	exon42	c.G7715A	p.C2572Y	.	.	208	8	101	0	C|0.982;T|0.018	523
DST	667	bcgsc.ca	37	6	56420158	56420158	+	Missense_Mutation	SNP	C	C	T	rs62621210	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_015548	exon41	c.G7252A	p.V2418I	.	.	361	13	135	0	C|0.959;T|0.041	523
DST	667	bcgsc.ca	37	6	56420538	56420538	+	Missense_Mutation	SNP	C	C	T	rs11756977	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_015548	exon41	c.G6872A	p.R2291H	.	.	228	18	130	0	C|0.677;N|0.002	523
DST	667	bcgsc.ca	37	6	56484758	56484758	+	Silent	SNP	C	C	T	rs2230862	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_001723	exon23	c.G4074A	p.K1358K	.	.	511	24	221	1	C|0.609;T|0.391	523
DST	667	bcgsc.ca	37	6	56485486	56485486	+	Missense_Mutation	SNP	G	G	A	rs6909714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_001723	exon23	c.C3346T	p.H1116Y	.	.	216	10	105	0	G|0.972;A|0.028	523
DST	667	bcgsc.ca	37	6	56496089	56496089	+	Silent	SNP	G	G	A	rs78600049	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_001723	exon16	c.C2451T	p.V817V	.	.	319	10	102	0	G|0.984;A|0.016	523
DST	667	bcgsc.ca	37	6	56499262	56499262	+	Silent	SNP	G	G	A	rs79026338	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DST	NM_001723	exon12	c.C1881T	p.N627N	.	.	100	5	49	0	G|0.987;A|0.013	523
DSTYK	25778	bcgsc.ca	37	1	205129319	205129319	+	Silent	SNP	G	G	A	rs1062715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DSTYK	NM_199462	exon8	c.C2028T	p.F676F	.	.	339	33	90	0	G|0.704;A|0.296	333
DTNBP1	84062	bcgsc.ca	37	6	15524698	15524698	+	Silent	SNP	T	T	C	rs16876573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DTNBP1	NM_183040	exon9	c.A870G	p.P290P	.	.	268	10	52	0	T|0.966;C|0.034	90
DTNBP1	84062	hgsc.bcm.edu;bcgsc.ca	37	6	15523376	15523376	+	Missense_Mutation	SNP	G	G	A	rs74907982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DTNBP1	NM_032122	exon10	c.C886T	p.P296S	.	.	197	8	80	0	G|0.988;A|0.012	90
DTX2	113878	hgsc.bcm.edu;bcgsc.ca	37	7	76112290	76112290	+	Missense_Mutation	SNP	C	C	T	rs149983793	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DTX2	NM_001102596	exon2	c.C734T	p.A245V	.	.	328	16	132	0	C|0.998;T|0.002	524
DTX3L	151636	bcgsc.ca	37	3	122289369	122289369	+	Missense_Mutation	SNP	A	A	T	rs9868175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DTX3L	NM_138287	exon4	c.A2003T	p.K668M	.	.	215	10	105	0	A|0.964;T|0.036	587
DUOX2	50506	bcgsc.ca	37	15	45392014	45392014	+	Silent	SNP	C	C	T	rs79480907	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUOX2	NM_014080	exon25	c.G3261A	p.A1087A	.	.	205	8	64	0	C|0.984;T|0.016	95
DUSP12	11266	bcgsc.ca	37	1	161721707	161721707	+	Silent	SNP	C	C	T	rs1063178	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUSP12	NM_007240	exon3	c.C510T	p.Y170Y	.	.	601	41	230	1	C|0.639;N|0.000	226
DUSP22	56940	bcgsc.ca	37	6	348810	348810	+	Missense_Mutation	SNP	G	G	T	rs148581187	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUSP22	NM_020185	exon7	c.G477T	p.L159F	.	.	245	9	128	0	G|0.997;T|0.003	252
DUSP22	56940	bcgsc.ca	37	6	350829	350829	+	Silent	SNP	G	G	A	rs1129085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUSP22	NM_020185	exon8	c.G516A	p.P172P	.	.	480	21	158	0	G|0.581;A|0.419	252
DUSP27	92235	bcgsc.ca	37	1	167095765	167095765	+	Missense_Mutation	SNP	G	G	A	rs6668826	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUSP27	NM_001080426	exon5	c.G1397A	p.R466H	.	.	76	4	44	0	G|0.731;A|0.269	71
DUSP4	1846	ucsc.edu	37	8	29197672	29197672	+	Silent	SNP	A	A	G	rs583034	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUSP4	NM_001394	exon2	c.T522C	p.S174S	.	.	32	4	15	0	A|0.447;G|0.553	1083
DUXA	503835	bcgsc.ca	37	19	57670645	57670645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DUXA	NM_001012729	exon3	c.T182C	p.I61T	.	.	76	4	31	0	.	91
DVL2	1856	ucsc.edu	37	17	7132556	7132556	+	Silent	SNP	C	C	T	rs222837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DVL2	NM_004422	exon8	c.G855A	p.Q285Q	.	.	135	17	26	0	C|0.365;T|0.635	659
DYM	54808	hgsc.bcm.edu;bcgsc.ca	37	18	46905042	46905042	+	Missense_Mutation	SNP	C	C	T	rs150635814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYM	NM_017653	exon5	c.G316A	p.A106T	.	.	193	8	82	0	C|0.999;T|0.001	226
DYNC1LI1	51143	bcgsc.ca	37	3	32578505	32578505	+	Missense_Mutation	SNP	T	T	C	rs2303857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYNC1LI1	NM_016141	exon6	c.A830G	p.Q277R	.	.	268	9	105	0	T|0.935;C|0.065	91
DYNC2H1	79659	bcgsc.ca	37	11	103158278	103158278	+	Missense_Mutation	SNP	C	C	T	rs10895391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYNC2H1	NM_001080463	exon76	c.C11060T	p.A3687V	.	.	382	20	155	0	C|0.709;T|0.291	68
DYNLT3	6990	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37701048	37701048	+	Silent	SNP	G	G	A	rs11771	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYNLT3	NM_006520	exon3	c.C183T	p.A61A	.	.	126	17	34	0	0|0.004;T|0.075	130
DYSF	8291	bcgsc.ca	37	2	71838443	71838443	+	Silent	SNP	C	C	T	rs11558179	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYSF	NM_001130982	exon38	c.C4068T	p.N1356N	.	.	157	11	60	0	C|0.808;T|0.192	158
DYTN	391475	bcgsc.ca	37	2	207527815	207527815	+	Missense_Mutation	SNP	C	C	G	rs79969810		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYTN	NM_001093730	exon11	c.G1445C	p.S482T	.	.	753	27	233	0	C|0.989;G|0.011	23
DYTN	391475	bcgsc.ca	37	2	207527840	207527840	+	Missense_Mutation	SNP	G	G	T	rs2115591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DYTN	NM_001093730	exon11	c.C1420A	p.Q474K	.	.	865	34	240	0	G|0.615;N|0.000	23
DZANK1	55184	bcgsc.ca	37	20	18377169	18377169	+	Missense_Mutation	SNP	C	C	T	rs13347177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001099407	exon15	c.G1558A	p.E520K	.	.	342	8	126	0	C|0.992;T|0.008	.
DZIP3	9666	bcgsc.ca	37	3	108324261	108324261	+	Missense_Mutation	SNP	C	C	G	rs61734868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DZIP3	NM_014648	exon2	c.C8G	p.S3C	.	.	198	7	111	0	C|0.988;G|0.012	91
DZIP3	9666	bcgsc.ca	37	3	108330071	108330071	+	Silent	SNP	A	A	G	rs77617763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DZIP3	NM_014648	exon4	c.A153G	p.L51L	.	.	334	16	170	0	A|0.983;G|0.017	91
DZIP3	9666	bcgsc.ca	37	3	108380982	108380982	+	Missense_Mutation	SNP	C	C	A	rs80072641	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	DZIP3	NM_014648	exon21	c.C2301A	p.F767L	.	.	245	11	138	0	C|0.986;A|0.014	91
EBF1	1879	bcgsc.ca	37	5	158204425	158204425	+	Silent	SNP	A	A	G	rs1368298	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EBF1	NM_024007	exon10	c.T1032C	p.Y344Y	.	.	318	15	110	0	A|0.408;G|0.592	92
EBF2	64641	bcgsc.ca	37	8	25708131	25708131	+	Missense_Mutation	SNP	C	C	T	rs17054477	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EBF2	NM_022659	exon15	c.G1675A	p.G559S	.	.	134	5	92	0	C|0.962;T|0.038	26
EBF2	64641	bcgsc.ca	37	8	25718722	25718722	+	Silent	SNP	G	G	C	rs17054490	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EBF2	NM_022659	exon13	c.C1185G	p.A395A	.	.	107	8	63	0	G|0.961;C|0.039	26
EBF4	57593	bcgsc.ca	37	20	2688604	2688604	+	Silent	SNP	T	T	C	rs114850083	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001110514	exon6	c.T414C	p.Y138Y	.	.	207	9	45	0	T|0.990;C|0.010	.
ECD	11319	bcgsc.ca	37	10	74896664	74896664	+	Missense_Mutation	SNP	T	T	C	rs36152134	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECD	NM_001135752	exon14	c.A1601G	p.N534S	.	.	135	8	59	0	T|0.887;C|0.113	91
ECD	11319	bcgsc.ca	37	10	74897816	74897816	+	Silent	SNP	C	C	T	rs2271905	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECD	NM_001135752	exon13	c.G1533A	p.E511E	.	.	185	7	92	0	C|0.809;T|0.191	91
ECD	11319	bcgsc.ca	37	10	74899134	74899134	+	Missense_Mutation	SNP	C	C	G	rs3736518	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECD	NM_001135752	exon12	c.G1453C	p.E485Q	.	.	271	9	99	0	C|0.824;G|0.176	91
ECD	11319	bcgsc.ca	37	10	74923562	74923562	+	Missense_Mutation	SNP	C	C	T	rs3812619	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECD	NM_001135752	exon2	c.G134A	p.R45Q	.	.	422	16	128	0	C|0.811;T|0.189	91
ECE1	1889	bcgsc.ca	37	1	21573722	21573722	+	Silent	SNP	G	G	A	rs2229450	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECE1	NM_001397	exon9	c.C1155T	p.T385T	.	.	167	10	45	0	G|0.816;N|0.000;A|0.183	93
ECE2	9718	bcgsc.ca	37	3	183976241	183976241	+	Missense_Mutation	SNP	A	A	G	rs6767237	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECE2	NM_032331	exon3	c.A646G	p.K216E	.	.	140	18	39	1	A|0.856;G|0.144	94
ECM2	1842	bcgsc.ca	37	9	95274338	95274338	+	Silent	SNP	A	A	G	rs2296667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECM2	NM_001393	exon5	c.T1125C	p.S375S	.	.	275	18	109	0	A|0.543;G|0.457	131
ECM2	1842	bcgsc.ca	37	9	95279985	95279985	+	Silent	SNP	C	C	A	rs968040	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECM2	NM_001393	exon3	c.G465T	p.P155P	.	.	120	11	31	0	C|0.602;A|0.398	131
ECM2	1842	bcgsc.ca	37	9	95284873	95284873	+	Silent	SNP	A	A	G	rs9299405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECM2	NM_001393	exon2	c.T276C	p.S92S	.	.	171	11	78	0	A|0.691;G|0.309	131
ECT2L	345930	hgsc.bcm.edu;bcgsc.ca	37	6	139170526	139170526	+	Missense_Mutation	SNP	G	G	A	rs76241582	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ECT2L	NM_001195037	exon8	c.G1024A	p.G342R	.	.	187	10	78	0	G|0.989;A|0.011	22
EDEM3	80267	bcgsc.ca	37	1	184677464	184677464	+	Silent	SNP	G	G	A	rs3736757	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EDEM3	NM_025191	exon17	c.C1860T	p.I620I	.	.	369	27	102	0	G|0.400;A|0.600	91
EDIL3	10085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	83356219	83356219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EDIL3	NM_005711	exon9	c.T1037C	p.M346T	.	.	344	114	130	0	.	131
EDNRA	1909	bcgsc.ca	37	4	148461037	148461037	+	Silent	SNP	T	T	C	rs5333	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EDNRA	NM_001957	exon6	c.T969C	p.H323H	.	.	553	22	190	0	T|0.642;C|0.358	586
EDNRA	1909	bcgsc.ca	37	4	148461073	148461073	+	Silent	SNP	G	G	A	rs5334	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EDNRA	NM_001957	exon6	c.G1005A	p.E335E	.	.	376	16	144	0	G|0.644;A|0.356	586
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	74229680	74229680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EEF1A1	NM_001402	exon2	c.A70G	p.T24A	.	.	69	26	17	0	.	226
EEFSEC	60678	hgsc.bcm.edu;bcgsc.ca	37	3	128127053	128127053	+	Missense_Mutation	SNP	T	T	G	rs114096655	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EEFSEC	NM_021937	exon7	c.T1742G	p.F581C	.	.	258	13	85	0	T|0.992;G|0.008	91
EFCAB4B	84766	bcgsc.ca	37	12	3806147	3806147	+	Missense_Mutation	SNP	T	T	C	rs9788233	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB4B	NM_001144958	exon4	c.A19G	p.R7G	.	.	56	5	27	0	T|0.870;C|0.130	92
EFCAB5	374786	bcgsc.ca	37	17	28268817	28268817	+	Missense_Mutation	SNP	G	G	A	rs79556405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB5	NM_198529	exon1	c.G3A	p.M1I	.	.	308	10	99	0	G|0.945;A|0.055	70
EFCAB5	374786	bcgsc.ca	37	17	28380566	28380566	+	Missense_Mutation	SNP	C	C	A	rs147501825		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB5	NM_198529	exon10	c.C1594A	p.P532T	.	.	180	9	93	0	C|0.998;A|0.002	70
EFCAB5	374786	bcgsc.ca	37	17	28380655	28380655	+	Missense_Mutation	SNP	G	G	T	rs9900546	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB5	NM_198529	exon10	c.G1683T	p.R561S	.	.	160	13	82	0	G|0.889;T|0.111	70
EFCAB5	374786	bcgsc.ca	37	17	28381141	28381141	+	Silent	SNP	C	C	G	rs4074170	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB5	NM_198529	exon10	c.C2169G	p.T723T	.	.	292	20	162	0	C|0.514;G|0.486	70
EFCAB5	374786	bcgsc.ca	37	17	28407876	28407876	+	Silent	SNP	T	T	G	rs7221743	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB5	NM_198529	exon17	c.T3303G	p.G1101G	.	.	179	17	56	0	T|0.418;G|0.582	70
EFCAB5	374786	bcgsc.ca	37	17	28417510	28417510	+	Missense_Mutation	SNP	T	T	C	rs4499292	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB5	NM_198529	exon20	c.T3755C	p.V1252A	.	.	210	8	90	0	T|0.996;C|0.004	70
EFCAB6	64800	bcgsc.ca	37	22	44022394	44022394	+	Missense_Mutation	SNP	G	G	A	rs6006514	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB6	NM_022785	exon20	c.C2398T	p.R800W	.	.	164	8	58	0	G|0.964;A|0.036	97
EFCAB7	84455	bcgsc.ca	37	1	63999868	63999868	+	Missense_Mutation	SNP	T	T	C	rs6657480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB7	NM_032437	exon6	c.T785C	p.M262T	.	.	157	13	57	0	T|0.741;C|0.259	68
EFCAB7	84455	hgsc.bcm.edu;bcgsc.ca	37	1	63991322	63991322	+	Missense_Mutation	SNP	T	T	A	rs17125106	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFCAB7	NM_032437	exon2	c.T79A	p.F27I	.	.	296	28	132	0	T|0.974;A|0.026	68
EFEMP1	2202	bcgsc.ca	37	2	56145110	56145110	+	Silent	SNP	G	G	T	rs12292	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFEMP1	NM_001039349	exon4	c.C207A	p.L69L	.	.	358	13	139	0	G|0.951;T|0.049	520
EFHB	151651	bcgsc.ca	37	3	19975215	19975215	+	Missense_Mutation	SNP	C	C	A	rs17795400	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFHB	NM_144715	exon1	c.G296T	p.G99V	.	.	492	17	211	1	C|0.796;A|0.203	22
EFTUD1	79631	bcgsc.ca	37	15	82443939	82443939	+	Silent	SNP	G	G	A	rs4725	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EFTUD1	NM_024580	exon18	c.C2856T	p.D952D	.	.	410	13	123	0	G|0.651;A|0.349	91
EGF	1950	bcgsc.ca	37	4	110901198	110901198	+	Missense_Mutation	SNP	G	G	A	rs2237051	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EGF	NM_001963	exon14	c.G2124A	p.M708I	.	.	270	15	92	0	G|0.424;A|0.576	524
EGFL6	25975	bcgsc.ca	37	X	13651155	13651155	+	Missense_Mutation	SNP	G	G	A	rs16979033	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EGFL6	NM_001167890	exon12	c.G1606A	p.D536N	.	.	226	19	59	0	0|0.015;A|0.079	193
EGFR	1956	bcgsc.ca	37	7	55249063	55249063	+	Silent	SNP	G	G	A	rs1050171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	EGFR,NS,carcinoma,+1	EGFR	NM_005228	exon20	c.G2361A	p.Q787Q	.	.	125	6	41	0	G|0.497;A|0.503	44910
EGR3	1960	bcgsc.ca	37	8	22548098	22548098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EGR3	NM_004430	exon2	c.A1052G	p.H351R	.	.	104	6	53	0	.	90
EGR4	1961	ucsc.edu	37	2	73518867	73518867	+	Silent	SNP	G	G	A	rs7558708	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EGR4	NM_001965	exon2	c.C1488T	p.R496R	.	.	53	5	26	0	G|0.791;A|0.209	90
EHHADH	1962	bcgsc.ca	37	3	184910133	184910133	+	Missense_Mutation	SNP	G	G	T	rs11919970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EHHADH	NM_001966	exon7	c.C2053A	p.Q685K	.	.	205	12	71	0	G|0.822;T|0.178	93
EIF2AK4	440275	bcgsc.ca	37	15	40259848	40259848	+	Missense_Mutation	SNP	A	A	C	rs2291627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EIF2AK4	NM_001013703	exon9	c.A1321C	p.I441L	.	.	134	7	61	0	C|0.219;N|0.000	757
EIF2B3	8891	bcgsc.ca	37	1	45444038	45444038	+	Silent	SNP	G	G	A	rs11556200	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EIF2B3	NM_020365	exon3	c.C243T	p.D81D	.	.	176	7	74	0	G|0.714;A|0.286	92
EIF2S3	1968	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	24078262	24078262	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EIF2S3	NM_001415	exon5	c.C441T	p.N147N	.	.	290	23	76	0	.	130
EIF3IP1	442720	bcgsc.ca	37	7	109599385	109599385	+	RNA	SNP	A	A	G	rs11984226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	82	5	33	0	A|0.896;G|0.104	.
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	176072880	176072880	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001099408	exon9	c.G628T	p.E210X	.	.	184	64	72	0	.	.
ELF1	1997	bcgsc.ca	37	13	41517985	41517985	+	Silent	SNP	A	A	G	rs3764056	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ELF1	NM_172373	exon6	c.T606C	p.D202D	.	.	440	17	241	1	A|0.521;G|0.479	227
ELMOD1	55531	bcgsc.ca	37	11	107521088	107521088	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018712	exon8	c.A582G	p.A194A	.	.	85	4	39	0	.	.
ELMOD1	55531	bcgsc.ca	37	11	107535758	107535758	+	Silent	SNP	G	G	A	rs647756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018712	exon12	c.G840A	p.L280L	.	.	86	5	41	0	G|0.697;A|0.303	.
ELMSAN1	91748	bcgsc.ca	37	14	74188164	74188164	+	Missense_Mutation	SNP	T	T	C	rs60635070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_194278	exon11	c.A2773G	p.S925G	.	.	205	7	63	0	A|0.000;C|0.077;T|0.923	.
ELSPBP1	64100	bcgsc.ca	37	19	48517538	48517538	+	Missense_Mutation	SNP	G	G	A	rs62129078	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ELSPBP1	NM_022142	exon3	c.G181A	p.G61S	.	.	165	8	32	0	G|0.845;A|0.155	90
EMBP1	647121	bcgsc.ca	37	1	121298344	121298344	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	413	33	174	0	.	.
EMD	2010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153609368	153609368	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EMD	NM_000117	exon6	c.C576T	p.S192S	.	.	80	55	25	0	.	130
EMID1	129080	bcgsc.ca	37	22	29621128	29621128	+	Missense_Mutation	SNP	C	C	G	rs743920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EMID1	NM_133455	exon4	c.C326G	p.A109G	.	.	78	7	36	0	C|0.617;G|0.383	90
EML2	24139	bcgsc.ca	37	19	46133256	46133256	+	Missense_Mutation	SNP	G	G	A	rs7252175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EML2	NM_001193268	exon10	c.C1162T	p.L388F	.	.	113	6	51	0	G|0.857;A|0.143	154
EMR1	2015	bcgsc.ca	37	19	6897464	6897464	+	Missense_Mutation	SNP	C	C	G	rs330880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EMR1	NM_001256253	exon5	c.C420G	p.S140R	.	.	284	18	102	0	C|0.550;G|0.450	526
EMR1	2015	bcgsc.ca	37	19	6901891	6901891	+	Missense_Mutation	SNP	G	G	A	rs897738	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EMR1	NM_001256253	exon6	c.G520A	p.D174N	.	.	148	14	47	0	G|0.479;T|0.088	526
EMR1	2015	bcgsc.ca	37	19	6904137	6904137	+	Missense_Mutation	SNP	C	C	T	rs370094	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EMR1	NM_001256253	exon8	c.C893T	p.A298V	.	.	163	15	48	0	C|0.602;T|0.398	526
EMR1	2015	ucsc.edu;bcgsc.ca	37	19	6903920	6903920	+	Missense_Mutation	SNP	A	A	G	rs443658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EMR1	NM_001256253	exon7	c.A761G	p.N254S	.	.	130	15	43	0	T|0.120;G|0.311	526
ENAM	10117	bcgsc.ca	37	4	71509431	71509431	+	Missense_Mutation	SNP	G	G	A	rs3796704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENAM	NM_031889	exon9	c.G2288A	p.R763Q	.	.	208	12	136	0	G|0.873;A|0.127	93
ENOX1	55068	bcgsc.ca	37	13	43843630	43843630	+	Silent	SNP	C	C	T	rs116115092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENOX1	NM_017993	exon13	c.G1530A	p.A510A	.	.	804	34	319	0	C|0.986;T|0.014	92
ENOX2	10495	bcgsc.ca	37	X	129790619	129790619	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENOX2	NM_182314	exon11	c.A1152G	p.E384E	.	.	458	9	211	1	.	131
ENPP1	5167	bcgsc.ca	37	6	132172368	132172368	+	Missense_Mutation	SNP	A	A	C	rs1044498	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENPP1	NM_006208	exon4	c.A517C	p.K173Q	.	.	149	12	42	0	A|0.655;C|0.345	95
ENPP3	5169	bcgsc.ca	37	6	131995313	131995313	+	Silent	SNP	A	A	G	rs9493048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENPP3	NM_005021	exon8	c.A654G	p.P218P	.	.	280	10	100	0	A|0.740;G|0.260	95
ENPP4	22875	bcgsc.ca	37	6	46111018	46111018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENPP4	NM_014936	exon4	c.G1003T	p.D335Y	.	.	93	6	44	0	.	94
ENPP7	339221	ucsc.edu;bcgsc.ca	37	17	77709019	77709019	+	Missense_Mutation	SNP	C	C	G	rs80066859	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENPP7	NM_178543	exon3	c.C577G	p.L193V	.	.	45	4	27	0	C|0.990;G|0.010	92
ENTPD7	57089	hgsc.bcm.edu;bcgsc.ca	37	10	101421367	101421367	+	Missense_Mutation	SNP	G	G	A	rs61729539	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ENTPD7	NM_020354	exon3	c.G173A	p.R58Q	.	.	183	12	61	0	G|0.991;A|0.009	91
EP400	57634	bcgsc.ca	37	12	132508389	132508389	+	Silent	SNP	A	A	G	rs7133119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EP400	NM_015409	exon24	c.A4758G	p.P1586P	.	.	168	17	45	0	A|0.700;G|0.300	520
EPB41L2	2037	bcgsc.ca	37	6	131190838	131190838	+	Silent	SNP	G	G	A	rs17059736	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPB41L2	NM_001431	exon15	c.C2472T	p.P824P	.	.	328	19	105	0	G|0.841;A|0.159	91
EPB41L4A	64097	bcgsc.ca	37	5	111611076	111611076	+	Silent	SNP	A	A	G	rs12521830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPB41L4A	NM_022140	exon4	c.T282C	p.F94F	.	.	413	15	199	0	A|0.638;G|0.362	91
EPB41L4A	64097	hgsc.bcm.edu;bcgsc.ca	37	5	111594953	111594953	+	Silent	SNP	T	T	C	rs34755755		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPB41L4A	NM_022140	exon9	c.A768G	p.Q256Q	.	.	209	10	77	0	T|0.020;G|0.005	91
EPC1	80314	bcgsc.ca	37	10	32580219	32580219	+	Missense_Mutation	SNP	T	T	C	rs73245661	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPC1	NM_001272004	exon6	c.A847G	p.M283V	.	.	117	10	43	2	T|0.949;C|0.051	93
EPC1	80314	bcgsc.ca	37	10	32582661	32582661	+	Silent	SNP	A	A	G	rs60610378	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPC1	NM_001272004	exon3	c.T318C	p.F106F	.	.	226	7	53	0	A|0.981;G|0.019	93
EPG5	57724	bcgsc.ca	37	18	43496063	43496063	+	Missense_Mutation	SNP	T	T	C	rs61744077		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPG5	NM_020964	exon19	c.A3493G	p.I1165V	.	.	161	8	37	0	T|0.996;C|0.004	580
EPHB1	2047	bcgsc.ca	37	3	134670524	134670524	+	Silent	SNP	C	C	T	rs7644369	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPHB1	NM_004441	exon3	c.C435T	p.S145S	.	.	382	27	129	1	C|0.559;T|0.441	1492
EPHB3	2049	bcgsc.ca	37	3	184289152	184289152	+	Silent	SNP	A	A	G	rs13069661	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPHB3	NM_004443	exon2	c.A165G	p.T55T	.	.	420	20	120	0	A|0.802;G|0.198	1455
EPPK1	83481	bcgsc.ca	37	8	144940929	144940929	+	Missense_Mutation	SNP	G	G	C	rs112679832		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPPK1	NM_031308	exon1	c.C6493G	p.Q2165E	.	.	734	19	90	0	G|0.995;C|0.005	25
EPRS	2058	bcgsc.ca	37	1	220154768	220154768	+	Silent	SNP	C	C	T	rs1061160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPRS	NM_004446	exon24	c.G3405A	p.Q1135Q	.	.	178	7	51	0	C|0.645;T|0.355	92
EPRS	2058	bcgsc.ca	37	1	220162029	220162029	+	Missense_Mutation	SNP	G	G	T	rs5030751	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPRS	NM_004446	exon19	c.C2678A	p.P893H	.	.	170	15	66	0	G|0.959;T|0.041	92
EPS8	2059	bcgsc.ca	37	12	15776095	15776095	+	Silent	SNP	C	C	T	rs1126786	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPS8	NM_004447	exon20	c.G2352A	p.L784L	.	.	232	22	77	0	T|0.099;G|0.339;C|0.489;A|0.073	94
EPS8L2	64787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	709421	709421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPS8L2	NM_022772	exon2	c.G14T	p.G5V	.	.	93	26	34	0	.	91
EPSTI1	94240	bcgsc.ca	37	13	43462422	43462422	+	Missense_Mutation	SNP	A	A	T	rs1044856	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EPSTI1	NM_001002264	exon13	c.T1197A	p.N399K	.	.	244	11	119	0	A|0.664;T|0.336	91
ERBB2IP	55914	bcgsc.ca	37	5	65350412	65350412	+	Missense_Mutation	SNP	G	G	T	rs35601230	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERBB2IP	NM_001253699	exon21	c.G3266T	p.G1089V	.	.	124	6	64	0	G|0.978;T|0.022	653
ERBB2IP	55914	hgsc.bcm.edu;bcgsc.ca	37	5	65349887	65349887	+	Missense_Mutation	SNP	A	A	G	rs34521887	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERBB2IP	NM_001253699	exon21	c.A2741G	p.K914R	.	.	92	8	73	0	A|0.986;G|0.014	653
ERC1	23085	bcgsc.ca	37	12	1219375	1219375	+	Silent	SNP	T	T	A	rs36113377	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERC1	NM_178039	exon5	c.T1179A	p.S393S	.	.	199	7	109	0	T|0.673;A|0.327	660
ERCC6	2074	bcgsc.ca	37	10	50678261	50678261	+	Missense_Mutation	SNP	C	C	T	rs114234514	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERCC6	NM_000124	exon18	c.T3745A	p.S1249T	.	.	790	30	256	0	C|0.998;T|0.002	1153
ERGIC2	51290	bcgsc.ca	37	12	29519841	29519841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERGIC2	NM_016570	exon5	c.T302C	p.V101A	.	.	87	4	40	0	.	91
ERI1	90459	bcgsc.ca	37	8	8869199	8869199	+	Silent	SNP	T	T	G	rs9650616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERI1	NM_153332	exon3	c.T435G	p.P145P	.	.	110	5	79	0	T|0.605;G|0.395	68
ERI2	112479	bcgsc.ca	37	16	20802172	20802172	+	Missense_Mutation	SNP	C	C	T	rs2301770	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERI2	NM_080663	exon9	c.G815A	p.G272D	.	.	302	13	125	0	C|0.906;T|0.094	153
ERMAP	114625	bcgsc.ca	37	1	43296173	43296173	+	Silent	SNP	C	C	T	rs33950227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERMAP	NM_001017922	exon3	c.C54T	p.L18L	.	.	208	7	78	0	C|0.814;T|0.186	91
ERN1	2081	hgsc.bcm.edu;bcgsc.ca	37	17	62157052	62157052	+	Silent	SNP	C	C	T	rs113446786		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERN1	NM_001433	exon4	c.G252A	p.T84T	.	.	286	12	160	0	C|0.998;T|0.002	784
ERO1L	30001	bcgsc.ca	37	14	53112928	53112928	+	Silent	SNP	A	A	G	rs34558958	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERO1L	NM_014584	exon15	c.T1290C	p.S430S	.	.	306	10	138	0	A|0.981;G|0.019	90
ERO1LB	56605	bcgsc.ca	37	1	236381833	236381833	+	Silent	SNP	A	A	G	rs11811758	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERO1LB	NM_019891	exon16	c.T1387C	p.L463L	.	.	436	17	167	0	A|0.961;G|0.039	90
ERP29	10961	bcgsc.ca	37	12	112460147	112460147	+	Silent	SNP	T	T	G	rs10774648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ERP29	NM_006817	exon3	c.T477G	p.P159P	.	.	119	7	44	0	T|0.900;G|0.100	90
ESCO2	157570	bcgsc.ca	37	8	27634064	27634064	+	Missense_Mutation	SNP	C	C	T	rs4732748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ESCO2	NM_001017420	exon3	c.C239T	p.A80V	.	.	155	5	87	0	C|0.850;T|0.150	90
ESD	2098	bcgsc.ca	37	13	47354140	47354140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ESD	NM_001984	exon8	c.A530G	p.N177S	.	.	79	4	32	0	.	91
ESF1	51575	bcgsc.ca	37	20	13695680	13695680	+	Silent	SNP	C	C	T	rs6110019	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ESF1	NM_001276380	exon14	c.G2397A	p.R799R	.	.	474	36	209	1	C|0.707;T|0.294	91
ESYT2	57488	bcgsc.ca	37	7	158528233	158528233	+	Silent	SNP	A	A	G	rs3816462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ESYT2	NM_020728	exon20	c.T2547C	p.S849S	.	.	125	7	43	0	A|0.703;G|0.297	92
ESYT2	57488	bcgsc.ca	37	7	158528254	158528254	+	Silent	SNP	G	G	A	rs34974906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	ESYT2,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0	ESYT2	NM_020728	exon20	c.C2526T	p.L842L	.	.	115	6	41	0	G|0.884;A|0.116	92
ESYT2	57488	bcgsc.ca	37	7	158528269	158528269	+	Silent	SNP	C	C	G	rs35914882	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	ESYT2,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0	ESYT2	NM_020728	exon20	c.G2511C	p.V837V	.	.	123	7	42	0	C|0.876;G|0.124	92
ESYT2	57488	bcgsc.ca	37	7	158590740	158590740	+	Missense_Mutation	SNP	A	A	T	rs13233513	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ESYT2	NM_020728	exon3	c.T544A	p.C182S	.	.	157	8	52	0	A|0.887;T|0.113	92
ESYT3	83850	bcgsc.ca	37	3	138188336	138188336	+	Missense_Mutation	SNP	A	A	G	rs146916723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ESYT3	NM_031913	exon15	c.A1493G	p.H498R	.	.	88	7	34	0	A|0.996;G|0.004	90
ETAA1	54465	bcgsc.ca	37	2	67630476	67630476	+	Missense_Mutation	SNP	T	T	C	rs13036061	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETAA1	NM_019002	exon5	c.T662C	p.M221T	.	.	163	7	131	0	T|0.886;C|0.114	156
ETAA1	54465	bcgsc.ca	37	2	67631395	67631395	+	Silent	SNP	G	G	A	rs10496153	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETAA1	NM_019002	exon5	c.G1581A	p.R527R	.	.	251	12	122	0	G|0.914;A|0.086	156
ETAA1	54465	bcgsc.ca	37	2	67632348	67632348	+	Missense_Mutation	SNP	C	C	A	rs116214347	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETAA1	NM_019002	exon5	c.C2534A	p.S845Y	.	.	170	5	95	0	C|0.985;A|0.015	156
ETNK2	55224	bcgsc.ca	37	1	204101381	204101381	+	Silent	SNP	G	G	A	rs76205451		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETNK2	NM_018208	exon8	c.C1092T	p.Y364Y	.	.	119	8	48	0	G|0.981;A|0.019	493
ETS1	2113	ucsc.edu;bcgsc.ca	37	11	128333503	128333503	+	Silent	SNP	T	T	C	rs2230004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETS1	NM_001143820	exon9	c.A1143G	p.L381L	.	.	71	7	27	0	T|0.532;C|0.468	1270
ETV3L	440695	bcgsc.ca	37	1	157062696	157062696	+	Silent	SNP	G	G	T	rs1176537	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETV3L	NM_001004341	exon5	c.C831A	p.L277L	.	.	81	7	30	0	G|0.720;T|0.280	228
ETV3L	440695	bcgsc.ca	37	1	157069154	157069154	+	Silent	SNP	A	A	G	rs16838075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETV3L	NM_001004341	exon2	c.T75C	p.D25D	.	.	158	8	52	0	A|0.729;G|0.271	228
ETV7	51513	bcgsc.ca	37	6	36341294	36341294	+	Silent	SNP	C	C	T	rs3213530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ETV7	NM_001207035	exon4	c.G369A	p.G123G	.	.	117	7	32	0	C|0.813;T|0.187	415
EVC	2121	bcgsc.ca	37	4	5750031	5750031	+	Silent	SNP	C	C	T	rs6854138	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EVC	NM_153717	exon8	c.C1096T	p.L366L	.	.	108	9	33	0	C|0.967;T|0.033	92
EVC	2121	bcgsc.ca	37	4	5755524	5755524	+	Missense_Mutation	SNP	G	G	A	rs35953626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EVC	NM_153717	exon10	c.G1328A	p.R443Q	.	.	207	16	50	0	G|0.931;A|0.069	92
EVC2	132884	bcgsc.ca	37	4	5586384	5586384	+	Missense_Mutation	SNP	G	G	A	rs60809236	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EVC2	NM_147127	exon17	c.C3023T	p.S1008L	.	.	107	6	47	0	G|0.963;A|0.037	155
EVC2	132884	bcgsc.ca	37	4	5624670	5624670	+	Missense_Mutation	SNP	T	T	C	rs730469	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EVC2	NM_147127	exon14	c.A2095G	p.T699A	.	.	170	10	53	2	T|0.518;C|0.482	155
EVC2	132884	bcgsc.ca	37	4	5642274	5642274	+	Silent	SNP	T	T	C	rs13131655	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EVC2	NM_147127	exon10	c.A1437G	p.E479E	.	.	341	18	113	0	T|0.716;C|0.284	155
EXD1	161829	bcgsc.ca	37	15	41476465	41476465	+	Silent	SNP	G	G	A	rs690733	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXD1	NM_152596	exon10	c.C1209T	p.T403T	.	.	404	32	152	0	G|0.476;A|0.524	91
EXD1	161829	bcgsc.ca	37	15	41483682	41483682	+	Silent	SNP	A	A	G	rs1971131	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXD1	NM_152596	exon8	c.T648C	p.P216P	.	.	194	10	66	0	A|0.702;G|0.298	91
EXO1	9156	bcgsc.ca	37	1	242030151	242030151	+	Missense_Mutation	SNP	A	A	G	rs735943	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXO1	NM_130398	exon11	c.A1061G	p.H354R	.	.	65	4	57	0	T|0.067;G|0.485	661
EXO1	9156	bcgsc.ca	37	1	242048674	242048674	+	Missense_Mutation	SNP	C	C	T	rs9350	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXO1	NM_130398	exon15	c.C2270T	p.P757L	.	.	102	9	48	0	C|0.786;T|0.214	661
EXO1	9156	ucsc.edu;bcgsc.ca	37	1	242042545	242042545	+	Missense_Mutation	SNP	A	A	G	rs1776148	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXO1	NM_130398	exon13	c.A2009G	p.E670G	.	.	104	11	45	0	A|0.322;G|0.677	661
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56770509	56770509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOC1	NM_018261	exon19	c.G2533A	p.V845M	.	.	135	37	71	0	.	950
EXOC2	55770	bcgsc.ca	37	6	599209	599209	+	Silent	SNP	T	T	C	rs61748570	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	EXOC2,NS,NS,0	EXOC2	NM_018303	exon8	c.A759G	p.A253A	.	.	227	17	106	0	T|0.908;C|0.092	662
EXOC4	60412	bcgsc.ca	37	7	133682285	133682285	+	Silent	SNP	C	C	T	rs34608222	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOC4	NM_021807	exon15	c.C2247T	p.L749L	.	.	152	5	52	0	C|0.986;T|0.014	159
EXOC5	10640	bcgsc.ca	37	14	57676330	57676330	+	Silent	SNP	G	G	T	rs1804820	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOC5	NM_006544	exon17	c.C1893A	p.A631A	.	.	259	18	96	0	G|0.765;T|0.235	137
EXOC6B	23233	bcgsc.ca	37	2	72707874	72707874	+	Silent	SNP	A	A	G	rs653220	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOC6B	NM_015189	exon17	c.T1671C	p.V557V	.	.	115	10	58	0	A|0.639;G|0.361	68
EXOC6B	23233	bcgsc.ca	37	2	72958333	72958333	+	Silent	SNP	T	T	C	rs61736520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOC6B	NM_015189	exon4	c.A369G	p.Q123Q	.	.	532	17	164	0	T|0.816;C|0.184	68
EXOSC10	5394	bcgsc.ca	37	1	11147900	11147900	+	Missense_Mutation	SNP	T	T	C	rs143526730	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOSC10	NM_002685	exon8	c.A902G	p.N301S	.	.	206	7	78	0	T|0.999;C|0.001	116
EXOSC9	5393	hgsc.bcm.edu	37	4	122738009	122738009	+	Missense_Mutation	SNP	T	T	G	rs143634561		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXOSC9	NM_001034194	exon13	c.T1369G	p.X457E	.	.	345	20	182	0	T|1.000;G|0.000	90
EXPH5	23086	bcgsc.ca	37	11	108383676	108383676	+	Missense_Mutation	SNP	A	A	G	rs10749920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXPH5	NM_015065	exon6	c.T2558C	p.L853P	.	.	267	20	142	0	A|0.676;G|0.324	95
EXT1	2131	bcgsc.ca	37	8	118832020	118832020	+	Silent	SNP	G	G	A	rs17439693	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EXT1	NM_000127	exon6	c.C1431T	p.P477P	.	.	347	18	42	0	G|0.849;A|0.151	660
EYA4	2070	bcgsc.ca	37	6	133789728	133789728	+	Missense_Mutation	SNP	G	G	A	rs9493627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EYA4	NM_172105	exon11	c.G829A	p.G277S	.	.	162	14	77	0	G|0.600;A|0.400	578
EYS	346007	bcgsc.ca	37	6	65149185	65149185	+	Missense_Mutation	SNP	T	T	A	rs9353806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EYS	NM_001142800	exon27	c.A5705T	p.N1902I	.	.	260	16	120	0	T|0.686;A|0.314	660
EYS	346007	bcgsc.ca	37	6	66042231	66042231	+	Missense_Mutation	SNP	T	T	G	rs12207746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EYS	NM_001142801	exon12	c.A1846C	p.I616L	.	.	255	9	93	0	T|0.889;G|0.111	660
EYS	346007	hgsc.bcm.edu;bcgsc.ca	37	6	65300716	65300716	+	Missense_Mutation	SNP	C	C	A	rs75831552	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	EYS	NM_001142800	exon26	c.G5044T	p.D1682Y	.	.	176	9	77	0	C|0.986;A|0.014	660
F13A1	2162	bcgsc.ca	37	6	6152137	6152137	+	Missense_Mutation	SNP	C	C	G	rs5988	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	F13A1	NM_000129	exon14	c.G1954C	p.E652Q	.	.	87	4	39	0	C|0.629;G|0.371	519
F5	2153	bcgsc.ca	37	1	169511903	169511903	+	Missense_Mutation	SNP	G	G	A	rs6031	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	F5	NM_000130	exon13	c.C2425T	p.P809S	.	.	409	9	158	0	G|0.971;A|0.029	157
F5	2153	bcgsc.ca	37	1	169519112	169519112	+	Missense_Mutation	SNP	C	C	T	rs6020	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	F5	NM_000130	exon10	c.G1538A	p.R513K	.	.	311	18	97	0	C|0.805;T|0.195	157
F5	2153	bcgsc.ca	37	1	169529973	169529973	+	Silent	SNP	C	C	T	rs6029	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	F5	NM_000130	exon4	c.G405A	p.A135A	.	.	136	10	78	0	C|0.653;T|0.347	157
F5	2153	ucsc.edu;bcgsc.ca	37	1	169529826	169529826	+	Silent	SNP	C	C	A	rs6022	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	F5	NM_000130	exon4	c.G552T	p.S184S	.	.	192	19	77	0	C|0.638;A|0.362	157
FAAH2	158584	bcgsc.ca	37	X	57475132	57475132	+	Silent	SNP	T	T	C	rs1367830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAAH2	NM_174912	exon10	c.T1404C	p.P468P	.	.	151	11	49	0	T|0.410;0|0.015	133
FAAH	2166	bcgsc.ca	37	1	46870761	46870761	+	Missense_Mutation	SNP	C	C	A	rs324420	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAAH	NM_001441	exon3	c.C385A	p.P129T	.	.	104	5	53	0	C|0.748;A|0.252	154
FAIM	55179	bcgsc.ca	37	3	138347957	138347957	+	Missense_Mutation	SNP	G	G	A	rs641320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAIM	NM_001033030	exon5	c.G451A	p.A151T	.	.	185	13	100	0	G|0.570;T|0.047	227
FAIM	55179	bcgsc.ca	37	3	138347988	138347988	+	Missense_Mutation	SNP	T	T	C	rs13043	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAIM	NM_001033030	exon5	c.T482C	p.L161S	.	.	222	13	109	1	T|0.810;C|0.190	227
FAM108A1	81926	ucsc.edu;bcgsc.ca	37	19	1880950	1880950	+	Missense_Mutation	SNP	T	T	C	rs4807160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM108A1	NM_031213	exon3	c.A430G	p.K144E	.	.	83	11	33	0	T|0.372;C|0.628	90
FAM114A1	92689	bcgsc.ca	37	4	38916631	38916631	+	Silent	SNP	T	T	C	rs4261994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM114A1	NM_138389	exon8	c.T882C	p.D294D	.	.	130	8	54	0	T|0.939;C|0.061	69
FAM114A2	10827	bcgsc.ca	37	5	153413390	153413390	+	Missense_Mutation	SNP	C	C	T	rs2578377	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM114A2	NM_018691	exon4	c.G364A	p.G122S	.	.	296	19	128	0	C|0.344;T|0.656	90
FAM118A	55007	ucsc.edu;bcgsc.ca	37	22	45723807	45723807	+	Missense_Mutation	SNP	G	G	C	rs11556482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM118A	NM_017911	exon4	c.G385C	p.V129L	.	.	78	13	45	0	G|0.539;C|0.461	90
FAM118A	55007	ucsc.edu;bcgsc.ca	37	22	45723842	45723842	+	Silent	SNP	G	G	A	rs17851057	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM118A	NM_017911	exon4	c.G420A	p.R140R	.	.	75	12	40	0	G|0.539;A|0.461	90
FAM118A	55007	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45728370	45728370	+	Missense_Mutation	SNP	G	G	A	rs6007594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM118A	NM_017911	exon6	c.G716A	p.R239H	.	.	242	32	140	0	G|0.536;A|0.464	90
FAM120A	23196	bcgsc.ca	37	9	96238578	96238578	+	Silent	SNP	C	C	T	rs10821135	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM120A	NM_014612	exon3	c.C762T	p.H254H	.	.	180	11	100	1	C|0.447;T|0.553	90
FAM120A	23196	bcgsc.ca	37	9	96278474	96278474	+	Silent	SNP	C	C	T	rs77023914		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM120A	NM_014612	exon7	c.C1341T	p.H447H	.	.	484	37	209	0	.	90
FAM126A	84668	bcgsc.ca	37	7	23015831	23015831	+	Silent	SNP	T	T	C	rs3735231	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM126A	NM_032581	exon7	c.A624G	p.S208S	.	.	88	9	28	0	T|0.643;C|0.357	90
FAM127B	26071	bcgsc.ca	37	X	134185997	134185997	+	Missense_Mutation	SNP	T	T	A	rs2498776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM127B	NM_001078172	exon1	c.A142T	p.S48C	.	.	200	16	63	0	T|0.407;A|0.593	22
FAM127C	441518	hgsc.bcm.edu;bcgsc.ca	37	X	134156292	134156292	+	Silent	SNP	C	C	G	rs190970621		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM127C	NM_001078173	exon1	c.G198C	p.T66T	.	.	160	12	64	0	C|0.981;G|0.019	62
FAM131C	348487	bcgsc.ca	37	1	16389026	16389026	+	Missense_Mutation	SNP	T	T	C	rs75282986		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM131C	NM_182623	exon3	c.A142G	p.K48E	.	.	247	15	100	0	.	514
FAM134B	54463	bcgsc.ca	37	5	16475199	16475199	+	Missense_Mutation	SNP	C	C	G	rs61733811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM134B	NM_001034850	exon9	c.G1145C	p.S382T	.	.	316	13	135	0	C|0.961;G|0.039	137
FAM135A	57579	bcgsc.ca	37	6	71236216	71236216	+	Silent	SNP	C	C	T	rs7740873	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM135A	NM_001162529	exon13	c.C3429T	p.N1143N	.	.	387	16	167	0	C|0.735;T|0.265	90
FAM13A	10144	bcgsc.ca	37	4	89653257	89653257	+	Silent	SNP	G	G	A	rs1801915	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM13A	NM_014883	exon22	c.C2739T	p.D913D	.	.	372	29	147	1	G|0.832;A|0.168	70
FAM13A	10144	bcgsc.ca	37	4	89668859	89668859	+	Missense_Mutation	SNP	C	C	T	rs7657817	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM13A	NM_014883	exon18	c.G2305A	p.V769I	.	.	343	32	113	0	C|0.745;T|0.255	70
FAM13A	10144	bcgsc.ca	37	4	89772301	89772301	+	Missense_Mutation	SNP	C	C	A	rs7680970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM13A	NM_014883	exon7	c.G877T	p.A293S	.	.	132	5	47	0	C|0.918;A|0.082	70
FAM13A	10144	ucsc.edu;bcgsc.ca	37	4	89670155	89670155	+	Silent	SNP	C	C	T	rs3756050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM13A	NM_014883	exon17	c.G2109A	p.P703P	.	.	146	15	34	0	C|0.535;T|0.465	70
FAM149A	25854	bcgsc.ca	37	4	187088410	187088410	+	Missense_Mutation	SNP	T	T	G	rs6818265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM149A	NM_001006655	exon12	c.T1369G	p.L457V	.	.	266	23	124	0	T|0.979;G|0.021	90
FAM151A	338094	bcgsc.ca	37	1	55076197	55076197	+	Silent	SNP	C	C	T	rs58464768	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM151A	NM_176782	exon7	c.G972A	p.T324T	.	.	81	5	38	0	C|0.950;T|0.050	90
FAM154B	283726	bcgsc.ca	37	15	82574462	82574462	+	Missense_Mutation	SNP	G	G	T	rs145652386	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM154B	NM_001008226	exon3	c.G256T	p.D86Y	.	.	162	5	70	0	G|0.989;T|0.011	70
FAM155B	27112	bcgsc.ca	37	X	68725640	68725640	+	Missense_Mutation	SNP	T	T	C	rs1171942	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM155B	NM_015686	exon1	c.T515C	p.L172P	.	.	157	18	59	0	T|0.455;C|0.545	131
FAM161B	145483	bcgsc.ca	37	14	74404756	74404756	+	Missense_Mutation	SNP	T	T	C	rs28927675	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM161B	NM_152445	exon6	c.A1649G	p.K550R	.	.	549	29	137	1	T|0.585;C|0.415	91
FAM161B	145483	bcgsc.ca	37	14	74413129	74413129	+	Silent	SNP	C	C	G	rs7146634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM161B	NM_152445	exon2	c.G423C	p.G141G	.	.	247	12	60	0	C|0.648;G|0.352	91
FAM174A	345757	bcgsc.ca	37	5	99897866	99897866	+	Silent	SNP	G	G	A	rs6874840	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM174A	NM_198507	exon2	c.G543A	p.T181T	.	.	335	12	176	0	G|0.774;A|0.226	90
FAM177A1	283635	bcgsc.ca	37	14	35546373	35546373	+	Silent	SNP	T	T	C	rs3211139	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM177A1	NM_173607	exon3	c.T357C	p.G119G	.	.	436	18	168	0	T|0.834;C|0.166	226
FAM179A	165186	hgsc.bcm.edu;bcgsc.ca	37	2	29221031	29221031	+	Silent	SNP	C	C	A	rs184438116		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM179A	NM_199280	exon3	c.C51A	p.A17A	.	.	324	13	75	0	C|0.996;A|0.004	26
FAM184B	27146	bcgsc.ca	37	4	17660082	17660082	+	Missense_Mutation	SNP	C	C	T	rs1860596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM184B	NM_015688	exon10	c.G1928A	p.R643H	.	.	177	14	44	0	C|0.379;T|0.621	23
FAM184B	27146	bcgsc.ca	37	4	17694943	17694943	+	Silent	SNP	A	A	G	rs3733579	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM184B	NM_015688	exon6	c.T1470C	p.L490L	.	.	455	15	112	0	A|0.333;G|0.667	23
FAM186A	121006	bcgsc.ca	37	12	50727706	50727706	+	Missense_Mutation	SNP	G	G	C	rs6580741	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM186A	NM_001145475	exon5	c.C6684G	p.H2228Q	.	.	418	17	150	0	G|0.688;C|0.312	68
FAM186A	121006	bcgsc.ca	37	12	50749294	50749294	+	Silent	SNP	A	A	G	rs4421818	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM186A	NM_001145475	exon4	c.T1321C	p.L441L	.	.	255	7	99	0	A|0.677;G|0.323	68
FAM188B	84182	ucsc.edu;bcgsc.ca	37	7	30830902	30830902	+	Missense_Mutation	SNP	C	C	T	rs17159453	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM188B	NM_032222	exon5	c.C785T	p.S262L	.	.	88	9	45	0	C|0.968;T|0.032	90
FAM188B	84182	bcgsc.ca	37	7	30831088	30831088	+	Missense_Mutation	SNP	G	G	A	rs35897481	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM188B	NM_032222	exon5	c.G971A	p.R324K	.	.	84	7	33	0	G|0.881;A|0.119	90
FAM200A	221786	bcgsc.ca	37	7	99145845	99145845	+	Silent	SNP	C	C	T	rs10238965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM200A	NM_145111	exon2	c.G186A	p.L62L	.	.	511	38	194	0	C|0.566;T|0.434	90
FAM200B	285550	bcgsc.ca	37	4	15688681	15688681	+	Silent	SNP	T	T	C	rs1053112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145191	exon2	c.T81C	p.S27S	.	.	330	9	162	0	T|0.976;C|0.024	.
FAM205A	259308	bcgsc.ca	37	9	34729392	34729392	+	Silent	SNP	A	A	G	rs12337278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001141917	exon1	c.T33C	p.V11V	.	.	170	14	80	0	A|0.915;G|0.085	.
FAM205A	259308	ucsc.edu	37	9	34726524	34726524	+	Missense_Mutation	SNP	G	G	A	rs1810820	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001141917	exon4	c.C713T	p.T238M	.	.	65	7	21	0	G|0.816;A|0.184	.
FAM205B	389715	bcgsc.ca	37	9	34835217	34835217	+	RNA	SNP	C	C	T	rs3934948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	1154	41	416	0	C|0.897;T|0.103	.
FAM208A	23272	bcgsc.ca	37	3	56657257	56657257	+	Silent	SNP	C	C	T	rs10510787	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015224	exon17	c.G3510A	p.Q1170Q	.	.	156	6	122	0	C|0.964;T|0.036	.
FAM208A	23272	bcgsc.ca	37	3	56675504	56675504	+	Missense_Mutation	SNP	G	G	C	rs17056999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001112736	exon15	c.C2492G	p.A831G	.	.	276	13	74	0	G|0.970;C|0.030	.
FAM210A	125228	bcgsc.ca	37	18	13682057	13682057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001098801	exon3	c.G20A	p.R7Q	.	.	168	6	51	0	.	.
FAM211B	388886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24982055	24982057	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_207644	exon4	c.745_747del	p.249_249del	.	.	53	16	40	0	.	.
FAM214A	56204	bcgsc.ca	37	15	52877016	52877016	+	Silent	SNP	T	T	C	rs61731680	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019600	exon12	c.A3003G	p.E1001E	.	.	537	18	234	0	T|0.982;C|0.018	.
FAM217A	222826	bcgsc.ca	37	6	4069166	4069166	+	Missense_Mutation	SNP	C	C	T	rs595413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173563	exon7	c.G1291A	p.V431I	.	.	213	9	133	0	C|0.413;T|0.587	.
FAM217A	222826	bcgsc.ca	37	6	4069685	4069685	+	Missense_Mutation	SNP	C	C	T	rs639905	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173563	exon7	c.G772A	p.A258T	.	.	286	12	141	0	C|0.732;T|0.268	.
FAM217A	222826	bcgsc.ca	37	6	4073541	4073541	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173563	exon6	c.T270C	p.C90C	.	.	159	6	74	0	.	.
FAM218A	152756	bcgsc.ca	37	4	165878609	165878609	+	Silent	SNP	T	T	A	rs3196673	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153027	exon1	c.T435A	p.S145S	.	.	242	21	134	0	T|0.592;A|0.408	.
FAM218A	152756	hgsc.bcm.edu;bcgsc.ca	37	4	165878567	165878567	+	Missense_Mutation	SNP	G	G	C	rs73871552	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153027	exon1	c.G393C	p.R131S	.	.	331	19	165	0	G|0.979;C|0.021	.
FAM21C	253725	bcgsc.ca	37	10	46246266	46246266	+	Missense_Mutation	SNP	G	G	T	rs182442683		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM21C	NM_015262	exon10	c.G911T	p.R304L	.	.	314	12	85	0	G|0.986;T|0.014	91
FAM220A	84792	bcgsc.ca	37	7	6370144	6370144	+	Silent	SNP	G	G	A	rs1043965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001037163	exon2	c.C642T	p.D214D	.	.	202	7	75	0	G|0.628;A|0.372	.
FAM221B	392307	bcgsc.ca	37	9	35825982	35825982	+	Silent	SNP	C	C	T	rs77160300		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001012446	exon2	c.G177A	p.V59V	.	.	126	6	35	0	C|0.989;T|0.011	.
FAM221B	392307	bcgsc.ca	37	9	35826038	35826038	+	Missense_Mutation	SNP	T	T	C	rs13294245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001012446	exon2	c.A121G	p.K41E	.	.	148	7	37	0	T|0.758;C|0.242	.
FAM35DP	439965	bcgsc.ca	37	10	47416860	47416860	+	RNA	SNP	G	G	C	rs76723930		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NR_027634	exon6	c.2197-1G>C	.	.	.	2954	51	880	0	.	.
FAM47C	442444	bcgsc.ca	37	X	37027007	37027007	+	Missense_Mutation	SNP	C	C	A	rs28706806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM47C	NM_001013736	exon1	c.C524A	p.P175H	.	.	78	7	41	0	C|0.879;A|0.121	111
FAM47C	442444	bcgsc.ca	37	X	37028127	37028127	+	Silent	SNP	A	A	G	rs73631164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM47C	NM_001013736	exon1	c.A1644G	p.P548P	.	.	129	7	35	0	A|0.644;G|0.356	111
FAM47C	442444	bcgsc.ca	37	X	37029254	37029254	+	Missense_Mutation	SNP	A	A	C	rs1995914	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM47C	NM_001013736	exon1	c.A2771C	p.N924T	.	.	102	7	46	0	A|0.631;C|0.369	111
FAM53A	152877	bcgsc.ca	37	4	1659162	1659162	+	Missense_Mutation	SNP	C	C	T	rs3860715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM53A	NM_001013622	exon3	c.G109A	p.G37S	.	.	77	5	35	0	C|0.901;T|0.099	90
FAM65B	9750	bcgsc.ca	37	6	24818785	24818785	+	Silent	SNP	A	A	G	rs9358802	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM65B	NM_014722	exon21	c.T3000C	p.A1000A	.	.	171	9	48	0	A|0.664;G|0.336	91
FAM71E2	284418	bcgsc.ca	37	19	55872591	55872591	+	Missense_Mutation	SNP	C	C	T	rs2124920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145402	exon5	c.G605A	p.R202H	.	.	98	9	32	0	C|0.859;T|0.141	.
FAM76B	143684	ucsc.edu;bcgsc.ca	37	11	95512060	95512060	+	Silent	SNP	A	A	G	rs1150360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM76B	NM_144664	exon8	c.T754C	p.L252L	.	.	141	15	95	0	A|0.409;C|0.004	90
FAM83B	222584	bcgsc.ca	37	6	54735122	54735122	+	Silent	SNP	A	A	G	rs1472679	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM83B	NM_001010872	exon2	c.A78G	p.E26E	.	.	222	9	82	0	A|0.584;G|0.416	96
FAM83C	128876	bcgsc.ca	37	20	33874720	33874720	+	Missense_Mutation	SNP	C	C	T	rs2425049	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM83C	NM_178468	exon4	c.G1862A	p.R621Q	.	.	140	12	41	0	C|0.647;T|0.353	92
FAM83C	128876	bcgsc.ca	37	20	33874784	33874784	+	Missense_Mutation	SNP	A	A	G	rs35560631	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM83C	NM_178468	exon4	c.T1798C	p.Y600H	.	.	72	5	31	0	A|0.891;G|0.109	92
FAM86B2	653333	bcgsc.ca	37	8	12287940	12287940	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001137610	exon4	c.G261A	p.E87E	.	.	334	15	137	0	.	.
FAM86EP	348926	bcgsc.ca	37	4	3954873	3954873	+	RNA	SNP	A	A	T	rs61082048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	182	6	46	0	A|0.645;T|0.355	.
FAM86EP	348926	bcgsc.ca	37	4	3954878	3954878	+	RNA	SNP	T	T	C	rs58515458	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	192	6	43	1	T|0.645;C|0.355	.
FAM86FP	653113	bcgsc.ca	37	12	8389625	8389625	+	RNA	SNP	C	C	G	rs2965691	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	146	6	31	0	C|0.568;G|0.432	.
FAM86HP	729375	bcgsc.ca	37	3	129828078	129828078	+	RNA	SNP	T	T	G	rs16834628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	169	9	46	0	T|0.884;G|0.116	.
FAM86JP	100125556	bcgsc.ca	37	3	125647371	125647371	+	RNA	SNP	G	G	A	rs145288911	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	485	31	110	0	G|0.989;A|0.011	.
FAM86JP	100125556	bcgsc.ca	37	3	125647401	125647401	+	RNA	SNP	A	A	C	rs11711840	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	458	30	107	0	A|0.955;C|0.045	.
FAM98A	25940	bcgsc.ca	37	2	33809984	33809984	+	Silent	SNP	A	A	G	rs11893662	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAM98A	NM_015475	exon8	c.T1416C	p.G472G	.	.	155	7	69	0	A|0.983;G|0.017	91
FANCA	2175	bcgsc.ca	37	16	89836323	89836323	+	Missense_Mutation	SNP	C	C	T	rs7195066	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FANCA	NM_000135	exon26	c.G2426A	p.G809D	.	.	57	4	41	0	C|0.485;T|0.515	1130
FANCA	2175	bcgsc.ca	37	16	89849480	89849480	+	Missense_Mutation	SNP	C	C	T	rs2239359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FANCA	NM_000135	exon16	c.G1501A	p.G501S	.	.	236	9	92	0	C|0.439;N|0.001	1130
FANCA	2175	bcgsc.ca	37	16	89866043	89866043	+	Missense_Mutation	SNP	T	T	C	rs7190823	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FANCA	NM_000135	exon9	c.A796G	p.T266A	.	.	113	8	51	0	T|0.408;C|0.592	1130
FANCA	2175	bcgsc.ca	37	16	89869704	89869704	+	Missense_Mutation	SNP	T	T	C	rs17225943	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FANCA	NM_000135	exon8	c.A755G	p.D252G	.	.	214	10	89	0	T|0.975;C|0.025	1130
FANCA	2175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	89836575	89836575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FANCA	NM_000135	exon25	c.A2315G	p.Q772R	.	.	37	17	12	0	.	1130
FANCC	2176	hgsc.bcm.edu;bcgsc.ca	37	9	97934367	97934367	+	Silent	SNP	T	T	C	rs1800360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FANCC	NM_001243743	exon5	c.A408G	p.Q136Q	.	.	217	13	108	0	T|0.973;C|0.027	970
FAS	355	bcgsc.ca	37	10	90762801	90762801	+	Missense_Mutation	SNP	G	G	A	rs3218619	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAS	NM_152872	exon2	c.G46A	p.A16T	.	.	246	9	58	0	G|0.956;A|0.044	847
FAS	355	bcgsc.ca	37	10	90770554	90770554	+	Missense_Mutation	SNP	A	A	G	rs28362322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAS	NM_152872	exon6	c.A550G	p.I184V	.	.	464	13	103	0	A|0.996;G|0.004	847
FASTKD1	79675	bcgsc.ca	37	2	170403106	170403106	+	Silent	SNP	G	G	A	rs16857030	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FASTKD1	NM_024622	exon8	c.C1323T	p.A441A	.	.	289	13	123	0	G|0.902;A|0.098	119
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92616006	92616006	+	Silent	SNP	C	C	T	rs58474174		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAT3	NM_001008781	exon23	c.C12384T	p.Y4128Y	.	.	71	6	28	0	C|0.976;T|0.024	73
FAT4	79633	bcgsc.ca	37	4	126239986	126239986	+	Missense_Mutation	SNP	C	C	T	rs1039808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAT4	NM_024582	exon1	c.C2420T	p.A807V	.	.	225	15	49	0	C|0.580;T|0.420	108
FAT4	79633	bcgsc.ca	37	4	126412106	126412106	+	Missense_Mutation	SNP	C	C	G	rs147662558	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FAT4	NM_024582	exon17	c.C14129G	p.S4710C	.	.	164	6	78	0	C|0.986;G|0.014	108
FBLIM1	54751	bcgsc.ca	37	1	16101217	16101217	+	Silent	SNP	C	C	T	rs41268337	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBLIM1	NM_001024215	exon6	c.C816T	p.C272C	.	.	114	9	51	0	C|0.920;T|0.080	91
FBP2	8789	hgsc.bcm.edu;bcgsc.ca	37	9	97333825	97333825	+	Silent	SNP	G	G	A	rs73531436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBP2	NM_003837	exon4	c.C486T	p.A162A	.	.	84	7	36	0	G|0.991;A|0.009	226
FBXL12	54850	bcgsc.ca	37	19	9922223	9922223	+	Silent	SNP	G	G	A	rs17849496	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXL12	NM_017703	exon3	c.C330T	p.H110H	.	.	144	11	28	0	G|0.894;A|0.106	227
FBXL18	80028	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	5540245	5540245	+	Missense_Mutation	SNP	T	T	C	rs74478333		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXL18	NM_024963	exon3	c.A1655G	p.N552S	.	.	77	8	28	0	T|0.983;C|0.017	651
FBXO11	80204	hgsc.bcm.edu;bcgsc.ca	37	2	48066624	48066624	+	Missense_Mutation	SNP	T	T	A	rs17036993	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO11	NM_001190274	exon3	c.A376T	p.T126S	.	.	338	14	104	0	T|0.974;A|0.026	659
FBXO15	201456	bcgsc.ca	37	18	71740774	71740774	+	Silent	SNP	G	G	A	rs114044705	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO15	NM_001142958	exon10	c.C1455T	p.T485T	.	.	213	9	102	0	G|0.994;A|0.006	229
FBXO16	157574	bcgsc.ca	37	8	28304769	28304769	+	Missense_Mutation	SNP	C	C	T	rs1390963	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO16	NM_172366	exon7	c.G762A	p.M254I	.	.	345	16	156	1	C|0.566;T|0.434	227
FBXO16	157574	hgsc.bcm.edu;bcgsc.ca	37	8	28321156	28321156	+	Silent	SNP	G	G	A	rs149976851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO16	NM_172366	exon4	c.C315T	p.D105D	.	.	131	8	73	0	G|1.000;A|0.000	227
FBXO34	55030	bcgsc.ca	37	14	55817708	55817708	+	Silent	SNP	T	T	C	rs10144418	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO34	NM_017943	exon2	c.T600C	p.Y200Y	.	.	345	12	125	0	T|0.655;C|0.345	228
FBXO34	55030	bcgsc.ca	37	14	55818517	55818517	+	Missense_Mutation	SNP	T	T	A	rs1045002	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO34	NM_017943	exon2	c.T1409A	p.I470N	.	.	366	17	185	1	A|0.365;N|0.000	228
FBXO34	55030	bcgsc.ca	37	14	55818706	55818706	+	Missense_Mutation	SNP	T	T	C	rs3742569	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO34	NM_017943	exon2	c.T1598C	p.L533P	.	.	299	19	108	0	T|0.582;C|0.418	228
FBXO38	81545	bcgsc.ca	37	5	147805120	147805120	+	Missense_Mutation	SNP	T	T	C	rs10043775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO38	NM_001271723	exon14	c.T1774C	p.S592P	.	.	210	10	121	1	T|0.734;C|0.266	231
FBXO38	81545	bcgsc.ca	37	5	147806815	147806815	+	Missense_Mutation	SNP	A	A	G	rs140204686		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO38	NM_030793	exon15	c.A1958G	p.N653S	.	.	219	10	96	0	A|1.000;G|0.000	231
FBXO38	81545	hgsc.bcm.edu;bcgsc.ca	37	5	147818022	147818022	+	Silent	SNP	C	C	T	rs144172824	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO38	NM_030793	exon18	c.C2760T	p.P920P	.	.	129	12	77	0	C|1.000;T|0.000	231
FBXO42	54455	bcgsc.ca	37	1	16578137	16578137	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO42	NM_018994	exon10	c.A1182G	p.P394P	.	.	123	5	49	1	.	228
FBXO47	494188	bcgsc.ca	37	17	37101228	37101228	+	Missense_Mutation	SNP	T	T	C	rs114212170	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXO47	NM_001008777	exon7	c.A778G	p.I260V	.	.	130	6	56	0	T|0.997;C|0.003	90
FBXW10	10517	bcgsc.ca	37	17	18653145	18653145	+	Missense_Mutation	SNP	C	C	G	rs75316384		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXW10	NM_001267585	exon3	c.C781G	p.L261V	.	.	561	28	183	0	.	91
FBXW8	26259	hgsc.bcm.edu;bcgsc.ca	37	12	117423069	117423069	+	Silent	SNP	C	C	T	rs138454816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXW8	NM_153348	exon6	c.C894T	p.H298H	.	.	239	12	120	0	C|0.989;T|0.011	229
FBXW9	84261	bcgsc.ca	37	19	12805431	12805431	+	Missense_Mutation	SNP	T	T	C	rs10424623	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FBXW9	NM_032301	exon3	c.A655G	p.T219A	.	.	105	5	44	0	T|0.921;C|0.079	227
FCER2	2208	bcgsc.ca	37	19	7763248	7763248	+	Missense_Mutation	SNP	G	G	A	rs2228137	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCER2	NM_002002	exon4	c.C184T	p.R62W	.	.	169	8	80	0	G|0.809;N|0.000	130
FCGBP	8857	bcgsc.ca	37	19	40363954	40363954	+	Silent	SNP	G	G	A	rs73554463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCGBP	NM_003890	exon31	c.C14688T	p.S4896S	.	.	149	7	59	0	G|0.980;A|0.020	98
FCGBP	8857	bcgsc.ca	37	19	40366269	40366269	+	Silent	SNP	G	G	A	rs73554465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCGBP	NM_003890	exon30	c.C13965T	p.T4655T	.	.	89	6	46	0	G|0.982;A|0.018	98
FCGBP	8857	hgsc.bcm.edu;bcgsc.ca	37	19	40419732	40419732	+	Missense_Mutation	SNP	C	C	T	rs34041323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCGBP	NM_003890	exon6	c.G3262A	p.V1088M	.	.	103	6	35	0	C|0.996;T|0.004	98
FCGR2A	2212	bcgsc.ca	37	1	161479745	161479745	+	Missense_Mutation	SNP	A	A	G	rs1801274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCGR2A	NM_001136219	exon4	c.A500G	p.H167R	.	.	729	23	271	1	G|0.474;N|0.000	91
FCHSD1	89848	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	141028552	141028552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCHSD1	NM_033449	exon7	c.G548A	p.R183Q	.	.	397	20	105	0	.	230
FCN2	2220	bcgsc.ca	37	9	137775155	137775155	+	Silent	SNP	T	T	C	rs4520243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCN2	NM_004108	exon3	c.T222C	p.R74R	.	.	75	5	35	0	T|0.642;C|0.358	153
FCRL3	115352	bcgsc.ca	37	1	157650539	157650539	+	Missense_Mutation	SNP	G	G	A	rs944627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRL3	NM_052939	exon13	c.C1979T	p.P660L	.	.	297	13	111	0	G|0.956;A|0.044	156
FCRL4	83417	bcgsc.ca	37	1	157548323	157548323	+	Missense_Mutation	SNP	T	T	C	rs2039401	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRL4	NM_031282	exon10	c.A1370G	p.K457R	.	.	200	9	69	0	T|0.982;C|0.018	229
FCRL4	83417	bcgsc.ca	37	1	157557149	157557149	+	Missense_Mutation	SNP	T	T	C	rs4561035	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRL4	NM_031282	exon5	c.A764G	p.N255S	.	.	150	10	42	0	T|0.983;C|0.017	229
FCRL5	83416	bcgsc.ca	37	1	157489535	157489535	+	Silent	SNP	G	G	A	rs3827757	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRL5	NM_031281	exon13	c.C2658T	p.A886A	.	.	288	12	79	0	G|0.879;A|0.121	156
FCRL5	83416	bcgsc.ca	37	1	157490863	157490863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRL5	NM_031281	exon11	c.A2459G	p.E820G	.	.	165	5	48	0	.	156
FCRL6	343413	bcgsc.ca	37	1	159779985	159779985	+	Missense_Mutation	SNP	G	G	T	rs73030822	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRL6	NM_001004310	exon6	c.G988T	p.V330L	.	.	289	10	82	1	G|0.955;T|0.045	93
FCRLA	84824	bcgsc.ca	37	1	161681780	161681780	+	Missense_Mutation	SNP	A	A	G	rs2275603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FCRLA	NM_001184866	exon5	c.A625G	p.S209G	.	.	207	9	73	0	A|0.594;G|0.405	226
FEM1B	10116	bcgsc.ca	37	15	68582068	68582068	+	Silent	SNP	C	C	G	rs35525989	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FEM1B	NM_015322	exon2	c.C372G	p.P124P	.	.	178	6	78	0	C|0.986;G|0.014	90
FEM1B	10116	bcgsc.ca	37	15	68582359	68582359	+	Silent	SNP	G	G	A	rs34917142	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FEM1B	NM_015322	exon2	c.G663A	p.T221T	.	.	76	5	43	0	A|0.014;C|0.000;G|0.986	90
FER1L6	654463	bcgsc.ca	37	8	125035788	125035788	+	Silent	SNP	G	G	C	rs4358790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FER1L6	NM_001039112	exon18	c.G2238C	p.A746A	.	.	294	8	49	0	G|0.427;C|0.573	100
FER	2241	bcgsc.ca	37	5	108133967	108133967	+	Silent	SNP	A	A	G	rs2229085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FER	NM_005246	exon3	c.A84G	p.V28V	.	.	334	10	160	0	A|0.801;G|0.199	946
FER	2241	bcgsc.ca	37	5	108233462	108233462	+	Silent	SNP	A	A	G	rs35990968	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FER	NM_005246	exon10	c.A1149G	p.L383L	.	.	286	7	163	0	A|0.977;G|0.023	946
FER	2241	hgsc.bcm.edu;bcgsc.ca	37	5	108233547	108233547	+	Missense_Mutation	SNP	A	A	G	rs33940843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FER	NM_005246	exon10	c.A1234G	p.M412V	.	.	258	12	139	0	A|0.977;G|0.023	946
FETUB	26998	bcgsc.ca	37	3	186360305	186360305	+	Missense_Mutation	SNP	A	A	G	rs77346508	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FETUB	NM_014375	exon3	c.A382G	p.R128G	.	.	214	9	66	0	A|0.983;G|0.017	92
FETUB	26998	bcgsc.ca	37	3	186370333	186370333	+	Silent	SNP	G	G	T	rs1131364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FETUB	NM_014375	exon7	c.G1062T	p.V354V	.	.	186	15	65	0	G|0.402;T|0.598	92
FEV	54738	bcgsc.ca	37	2	219846749	219846749	+	Silent	SNP	G	G	A	rs860573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FEV	NM_017521	exon3	c.C357T	p.G119G	.	.	182	14	66	0	G|0.902;A|0.098	846
FEZ2	9637	bcgsc.ca	37	2	36782886	36782886	+	Missense_Mutation	SNP	G	G	A	rs848642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FEZ2	NM_001042548	exon8	c.C1066T	p.R356C	.	.	156	12	79	0	G|0.288;T|0.213	23
FEZ2	9637	bcgsc.ca	37	2	36810586	36810586	+	Silent	SNP	T	T	C	rs14291	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FEZ2	NM_001042548	exon3	c.A402G	p.T134T	.	.	222	11	84	1	T|0.566;C|0.434	23
FGD1	2245	bcgsc.ca	37	X	54476149	54476149	+	Silent	SNP	A	A	G	rs12011120	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FGD1	NM_004463	exon14	c.T2091C	p.T697T	.	.	194	16	65	0	A|0.784;0|0.003	231
FGF20	26281	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	16850601	16850601	+	Missense_Mutation	SNP	C	C	T	rs17550360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FGF20	NM_019851	exon3	c.G616A	p.D206N	.	.	111	11	65	0	C|0.968;T|0.032	522
FGGY	55277	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	59978048	59978048	+	Missense_Mutation	SNP	C	C	G	rs11207463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FGGY	NM_001113411	exon7	c.C736G	p.L246V	.	.	162	17	46	0	C|0.985;G|0.015	69
FGGY	55277	ucsc.edu;bcgsc.ca	37	1	59787350	59787350	+	Missense_Mutation	SNP	T	T	G	rs835409	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FGGY	NM_001113411	exon2	c.T129G	p.N43K	.	.	133	15	59	0	T|0.565;G|0.435	69
FGL1	2267	bcgsc.ca	37	8	17731961	17731961	+	Missense_Mutation	SNP	G	G	A	rs2653406	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FGL1	NM_201553	exon5	c.C314T	p.P105L	.	.	195	6	93	0	G|0.861;A|0.139	90
FGL2	10875	bcgsc.ca	37	7	76829000	76829000	+	Silent	SNP	A	A	G	rs3093274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FGL2	NM_006682	exon1	c.T111C	p.D37D	.	.	122	9	60	0	A|0.943;G|0.057	92
FHAD1	114827	bcgsc.ca	37	1	15708540	15708540	+	Missense_Mutation	SNP	A	A	G	rs1010294	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHAD1	NM_052929	exon30	c.A3973G	p.I1325V	.	.	221	9	100	0	T|0.261;G|0.242	69
FHL5	9457	bcgsc.ca	37	6	97058553	97058553	+	Missense_Mutation	SNP	A	A	G	rs2273621	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHL5	NM_020482	exon6	c.A610G	p.R204G	.	.	326	20	144	1	A|0.603;G|0.397	92
FHL5	9457	bcgsc.ca	37	6	97058567	97058567	+	Silent	SNP	A	A	G	rs2273622	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHL5	NM_020482	exon6	c.A624G	p.P208P	.	.	297	15	130	2	A|0.841;G|0.159	92
FHL5	9457	bcgsc.ca	37	6	97063522	97063522	+	Missense_Mutation	SNP	C	C	G	rs9373985	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHL5	NM_020482	exon7	c.C729G	p.S243R	.	.	177	7	59	0	C|0.612;G|0.388	92
FHL5	9457	bcgsc.ca	37	6	97063555	97063555	+	Silent	SNP	A	A	G	rs9398148	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHL5	NM_020482	exon7	c.A762G	p.K254K	.	.	165	7	51	0	A|0.613;G|0.387	92
FHOD1	29109	bcgsc.ca	37	16	67265360	67265360	+	Silent	SNP	C	C	A	rs6499118	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHOD1	NM_013241	exon16	c.G2478T	p.A826A	.	.	110	5	48	0	C|0.755;A|0.245	221
FHOD3	80206	bcgsc.ca	37	18	34320630	34320630	+	Silent	SNP	G	G	A	rs9304162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHOD3	NM_025135	exon18	c.G3063A	p.T1021T	.	.	176	11	97	0	G|0.928;A|0.072	139
FHOD3	80206	bcgsc.ca	37	18	34326982	34326982	+	Silent	SNP	G	G	A	rs16968267	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FHOD3	NM_025135	exon21	c.G3591A	p.K1197K	.	.	285	8	133	0	G|0.981;A|0.019	139
FICD	11153	bcgsc.ca	37	12	108910756	108910756	+	Missense_Mutation	SNP	C	C	T	rs76973043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FICD	NM_007076	exon2	c.C7T	p.L3F	.	.	103	7	28	0	C|0.982;T|0.018	68
FKBP15	23307	bcgsc.ca	37	9	115930836	115930836	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FKBP15	NM_015258	exon27	c.T3486C	p.S1162S	.	.	151	5	43	0	.	25
FKBP15	23307	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	115956400	115956400	+	Missense_Mutation	SNP	C	C	T	rs62636616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FKBP15	NM_015258	exon10	c.G914A	p.R305H	.	.	105	10	59	0	C|0.990;T|0.010	25
FKBP15	23307	ucsc.edu;bcgsc.ca	37	9	115931784	115931784	+	Missense_Mutation	SNP	C	C	A	rs61748833	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FKBP15	NM_015258	exon26	c.G3205T	p.A1069S	.	.	199	24	81	1	C|0.989;A|0.011	25
FLG	2312	bcgsc.ca	37	1	152277575	152277575	+	Missense_Mutation	SNP	C	C	T	rs79771385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.G9787A	p.G3263S	.	.	762	27	223	0	C|0.959;T|0.041	106
FLG	2312	bcgsc.ca	37	1	152281172	152281172	+	Missense_Mutation	SNP	T	T	G	rs74129455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.A6190C	p.K2064Q	.	.	635	18	194	1	T|0.500;G|0.500	106
FLG	2312	bcgsc.ca	37	1	152281935	152281935	+	Silent	SNP	A	A	G	rs3120646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.T5427C	p.G1809G	.	.	726	25	192	0	A|0.882;G|0.118	106
FLG	2312	bcgsc.ca	37	1	152282899	152282899	+	Missense_Mutation	SNP	G	G	T	rs3120648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.C4463A	p.T1488N	.	.	629	26	195	0	G|0.915;T|0.085	106
FLG	2312	bcgsc.ca	37	1	152283203	152283203	+	Missense_Mutation	SNP	G	G	A	rs73005479	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.C4159T	p.H1387Y	.	.	298	15	104	0	G|0.988;A|0.012	106
FLG	2312	bcgsc.ca	37	1	152283811	152283811	+	Missense_Mutation	SNP	G	G	A	rs3120649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.C3551T	p.S1184L	.	.	482	25	136	1	G|0.881;A|0.119	106
FLG	2312	bcgsc.ca	37	1	152285188	152285188	+	Missense_Mutation	SNP	G	G	A	rs80233522		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.C2174T	p.T725I	.	.	275	14	107	1	.	106
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152279962	152279962	+	Missense_Mutation	SNP	C	C	T	rs146768750		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG	NM_002016	exon3	c.G7400A	p.G2467E	.	.	524	23	144	0	C|1.000;T|0.000	106
FLG2	388698	bcgsc.ca	37	1	152324397	152324397	+	Silent	SNP	G	G	A	rs79983774	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG2	NM_001014342	exon3	c.C5865T	p.H1955H	.	.	686	23	239	0	G|0.940;A|0.060	151
FLG2	388698	bcgsc.ca	37	1	152325456	152325456	+	Silent	SNP	G	G	A	rs73007787	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG2	NM_001014342	exon3	c.C4806T	p.A1602A	.	.	753	32	191	0	G|0.940;A|0.060	151
FLG2	388698	bcgsc.ca	37	1	152326516	152326516	+	Missense_Mutation	SNP	T	T	C	rs16833974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG2	NM_001014342	exon3	c.A3746G	p.H1249R	.	.	704	34	203	0	T|0.932;C|0.068	151
FLG2	388698	bcgsc.ca	37	1	152329758	152329758	+	Missense_Mutation	SNP	T	T	A	rs61749580	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLG2	NM_001014342	exon3	c.A504T	p.L168F	.	.	222	8	121	0	T|0.934;A|0.066	151
FLJ45079	0	bcgsc.ca	37	17	75878046	75878046	+	RNA	SNP	T	T	G	rs148379576	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	232	11	98	0	T|0.993;G|0.007	.
FLNC	2318	bcgsc.ca	37	7	128470838	128470838	+	Silent	SNP	C	C	T	rs3734972	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLNC	NM_001127487	exon1	c.C147T	p.H49H	.	.	331	22	91	0	C|0.885;T|0.115	141
FLNC	2318	bcgsc.ca	37	7	128477547	128477547	+	Silent	SNP	T	T	C	rs2291561	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLNC	NM_001127487	exon4	c.T795C	p.G265G	.	.	85	5	39	0	T|0.881;C|0.119	141
FLNC	2318	bcgsc.ca	37	7	128484816	128484816	+	Silent	SNP	A	A	G	rs3734973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLNC	NM_001127487	exon21	c.A3297G	p.V1099V	.	.	78	6	34	0	A|0.663;G|0.337	141
FLRT3	23767	bcgsc.ca	37	20	14306773	14306773	+	Missense_Mutation	SNP	T	T	G	rs35253731	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLRT3	NM_013281	exon2	c.A1380C	p.E460D	.	.	238	7	91	0	T|0.945;G|0.055	91
FLRT3	23767	bcgsc.ca	37	20	14306896	14306896	+	Silent	SNP	G	G	A	rs6042672	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLRT3	NM_013281	exon2	c.C1257T	p.T419T	.	.	173	17	100	0	G|0.677;A|0.323	91
FLT3	2322	bcgsc.ca	37	13	28608473	28608473	+	Missense_Mutation	SNP	C	C	T	rs35958982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	FLT3,NS,haematopoietic_neoplasm,0	FLT3	NM_004119	exon13	c.G1669A	p.V557I	.	.	247	12	86	0	C|0.946;T|0.054	42117
FLT4	2324	bcgsc.ca	37	5	180057293	180057293	+	Missense_Mutation	SNP	T	T	C	rs34221241	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FLT4	NM_182925	exon4	c.A445G	p.N149D	.	.	252	9	68	1	T|0.929;C|0.071	1490
FMN2	56776	bcgsc.ca	37	1	240341268	240341268	+	Silent	SNP	A	A	G	rs3765588	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMN2	NM_020066	exon3	c.A1830G	p.S610S	.	.	143	5	65	0	A|0.768;G|0.232	145
FMNL1	752	bcgsc.ca	37	17	43319770	43319770	+	Silent	SNP	C	C	T	rs1801353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMNL1	NM_005892	exon16	c.C1948T	p.L650L	.	.	272	11	56	0	C|0.645;T|0.355	91
FMO1	2326	bcgsc.ca	37	1	171251196	171251196	+	Missense_Mutation	SNP	A	A	G	rs16864314	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMO1	NM_002021	exon7	c.A907G	p.I303V	.	.	82	4	55	0	A|0.954;G|0.046	515
FMO2	2327	bcgsc.ca	37	1	171174691	171174691	+	Silent	SNP	G	G	A	rs7536646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMO2	NM_001460	exon7	c.G1101A	p.A367A	.	.	96	8	54	0	G|0.951;A|0.049	91
FMO2	2327	bcgsc.ca	37	1	171174762	171174762	+	Missense_Mutation	SNP	G	G	C	rs28369899	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMO2	NM_001460	exon7	c.G1172C	p.R391T	.	.	73	6	35	0	G|0.994;C|0.006	91
FMO2	2327	bcgsc.ca	37	1	171176879	171176879	+	Silent	SNP	G	G	A	rs6671692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMO2	NM_001460	exon8	c.G1206A	p.E402E	.	.	357	11	123	0	G|0.953;A|0.047	91
FMO4	2329	bcgsc.ca	37	1	171303690	171303690	+	Missense_Mutation	SNP	T	T	C	rs1042767	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FMO4	NM_002022	exon8	c.T968C	p.V323A	.	.	234	17	83	0	T|0.924;C|0.076	537
FN3K	64122	bcgsc.ca	37	17	80706766	80706766	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FN3K	NM_022158	exon5	c.C504T	p.F168F	.	.	130	21	35	0	.	90
FNDC1	84624	bcgsc.ca	37	6	159667961	159667961	+	Silent	SNP	T	T	G	rs294911	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FNDC1	NM_032532	exon15	c.T4650G	p.T1550T	.	.	130	7	62	0	T|0.835;G|0.165	138
FNDC1	84624	bcgsc.ca	37	6	159672455	159672455	+	Silent	SNP	C	C	T	rs294899	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FNDC1	NM_032532	exon17	c.C4956T	p.D1652D	.	.	171	13	44	0	C|0.523;T|0.477	138
FNDC3B	64778	bcgsc.ca	37	3	171969077	171969077	+	Missense_Mutation	SNP	C	C	G	rs7652177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FNDC3B	NM_001135095	exon6	c.C536G	p.T179S	.	.	134	8	64	0	C|0.384;G|0.616	155
FNDC3B	64778	ucsc.edu;bcgsc.ca	37	3	171969312	171969312	+	Silent	SNP	G	G	C	rs34553291	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FNDC3B	NM_001135095	exon6	c.G771C	p.S257S	.	.	37	5	23	0	G|0.674;C|0.326	155
FNDC7	163479	bcgsc.ca	37	1	109268441	109268441	+	Missense_Mutation	SNP	G	G	A	rs11582005	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FNDC7	NM_001144937	exon6	c.G926A	p.S309N	.	.	214	10	85	0	G|0.816;A|0.184	92
FNIP1	96459	hgsc.bcm.edu;bcgsc.ca	37	5	131054750	131054750	+	Silent	SNP	G	G	A	rs61738669	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FNIP1	NM_001008738	exon5	c.C459T	p.S153S	.	.	199	8	99	0	G|0.984;A|0.016	92
FOXA3	3171	bcgsc.ca	37	19	46375779	46375779	+	Silent	SNP	C	C	T	rs16980091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FOXA3	NM_004497	exon2	c.C516T	p.N172N	.	.	83	5	51	0	C|0.807;T|0.193	226
FOXI1	2299	bcgsc.ca	37	5	169533240	169533240	+	Silent	SNP	G	G	A	rs2277944	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FOXI1	NM_012188	exon1	c.G279A	p.R93R	.	.	96	9	45	0	G|0.676;A|0.324	229
FOXO1	2308	bcgsc.ca	37	13	41134629	41134629	+	Silent	SNP	G	G	A	rs139436481	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FOXO1	NM_002015	exon2	c.C999T	p.T333T	.	.	209	6	86	1	G|0.996;A|0.004	1295
FOXP1	27086	bcgsc.ca	37	3	71019901	71019901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FOXP1	NM_001244810	exon19	c.A1756G	p.N586D	.	.	184	7	75	0	.	415
FOXRED2	80020	bcgsc.ca	37	22	36900271	36900271	+	Missense_Mutation	SNP	T	T	C	rs2277841	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FOXRED2	NM_001102371	exon4	c.A923G	p.N308S	.	.	199	11	73	0	T|0.245;C|0.755	92
FPGS	2356	bcgsc.ca	37	9	130569288	130569288	+	Silent	SNP	C	C	G	rs76706331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FPGS	NM_004957	exon5	c.C423G	p.R141R	.	.	86	8	32	0	C|0.996;G|0.004	90
FRA10AC1	118924	bcgsc.ca	37	10	95459817	95459817	+	Missense_Mutation	SNP	C	C	T	rs726817	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRA10AC1	NM_145246	exon2	c.G47A	p.R16H	.	.	153	5	61	0	C|0.336;N|0.000	90
FRAS1	80144	bcgsc.ca	37	4	78987157	78987157	+	Missense_Mutation	SNP	A	A	G	rs4859905	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRAS1	NM_001166133	exon2	c.A95G	p.D32G	.	.	1050	44	333	0	A|0.473;G|0.527	68
FRAS1	80144	bcgsc.ca	37	4	79236838	79236838	+	Missense_Mutation	SNP	T	T	C	rs35030041	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRAS1	NM_001166133	exon16	c.T1769C	p.M590T	.	.	147	6	47	0	T|0.990;C|0.010	68
FRAS1	80144	bcgsc.ca	37	4	79432455	79432455	+	Silent	SNP	A	A	C	rs3749488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRAS1	NM_025074	exon64	c.A9808C	p.R3270R	.	.	458	26	146	0	A|0.629;C|0.371	68
FREM1	158326	bcgsc.ca	37	9	14784389	14784389	+	Missense_Mutation	SNP	G	G	A	rs41265306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FREM1	NM_144966	exon25	c.C4421T	p.T1474I	.	.	148	6	43	0	G|0.928;A|0.072	138
FREM1	158326	bcgsc.ca	37	9	14797516	14797516	+	Missense_Mutation	SNP	A	A	T	rs7025814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FREM1	NM_144966	exon22	c.T3819A	p.D1273E	.	.	155	6	52	0	A|0.936;T|0.064	138
FREM1	158326	hgsc.bcm.edu;bcgsc.ca	37	9	14801713	14801713	+	Missense_Mutation	SNP	G	G	A	rs76714828		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FREM1	NM_144966	exon21	c.C3631T	p.P1211S	.	.	332	21	177	0	G|0.999;A|0.001	138
FREM2	341640	bcgsc.ca	37	13	39264690	39264690	+	Missense_Mutation	SNP	T	T	C	rs2496425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FREM2	NM_207361	exon1	c.T3209C	p.F1070S	.	.	123	8	50	0	T|0.546;C|0.454	100
FREM2	341640	bcgsc.ca	37	13	39422767	39422767	+	Silent	SNP	C	C	T	rs116383837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FREM2	NM_207361	exon8	c.C6339T	p.P2113P	.	.	105	7	40	0	C|0.989;T|0.011	100
FRG1	2483	bcgsc.ca	37	4	190862182	190862182	+	Silent	SNP	C	C	T	rs2411530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRG1	NM_004477	exon1	c.C18T	p.Y6Y	.	.	161	8	43	0	C|0.506;T|0.494	90
FRMD4A	55691	bcgsc.ca	37	10	13708245	13708245	+	Silent	SNP	G	G	A	rs7906126	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRMD4A	NM_018027	exon18	c.C1455T	p.D485D	.	.	477	14	186	0	G|0.969;A|0.031	229
FRMD5	84978	bcgsc.ca	37	15	44198049	44198049	+	Silent	SNP	A	A	G	rs2306674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRMD5	NM_032892	exon6	c.T528C	p.A176A	.	.	243	12	71	0	A|0.815;G|0.185	91
FRMPD1	22844	bcgsc.ca	37	9	37707541	37707541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRMPD1	NM_014907	exon3	c.T230C	p.L77P	.	.	60	4	47	0	.	159
FRMPD2	143162	bcgsc.ca	37	10	49457202	49457202	+	Silent	SNP	A	A	G	rs440943	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRMPD2	NM_001018071	exon3	c.T171C	p.V57V	.	.	103	6	45	0	A|0.892;G|0.108	153
FRMPD4	9758	bcgsc.ca	37	X	12734585	12734585	+	Silent	SNP	T	T	C	rs67823099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRMPD4	NM_014728	exon15	c.T2007C	p.L669L	.	.	183	13	60	0	T|0.898;C|0.102	263
FRRS1	391059	bcgsc.ca	37	1	100174670	100174670	+	Missense_Mutation	SNP	C	C	T	rs12145706	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRRS1	NM_001013660	exon17	c.G1665A	p.M555I	.	.	122	7	47	0	C|0.857;T|0.143	91
FRY	10129	bcgsc.ca	37	13	32747654	32747654	+	Silent	SNP	C	C	A	rs17077179	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRY	NM_023037	exon19	c.C2302A	p.R768R	.	.	330	8	144	0	C|0.893;A|0.107	142
FRZB	2487	bcgsc.ca	37	2	183699584	183699584	+	Missense_Mutation	SNP	G	G	C	rs7775	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRZB	NM_001463	exon6	c.C970G	p.R324G	.	.	343	15	196	0	G|0.701;C|0.299	948
FRZB	2487	bcgsc.ca	37	2	183703336	183703336	+	Missense_Mutation	SNP	G	G	A	rs288326	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FRZB	NM_001463	exon4	c.C598T	p.R200W	.	.	202	8	82	0	G|0.945;A|0.055	948
FSD2	123722	bcgsc.ca	37	15	83428192	83428192	+	Missense_Mutation	SNP	C	C	T	rs1108134	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FSD2	NM_001007122	exon13	c.G2158A	p.E720K	.	.	165	8	63	0	C|0.869;T|0.131	90
FSIP1	161835	hgsc.bcm.edu;bcgsc.ca	37	15	40062748	40062748	+	Missense_Mutation	SNP	T	T	C	rs1166719	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FSIP1	NM_152597	exon3	c.A190G	p.N64D	.	.	386	20	175	0	T|0.991;C|0.009	517
FSTL5	56884	bcgsc.ca	37	4	162841653	162841653	+	Silent	SNP	G	G	A	rs359502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FSTL5	NM_020116	exon4	c.C312T	p.D104D	.	.	296	9	120	0	G|0.914;A|0.086	158
FTCD	10841	bcgsc.ca	37	21	47574140	47574140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FTCD	NM_206965	exon2	c.C161T	p.P54L	.	.	90	8	38	0	.	92
FTHL17	53940	ucsc.edu;bcgsc.ca	37	X	31089930	31089930	+	Silent	SNP	C	C	T	rs438870	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FTHL17	NM_031894	exon1	c.G141A	p.V47V	.	.	97	10	52	0	C|0.735;0|0.004	130
FTX	100302692	bcgsc.ca	37	X	73350854	73350854	+	RNA	SNP	T	T	C	rs55994954		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	143	6	81	0	T|0.958;C|0.042	.
FTX	100302692	bcgsc.ca	37	X	73351022	73351022	+	RNA	SNP	A	A	C	rs12015021	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	247	13	70	0	A|0.933;C|0.067	.
FUBP1	8880	bcgsc.ca	37	1	78428596	78428596	+	Silent	SNP	G	G	A	rs2228247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FUBP1	NM_003902	exon14	c.C1203T	p.S401S	.	.	283	11	99	0	G|0.962;A|0.038	227
FUT10	84750	bcgsc.ca	37	8	33246562	33246562	+	Silent	SNP	G	G	A	rs16880851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FUT10	NM_032664	exon4	c.C1131T	p.D377D	.	.	278	22	170	0	G|0.939;A|0.061	92
FUT3	2525	bcgsc.ca	37	19	5844343	5844343	+	Missense_Mutation	SNP	C	C	T	rs3745635	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FUT3	NM_001097640	exon3	c.G508A	p.G170S	.	.	195	14	106	0	C|0.901;T|0.099	90
FUT3	2525	bcgsc.ca	37	19	5844792	5844792	+	Missense_Mutation	SNP	A	A	C	rs28362459	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FUT3	NM_001097640	exon3	c.T59G	p.L20R	.	.	177	12	73	0	A|0.832;C|0.168	90
FUT6	2528	bcgsc.ca	37	19	5831840	5831840	+	Missense_Mutation	SNP	C	C	T	rs17855739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FUT6	NM_000150	exon3	c.G739A	p.E247K	.	.	419	14	191	1	C|0.878;T|0.122	90
FUT6	2528	bcgsc.ca	37	19	5832209	5832209	+	Missense_Mutation	SNP	G	G	A	rs778805	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FUT6	NM_000150	exon3	c.C370T	p.P124S	.	.	221	14	74	0	G|0.555;A|0.445	90
FXR2	9513	bcgsc.ca	37	17	7506257	7506257	+	Silent	SNP	G	G	C	rs16956829	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_004860	exon6	c.C513G	p.L171L	.	.	157	5	76	0	G|0.963;C|0.037	.
FYCO1	79443	bcgsc.ca	37	3	46003831	46003831	+	Missense_Mutation	SNP	T	T	C	rs139535132	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FYCO1	NM_024513	exon11	c.A3323G	p.K1108R	.	.	782	25	236	0	T|0.999;C|0.001	91
FYCO1	79443	bcgsc.ca	37	3	46008647	46008647	+	Missense_Mutation	SNP	G	G	T	rs36014492	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FYCO1	NM_024513	exon8	c.C2179A	p.H727N	.	.	141	7	48	1	G|0.982;T|0.018	91
FZD2	2535	bcgsc.ca	37	17	42635965	42635965	+	Silent	SNP	C	C	T	rs7218045	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FZD2	NM_001466	exon1	c.C909T	p.R303R	.	.	216	15	58	0	C|0.974;T|0.026	660
FZD6	8323	bcgsc.ca	37	8	104312341	104312341	+	Silent	SNP	A	A	G	rs3736047	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FZD6	NM_003506	exon2	c.A6G	p.E2E	.	.	551	21	185	2	A|0.569;G|0.431	658
FZD6	8323	bcgsc.ca	37	8	104337096	104337096	+	Silent	SNP	A	A	G	rs3808554	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FZD6	NM_003506	exon4	c.A762G	p.L254L	.	.	352	17	69	1	A|0.576;G|0.424	658
FZD6	8323	bcgsc.ca	37	8	104337367	104337367	+	Missense_Mutation	SNP	A	A	C	rs3808553	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FZD6	NM_003506	exon4	c.A1033C	p.M345L	.	.	708	31	114	1	A|0.571;C|0.429	658
FZD9	8326	bcgsc.ca	37	7	72850080	72850080	+	Silent	SNP	G	G	A	rs144706232	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	FZD9	NM_003508	exon1	c.G1743A	p.T581T	.	.	212	11	93	1	G|0.999;A|0.001	1082
G6PC2	57818	bcgsc.ca	37	2	169764176	169764176	+	Missense_Mutation	SNP	G	G	C	rs492594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	G6PC2	NM_021176	exon5	c.G655C	p.V219L	.	.	657	22	215	0	G|0.559;C|0.441	91
GAB2	9846	bcgsc.ca	37	11	77936166	77936166	+	Silent	SNP	A	A	G	rs1385600	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAB2	NM_080491	exon5	c.T1290C	p.V430V	.	.	98	6	48	0	A|0.691;G|0.309	663
GAB2	9846	ucsc.edu;bcgsc.ca	37	11	77937800	77937800	+	Silent	SNP	G	G	A	rs2248407	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAB2	NM_080491	exon4	c.C918T	p.F306F	.	.	176	23	84	0	G|0.738;A|0.262	663
GAB4	128954	bcgsc.ca	37	22	17469026	17469026	+	Silent	SNP	G	G	A	rs5992604	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAB4	NM_001037814	exon3	c.C510T	p.H170H	.	.	133	6	35	0	G|0.617;A|0.383	91
GABRA5	2558	bcgsc.ca	37	15	27182357	27182357	+	Silent	SNP	T	T	C	rs140682	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GABRA5	NM_001165037	exon8	c.T606C	p.V202V	.	.	110	6	35	0	T|0.357;C|0.643	91
GABRG2	2566	bcgsc.ca	37	5	161528280	161528280	+	Silent	SNP	C	C	T	rs211037	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GABRG2	NM_198904	exon5	c.C588T	p.N196N	.	.	234	8	81	0	C|0.648;T|0.352	95
GABRP	2568	bcgsc.ca	37	5	170224530	170224530	+	Silent	SNP	A	A	T	rs975061	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GABRP	NM_014211	exon6	c.A519T	p.T173T	.	.	233	8	95	0	A|0.958;T|0.042	153
GABRP	2568	bcgsc.ca	37	5	170239112	170239112	+	Missense_Mutation	SNP	C	C	A	rs1063310	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GABRP	NM_014211	exon10	c.C1173A	p.F391L	.	.	159	7	79	0	C|0.739;A|0.261	153
GABRR2	2570	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89967498	89967498	+	Missense_Mutation	SNP	G	G	A	rs282129	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GABRR2	NM_002043	exon9	c.C1289T	p.T430M	.	.	264	33	114	0	G|0.529;T|0.065	68
GALK2	2585	bcgsc.ca	37	15	49620200	49620200	+	Silent	SNP	C	C	T	rs1055254	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALK2	NM_002044	exon10	c.C1221T	p.C407C	.	.	118	8	43	0	C|0.783;T|0.217	160
GALM	130589	bcgsc.ca	37	2	38916970	38916970	+	Missense_Mutation	SNP	A	A	T	rs6741892	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALM	NM_138801	exon4	c.A568T	p.N190Y	.	.	310	8	117	0	A|0.848;T|0.152	90
GALNS	2588	bcgsc.ca	37	16	88902183	88902183	+	Silent	SNP	G	G	A	rs1064315	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNS	NM_000512	exon7	c.C708T	p.H236H	.	.	117	8	34	0	G|0.715;A|0.285	153
GALNT11	63917	hgsc.bcm.edu;bcgsc.ca	37	7	151800228	151800228	+	Missense_Mutation	SNP	C	C	T	rs6464201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNT11	NM_022087	exon4	c.C451T	p.P151S	.	.	287	16	106	0	C|0.961;T|0.039	90
GALNT13	114805	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	155158038	155158038	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNT13	NM_052917	exon9	c.C1092T	p.N364N	.	.	600	26	191	0	.	95
GALNT4	8693	hgsc.bcm.edu;bcgsc.ca	37	12	89916665	89916665	+	Silent	SNP	C	C	T	rs7299750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_003774	exon1	c.G1662A	p.P554P	.	.	279	14	135	0	C|0.988;T|0.012	.
GALNT5	11227	bcgsc.ca	37	2	158115129	158115129	+	Missense_Mutation	SNP	A	A	T	rs61748237	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNT5	NM_014568	exon1	c.A535T	p.T179S	.	.	121	6	52	0	A|0.905;T|0.095	290
GALNT7	51809	bcgsc.ca	37	4	174090004	174090004	+	Silent	SNP	G	G	A	rs3733477	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNT7	NM_017423	exon1	c.G18A	p.G6G	.	.	124	6	37	0	T|0.183;G|0.256;C|0.097;A|0.463	90
GALNT8	26290	bcgsc.ca	37	12	4830000	4830000	+	Missense_Mutation	SNP	T	T	G	rs10849133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNT8	NM_017417	exon1	c.T157G	p.Y53D	.	.	169	8	71	1	G|0.410;N|0.000	230
GALNT9	50614	bcgsc.ca	37	12	132681730	132681730	+	Silent	SNP	A	A	G	rs34329783	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALNT9	NM_001122636	exon11	c.T1734C	p.F578F	.	.	164	7	34	0	A|0.971;G|0.029	90
GALR1	2587	bcgsc.ca	37	18	74962645	74962645	+	Silent	SNP	T	T	C	rs5374	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GALR1	NM_001480	exon1	c.T141C	p.G47G	.	.	118	10	47	1	T|0.442;C|0.558	522
GANC	2595	bcgsc.ca	37	15	42643529	42643529	+	Missense_Mutation	SNP	T	T	C	rs7181742	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GANC	NM_198141	exon23	c.T2534C	p.F845S	.	.	148	7	55	0	T|0.702;C|0.298	92
GAPVD1	26130	bcgsc.ca	37	9	128067419	128067419	+	Silent	SNP	G	G	A	rs62637640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAPVD1	NM_015635	exon4	c.G1107A	p.K369K	.	.	116	11	32	0	G|0.951;A|0.049	93
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34072245	34072245	+	Silent	SNP	C	C	T	rs114664198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAS2L2	NM_139285	exon6	c.G2271A	p.K757K	.	.	229	12	66	0	C|0.991;T|0.009	227
GAS6	2621	bcgsc.ca	37	13	114530114	114530114	+	Silent	SNP	G	G	A	rs1803628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAS6	NM_000820	exon12	c.C1332T	p.C444C	.	.	172	10	44	0	T|0.045;G|0.639;C|0.211;A|0.105	650
GAS7	8522	bcgsc.ca	37	17	9846521	9846521	+	Silent	SNP	G	G	C	rs17339499	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GAS7	NM_201433	exon7	c.C648G	p.T216T	.	.	117	8	37	0	G|0.620;C|0.380	1083
GATA4	2626	bcgsc.ca	37	8	11614502	11614502	+	Silent	SNP	C	C	T	rs3729855	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GATA4	NM_002052	exon6	c.C1056T	p.N352N	.	.	143	10	56	0	C|0.957;T|0.043	90
GATM	2628	bcgsc.ca	37	15	45661678	45661678	+	Missense_Mutation	SNP	T	T	A	rs1288775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GATM	NM_001482	exon3	c.A330T	p.Q110H	.	.	422	25	125	0	T|0.499;A|0.501	90
GATSL2	729438	bcgsc.ca	37	7	74824226	74824226	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145064	exon2	c.G141A	p.T47T	.	.	1077	42	347	2	.	.
GBAP1	2630	bcgsc.ca	37	1	155186729	155186729	+	RNA	SNP	T	T	C	rs28445596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	236	10	88	1	T|0.383;C|0.617	.
GBAP1	2630	bcgsc.ca	37	1	155186742	155186742	+	RNA	SNP	G	G	A	rs1057941	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	231	10	83	0	G|0.551;A|0.449	.
GBP1	2633	bcgsc.ca	37	1	89521841	89521841	+	Missense_Mutation	SNP	G	G	C	rs61746650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP1	NM_002053	exon8	c.C1226G	p.A409G	.	.	645	35	275	0	G|0.208;C|0.792	92
GBP2	2634	hgsc.bcm.edu;bcgsc.ca	37	1	89575396	89575396	+	Missense_Mutation	SNP	C	C	T	rs146553595		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP2	NM_004120	exon10	c.G1623A	p.M541I	.	.	370	19	125	0	C|1.000;T|0.000	91
GBP3	2635	bcgsc.ca	37	1	89476602	89476602	+	Silent	SNP	T	T	C	rs149016164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP3	NM_018284	exon8	c.A1347G	p.P449P	.	.	391	12	184	1	T|0.999;C|0.001	92
GBP6	163351	bcgsc.ca	37	1	89847372	89847372	+	Missense_Mutation	SNP	G	G	T	rs4658359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP6	NM_198460	exon7	c.G991T	p.A331S	.	.	154	9	75	0	G|0.211;T|0.789	92
GBP6	163351	bcgsc.ca	37	1	89847444	89847444	+	Missense_Mutation	SNP	A	A	G	rs4658146	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP6	NM_198460	exon7	c.A1063G	p.M355V	.	.	154	9	68	0	A|0.210;G|0.790	92
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89835220	89835220	+	Silent	SNP	C	C	A	rs114110284	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP6	NM_198460	exon3	c.C306A	p.G102G	.	.	137	9	66	0	C|0.980;A|0.020	92
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89849256	89849256	+	Missense_Mutation	SNP	G	G	A	rs116173091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GBP6	NM_198460	exon9	c.G1411A	p.E471K	.	.	421	24	132	0	G|0.986;A|0.014	92
GC	2638	bcgsc.ca	37	4	72618334	72618334	+	Missense_Mutation	SNP	A	A	C	rs7041	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GC	NM_001204307	exon12	c.T1353G	p.D451E	.	.	227	8	89	0	A|0.597;C|0.403	93
GCC1	79571	bcgsc.ca	37	7	127224872	127224872	+	Missense_Mutation	SNP	G	G	A	rs35322201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCC1	NM_024523	exon1	c.C365T	p.A122V	.	.	273	9	66	0	G|0.981;A|0.019	92
GCDH	2639	bcgsc.ca	37	19	13007025	13007025	+	Nonsense_Mutation	SNP	G	G	A	rs142806397	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCDH	NM_013976	exon8	c.T642A	p.C214X	.	.	210	13	75	0	G|0.999;A|0.001	90
GCFC2	6936	bcgsc.ca	37	2	75907351	75907351	+	Missense_Mutation	SNP	T	T	C	rs6722682	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_003203	exon12	c.A1780G	p.T594A	.	.	196	9	71	0	T|0.774;C|0.226	.
GCFC2	6936	bcgsc.ca	37	2	75915035	75915035	+	Silent	SNP	C	C	T	rs1803196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_003203	exon11	c.G1608A	p.V536V	.	.	267	19	160	0	C|0.501;T|0.499	.
GCFC2	6936	bcgsc.ca	37	2	75923413	75923413	+	Missense_Mutation	SNP	T	T	C	rs7560262	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_003203	exon5	c.A746G	p.N249S	.	.	418	25	151	1	T|0.465;C|0.535	.
GCKR	2646	bcgsc.ca	37	2	27730940	27730940	+	Missense_Mutation	SNP	T	T	C	rs1260326	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCKR	NM_001486	exon15	c.T1337C	p.L446P	.	.	151	12	64	0	A|0.003;C|0.649	92
GCN1L1	10985	bcgsc.ca	37	12	120589091	120589091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCN1L1	NM_006836	exon34	c.C4167G	p.D1389E	.	.	97	6	34	0	.	94
GCN1L1	10985	bcgsc.ca	37	12	120608031	120608031	+	Silent	SNP	A	A	G	rs2286050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCN1L1	NM_006836	exon15	c.T1461C	p.T487T	.	.	153	15	56	0	A|0.709;G|0.291	94
GCN1L1	10985	ucsc.edu;bcgsc.ca	37	12	120589064	120589064	+	Silent	SNP	G	G	C	rs2286045	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCN1L1	NM_006836	exon34	c.C4194G	p.A1398A	.	.	102	10	30	0	G|0.685;C|0.315	94
GCNT4	51301	bcgsc.ca	37	5	74324548	74324548	+	Missense_Mutation	SNP	G	G	A	rs3811987	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCNT4	NM_016591	exon1	c.C1315T	p.P439S	.	.	249	13	79	0	G|0.584;A|0.416	93
GCNT4	51301	bcgsc.ca	37	5	74324902	74324902	+	Missense_Mutation	SNP	C	C	T	rs4704166	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GCNT4	NM_016591	exon1	c.G961A	p.V321I	.	.	83	7	34	0	C|0.657;G|0.000;T|0.343	93
GDF5	8200	bcgsc.ca	37	20	34022387	34022387	+	Missense_Mutation	SNP	A	A	C	rs224331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GDF5	NM_000557	exon2	c.T826G	p.S276A	.	.	102	6	55	0	A|0.641;C|0.359	226
GDF5	8200	ucsc.edu;bcgsc.ca	37	20	34022196	34022196	+	Silent	SNP	C	C	T	rs224330	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GDF5	NM_000557	exon2	c.G1017A	p.K339K	.	.	116	14	76	0	C|0.877;T|0.123	226
GDPD4	220032	bcgsc.ca	37	11	76979550	76979550	+	Missense_Mutation	SNP	T	T	C	rs2729772	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GDPD4	NM_182833	exon9	c.A659G	p.K220R	.	.	116	6	37	0	T|0.823;C|0.177	69
GEMIN4	50628	bcgsc.ca	37	17	649547	649547	+	Missense_Mutation	SNP	G	G	C	rs910925	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GEMIN4	NM_015721	exon2	c.C1736G	p.A579G	.	.	93	5	29	0	G|0.543;C|0.457	206
GEMIN4	50628	ucsc.edu	37	17	648498	648498	+	Missense_Mutation	SNP	C	C	T	rs2740349	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GEMIN4	NM_015721	exon2	c.G2785A	p.D929N	.	.	77	7	24	0	C|0.118;T|0.882	206
GEN1	348654	bcgsc.ca	37	2	17946243	17946243	+	Missense_Mutation	SNP	A	A	G	rs16981869	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GEN1	NM_182625	exon4	c.A428G	p.N143S	.	.	261	9	87	0	A|0.861;G|0.139	359
GET4	51608	bcgsc.ca	37	7	930608	930608	+	Silent	SNP	G	G	A	rs11543223	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GET4	NM_015949	exon5	c.G510A	p.A170A	.	.	400	12	120	0	G|0.921;A|0.079	90
GFM2	84340	bcgsc.ca	37	5	74021847	74021852	+	In_Frame_Del	DEL	ACTCAA	ACTCAA	-	rs5868753		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	ACTCAA	ACTCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GFM2	NM_032380	exon18	c.1826_1831del	p.609_611del	.	.	208	10	81	0	ACTCAA|0.250;-|0.750	90
GFM2	84340	bcgsc.ca	37	5	74037369	74037369	+	Silent	SNP	C	C	T	rs35565659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GFM2	NM_032380	exon11	c.G915A	p.L305L	.	.	431	20	202	0	C|0.976;T|0.024	90
GFRA1	2674	bcgsc.ca	37	10	118030627	118030627	+	Missense_Mutation	SNP	T	T	G	rs76531145	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GFRA1	NM_001145453	exon3	c.A41C	p.D14A	.	.	93	6	36	0	T|0.986;G|0.014	93
GHITM	27069	bcgsc.ca	37	10	85902479	85902479	+	Silent	SNP	A	A	T	rs146877821		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GHITM	NM_014394	exon3	c.A198T	p.A66A	.	.	115	7	50	0	A|0.995;T|0.005	90
GHR	2690	bcgsc.ca	37	5	42699970	42699970	+	Missense_Mutation	SNP	G	G	A	rs6413484	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GHR	NM_001242399	exon6	c.G505A	p.V169I	.	.	399	9	139	0	A|0.003;G|0.996;T|0.000	659
GHR	2690	bcgsc.ca	37	5	42719239	42719239	+	Missense_Mutation	SNP	A	A	C	rs6180	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GHR	NM_001242399	exon10	c.A1651C	p.I551L	.	.	274	17	152	0	A|0.548;C|0.448	659
GIF	2694	bcgsc.ca	37	11	59612859	59612859	+	Missense_Mutation	SNP	T	T	C	rs35211634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GIF	NM_005142	exon1	c.A68G	p.Q23R	.	.	78	4	32	0	T|0.902;C|0.098	92
GIMAP7	168537	bcgsc.ca	37	7	150217335	150217335	+	Silent	SNP	G	G	T	rs3735079	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GIMAP7	NM_153236	exon2	c.G273T	p.G91G	.	.	92	6	29	0	G|0.893;T|0.107	228
GIMAP8	155038	hgsc.bcm.edu;bcgsc.ca	37	7	150164189	150164189	+	Silent	SNP	C	C	A	rs143212982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GIMAP8	NM_175571	exon2	c.C403A	p.R135R	.	.	196	8	72	0	A|0.002;C|0.998;G|0.001	95
GJA1	2697	bcgsc.ca	37	6	121768710	121768710	+	Silent	SNP	G	G	A	rs57946868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GJA1	NM_000165	exon2	c.G717A	p.R239R	.	.	116	5	34	0	A|0.030;C|0.000;G|0.969	92
GJA9	81025	bcgsc.ca	37	1	39340504	39340504	+	Silent	SNP	T	T	G	rs41270783	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GJA9	NM_030772	exon2	c.A1267C	p.R423R	.	.	377	11	146	0	T|0.935;G|0.065	22
GJB3	2707	bcgsc.ca	37	1	35250840	35250840	+	Silent	SNP	G	G	A	rs61732640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GJB3	NM_001005752	exon2	c.G477A	p.P159P	.	.	262	13	114	0	G|0.969;A|0.031	90
GJB7	375519	bcgsc.ca	37	6	87994209	87994213	+	Frame_Shift_Del	DEL	AAAAC	AAAAC	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AAAAC	AAAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GJB7	NM_198568	exon3	c.418_422del	p.140_141del	.	.	156	6	90	0	.	90
GJD2	57369	bcgsc.ca	37	15	35045312	35045312	+	Silent	SNP	T	T	A	rs651724	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GJD2	NM_020660	exon2	c.A333T	p.T111T	.	.	261	14	75	0	T|0.369;A|0.631	90
GLB1L2	89944	ucsc.edu;bcgsc.ca	37	11	134244123	134244123	+	Silent	SNP	C	C	G	rs3741097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLB1L2	NM_138342	exon17	c.C1680G	p.T560T	.	.	236	23	78	0	C|0.688;G|0.312	25
GLDC	2731	bcgsc.ca	37	9	6606634	6606634	+	Missense_Mutation	SNP	C	C	T	rs28617412	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLDC	NM_000170	exon5	c.G671A	p.R224H	.	.	225	12	114	0	C|0.975;T|0.025	92
GLDC	2731	bcgsc.ca	37	9	6606639	6606639	+	Silent	SNP	A	A	G	rs12004164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLDC	NM_000170	exon5	c.T666C	p.D222D	.	.	224	12	111	0	A|0.971;G|0.029	92
GLDC	2731	bcgsc.ca	37	9	6606645	6606645	+	Silent	SNP	G	G	A	rs2228095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLDC	NM_000170	exon5	c.C660T	p.L220L	.	.	216	12	116	1	T|0.039;G|0.553;C|0.368;A|0.041	92
GLG1	2734	bcgsc.ca	37	16	74490556	74490556	+	Silent	SNP	G	G	A	rs9945	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLG1	NM_001145667	exon25	c.C3363T	p.Y1121Y	.	.	165	7	57	0	T|0.057;G|0.494;C|0.326;A|0.123	136
GLI1	2735	bcgsc.ca	37	12	57865821	57865821	+	Missense_Mutation	SNP	G	G	C	rs2228226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLI1	NM_005269	exon12	c.G3298C	p.E1100Q	.	.	104	6	35	0	G|0.340;C|0.660	722
GLIPR2	152007	bcgsc.ca	37	9	36147871	36147871	+	Silent	SNP	C	C	T	rs16932994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLIPR2	NM_022343	exon2	c.C102T	p.N34N	.	.	56	5	32	0	C|0.961;T|0.039	93
GLIS1	148979	hgsc.bcm.edu	37	1	53975643	53975644	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLIS1	NM_147193	exon8	c.1416_1417insC	p.P472fs	.	.	194	22	69	0	.	91
GLP1R	2740	bcgsc.ca	37	6	39025309	39025309	+	Silent	SNP	G	G	A	rs10305444	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLP1R	NM_002062	exon3	c.G237A	p.S79S	.	.	101	5	43	0	G|0.977;A|0.023	659
GLRA4	441509	bcgsc.ca	37	X	102978806	102978806	+	Silent	SNP	G	G	C	rs5945807	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLRA4	NM_001024452	exon5	c.C555G	p.T185T	.	.	355	28	120	0	0|0.009;C|0.169	108
GLT1D1	144423	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129360498	129360498	+	Silent	SNP	G	G	A	rs482401	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GLT1D1	NM_144669	exon2	c.G108A	p.K36K	.	.	279	28	86	0	G|0.706;A|0.294	90
GMPR	2766	bcgsc.ca	37	6	16290761	16290761	+	Missense_Mutation	SNP	T	T	A	rs1042391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GMPR	NM_006877	exon8	c.T766A	p.F256I	.	.	318	25	128	0	A|0.579;N|0.000	91
GNAS	2778	bcgsc.ca	37	20	57484241	57484241	+	Silent	SNP	C	C	T	rs8620	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNAS	NM_080425	exon7	c.C2484T	p.I828I	.	.	101	6	43	0	C|0.913;T|0.087	4767
GNB5	10681	bcgsc.ca	37	15	52418218	52418218	+	Silent	SNP	T	T	C	rs34059787	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNB5	NM_016194	exon11	c.A936G	p.A312A	.	.	237	15	62	0	T|0.948;C|0.052	227
GNL1	2794	ucsc.edu;bcgsc.ca	37	6	30521137	30521137	+	Silent	SNP	G	G	A	rs2074505	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNL1	NM_005275	exon6	c.C798T	p.D266D	.	.	183	20	100	0	G|0.335;A|0.665	93
GNL3	26354	bcgsc.ca	37	3	52727257	52727257	+	Missense_Mutation	SNP	G	G	A	rs2289247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNL3	NM_014366	exon11	c.G1099A	p.V367M	.	.	286	14	141	0	G|0.533;A|0.467	90
GNL3	26354	bcgsc.ca	37	3	52727511	52727511	+	Silent	SNP	C	C	T	rs1344932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNL3	NM_014366	exon12	c.C1275T	p.S425S	.	.	355	10	129	0	C|0.962;T|0.038	90
GNL3	26354	bcgsc.ca	37	3	52727736	52727736	+	Silent	SNP	A	A	G	rs4532127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNL3	NM_014366	exon13	c.A1413G	p.E471E	.	.	269	9	148	0	A|0.878;G|0.122	90
GNPDA1	10007	bcgsc.ca	37	5	141391532	141391532	+	Silent	SNP	G	G	A	rs164080	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNPDA1	NM_005471	exon2	c.C69T	p.R23R	.	.	254	14	68	0	G|0.454;A|0.546	90
GNPTAB	79158	bcgsc.ca	37	12	102158763	102158763	+	Silent	SNP	T	T	C	rs10778148	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GNPTAB	NM_024312	exon13	c.A1932G	p.T644T	.	.	546	40	206	2	T|0.398;C|0.602	92
GOLGA4	2803	bcgsc.ca	37	3	37363353	37363353	+	Missense_Mutation	SNP	G	G	T	rs77527284	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLGA4	NM_001172713	exon14	c.G1743T	p.Q581H	.	.	490	20	249	0	G|0.963;T|0.037	93
GOLGA4	2803	bcgsc.ca	37	3	37368758	37368758	+	Missense_Mutation	SNP	T	T	C	rs78214260	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLGA4	NM_001172713	exon15	c.T5447C	p.I1816T	.	.	216	7	147	0	T|0.962;C|0.038	93
GOLGA6L1	283767	bcgsc.ca	37	15	22743086	22743086	+	Missense_Mutation	SNP	C	C	T	rs201721928		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001001413	exon8	c.C1471T	p.R491W	.	.	413	53	114	1	.	.
GOLGB1	2804	bcgsc.ca	37	3	121412892	121412892	+	Silent	SNP	A	A	G	rs11915822	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLGB1	NM_001256486	exon13	c.T6478C	p.L2160L	.	.	407	14	162	0	A|0.879;G|0.121	161
GOLGB1	2804	bcgsc.ca	37	3	121414217	121414217	+	Missense_Mutation	SNP	C	C	A	rs35674179	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLGB1	NM_001256486	exon13	c.G5153T	p.C1718F	.	.	268	7	110	0	C|0.878;A|0.122	161
GOLGB1	2804	bcgsc.ca	37	3	121416583	121416583	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLGB1	NM_001256486	exon13	c.T2787C	p.L929L	.	.	330	8	122	0	.	161
GOLM1	51280	bcgsc.ca	37	9	88651370	88651370	+	Missense_Mutation	SNP	T	T	C	rs2297002	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLM1	NM_016548	exon7	c.A650G	p.H217R	.	.	156	6	55	0	T|0.830;C|0.170	22
GOLM1	51280	bcgsc.ca	37	9	88661486	88661486	+	Silent	SNP	G	G	A	rs12350451	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLM1	NM_016548	exon5	c.C366T	p.D122D	.	.	124	9	45	0	G|0.995;A|0.005	22
GOLT1A	127845	bcgsc.ca	37	1	204172060	204172060	+	Silent	SNP	G	G	C	rs6689599	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLT1A	NM_198447	exon2	c.C81G	p.L27L	.	.	274	7	121	0	G|0.897;C|0.103	514
GOLT1A	127845	bcgsc.ca	37	1	204172096	204172096	+	Silent	SNP	G	G	A	rs6689607	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOLT1A	NM_198447	exon2	c.C45T	p.T15T	.	.	208	6	103	0	G|0.898;A|0.102	514
GON4L	54856	bcgsc.ca	37	1	155753786	155753786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GON4L	NM_001037533	exon14	c.A1883G	p.Q628R	.	.	287	9	80	0	.	93
GORAB	92344	bcgsc.ca	37	1	170521376	170521376	+	Missense_Mutation	SNP	G	G	A	rs913257	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GORAB	NM_152281	exon5	c.G958A	p.E320K	.	.	207	15	131	0	G|0.448;A|0.552	90
GOT2	2806	bcgsc.ca	37	16	58743454	58743454	+	Missense_Mutation	SNP	A	A	C	rs30842	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOT2	NM_002080	exon9	c.T1037G	p.V346G	.	.	83	8	31	0	A|0.252;C|0.748	91
GOT2	2806	bcgsc.ca	37	16	58757683	58757683	+	Silent	SNP	A	A	G	rs257636	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOT2	NM_002080	exon2	c.T213C	p.N71N	.	.	250	23	119	0	A|0.308;G|0.692	91
GOT2	2806	hgsc.bcm.edu;bcgsc.ca	37	16	58756075	58756075	+	Silent	SNP	G	G	A	rs75336120	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOT2	NM_002080	exon3	c.C354T	p.S118S	.	.	216	11	63	0	G|0.979;A|0.021	91
GOT2	2806	hgsc.bcm.edu;bcgsc.ca	37	16	58757695	58757695	+	Silent	SNP	G	G	A	rs8059441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOT2	NM_002080	exon2	c.C201T	p.Y67Y	.	.	273	14	124	0	G|0.979;A|0.021	91
GOT2	2806	ucsc.edu;bcgsc.ca	37	16	58757668	58757668	+	Silent	SNP	A	A	C	rs14221	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GOT2	NM_002080	exon2	c.T228G	p.V76V	.	.	208	21	107	1	A|0.293;C|0.707;G|0.000	91
GP1BA	2811	bcgsc.ca	37	17	4836673	4836673	+	Silent	SNP	C	C	T	rs6066	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_000173	exon2	c.C774T	p.N258N	.	.	107	6	37	0	C|0.977;T|0.023	.
GPANK1	7918	bcgsc.ca	37	6	31631907	31631907	+	Silent	SNP	G	G	A	rs928814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPANK1	NM_001199238	exon3	c.C349T	p.L117L	.	.	315	13	79	0	G|0.935;A|0.065	91
GPC4	2239	bcgsc.ca	37	X	132437337	132437337	+	Missense_Mutation	SNP	G	G	A	rs1048369	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPC4	NM_001448	exon8	c.C1325T	p.A442V	.	.	102	12	31	0	0|0.012;T|0.075	226
GPC5	2262	bcgsc.ca	37	13	92380813	92380813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPC5	NM_004466	exon4	c.A1048G	p.R350G	.	.	108	5	52	0	.	519
GPI	2821	bcgsc.ca	37	19	34872382	34872382	+	Silent	SNP	G	G	A	rs1864139	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPI	NM_001184722	exon9	c.G795A	p.K265K	.	.	359	17	87	0	G|0.897;A|0.103	228
GPLD1	2822	bcgsc.ca	37	6	24489691	24489691	+	Missense_Mutation	SNP	G	G	C	rs2235501	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPLD1	NM_001503	exon1	c.C49G	p.L17V	.	.	164	12	53	0	G|0.864;C|0.136	228
GPR110	266977	bcgsc.ca	37	6	46976812	46976812	+	Missense_Mutation	SNP	T	T	C	rs1226475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR110	NM_153840	exon11	c.A2359G	p.I787V	.	.	212	13	69	0	T|0.836;C|0.164	71
GPR110	266977	bcgsc.ca	37	6	46977458	46977458	+	Missense_Mutation	SNP	T	T	C	rs937057	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR110	NM_153840	exon11	c.A1713G	p.I571M	.	.	95	5	59	0	T|0.832;C|0.168	71
GPR112	139378	bcgsc.ca	37	X	135426968	135426968	+	Missense_Mutation	SNP	C	C	A	rs5930931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon6	c.C1103A	p.P368H	.	.	80	6	40	0	0|0.025;A|0.455	183
GPR112	139378	bcgsc.ca	37	X	135429503	135429503	+	Missense_Mutation	SNP	C	C	A	rs4829830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon6	c.C3638A	p.T1213N	.	.	124	5	53	0	0|0.015;A|0.479	183
GPR112	139378	bcgsc.ca	37	X	135430044	135430044	+	Silent	SNP	T	T	C	rs877761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon6	c.T4179C	p.T1393T	.	.	146	7	51	0	T|0.335;0|0.003	183
GPR112	139378	bcgsc.ca	37	X	135430483	135430483	+	Missense_Mutation	SNP	T	T	C	rs912002	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon6	c.T4618C	p.S1540P	.	.	91	6	38	0	0|0.015;C|0.478	183
GPR112	139378	bcgsc.ca	37	X	135431236	135431236	+	Missense_Mutation	SNP	T	T	C	rs5930932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon6	c.T5371C	p.F1791L	.	.	269	21	109	0	0|0.015;C|0.499	183
GPR112	139378	bcgsc.ca	37	X	135431358	135431358	+	Silent	SNP	C	C	T	rs5930933	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon6	c.C5493T	p.P1831P	.	.	109	10	46	0	C|0.507;0|0.003	183
GPR112	139378	bcgsc.ca	37	X	135474420	135474420	+	Silent	SNP	C	C	A	rs1329546	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon17	c.C7941A	p.T2647T	.	.	285	28	91	1	C|0.327;A|0.673	183
GPR112	139378	bcgsc.ca	37	X	135480126	135480126	+	Silent	SNP	T	T	C	rs5974595	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon20	c.T8271C	p.F2757F	.	.	146	8	38	0	T|0.287;C|0.713	183
GPR112	139378	bcgsc.ca	37	X	135496398	135496398	+	Silent	SNP	G	G	A	rs5930942	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR112	NM_153834	exon25	c.G9117A	p.T3039T	.	.	242	15	100	1	0|0.003;A|0.710	183
GPR113	165082	bcgsc.ca	37	2	26539204	26539204	+	Missense_Mutation	SNP	C	C	A	rs79188484	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR113	NM_001145168	exon5	c.G615T	p.Q205H	.	.	150	11	63	0	C|0.977;A|0.023	94
GPR113	165082	hgsc.bcm.edu;bcgsc.ca	37	2	26535844	26535844	+	Silent	SNP	C	C	T	rs75113578	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR113	NM_001145168	exon10	c.G1620A	p.E540E	.	.	140	9	46	0	C|0.978;T|0.022	94
GPR116	221395	bcgsc.ca	37	6	46826979	46826979	+	Silent	SNP	A	A	G	rs9381487	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR116	NM_015234	exon17	c.T2661C	p.Y887Y	.	.	257	13	94	0	A|0.733;G|0.267	91
GPR116	221395	bcgsc.ca	37	6	46827239	46827239	+	Missense_Mutation	SNP	C	C	T	rs9395218	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR116	NM_015234	exon17	c.G2401A	p.V801I	.	.	168	13	86	0	C|0.761;T|0.239	91
GPR116	221395	bcgsc.ca	37	6	46851296	46851296	+	Silent	SNP	C	C	T	rs78333594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR116	NM_015234	exon6	c.G612A	p.A204A	.	.	251	8	81	0	C|0.976;T|0.024	91
GPR126	57211	bcgsc.ca	37	6	142691549	142691549	+	Missense_Mutation	SNP	A	A	C	rs11155242	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR126	NM_198569	exon4	c.A688C	p.K230Q	.	.	132	6	85	0	A|0.830;C|0.170	91
GPR139	124274	bcgsc.ca	37	16	20043330	20043330	+	Silent	SNP	T	T	C	rs2147865	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR139	NM_001002911	exon2	c.A789G	p.V263V	.	.	136	8	101	0	T|0.549;C|0.451	92
GPR148	344561	bcgsc.ca	37	2	131487200	131487200	+	Missense_Mutation	SNP	T	T	C	rs79432147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR148	NM_207364	exon1	c.T476C	p.F159S	.	.	175	8	53	1	T|0.978;C|0.022	91
GPR151	134391	bcgsc.ca	37	5	145894896	145894896	+	Missense_Mutation	SNP	G	G	C	rs7709485	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR151	NM_194251	exon1	c.C781G	p.L261V	.	.	208	8	75	0	G|0.723;C|0.277	92
GPR152	390212	bcgsc.ca	37	11	67220004	67220004	+	Silent	SNP	C	C	T	rs1790756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR152	NM_206997	exon1	c.G192A	p.T64T	.	.	62	5	29	0	C|0.879;T|0.121	90
GPR152	390212	bcgsc.ca	37	11	67220175	67220175	+	Silent	SNP	A	A	G	rs1638560	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR152	NM_206997	exon1	c.T21C	p.A7A	.	.	171	17	51	0	A|0.839;G|0.161	90
GPR173	54328	ucsc.edu	37	X	53106865	53106865	+	Silent	SNP	C	C	T	rs11091720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR173	NM_018969	exon2	c.C1062T	p.H354H	.	.	46	5	22	0	C|0.687;T|0.313	130
GPR183	1880	bcgsc.ca	37	13	99948178	99948178	+	Silent	SNP	C	C	A	rs2230342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR183	NM_004951	exon2	c.G222T	p.V74V	.	.	307	20	123	1	C|0.698;A|0.302	522
GPR39	2863	bcgsc.ca	37	2	133175152	133175152	+	Silent	SNP	C	C	T	rs34714906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR39	NM_001508	exon1	c.C537T	p.P179P	.	.	91	7	52	0	C|0.926;T|0.074	226
GPR55	9290	bcgsc.ca	37	2	231774844	231774844	+	Silent	SNP	G	G	A	rs2396777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR55	NM_005683	exon2	c.C834T	p.N278N	.	.	125	6	68	0	G|0.690;N|0.000	91
GPR55	9290	bcgsc.ca	37	2	231775094	231775094	+	Missense_Mutation	SNP	C	C	A	rs3749073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR55	NM_005683	exon2	c.G584T	p.G195V	.	.	151	11	40	0	C|0.826;A|0.174	91
GPR6	2830	bcgsc.ca	37	6	110300834	110300834	+	Silent	SNP	G	G	T	rs79008323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR6	NM_005284	exon1	c.G519T	p.A173A	.	.	81	5	32	0	G|0.982;T|0.018	90
GPR98	84059	bcgsc.ca	37	5	89943433	89943433	+	Silent	SNP	A	A	G	rs950692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon17	c.A3141G	p.A1047A	.	.	246	12	81	0	A|0.791;G|0.209	103
GPR98	84059	bcgsc.ca	37	5	89979691	89979691	+	Missense_Mutation	SNP	A	A	G	rs41303352	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon28	c.A5953G	p.N1985D	.	.	198	9	84	0	A|0.773;G|0.227	103
GPR98	84059	bcgsc.ca	37	5	89985882	89985882	+	Missense_Mutation	SNP	A	A	G	rs10037067	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon30	c.A6695G	p.Y2232C	.	.	123	8	57	0	A|0.636;G|0.363	103
GPR98	84059	bcgsc.ca	37	5	89988504	89988504	+	Missense_Mutation	SNP	A	A	G	rs2366926	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon32	c.A7034G	p.N2345S	.	.	373	13	160	0	A|0.667;G|0.333	103
GPR98	84059	bcgsc.ca	37	5	89989779	89989779	+	Silent	SNP	G	G	A	rs16876822	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon33	c.G7206A	p.E2402E	.	.	164	6	57	0	G|0.672;A|0.328	103
GPR98	84059	bcgsc.ca	37	5	90016871	90016871	+	Missense_Mutation	SNP	G	G	A	rs16869032	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon45	c.G9743A	p.G3248D	.	.	150	8	53	0	G|0.791;A|0.209	103
GPR98	84059	bcgsc.ca	37	5	90020923	90020923	+	Silent	SNP	T	T	G	rs16869042	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon47	c.T9927G	p.P3309P	.	.	326	18	151	0	G|0.336;N|0.001	103
GPR98	84059	bcgsc.ca	37	5	90052372	90052372	+	Silent	SNP	C	C	T	rs2438349	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPR98	NM_032119	exon56	c.C11682T	p.P3894P	.	.	195	16	65	0	C|0.467;T|0.533	103
GPRASP1	9737	bcgsc.ca	37	X	101912681	101912681	+	Silent	SNP	G	G	A	rs148062032	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPRASP1	NM_001099411	exon3	c.G3840A	p.G1280G	.	.	179	17	67	0	G|0.993;A|0.007	131
GPRC5A	9052	bcgsc.ca	37	12	13061535	13061535	+	Missense_Mutation	SNP	A	A	G	rs850932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPRC5A	NM_003979	exon2	c.A352G	p.S118G	.	.	330	16	92	0	T|0.207;G|0.048	90
GPRIN3	285513	bcgsc.ca	37	4	90169846	90169846	+	Silent	SNP	A	A	G	rs34922540	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPRIN3	NM_198281	exon2	c.T1416C	p.S472S	.	.	239	17	71	0	A|0.981;G|0.019	71
GPS1	2873	bcgsc.ca	37	17	80013064	80013064	+	Silent	SNP	C	C	G	rs11539402	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPS1	NM_212492	exon6	c.C834G	p.T278T	.	.	91	5	36	0	C|0.956;G|0.044	226
GPSM1	26086	bcgsc.ca	37	9	139229069	139229069	+	Silent	SNP	C	C	T	rs61739402	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPSM1	NM_015597	exon2	c.C234T	p.Y78Y	.	.	72	4	40	0	C|0.987;T|0.013	90
GPSM2	29899	bcgsc.ca	37	1	109441572	109441572	+	Silent	SNP	A	A	G	rs12069435	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPSM2	NM_013296	exon7	c.A753G	p.A251A	.	.	479	26	295	0	A|0.970;G|0.030	227
GPT2	84706	broad.mit.edu;mdanderson.org	37	16	46940855	46940855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GPT2	NM_133443	exon5	c.T544C	p.Y182H	.	.	227	41	111	2	.	92
GRAMD1C	54762	bcgsc.ca	37	3	113594349	113594349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRAMD1C	NM_017577	exon4	c.A278G	p.Q93R	.	.	187	6	53	0	.	93
GRAMD1C	54762	bcgsc.ca	37	3	113656962	113656962	+	Missense_Mutation	SNP	G	G	A	rs79673945	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRAMD1C	NM_017577	exon15	c.G1663A	p.V555I	.	.	250	8	100	0	G|0.992;A|0.008	93
GRAMD3	65983	ucsc.edu;bcgsc.ca	37	5	125802027	125802027	+	Missense_Mutation	SNP	G	G	A	rs62394179		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRAMD3	NM_001146321	exon3	c.G226A	p.E76K	.	.	229	23	108	0	G|0.787;A|0.213	90
GREB1	9687	bcgsc.ca	37	2	11725908	11725908	+	Missense_Mutation	SNP	G	G	A	rs6744817	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GREB1	NM_148903	exon9	c.G1036A	p.V346M	.	.	207	17	55	0	G|0.906;A|0.094	91
GREB1	9687	bcgsc.ca	37	2	11736305	11736305	+	Missense_Mutation	SNP	G	G	A	rs36030386	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GREB1	NM_014668	exon13	c.G1894A	p.A632T	.	.	182	13	78	0	G|0.826;A|0.174	91
GRIK1	2897	bcgsc.ca	37	21	31062070	31062070	+	Silent	SNP	T	T	G	rs363538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRIK1	NM_175611	exon3	c.A522C	p.T174T	.	.	493	43	201	0	T|0.690;G|0.310	137
GRIN2C	2905	bcgsc.ca	37	17	72838649	72838649	+	Missense_Mutation	SNP	C	C	A	rs3744215	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRIN2C	NM_000835	exon13	c.G3627T	p.R1209S	.	.	151	10	37	0	C|0.690;A|0.310	228
GRIN3A	116443	bcgsc.ca	37	9	104335690	104335690	+	Silent	SNP	C	C	T	rs16920497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRIN3A	NM_133445	exon9	c.G3114A	p.L1038L	.	.	272	9	157	0	C|0.941;T|0.059	96
GRIN3A	116443	bcgsc.ca	37	9	104449098	104449098	+	Missense_Mutation	SNP	C	C	T	rs10989591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRIN3A	NM_133445	exon2	c.G1084A	p.V362M	.	.	134	9	53	0	C|0.652;T|0.348	96
GRIP1	23426	bcgsc.ca	37	12	66932957	66932957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRIP1	NM_001178074	exon4	c.A319G	p.I107V	.	.	274	9	79	0	.	494
GRM1	2911	bcgsc.ca	37	6	146480637	146480637	+	Missense_Mutation	SNP	G	G	A	rs7760248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRM1	NM_000838	exon3	c.G854A	p.R285K	.	.	95	6	37	0	G|0.997;A|0.003	1080
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146720154	146720154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRM1	NM_000838	exon8	c.A1979G	p.Q660R	.	.	463	156	126	1	.	1080
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146755304	146755304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRM1	NM_000838	exon9	c.C2957A	p.A986E	.	.	96	29	38	0	.	1080
GRM4	2914	bcgsc.ca	37	6	34008006	34008006	+	Silent	SNP	A	A	G	rs2229900	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRM4	NM_000841	exon8	c.T1455C	p.D485D	.	.	134	6	44	0	T|0.215;G|0.225	525
GRM8	2918	bcgsc.ca	37	7	126542667	126542667	+	Missense_Mutation	SNP	A	A	T	rs78124913	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GRM8	NM_000845	exon5	c.T1085A	p.F362Y	.	.	228	16	71	0	A|0.702;T|0.298	581
GSG2	83903	hgsc.bcm.edu;bcgsc.ca	37	17	3628493	3628493	+	Missense_Mutation	SNP	A	A	G	rs7223226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSG2	NM_031965	exon1	c.A1264G	p.N422D	.	.	237	11	78	0	A|0.995;G|0.005	297
GSK3B	2932	bcgsc.ca	37	3	119666135	119666135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSK3B	NM_002093	exon3	c.T346C	p.F116L	.	.	87	4	43	0	.	978
GSPT1	2935	bcgsc.ca	37	16	11969724	11969724	+	Silent	SNP	G	G	C	rs33657	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSPT1	NM_002094	exon14	c.C1755G	p.V585V	.	.	613	37	218	0	G|0.554;C|0.446	206
GSTA2	2939	bcgsc.ca	37	6	52615415	52615415	+	Missense_Mutation	SNP	T	T	G	rs6577	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSTA2	NM_000846	exon7	c.A629C	p.E210A	.	.	268	16	91	0	T|0.753;G|0.247	91
GSTM2	2946	bcgsc.ca	37	1	110211956	110211956	+	Silent	SNP	C	C	T	rs592792	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSTM2	NM_001142368	exon4	c.C222T	p.N74N	.	.	212	9	62	0	T|0.105;G|0.185	514
GSTM5	2949	bcgsc.ca	37	1	110257590	110257590	+	Silent	SNP	T	T	C	rs2229059	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSTM5	NM_000851	exon6	c.T382C	p.L128L	.	.	541	25	223	1	T|0.956;C|0.044	514
GSTM5	2949	bcgsc.ca	37	1	110257831	110257831	+	Missense_Mutation	SNP	T	T	C	rs67757008	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	GSTM5,brain,glioma,0	GSTM5	NM_000851	exon7	c.T536C	p.L179P	.	.	675	21	280	0	CAAATC|0.500;TAAACT|0.500	514
GSTO2	119391	bcgsc.ca	37	10	106039185	106039185	+	Missense_Mutation	SNP	A	A	G	rs156697	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSTO2	NM_183239	exon5	c.A424G	p.N142D	.	.	128	6	45	0	A|0.537;G|0.463	91
GSTP1	2950	bcgsc.ca	37	11	67352689	67352689	+	Missense_Mutation	SNP	A	A	G	rs1695	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GSTP1	NM_000852	exon5	c.A313G	p.I105V	.	.	103	5	38	0	A|0.689;G|0.311	91
GTF2F1	2962	bcgsc.ca	37	19	6380469	6380469	+	Silent	SNP	C	C	T	rs17625356	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTF2F1	NM_002096	exon13	c.G1377A	p.V459V	.	.	204	16	58	0	C|0.973;T|0.027	115
GTF2IRD1	9569	ucsc.edu	37	7	73969541	73969541	+	Missense_Mutation	SNP	A	A	G	rs2301895	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTF2IRD1	NM_001199207	exon18	c.A2050G	p.M684V	.	.	49	6	20	0	A|0.616;G|0.384	94
GTF3C2	2976	hgsc.bcm.edu	37	2	27564998	27564998	+	Silent	SNP	C	C	T	rs77603674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTF3C2	NM_001521	exon5	c.T672A	p.G224G	.	.	200	10	42	0	C|0.998;T|0.002	92
GTF3C3	9330	bcgsc.ca	37	2	197662526	197662526	+	Missense_Mutation	SNP	T	T	C	rs11559078	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTF3C3	NM_001206774	exon2	c.A209G	p.N70S	.	.	378	13	103	0	T|0.551;G|0.038;C|0.062;N|0.000;A|0.350	97
GTF3C4	9329	bcgsc.ca	37	9	135554566	135554566	+	Silent	SNP	G	G	A	rs371169	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTF3C4	NM_012204	exon2	c.G1560A	p.E520E	.	.	189	20	96	0	G|0.531;A|0.469	91
GTPBP1	9567	bcgsc.ca	37	22	39122038	39122038	+	Silent	SNP	C	C	T	rs16999297	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTPBP1	NM_004286	exon7	c.C1101T	p.N367N	.	.	215	9	58	0	C|0.920;T|0.080	91
GTPBP2	54676	ucsc.edu;bcgsc.ca	37	6	43590408	43590408	+	Silent	SNP	G	G	A	rs16896609	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GTPBP2	NM_019096	exon10	c.C1429T	p.L477L	.	.	102	14	56	0	G|0.811;A|0.189	92
GUCA2B	2981	ucsc.edu	37	1	42619152	42619152	+	Missense_Mutation	SNP	C	C	A	rs2297567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GUCA2B	NM_007102	exon1	c.C31A	p.P11T	.	.	47	4	15	0	C|0.831;A|0.169	90
GUCY1A2	2977	bcgsc.ca	37	11	106647180	106647180	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GUCY1A2	NM_000855	exon6	c.T1821C	p.D607D	.	.	252	7	111	0	.	589
GUCY2F	2986	bcgsc.ca	37	X	108647653	108647653	+	Missense_Mutation	SNP	C	C	G	rs35474112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GUCY2F	NM_001522	exon10	c.G2029C	p.V677L	.	.	193	18	69	0	C|0.982;G|0.018	540
GYG2	8908	ucsc.edu	37	X	2774609	2774609	+	Silent	SNP	G	G	A	rs17090628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	GYG2	NM_003918	exon7	c.G651A	p.P217P	.	.	73	8	18	0	0|0.003;A|0.092	132
H1FOO	132243	bcgsc.ca	37	3	129267910	129267910	+	Missense_Mutation	SNP	G	G	A	rs61737314	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	H1FOO	NM_153833	exon3	c.G445A	p.A149T	.	.	110	7	81	0	G|0.913;A|0.087	91
H1FOO	132243	bcgsc.ca	37	3	129268026	129268026	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	H1FOO	NM_153833	exon3	c.T561C	p.P187P	.	.	144	15	85	1	.	91
H1FOO	132243	bcgsc.ca	37	3	129269961	129269961	+	Silent	SNP	T	T	C	rs3736170	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	H1FOO	NM_153833	exon5	c.T819C	p.G273G	.	.	259	9	75	0	T|0.942;C|0.058	91
H2BFWT	158983	bcgsc.ca	37	X	103267974	103267974	+	Missense_Mutation	SNP	G	G	A	rs17332043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	H2BFWT	NM_001002916	exon1	c.C259T	p.R87W	.	.	98	8	37	0	0|0.003;A|0.015	131
H2BFWT	158983	ucsc.edu;bcgsc.ca	37	X	103267865	103267865	+	Missense_Mutation	SNP	C	C	T	rs553509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	H2BFWT	NM_001002916	exon1	c.G368A	p.R123H	.	.	90	15	29	0	C|0.378;0|0.003	131
H6PD	9563	hgsc.bcm.edu;bcgsc.ca	37	1	9307075	9307075	+	Silent	SNP	C	C	T	rs36094664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	H6PD	NM_004285	exon3	c.C678T	p.D226D	.	.	115	8	37	0	C|0.991;T|0.009	90
HAAO	23498	bcgsc.ca	37	2	43015719	43015719	+	Missense_Mutation	SNP	T	T	C	rs3816183	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAAO	NM_012205	exon2	c.A109G	p.I37V	.	.	279	8	94	0	T|0.192;C|0.808	91
HABP4	22927	bcgsc.ca	37	9	99227649	99227649	+	Silent	SNP	G	G	A	rs34565527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HABP4	NM_014282	exon3	c.G543A	p.P181P	.	.	82	6	75	0	G|0.975;A|0.025	91
HACE1	57531	bcgsc.ca	37	6	105198267	105198267	+	Silent	SNP	A	A	G	rs7752614	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HACE1	NM_020771	exon20	c.T2292C	p.F764F	.	.	222	15	98	0	A|0.805;G|0.195	663
HAL	3034	bcgsc.ca	37	12	96384249	96384249	+	Silent	SNP	T	T	C	rs36014288	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAL	NM_001258334	exon10	c.A777G	p.P259P	.	.	197	21	51	0	T|0.867;C|0.133	93
HAL	3034	bcgsc.ca	37	12	96387765	96387765	+	Silent	SNP	T	T	A	rs2302628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAL	NM_001258334	exon6	c.A423T	p.T141T	.	.	189	7	48	0	T|0.913;A|0.087	93
HAPLN1	1404	bcgsc.ca	37	5	82937538	82937538	+	Missense_Mutation	SNP	T	T	C	rs6864342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAPLN1	NM_001884	exon5	c.A842G	p.N281S	.	.	177	14	66	0	T|0.929;C|0.071	580
HAPLN1	1404	bcgsc.ca	37	5	82940273	82940273	+	Silent	SNP	C	C	G	rs2242128	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAPLN1	NM_001884	exon4	c.G684C	p.G228G	.	.	167	14	80	0	C|0.271;G|0.729	580
HAUS6	54801	bcgsc.ca	37	9	19058425	19058425	+	Silent	SNP	G	G	A	rs62563591	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAUS6	NM_017645	exon16	c.C2340T	p.L780L	.	.	229	14	150	0	G|0.250;A|0.750	92
HAUS6	54801	bcgsc.ca	37	9	19087154	19087154	+	Silent	SNP	T	T	C	rs7875404	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAUS6	NM_017645	exon6	c.A585G	p.Q195Q	.	.	197	9	101	0	T|0.849;C|0.151	92
HAUS7	55559	bcgsc.ca	37	X	152735959	152735959	+	Silent	SNP	C	C	T	rs2032436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HAUS7	NM_017518	exon1	c.G87A	p.E29E	.	.	157	12	63	0	C|0.857;T|0.143	90
HBEGF	1839	bcgsc.ca	37	5	139722345	139722345	+	Silent	SNP	G	G	A	rs2074611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HBEGF	NM_001945	exon3	c.C273T	p.H91H	.	.	413	35	149	0	T|0.029;G|0.649;C|0.240;A|0.082	90
HBS1L	10767	bcgsc.ca	37	6	135306521	135306521	+	Missense_Mutation	SNP	T	T	C	rs73774527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HBS1L	NM_006620	exon12	c.A1450G	p.I484V	.	.	265	9	133	0	T|0.958;C|0.042	92
HBS1L	10767	bcgsc.ca	37	6	135317922	135317922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HBS1L	NM_006620	exon7	c.A958G	p.R320G	.	.	66	4	31	0	.	92
HBS1L	10767	bcgsc.ca	37	6	135371727	135371727	+	Silent	SNP	C	C	G	rs35916433	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HBS1L	NM_001145207	exon2	c.G102C	p.P34P	.	.	419	12	153	0	C|0.670;G|0.330	92
HCFC1	3054	bcgsc.ca	37	X	153215839	153215839	+	Silent	SNP	G	G	A	rs3027875		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HCFC1	NM_005334	exon24	c.C5859T	p.C1953C	.	.	67	9	34	0	G|0.712;A|0.288	132
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153222195	153222195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HCFC1	NM_005334	exon15	c.C2516G	p.P839R	.	.	52	34	17	0	.	132
HCLS1	3059	bcgsc.ca	37	3	121361787	121361787	+	Silent	SNP	G	G	A	rs2070178	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HCLS1	NM_005335	exon6	c.C441T	p.H147H	.	.	170	10	50	0	G|0.772;A|0.228	90
HCRTR2	3062	bcgsc.ca	37	6	55142261	55142261	+	Silent	SNP	G	G	A	rs12111299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HCRTR2	NM_001526	exon5	c.G846A	p.T282T	.	.	172	6	91	0	G|0.973;A|0.027	525
HCST	10870	bcgsc.ca	37	19	36394678	36394678	+	Silent	SNP	T	T	C	rs8106495	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HCST	NM_001007469	exon3	c.T114C	p.S38S	.	.	184	13	44	0	T|0.912;C|0.088	226
HDAC4	9759	bcgsc.ca	37	2	240003870	240003870	+	Silent	SNP	G	G	A	rs1063639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HDAC4	NM_006037	exon21	c.C2565T	p.P855P	.	.	284	17	81	0	G|0.456;A|0.544	291
HDAC9	9734	bcgsc.ca	37	7	18631186	18631186	+	Silent	SNP	C	C	T	rs34096894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HDAC9	NM_001204144	exon7	c.C580T	p.L194L	.	.	128	6	44	0	C|0.963;T|0.037	227
HDHD1	8226	ucsc.edu	37	X	6995315	6995315	+	Silent	SNP	C	C	T	rs2379206	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HDHD1	NM_001135565	exon4	c.G525A	p.P175P	.	.	100	9	15	0	C|0.346;T|0.654	130
HEATR1	55127	bcgsc.ca	37	1	236734896	236734896	+	Silent	SNP	T	T	C	rs61730304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEATR1	NM_018072	exon27	c.A3798G	p.L1266L	.	.	371	21	154	0	T|0.969;C|0.031	93
HEATR3	55027	bcgsc.ca	37	16	50112794	50112794	+	Missense_Mutation	SNP	G	G	T	rs34703459	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEATR3	NM_182922	exon7	c.G906T	p.R302S	.	.	124	8	50	0	G|0.964;T|0.036	92
HEATR5B	54497	bcgsc.ca;mdanderson.org	37	2	37230734	37230734	+	Silent	SNP	C	C	T	rs17497654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEATR5B	NM_019024	exon31	c.G5001A	p.Q1667Q	.	.	316	29	100	0	C|0.834;T|0.166	142
HEATR6	63897	bcgsc.ca	37	17	58121453	58121453	+	Missense_Mutation	SNP	G	G	A	rs16943991	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEATR6	NM_022070	exon20	c.C3017T	p.S1006L	.	.	149	10	37	0	G|0.899;A|0.101	227
HECTD1	25831	bcgsc.ca	37	14	31578762	31578762	+	Silent	SNP	C	C	T	rs17097735	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECTD1	NM_015382	exon36	c.G6321A	p.E2107E	.	.	187	8	92	0	C|0.750;T|0.250	570
HECTD1	25831	bcgsc.ca	37	14	31582526	31582526	+	Silent	SNP	T	T	C	rs2273483	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECTD1	NM_015382	exon33	c.A6021G	p.L2007L	.	.	166	16	69	0	T|0.505;C|0.495	570
HECTD1	25831	bcgsc.ca	37	14	31582630	31582630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECTD1	NM_015382	exon33	c.A5917G	p.S1973G	.	.	211	6	84	0	.	570
HECTD1	25831	bcgsc.ca	37	14	31618293	31618293	+	Silent	SNP	A	A	G	rs35407911		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECTD1	NM_015382	exon14	c.T2229C	p.P743P	.	.	120	6	61	0	A|0.989;G|0.011	570
HECTD1	25831	bcgsc.ca	37	14	31619392	31619392	+	Silent	SNP	T	T	C	rs11620816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECTD1	NM_015382	exon13	c.A1968G	p.Q656Q	.	.	472	26	181	0	C|0.246;T|0.754	570
HECTD2	143279	bcgsc.ca	37	10	93221077	93221077	+	Silent	SNP	G	G	A	rs7920604	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECTD2	NM_182765	exon4	c.G474A	p.T158T	.	.	313	11	127	0	G|0.777;A|0.223	658
HECTD4	283450	bcgsc.ca	37	12	112667675	112667675	+	Silent	SNP	T	T	G	rs1005902	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001109662	exon41	c.A5944C	p.R1982R	.	.	160	12	46	0	T|0.380;G|0.620	.
HECW1	23072	hgsc.bcm.edu;bcgsc.ca	37	7	43548703	43548703	+	Silent	SNP	A	A	G	rs78404575	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HECW1	NM_015052	exon24	c.A4002G	p.V1334V	.	.	274	14	99	0	A|0.997;G|0.003	669
HEG1	57493	bcgsc.ca	37	3	124731485	124731485	+	Missense_Mutation	SNP	C	C	G	rs10804567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEG1	NM_020733	exon6	c.G2938C	p.V980L	.	.	330	23	85	0	C|0.293;G|0.707	70
HEG1	57493	bcgsc.ca	37	3	124731689	124731689	+	Missense_Mutation	SNP	T	T	A	rs78680419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEG1	NM_020733	exon6	c.A2734T	p.T912S	.	.	447	23	147	0	T|0.772;A|0.228	70
HEG1	57493	bcgsc.ca	37	3	124738107	124738107	+	Silent	SNP	C	C	T	rs59232004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEG1	NM_020733	exon5	c.G1587A	p.S529S	.	.	128	7	45	0	C|0.503;T|0.497	70
HEG1	57493	bcgsc.ca	37	3	124739892	124739892	+	Silent	SNP	G	G	A	rs6438874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEG1	NM_020733	exon4	c.C996T	p.A332A	.	.	261	7	139	0	G|0.511;A|0.489	70
HEG1	57493	bcgsc.ca	37	3	124746182	124746182	+	Silent	SNP	C	C	A	rs2333041	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEG1	NM_020733	exon3	c.G780T	p.P260P	.	.	201	6	91	0	A|0.503;C|0.497;T|0.000	70
HELLS	3070	bcgsc.ca	37	10	96352176	96352176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HELLS	NM_018063	exon17	c.A1876G	p.S626G	.	.	205	6	88	0	.	92
HELQ	113510	bcgsc.ca	37	4	84374692	84374692	+	Missense_Mutation	SNP	A	A	G	rs17006837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HELQ	NM_133636	exon2	c.T704C	p.L235P	.	.	296	13	104	0	A|0.864;G|0.136	155
HELQ	113510	bcgsc.ca	37	4	84376739	84376739	+	Silent	SNP	G	G	C	rs146273386	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HELQ	NM_133636	exon1	c.C108G	p.P36P	.	.	88	8	34	0	G|0.998;C|0.002	155
HELZ	9931	bcgsc.ca;mdanderson.org	37	17	65212042	65212042	+	Missense_Mutation	SNP	C	C	T	rs8080100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HELZ	NM_014877	exon5	c.G220A	p.V74M	.	.	819	69	382	1	C|0.830;T|0.170	92
HEPN1	641654	bcgsc.ca	37	11	124789755	124789755	+	Missense_Mutation	SNP	T	T	C	rs3802904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001037558	exon1	c.T109C	p.W37R	.	.	140	12	66	0	T|0.226;C|0.774	.
HERC1	8925	bcgsc.ca	37	15	64067136	64067136	+	Silent	SNP	A	A	T	rs35471228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HERC1	NM_003922	exon2	c.T687A	p.L229L	.	.	146	7	73	0	A|0.972;T|0.028	666
HERC2	8924	bcgsc.ca	37	15	28422627	28422627	+	Silent	SNP	G	G	A	rs61756154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HERC2	NM_004667	exon60	c.C9192T	p.V3064V	.	.	57	6	28	0	G|0.973;A|0.027	234
HERC2	8924	bcgsc.ca	37	15	28478323	28478323	+	Silent	SNP	T	T	C	rs61757160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HERC2	NM_004667	exon30	c.A4644G	p.Q1548Q	.	.	641	31	216	0	T|0.903;C|0.097	234
HERC2P10	390561	bcgsc.ca	37	15	31110099	31110099	+	RNA	SNP	T	T	C	rs8032783	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	589	18	156	0	T|0.945;C|0.055	.
HERC2P10	390561	bcgsc.ca	37	15	31110279	31110279	+	RNA	SNP	G	G	A	rs798112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	260	14	96	0	G|0.765;A|0.235	.
HERC2P2	400322	broad.mit.edu	37	15	23299734	23299734	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	284	41	100	0	.	.
HERC3	8916	bcgsc.ca	37	4	89625427	89625427	+	Missense_Mutation	SNP	G	G	C	rs1804080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HERC3	NM_014606	exon24	c.G2836C	p.E946Q	.	.	332	26	127	0	G|0.801;C|0.199	660
HERC5	51191	bcgsc.ca	37	4	89397091	89397091	+	Missense_Mutation	SNP	A	A	G	rs7699006	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HERC5	NM_016323	exon12	c.A1492G	p.M498V	.	.	255	23	98	0	A|0.480;G|0.520	664
HERC6	55008	bcgsc.ca	37	4	89319296	89319296	+	Missense_Mutation	SNP	T	T	C	rs17014118	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HERC6	NM_017912	exon8	c.T1027C	p.F343L	.	.	453	17	155	1	T|0.490;C|0.510	658
HES7	84667	bcgsc.ca	37	17	8025712	8025712	+	Silent	SNP	A	A	G	rs1348325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HES7	NM_001165967	exon3	c.T175C	p.L59L	.	.	293	11	106	1	A|0.823;G|0.177	658
HEXDC	284004	bcgsc.ca	37	17	80377690	80377690	+	Silent	SNP	T	T	G	rs1141463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HEXDC	NM_173620	exon2	c.T15G	p.T5T	.	.	302	9	122	1	T|0.535;G|0.465	92
HGC6.3	0	ucsc.edu;mdanderson.org	37	6	168377009	168377009	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001129895	exon1	c.A324C	p.P108P	.	.	277	51	70	1	.	.
HGF	3082	bcgsc.ca	37	7	81374374	81374374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HGF	NM_000601	exon6	c.A688G	p.K230E	.	.	64	4	36	0	.	516
HGF	3082	bcgsc.ca	37	7	81388042	81388042	+	Silent	SNP	T	T	C	rs5745635	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HGF	NM_000601	exon3	c.A333G	p.E111E	.	.	276	10	138	0	T|0.897;C|0.103	516
HHIP	64399	bcgsc.ca	37	4	145580866	145580866	+	Missense_Mutation	SNP	G	G	A	rs61730970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HHIP	NM_022475	exon4	c.G707A	p.G236E	.	.	111	8	67	0	G|0.974;A|0.026	283
HHIPL2	79802	bcgsc.ca	37	1	222721288	222721288	+	Silent	SNP	C	C	T	rs4846382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HHIPL2	NM_024746	exon1	c.G99A	p.L33L	.	.	213	7	72	0	C|0.443;T|0.557	69
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222712078	222712078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HHIPL2	NM_024746	exon5	c.G1489A	p.G497R	.	.	219	70	77	0	.	69
HHLA2	11148	hgsc.bcm.edu;bcgsc.ca	37	3	108074043	108074043	+	Missense_Mutation	SNP	G	G	A	rs147302228		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HHLA2	NM_007072	exon5	c.G500A	p.R167H	.	.	244	10	96	0	G|0.994;A|0.006	1
HID1	283987	bcgsc.ca	37	17	72958366	72958366	+	Missense_Mutation	SNP	G	G	A	rs147489114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_030630	exon5	c.C574T	p.H192Y	.	.	146	7	31	0	G|0.983;A|0.017	.
HIF3A	64344	bcgsc.ca	37	19	46812451	46812451	+	Missense_Mutation	SNP	C	C	T	rs61750957	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIF3A	NM_152795	exon6	c.C605T	p.A202V	.	.	156	9	37	0	C|0.920;T|0.080	228
HINT3	135114	bcgsc.ca	37	6	126278230	126278230	+	Missense_Mutation	SNP	G	G	C	rs2295005	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HINT3	NM_138571	exon1	c.G107C	p.G36A	.	.	164	8	50	0	G|0.524;C|0.476	90
HIPK1	204851	bcgsc.ca	37	1	114505000	114505000	+	Silent	SNP	G	G	A	rs17852555	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIPK1	NM_198268	exon9	c.G2043A	p.P681P	.	.	131	6	54	0	G|0.743;A|0.257	361
HIST1H2AK	8330	bcgsc.ca	37	6	27805938	27805938	+	Silent	SNP	G	G	C	rs146250974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIST1H2AK	NM_003510	exon1	c.C180G	p.T60T	.	.	233	11	94	1	G|0.986;C|0.014	91
HIST1H3H	8357	bcgsc.ca	37	6	27778097	27778097	+	Silent	SNP	C	C	T	rs2021835	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIST1H3H	NM_003536	exon1	c.C246T	p.D82D	.	.	240	19	91	1	C|0.945;T|0.055	45
HIST1H3I	8354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27839941	27839941	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIST1H3I	NM_003533	exon1	c.G153C	p.E51D	.	.	120	37	60	0	.	91
HIST3H3	8290	hgsc.bcm.edu;bcgsc.ca	37	1	228612760	228612760	+	Silent	SNP	G	G	A	rs143686240	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIST3H3	NM_003493	exon1	c.C267T	p.A89A	.	.	153	7	54	0	G|0.998;A|0.002	90
HIVEP1	3096	bcgsc.ca	37	6	12124587	12124587	+	Missense_Mutation	SNP	C	C	G	rs2228212	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIVEP1	NM_002114	exon4	c.C4559G	p.A1520G	.	.	136	14	38	0	C|0.715;G|0.285	139
HIVEP3	59269	bcgsc.ca	37	1	41990461	41990461	+	Silent	SNP	G	G	A	rs35122733	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIVEP3	NM_024503	exon6	c.C5328T	p.H1776H	.	.	348	22	80	0	G|0.955;A|0.045	157
HIVEP3	59269	bcgsc.ca	37	1	42047208	42047208	+	Missense_Mutation	SNP	C	C	G	rs17363472	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HIVEP3	NM_024503	exon4	c.G3261C	p.Q1087H	.	.	194	11	81	0	C|0.961;G|0.039	157
HJURP	55355	bcgsc.ca	37	2	234750831	234750831	+	Missense_Mutation	SNP	T	T	C	rs3806589	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HJURP	NM_018410	exon8	c.A595G	p.R199G	.	.	167	12	60	0	T|0.306;C|0.694	69
HK1	3098	bcgsc.ca	37	10	71160750	71160750	+	Silent	SNP	C	C	T	rs34616021	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HK1	NM_033498	exon21	c.C2625T	p.F875F	.	.	129	6	49	0	C|0.982;T|0.018	252
HK1	3098	hgsc.bcm.edu;bcgsc.ca	37	10	71158513	71158513	+	Silent	SNP	C	C	T	rs10998760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HK1	NM_033498	exon20	c.C2550T	p.R850R	.	.	128	13	52	0	C|0.980;T|0.020	252
HK2	3099	bcgsc.ca	37	2	75101454	75101454	+	Silent	SNP	T	T	C	rs2229622	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HK2	NM_000189	exon7	c.T753C	p.D251D	.	.	206	13	79	0	T|0.680;C|0.320	252
HK2	3099	bcgsc.ca	37	2	75116527	75116527	+	Missense_Mutation	SNP	G	G	A	rs2229629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HK2	NM_000189	exon17	c.G2531A	p.R844K	.	.	168	10	79	0	G|0.805;A|0.195	252
HKR1	284459	bcgsc.ca	37	19	37835658	37835658	+	Silent	SNP	C	C	T	rs2305115	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HKR1	NM_181786	exon3	c.C72T	p.S24S	.	.	236	13	133	0	C|0.913;T|0.087	92
HKR1	284459	bcgsc.ca	37	19	37854235	37854235	+	Missense_Mutation	SNP	G	G	T	rs3745765	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HKR1	NM_181786	exon6	c.G1538T	p.S513I	.	.	87	6	51	0	G|0.704;T|0.296	92
HLA-A	3105	bcgsc.ca	37	6	29910371	29910371	+	Missense_Mutation	SNP	C	C	T	rs2230954	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-A	NM_001242758	exon1	c.C41T	p.S14L	.	.	157	8	40	0	C|0.872;T|0.128	92
HLA-A	3105	bcgsc.ca	37	6	29912108	29912108	+	Missense_Mutation	SNP	G	G	C	rs75766454		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-A	NM_001242758	exon4	c.G829C	p.E277Q	.	.	226	16	83	0	.	92
HLA-A	3105	bcgsc.ca	37	6	29912333	29912333	+	Missense_Mutation	SNP	C	C	T	rs3179982	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-A	NM_001242758	exon5	c.C952T	p.L318F	.	.	600	21	138	0	C|0.487;T|0.513	92
HLA-DOB	3112	bcgsc.ca	37	6	32783086	32783086	+	Silent	SNP	A	A	G	rs7383287	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DOB	NM_002120	exon2	c.T96C	p.D32D	.	.	208	22	65	0	A|0.838;G|0.162	91
HLA-DPA1	3113	bcgsc.ca	37	6	33036435	33036435	+	Missense_Mutation	SNP	T	T	G	rs1126769	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPA1	NM_033554	exon4	c.A775C	p.T259P	.	.	339	8	144	0	T|0.815;G|0.185	91
HLA-DPA1	3113	bcgsc.ca	37	6	33036505	33036505	+	Silent	SNP	G	G	C	rs1042434	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPA1	NM_033554	exon4	c.C705G	p.V235V	.	.	204	11	84	0	G|0.627;C|0.373	91
HLA-DPB1	3115	bcgsc.ca	37	6	33048457	33048457	+	Missense_Mutation	SNP	C	C	G	rs1126504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon2	c.C109G	p.L37V	.	.	76	4	43	0	C|0.687;G|0.313	515
HLA-DPB1	3115	bcgsc.ca	37	6	33048459	33048459	+	Silent	SNP	T	T	G	rs1126506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon2	c.T111G	p.L37L	.	.	75	4	43	0	T|0.678;G|0.322	515
HLA-DPB1	3115	bcgsc.ca	37	6	33048461	33048461	+	Missense_Mutation	SNP	T	T	A	rs1126509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon2	c.T113A	p.F38Y	.	.	76	5	41	0	T|0.694;A|0.306	515
HLA-DPB1	3115	bcgsc.ca	37	6	33048539	33048539	+	Missense_Mutation	SNP	T	T	A	rs1042117	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon2	c.T191A	p.F64Y	.	.	73	5	42	0	T|0.803;A|0.197	515
HLA-DPB1	3115	bcgsc.ca	37	6	33052768	33052768	+	Silent	SNP	T	T	C	rs1042187	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon3	c.T406C	p.L136L	.	.	482	23	145	0	A|0.000;C|0.391;G|0.000;T|0.608	515
HLA-DPB1	3115	bcgsc.ca	37	6	33052803	33052803	+	Silent	SNP	G	G	A	rs1042212	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon3	c.G441A	p.T147T	.	.	492	28	143	1	G|0.606;A|0.394	515
HLA-DPB1	3115	bcgsc.ca	37	6	33052950	33052950	+	Silent	SNP	T	T	C	rs1042331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon3	c.T588C	p.D196D	.	.	272	25	77	1	T|0.609;C|0.391	515
HLA-DPB1	3115	bcgsc.ca	37	6	33052958	33052958	+	Missense_Mutation	SNP	C	C	T	rs1042335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DPB1	NM_002121	exon3	c.C596T	p.T199I	.	.	261	24	71	1	C|0.607;T|0.393	515
HLA-DQA1	3117	bcgsc.ca;mdanderson.org	37	6	32610529	32610529	+	Silent	SNP	A	A	G	rs13379	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-DQA1	NM_002122	exon4	c.A756G	p.Q252Q	.	.	177	39	42	0	A|0.973;G|0.027	90
HLA-DRB6	3128	broad.mit.edu	37	6	32521700	32521700	+	RNA	SNP	G	G	A	rs61104187		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	85	16	21	0	G|0.848;A|0.152	.
HLA-DRB6	3128	broad.mit.edu	37	6	32522495	32522495	+	RNA	SNP	G	G	A	rs3200488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	132	20	30	0	G|0.410;A|0.590	.
HLA-F	3134	bcgsc.ca	37	6	29691303	29691303	+	Silent	SNP	G	G	A	rs2076183	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLA-F	NM_001098478	exon1	c.G63A	p.A21A	.	.	118	6	44	0	G|0.809;A|0.191	22
HLCS	3141	bcgsc.ca	37	21	38302677	38302677	+	Silent	SNP	G	G	A	rs1065759	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLCS	NM_000411	exon6	c.C1053T	p.N351N	.	.	177	10	46	0	G|0.985;A|0.015	157
HLCS	3141	bcgsc.ca	37	21	38309272	38309272	+	Missense_Mutation	SNP	G	G	A	rs112176097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLCS	NM_000411	exon5	c.C473T	p.T158M	.	.	185	6	59	0	G|0.998;A|0.002	157
HLCS	3141	hgsc.bcm.edu;bcgsc.ca	37	21	38302554	38302554	+	Silent	SNP	C	C	T	rs111603166	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLCS	NM_000411	exon6	c.G1176A	p.A392A	.	.	132	12	38	0	C|0.999;T|0.001	157
HLCS	3141	hgsc.bcm.edu;bcgsc.ca	37	21	38309184	38309184	+	Silent	SNP	G	G	A	rs116114362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLCS	NM_000411	exon5	c.C561T	p.A187A	.	.	138	6	52	0	G|0.995;A|0.005	157
HLX	3142	bcgsc.ca	37	1	221057646	221057646	+	Missense_Mutation	SNP	C	C	T	rs2738755	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HLX	NM_021958	exon4	c.C1067T	p.P356L	.	.	88	7	71	0	C|0.651;T|0.349	70
HMCN1	83872	bcgsc.ca	37	1	186043899	186043899	+	Silent	SNP	T	T	C	rs77026548	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HMCN1	NM_031935	exon53	c.T8166C	p.N2722N	.	.	177	16	89	0	T|0.967;C|0.033	113
HMCN1	83872	bcgsc.ca	37	1	186099654	186099654	+	Missense_Mutation	SNP	A	A	G	rs78541701	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HMCN1	NM_031935	exon85	c.A13055G	p.K4352R	.	.	170	6	61	0	A|0.987;G|0.013	113
HMGXB3	22993	bcgsc.ca	37	5	149416494	149416494	+	Missense_Mutation	SNP	G	G	A	rs61733365		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HMGXB3	NM_014983	exon12	c.G2279A	p.G760E	.	.	217	9	76	0	G|0.990;A|0.010	24
HMOX1	3162	bcgsc.ca	37	22	35782796	35782796	+	Missense_Mutation	SNP	C	C	A	rs146227657	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HMOX1	NM_002133	exon3	c.C263A	p.A88D	.	.	71	6	36	0	C|0.999;A|0.001	91
HNF4G	3174	bcgsc.ca	37	8	76468282	76468282	+	Missense_Mutation	SNP	G	G	A	rs1805098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HNF4G	NM_004133	exon6	c.G681A	p.M227I	.	.	824	32	135	1	G|0.338;A|0.662	187
HOGA1	112817	hgsc.bcm.edu	37	10	99361690	99361690	+	Silent	SNP	G	G	A	rs34820265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HOGA1	NM_138413	exon6	c.G777A	p.T259T	.	.	146	8	17	0	G|0.988;A|0.012	90
HOMEZ	57594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23745661	23745666	+	In_Frame_Del	DEL	GCTTGT	GCTTGT	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GCTTGT	GCTTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HOMEZ	NM_020834	exon2	c.771_776del	p.257_259del	.	.	220	40	63	0	.	22
HOXB8	3218	bcgsc.ca	37	17	46690623	46690623	+	Missense_Mutation	SNP	G	G	C	rs112046402	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HOXB8	NM_024016	exon2	c.C673G	p.L225V	.	.	211	8	106	0	G|0.977;C|0.023	514
HOXD9	3235	bcgsc.ca	37	2	176988765	176988765	+	Silent	SNP	C	C	T	rs35649704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HOXD9	NM_014213	exon2	c.C921T	p.N307N	.	.	195	6	110	0	C|0.987;T|0.013	90
HPD	3242	bcgsc.ca	37	12	122277891	122277891	+	Missense_Mutation	SNP	C	C	A	rs36023382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HPD	NM_002150	exon13	c.G1018T	p.V340L	.	.	237	13	62	0	C|0.985;A|0.015	90
HPS1	3257	bcgsc.ca	37	10	100179851	100179851	+	Missense_Mutation	SNP	T	T	C	rs2296436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HPS1	NM_000195	exon18	c.A1808G	p.Q603R	.	.	149	6	67	0	T|0.878;C|0.122	91
HPS1	3257	bcgsc.ca	37	10	100189568	100189568	+	Missense_Mutation	SNP	C	C	A	rs11592273	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HPS1	NM_000195	exon9	c.G847T	p.G283W	.	.	82	5	32	0	A|0.046;C|0.954	91
HPS3	84343	bcgsc.ca	37	3	148863151	148863151	+	Silent	SNP	A	A	G	rs11718908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HPS3	NM_032383	exon5	c.A981G	p.T327T	.	.	261	16	100	0	A|0.725;G|0.275	158
HPS5	11234	bcgsc.ca	37	11	18333541	18333541	+	Silent	SNP	A	A	G	rs73432728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HPS5	NM_181507	exon3	c.T139C	p.L47L	.	.	95	5	45	0	A|0.977;G|0.023	133
HPSE	10855	bcgsc.ca	37	4	84222208	84222208	+	Silent	SNP	A	A	G	rs11031	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HPSE	NM_001098540	exon11	c.T1377C	p.N459N	.	.	186	9	80	0	A|0.911;G|0.089	227
HR	55806	bcgsc.ca	37	8	21978469	21978469	+	Silent	SNP	A	A	G	rs57903149		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HR	NM_018411	exon11	c.T2370C	p.D790D	.	.	81	6	33	0	A|0.895;G|0.105	154
HRASLS5	117245	bcgsc.ca	37	11	63233710	63233710	+	Silent	SNP	A	A	G	rs2275999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRASLS5	NM_001146728	exon5	c.T619C	p.L207L	.	.	300	11	109	1	A|0.825;G|0.175	91
HRC	3270	bcgsc.ca	37	19	49658084	49658084	+	Silent	SNP	G	G	A	rs57897109	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRC	NM_002152	exon1	c.C411T	p.H137H	.	.	452	20	124	0	G|0.903;A|0.097	91
HRG	3273	bcgsc.ca	37	3	186390627	186390627	+	Missense_Mutation	SNP	C	C	T	rs9898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRG	NM_000412	exon5	c.C610T	p.P204S	.	.	160	7	48	0	C|0.544;T|0.456	91
HRNR	388697	bcgsc.ca	37	1	152186766	152186766	+	Missense_Mutation	SNP	G	G	A	rs79837244	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.C7339T	p.R2447C	.	.	591	47	194	0	G|0.500;A|0.500	93
HRNR	388697	bcgsc.ca	37	1	152188463	152188463	+	Missense_Mutation	SNP	G	G	A	rs61814941	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.C5642T	p.S1881F	.	.	168	18	53	0	G|0.890;A|0.110	93
HRNR	388697	bcgsc.ca	37	1	152192114	152192114	+	Missense_Mutation	SNP	C	C	T	rs7520249	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.G1991A	p.R664Q	.	.	244	24	110	1	C|0.297;T|0.703	93
HRNR	388697	bcgsc.ca	37	1	152192293	152192293	+	Silent	SNP	C	C	T	rs7520375	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.G1812A	p.S604S	.	.	580	45	186	2	C|0.306;T|0.694	93
HRNR	388697	bcgsc.ca	37	1	152193121	152193121	+	Silent	SNP	G	G	T	rs6587651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.C984A	p.G328G	.	.	120	8	59	0	G|0.298;T|0.702	93
HRNR	388697	bcgsc.ca	37	1	152193544	152193544	+	Silent	SNP	A	A	G	rs7535536	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.T561C	p.H187H	.	.	199	12	71	0	A|0.312;G|0.688	93
HRNR	388697	bcgsc.ca	37	1	152193851	152193851	+	Missense_Mutation	SNP	C	C	T	rs11204937	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.G254A	p.R85H	.	.	465	29	129	0	C|0.338;T|0.662	93
HRNR	388697	ucsc.edu;bcgsc.ca	37	1	152191709	152191709	+	Missense_Mutation	SNP	C	C	G	rs6662450	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.G2396C	p.S799T	.	.	138	20	62	0	C|0.317;G|0.683	93
HRNR	388697	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152191879	152191879	+	Silent	SNP	G	G	A	rs10788828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HRNR	NM_001009931	exon3	c.C2226T	p.H742H	.	.	249	31	95	0	G|0.325;A|0.675	93
HS3ST2	9956	ucsc.edu;bcgsc.ca	37	16	22926511	22926511	+	Silent	SNP	A	A	G	rs35682499	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	HS3ST2,NS,NS,0	HS3ST2	NM_006043	exon2	c.A732G	p.S244S	.	.	123	13	28	0	A|0.834;G|0.166	516
HSD11B2	3291	bcgsc.ca	37	16	67469969	67469969	+	Silent	SNP	G	G	A	rs5480	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSD11B2	NM_000196	exon3	c.G588A	p.A196A	.	.	141	10	35	0	G|0.893;A|0.107	90
HSD17B4	3295	bcgsc.ca	37	5	118860938	118860938	+	Missense_Mutation	SNP	T	T	C	rs11539471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSD17B4	NM_001199291	exon19	c.T1606C	p.W536R	.	.	157	8	46	0	T|0.864;C|0.136	92
HSDL1	83693	bcgsc.ca	37	16	84158248	84158248	+	Missense_Mutation	SNP	G	G	C	rs4378600	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSDL1	NM_031463	exon6	c.C980G	p.S327C	.	.	132	6	82	1	G|0.737;C|0.263	90
HSP90AB4P	664618	ucsc.edu	37	15	58983425	58983425	+	RNA	SNP	G	G	C	rs7161889	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	70	8	14	0	G|0.397;C|0.603	.
HSP90B1	7184	bcgsc.ca	37	12	104328030	104328030	+	Silent	SNP	A	A	G	rs144333332	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSP90B1	NM_003299	exon5	c.A708G	p.P236P	.	.	237	8	93	0	A|0.999;G|0.001	93
HSPA13	6782	bcgsc.ca	37	21	15753676	15753676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSPA13	NM_006948	exon2	c.T214C	p.S72P	.	.	238	7	66	1	.	226
HSPA8	3312	hgsc.bcm.edu;bcgsc.ca	37	11	122929023	122929023	+	Silent	SNP	A	A	G	rs113013616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSPA8	NM_006597	exon8	c.T1692C	p.D564D	.	.	293	15	140	0	A|0.994;G|0.006	654
HSPA9	3313	ucsc.edu;mdanderson.org	37	5	137892170	137892170	+	Silent	SNP	G	G	A	rs10117	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSPA9	NM_004134	exon16	c.C1933T	p.L645L	.	.	252	32	93	1	G|0.442;A|0.558	226
HSPB3	8988	bcgsc.ca	37	5	53751901	53751901	+	Silent	SNP	G	G	A	rs7699	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HSPB3	NM_006308	exon1	c.G282A	p.L94L	.	.	191	11	81	0	A|0.529;C|0.000;G|0.471	226
HTATSF1	27336	bcgsc.ca	37	X	135593167	135593167	+	Silent	SNP	G	G	A	rs1058376	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTATSF1	NM_001163280	exon10	c.G1263A	p.A421A	.	.	189	14	94	0	0|0.004;A|0.148	132
HTN3	3347	bcgsc.ca	37	4	70897821	70897821	+	Silent	SNP	C	C	T	rs28491522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTN3	NM_000200	exon4	c.C99T	p.F33F	.	.	1149	44	432	0	C|0.987;T|0.013	92
HTR1A	3350	ucsc.edu	37	5	63257253	63257253	+	Silent	SNP	C	C	T	rs6294	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR1A	NM_000524	exon1	c.G294A	p.V98V	.	.	116	10	58	1	C|0.892;T|0.108	94
HTR2A	3356	bcgsc.ca	37	13	47409467	47409467	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR2A	NM_000621	exon4	c.A921G	p.T307T	.	.	232	9	57	0	.	519
HTR2B	3357	bcgsc.ca	37	2	231973363	231973363	+	Silent	SNP	G	G	A	rs61731723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR2B	NM_000867	exon4	c.C1314T	p.N438N	.	.	274	10	89	0	G|0.965;A|0.035	90
HTR2B	3357	bcgsc.ca	37	2	231988327	231988327	+	Missense_Mutation	SNP	C	C	T	rs61731726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR2B	NM_000867	exon2	c.G152A	p.G51E	.	.	414	15	210	1	C|0.973;T|0.027	90
HTR2C	3358	bcgsc.ca	37	X	113965735	113965735	+	Missense_Mutation	SNP	G	G	C	rs6318	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR2C	NM_000868	exon4	c.G68C	p.C23S	.	.	373	28	130	0	0|0.015;C|0.215	133
HTR3B	9177	bcgsc.ca	37	11	113803104	113803104	+	Silent	SNP	G	G	A	rs2276305	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR3B	NM_006028	exon5	c.G462A	p.A154A	.	.	219	12	71	0	A|0.067;C|0.001;G|0.931	90
HTR3C	170572	bcgsc.ca	37	3	183777709	183777709	+	Missense_Mutation	SNP	C	C	T	rs73052482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR3C	NM_130770	exon8	c.C1019T	p.P340L	.	.	154	6	40	0	C|0.995;T|0.005	154
HTR3C	170572	bcgsc.ca	37	3	183778031	183778031	+	Missense_Mutation	SNP	T	T	C	rs143741187	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR3C	NM_130770	exon9	c.T1235C	p.M412T	.	.	201	7	63	0	T|0.997;C|0.003	154
HTR3C	170572	hgsc.bcm.edu;bcgsc.ca	37	3	183778004	183778004	+	Missense_Mutation	SNP	G	G	T	rs76183574	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR3C	NM_130770	exon9	c.G1208T	p.G403V	.	.	158	8	50	0	G|0.995;T|0.005	154
HTR3D	200909	hgsc.bcm.edu;bcgsc.ca	37	3	183754538	183754538	+	Missense_Mutation	SNP	C	C	T	rs73050313	bycluster;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR3D	NM_001163646	exon5	c.C514T	p.R172W	.	.	115	7	42	0	C|0.999;T|0.001	90
HTR3E	285242	bcgsc.ca	37	3	183823751	183823751	+	Missense_Mutation	SNP	C	C	G	rs143856984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTR3E	NM_001256614	exon5	c.C997G	p.L333V	.	.	202	8	44	0	C|0.995;G|0.005	92
HTRA4	203100	ucsc.edu	37	8	38832634	38832634	+	Missense_Mutation	SNP	T	T	C	rs141254036	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HTRA4	NM_153692	exon2	c.T551C	p.V184A	.	.	54	5	26	0	T|0.999;C|0.001	90
HUWE1	10075	bcgsc.ca	37	X	53641647	53641647	+	Silent	SNP	T	T	C	rs6638360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HUWE1	NM_031407	exon23	c.A2109G	p.S703S	.	.	181	8	45	0	T|0.629;C|0.371	280
HYAL1	3373	hgsc.bcm.edu;bcgsc.ca	37	3	50337945	50337945	+	Missense_Mutation	SNP	G	G	C	rs142342237	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HYAL1	NM_033159	exon4	c.C1277G	p.A426G	.	.	187	10	52	0	G|0.994;C|0.006	278
HYAL2	8692	bcgsc.ca	37	3	50355730	50355730	+	Missense_Mutation	SNP	T	T	G	rs35455589	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HYAL2	NM_033158	exon5	c.A1252C	p.I418L	.	.	151	6	42	0	T|0.863;G|0.137	279
HYAL3	8372	bcgsc.ca	37	3	50331107	50331107	+	Missense_Mutation	SNP	C	C	T	rs75105878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HYAL3	NM_001200029	exon3	c.G940A	p.A314T	.	.	124	7	35	0	C|0.994;T|0.006	279
HYDIN	54768	bcgsc.ca	37	16	71103315	71103315	+	Missense_Mutation	SNP	T	T	C	rs146523564	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HYDIN	NM_001198542	exon14	c.A1910G	p.H637R	.	.	299	20	129	0	T|0.986;C|0.014	92
HYDIN	54768	hgsc.bcm.edu;bcgsc.ca	37	16	70902610	70902610	+	Missense_Mutation	SNP	G	G	A	rs79417681		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	HYDIN	NM_001270974	exon66	c.C11173T	p.R3725W	.	.	168	11	72	0	.	92
HYPK	25764	bcgsc.ca	37	15	44093927	44093927	+	Missense_Mutation	SNP	T	T	C	rs12702	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016400	exon4	c.T313C	p.S105P	.	.	86	7	52	0	T|0.812;C|0.188	.
IARS	3376	bcgsc.ca	37	9	95009786	95009786	+	Silent	SNP	A	A	G	rs2230404	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IARS	NM_013417	exon26	c.T2664C	p.Y888Y	.	.	248	23	82	0	T|0.327;G|0.038;C|0.025;A|0.610	92
IBTK	25998	bcgsc.ca	37	6	82901514	82901514	+	Missense_Mutation	SNP	A	A	T	rs116533551	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IBTK	NM_015525	exon24	c.T3421A	p.S1141T	.	.	318	10	149	0	A|0.985;T|0.015	92
ICAM1	3383	ucsc.edu;bcgsc.ca	37	19	10395683	10395683	+	Missense_Mutation	SNP	A	A	G	rs5498	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ICAM1	NM_000201	exon6	c.A1405G	p.K469E	.	.	67	9	25	0	A|0.656;G|0.344	91
ICK	22858	bcgsc.ca	37	6	52881022	52881022	+	Silent	SNP	A	A	G	rs113315648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ICK	NM_016513	exon9	c.T690C	p.L230L	.	.	128	6	56	0	A|0.991;G|0.009	421
ICMT	23463	bcgsc.ca	37	1	6292070	6292070	+	Silent	SNP	C	C	T	rs35465282	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ICMT	NM_012405	exon4	c.G564A	p.V188V	.	.	144	8	64	0	C|0.975;T|0.025	650
ICOSLG	23308	ucsc.edu;bcgsc.ca	37	21	45656774	45656774	+	Missense_Mutation	SNP	C	C	T	rs11558819	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ICOSLG	NM_015259	exon3	c.G382A	p.V128I	.	.	57	6	32	1	C|0.739;T|0.261	90
IDH1	3417	bcgsc.ca	37	2	209108317	209108317	+	Missense_Mutation	SNP	C	C	T	rs34218846	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	IDH1,NS,carcinoma,0	IDH1	NM_005896	exon6	c.G532A	p.V178I	.	.	103	7	49	0	C|0.946;T|0.054	23522
IDH1	3417	bcgsc.ca	37	2	209113192	209113192	+	Silent	SNP	G	G	A	rs11554137	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IDH1	NM_005896	exon4	c.C315T	p.G105G	.	.	406	18	110	0	G|0.935;A|0.065	23522
IDH1	3417	bcgsc.ca	37	2	209113296	209113296	+	Missense_Mutation	SNP	C	C	T	rs73070954	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	IDH1,NS,carcinoma,0	IDH1	NM_005896	exon4	c.G211A	p.V71I	.	.	381	12	103	0	C|0.985;T|0.015	23522
IDI2-AS1	55853	bcgsc.ca	37	10	1088565	1088565	+	RNA	SNP	T	T	C	rs7074880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	249	9	109	0	T|0.966;C|0.034	.
IDI2-AS1	55853	bcgsc.ca;mdanderson.org	37	10	1088508	1088508	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	141	60	74	0	.	.
IDO2	169355	bcgsc.ca	37	8	39871135	39871135	+	Silent	SNP	C	C	T	rs2001923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IDO2	NM_194294	exon10	c.C810T	p.S270S	.	.	133	7	74	0	C|0.932;T|0.068	24
IDUA	3425	bcgsc.ca	37	4	994452	994452	+	Silent	SNP	C	C	T	rs3755954	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IDUA	NM_000203	exon3	c.C352T	p.L118L	.	.	181	10	44	0	C|0.784;T|0.216	91
IFI27	3429	bcgsc.ca	37	14	94582821	94582821	+	Missense_Mutation	SNP	C	C	T	rs2227974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFI27	NM_005532	exon5	c.C317T	p.S106F	.	.	197	15	45	0	C|0.927;T|0.073	90
IFI44L	10964	bcgsc.ca	37	1	79095526	79095526	+	Missense_Mutation	SNP	G	G	A	rs3820093	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFI44L	NM_006820	exon4	c.G649A	p.V217I	.	.	112	7	96	0	G|0.884;A|0.116	90
IFIH1	64135	bcgsc.ca	37	2	163124619	163124619	+	Missense_Mutation	SNP	C	C	T	rs140562355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFIH1	NM_022168	exon14	c.G2785A	p.V929I	.	.	330	16	134	1	C|0.998;T|0.002	91
IFIH1	64135	bcgsc.ca	37	2	163128883	163128883	+	Silent	SNP	G	G	A	rs13418718	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFIH1	NM_022168	exon13	c.C2469T	p.A823A	.	.	242	14	104	0	G|0.888;A|0.112	91
IFIH1	64135	bcgsc.ca	37	2	163137983	163137983	+	Missense_Mutation	SNP	T	T	C	rs10930046	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFIH1	NM_022168	exon7	c.A1379G	p.H460R	.	.	347	18	136	0	T|0.838;C|0.162	91
IFIT2	3433	bcgsc.ca	37	10	91066460	91066460	+	Silent	SNP	T	T	A	rs954439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFIT2	NM_001547	exon2	c.T747A	p.V249V	.	.	122	5	64	0	T|0.338;A|0.662	92
IFIT3	3437	bcgsc.ca	37	10	91099657	91099657	+	Silent	SNP	A	A	G	rs17119665	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFIT3	NM_001549	exon2	c.A1245G	p.P415P	.	.	157	11	72	0	A|0.925;G|0.075	90
IFITM10	402778	bcgsc.ca	37	11	1756519	1756519	+	Silent	SNP	G	G	A	rs59052475	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001170820	exon3	c.C678T	p.T226T	.	.	42	4	26	0	G|0.984;A|0.016	.
IFNA1	3439	bcgsc.ca	37	9	21440548	21440548	+	Silent	SNP	C	C	T	rs34278127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNA1	NM_024013	exon1	c.C42T	p.L14L	.	.	313	12	132	0	C|0.994;T|0.006	46
IFNA17	3451	bcgsc.ca	37	9	21228016	21228016	+	Silent	SNP	G	G	A	rs17840673	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNA17	NM_021268	exon1	c.C157T	p.L53L	.	.	245	12	176	0	G|0.640;A|0.360	90
IFNA17	3451	bcgsc.ca	37	9	21228040	21228040	+	Missense_Mutation	SNP	C	C	G	rs77929847		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNA17	NM_021268	exon1	c.G133C	p.G45R	.	.	257	12	184	0	.	90
IFNA6	3443	bcgsc.ca	37	9	21350487	21350487	+	Silent	SNP	G	G	A	rs61736258	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNA6	NM_021002	exon1	c.C400T	p.L134L	.	.	307	20	164	0	G|0.971;A|0.029	68
IFNA7	3444	bcgsc.ca	37	9	21201831	21201831	+	Missense_Mutation	SNP	G	G	T	rs28368146		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNA7	NM_021057	exon1	c.C334A	p.L112I	.	.	538	19	299	0	.	90
IFNAR1	3454	bcgsc.ca	37	21	34715699	34715699	+	Missense_Mutation	SNP	G	G	C	rs2257167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNAR1	NM_000629	exon4	c.G502C	p.V168L	.	.	184	10	91	0	G|0.831;C|0.169	91
IFNGR2	3460	bcgsc.ca	37	21	34787312	34787312	+	Missense_Mutation	SNP	A	A	G	rs9808753	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFNGR2	NM_005534	exon2	c.A191G	p.Q64R	.	.	110	6	56	0	A|0.793;G|0.206	186
IFNL1	282618	bcgsc.ca	37	19	39789115	39789115	+	Missense_Mutation	SNP	A	A	G	rs30461	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_172140	exon5	c.A562G	p.N188D	.	.	147	6	57	0	A|0.733;G|0.267	.
IFRD2	7866	bcgsc.ca	37	3	50327429	50327429	+	Silent	SNP	A	A	G	rs2071205	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFRD2	NM_006764	exon5	c.T669C	p.F223F	.	.	155	12	53	0	A|0.797;G|0.203	212
IFT140	9742	bcgsc.ca	37	16	1608082	1608082	+	Silent	SNP	A	A	G	rs2076436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFT140	NM_014714	exon19	c.T2253C	p.P751P	.	.	190	8	40	0	A|0.687;G|0.313	95
IFT27	11020	bcgsc.ca	37	22	37163879	37163879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFT27	NM_001177701	exon2	c.T62C	p.L21P	.	.	196	6	65	1	.	227
IFT43	112752	bcgsc.ca	37	14	76525675	76525675	+	Missense_Mutation	SNP	G	G	A	rs2302858	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFT43	NM_001102564	exon5	c.G254A	p.R85H	.	.	360	11	171	0	G|0.996;A|0.004	90
IFT74	80173	bcgsc.ca	37	9	27009100	27009100	+	Missense_Mutation	SNP	T	T	C	rs17694549	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFT74	NM_001099222	exon9	c.T670C	p.F224L	.	.	359	23	275	0	T|0.943;C|0.057	515
IFT74	80173	bcgsc.ca	37	9	27036487	27036487	+	Missense_Mutation	SNP	C	C	T	rs73643131		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFT74	NM_001099224	exon14	c.C1094T	p.T365I	.	.	108	5	92	0	C|0.990;T|0.010	515
IFT80	57560	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	159995248	159995248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IFT80	NM_020800	exon18	c.A1945T	p.I649F	.	.	339	114	160	0	.	522
IGBP1P1	280655	bcgsc.ca	37	14	35409214	35409214	+	RNA	SNP	T	T	C	rs1967723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	370	11	144	0	T|0.681;C|0.319	.
IGDCC3	9543	hgsc.bcm.edu	37	15	65621283	65621283	+	Silent	SNP	C	C	T	rs146205195	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGDCC3	NM_004884	exon14	c.G2409A	p.A803A	.	.	66	7	24	0	C|0.999;T|0.001	93
IGFBP3	3486	bcgsc.ca	37	7	45956264	45956264	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGFBP3	NM_001013398	exon3	c.T651C	p.G217G	.	.	180	23	66	0	.	1009
IGFN1	91156	bcgsc.ca	37	1	201175254	201175254	+	Silent	SNP	A	A	G	rs184260291	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGFN1	NM_001164586	exon12	c.A1233G	p.K411K	.	.	131	5	57	0	A|0.999;G|0.001	71
IGLL3P	91353	bcgsc.ca	37	22	25715849	25715849	+	RNA	SNP	G	G	A	rs145388427	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGLL3P	.	.	.	.	.	.	230	17	81	0	G|0.994;A|0.006	91
IGSF10	285313	bcgsc.ca	37	3	151163660	151163660	+	Missense_Mutation	SNP	G	G	A	rs34933248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF10	NM_178822	exon4	c.C4109T	p.T1370I	.	.	386	15	216	0	G|0.991;A|0.009	102
IGSF10	285313	bcgsc.ca	37	3	151164891	151164891	+	Missense_Mutation	SNP	C	C	G	rs35983399	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF10	NM_178822	exon4	c.G2878C	p.E960Q	.	.	603	22	234	0	C|0.731;G|0.269	102
IGSF10	285313	bcgsc.ca	37	3	151171491	151171491	+	Silent	SNP	T	T	C	rs79231031	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF10	NM_178822	exon3	c.A396G	p.T132T	.	.	223	10	99	0	T|0.988;C|0.012	102
IGSF11	152404	bcgsc.ca	37	3	118649107	118649107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF11	NM_001015887	exon2	c.T68C	p.L23P	.	.	93	5	42	0	.	90
IGSF1	3547	bcgsc.ca	37	X	130408745	130408745	+	Silent	SNP	G	G	A	rs6529473	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF1	NM_001170961	exon18	c.C3594T	p.V1198V	.	.	174	7	47	0	0|0.003;A|0.363	133
IGSF1	3547	bcgsc.ca	37	X	130410965	130410965	+	Silent	SNP	A	A	G	rs4830219	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF1	NM_001170961	exon14	c.T2571C	p.Y857Y	.	.	109	10	46	0	A|0.663;0|0.005	133
IGSF22	283284	bcgsc.ca	37	11	18740228	18740228	+	Missense_Mutation	SNP	G	G	T	rs73428416	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF22	NM_173588	exon8	c.C744A	p.D248E	.	.	261	13	91	0	G|0.992;T|0.008	140
IGSF3	3321	bcgsc.ca	37	1	117122130	117122130	+	Missense_Mutation	SNP	T	T	C	rs6703791	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF3	NM_001542	exon11	c.A3278G	p.Q1093R	.	.	63	4	33	0	T|0.725;C|0.275	92
IGSF5	150084	bcgsc.ca	37	21	41137623	41137623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IGSF5	NM_001080444	exon3	c.A262G	p.I88V	.	.	102	5	29	0	.	68
IKBIP	121457	bcgsc.ca	37	12	99007623	99007623	+	Missense_Mutation	SNP	C	C	T	rs1048906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IKBIP	NM_201612	exon3	c.G793A	p.G265S	.	.	306	17	126	0	C|0.626;T|0.374	226
IKBIP	121457	bcgsc.ca	37	12	99020476	99020476	+	Missense_Mutation	SNP	C	C	A	rs12322444	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IKBIP	NM_153687	exon3	c.G366T	p.Q122H	.	.	202	13	86	0	C|0.973;A|0.027	226
IKBKAP	8518	bcgsc.ca	37	9	111641825	111641825	+	Missense_Mutation	SNP	G	G	A	rs1538660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IKBKAP	NM_003640	exon33	c.C3473T	p.P1158L	.	.	199	11	71	0	G|0.772;A|0.228	318
IKBKAP	8518	bcgsc.ca	37	9	111685129	111685129	+	Missense_Mutation	SNP	A	A	T	rs10521092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IKBKAP	NM_003640	exon6	c.T545A	p.M182K	.	.	110	5	87	0	A|0.944;T|0.056	318
IL12RB1	3594	ucsc.edu	37	19	18180451	18180451	+	Missense_Mutation	SNP	A	A	G	rs375947	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL12RB1	NM_005535	exon10	c.T1094C	p.M365T	.	.	67	8	26	0	A|0.702;G|0.298	91
IL12RB2	3595	bcgsc.ca	37	1	67833527	67833527	+	Missense_Mutation	SNP	G	G	C	rs2307145	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL12RB2	NM_001559	exon10	c.G1278C	p.Q426H	.	.	286	13	92	0	G|0.944;C|0.056	92
IL16	3603	bcgsc.ca	37	15	81600947	81600947	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL16	NM_172217	exon18	c.A3807G	p.G1269G	.	.	167	6	51	0	.	653
IL16	3603	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	81572097	81572097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL16	NM_001172128	exon8	c.G1063T	p.E355X	.	.	120	31	47	0	.	653
IL17RB	55540	bcgsc.ca	37	3	53886912	53886912	+	Silent	SNP	C	C	T	rs3733075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL17RB	NM_018725	exon5	c.C369T	p.Y123Y	.	.	282	13	81	0	C|0.603;T|0.397	229
IL17RD	54756	bcgsc.ca	37	3	57138419	57138419	+	Missense_Mutation	SNP	G	G	A	rs6780995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL17RD	NM_017563	exon8	c.C764T	p.T255M	.	.	208	6	55	0	G|0.431;A|0.569	500
IL18RAP	8807	bcgsc.ca	37	2	103039743	103039743	+	Silent	SNP	C	C	T	rs11465687	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL18RAP	NM_003853	exon3	c.C6T	p.L2L	.	.	384	14	196	0	C|0.952;T|0.048	95
IL1R2	7850	bcgsc.ca	37	2	102636274	102636274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL1R2	NM_001261419	exon5	c.A688G	p.K230E	.	.	159	5	62	0	.	522
IL1RL1	9173	bcgsc.ca	37	2	102955468	102955468	+	Missense_Mutation	SNP	C	C	A	rs1041973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL1RL1	NM_016232	exon3	c.C233A	p.A78E	.	.	235	13	90	0	C|0.681;A|0.319	517
IL1RL1	9173	bcgsc.ca	37	2	102968129	102968129	+	Silent	SNP	C	C	T	rs73004242	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL1RL1	NM_016232	exon11	c.C1419T	p.N473N	.	.	156	5	93	0	C|0.965;T|0.035	517
IL1RN	3557	bcgsc.ca	37	2	113890304	113890304	+	Silent	SNP	T	T	C	rs315952	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL1RN	NM_173841	exon6	c.T399C	p.S133S	.	.	173	14	80	0	T|0.641;C|0.359	92
IL20RA	53832	ucsc.edu	37	6	137329854	137329854	+	Silent	SNP	C	C	T	rs9483975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL20RA	NM_014432	exon5	c.G606A	p.T202T	.	.	31	5	12	0	C|0.920;T|0.080	94
IL22RA1	58985	bcgsc.ca	37	1	24448084	24448084	+	Silent	SNP	G	G	A	rs17852648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL22RA1	NM_021258	exon7	c.C936T	p.P312P	.	.	107	7	52	0	G|0.765;A|0.235	91
IL26	55801	bcgsc.ca	37	12	68619450	68619450	+	Silent	SNP	G	G	A	rs11570981	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL26	NM_018402	exon1	c.C87T	p.T29T	.	.	182	6	77	0	G|0.958;A|0.042	90
IL27RA	9466	hgsc.bcm.edu;bcgsc.ca	37	19	14153567	14153567	+	Missense_Mutation	SNP	C	C	T	rs149346880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL27RA	NM_004843	exon6	c.C734T	p.T245M	.	.	412	17	132	0	C|0.998;T|0.002	90
IL2RA	3559	bcgsc.ca	37	10	6067969	6067969	+	Silent	SNP	C	C	T	rs2228150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL2RA	NM_000417	exon2	c.G84A	p.P28P	.	.	426	21	151	0	T|0.065;G|0.221	92
IL31RA	133396	bcgsc.ca	37	5	55168132	55168132	+	Missense_Mutation	SNP	A	A	G	rs59086632	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL31RA	NM_001242637	exon4	c.A307G	p.N103D	.	.	207	10	77	0	A|0.944;G|0.056	91
IL3	3562	ucsc.edu;bcgsc.ca	37	5	131396478	131396478	+	Missense_Mutation	SNP	C	C	T	rs40401	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL3	NM_000588	exon1	c.C79T	p.P27S	.	.	111	14	58	0	C|0.616;N|0.000	92
IL34	146433	bcgsc.ca	37	16	70693551	70693551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL34	NM_152456	exon6	c.G433A	p.V145M	.	.	144	6	36	0	.	91
IL4R	3566	bcgsc.ca	37	16	27374180	27374180	+	Missense_Mutation	SNP	T	T	C	rs1805015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL4R	NM_000418	exon11	c.T1507C	p.S503P	.	.	100	9	27	0	T|0.773;C|0.227	227
IL4R	3566	ucsc.edu	37	16	27374400	27374400	+	Missense_Mutation	SNP	A	A	G	rs1801275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL4R	NM_000418	exon11	c.A1727G	p.Q576R	.	.	44	4	20	0	A|0.641;G|0.358	227
IL6	3569	bcgsc.ca	37	7	22767137	22767137	+	Missense_Mutation	SNP	C	C	T	rs2069830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL6	NM_000600	exon2	c.C94T	p.P32S	.	.	96	5	38	0	C|0.973;T|0.027	514
IL6ST	3572	bcgsc.ca	37	5	55251931	55251931	+	Missense_Mutation	SNP	G	G	C	rs2228043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL6ST	NM_002184	exon10	c.C1189G	p.L397V	.	.	389	15	206	0	G|0.661;C|0.339	290
IL6ST	3572	bcgsc.ca	37	5	55264153	55264153	+	Missense_Mutation	SNP	C	C	G	rs2228044	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL6ST	NM_175767	exon5	c.G442C	p.G148R	.	.	301	12	99	0	C|0.626;G|0.374	290
IL7R	3575	bcgsc.ca	37	5	35871190	35871190	+	Missense_Mutation	SNP	G	G	A	rs1494555	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL7R	NM_002185	exon4	c.G412A	p.V138I	.	.	234	17	77	0	G|0.287;A|0.713	157
IL7R	3575	bcgsc.ca	37	5	35874575	35874575	+	Missense_Mutation	SNP	C	C	T	rs6897932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL7R	NM_002185	exon6	c.C731T	p.T244I	.	.	959	47	412	0	C|0.810;T|0.190	157
IL7R	3575	hgsc.bcm.edu;bcgsc.ca	37	5	35861023	35861023	+	Missense_Mutation	SNP	C	C	T	rs138482569		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IL7R	NM_002185	exon2	c.C152T	p.S51L	.	.	246	11	107	0	C|1.000;T|0.000	157
IMPA1	3612	bcgsc.ca	37	8	82598063	82598063	+	Missense_Mutation	SNP	T	T	C	rs142875760		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IMPA1	NM_001144878	exon2	c.A88G	p.K30E	.	.	696	17	55	0	T|0.994;C|0.006	226
INADL	10207	bcgsc.ca	37	1	62327304	62327304	+	Missense_Mutation	SNP	G	G	C	rs116544267	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INADL	NM_176877	exon19	c.G2404C	p.D802H	.	.	284	9	118	0	G|0.989;C|0.011	94
ING4	51147	bcgsc.ca	37	12	6760367	6760367	+	Silent	SNP	C	C	T	rs76327967	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ING4	NM_001127582	exon8	c.G744A	p.K248K	.	.	214	15	56	0	C|0.923;T|0.077	515
ING5	84289	hgsc.bcm.edu;bcgsc.ca	37	2	242648719	242648719	+	Silent	SNP	G	G	A	rs148010042	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032329	exon3	c.G198A	p.Q66Q	.	.	307	14	93	0	G|0.997;A|0.003	.
INMT	11185	bcgsc.ca	37	7	30795419	30795419	+	Silent	SNP	C	C	T	rs35221354	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INMT	NM_006774	exon3	c.C744T	p.A248A	.	.	113	5	36	0	C|0.947;T|0.053	90
INO80	54617	hgsc.bcm.edu	37	15	41372055	41372055	+	Silent	SNP	G	G	T	rs34467689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INO80	NM_017553	exon9	c.C975A	p.A325A	.	.	180	8	56	0	G|0.988;T|0.012	72
INPP5B	3633	bcgsc.ca	37	1	38329999	38329999	+	Missense_Mutation	SNP	C	C	G	rs41311191	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INPP5B	NM_005540	exon23	c.G2611C	p.D871H	.	.	156	5	72	0	C|0.887;G|0.113	227
INPP5B	3633	bcgsc.ca	37	1	38348506	38348506	+	Silent	SNP	G	G	A	rs41307896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INPP5B	NM_005540	exon14	c.C1404T	p.D468D	.	.	325	14	146	0	G|0.896;A|0.104	227
INPPL1	3636	bcgsc.ca	37	11	71945332	71945332	+	Silent	SNP	A	A	G	rs61736312	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INPPL1	NM_001567	exon20	c.A2220G	p.S740S	.	.	144	10	48	0	A|0.866;G|0.134	660
INPPL1	3636	ucsc.edu;bcgsc.ca	37	11	71941212	71941212	+	Silent	SNP	A	A	G	rs2276048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INPPL1	NM_001567	exon9	c.A987G	p.S329S	.	.	86	13	36	0	G|0.306;A|0.694	660
INSC	387755	bcgsc.ca	37	11	15243190	15243190	+	Silent	SNP	C	C	T	rs61742947	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INSC	NM_001031853	exon8	c.C1128T	p.L376L	.	.	135	13	47	0	C|0.934;T|0.066	94
INSL6	11172	bcgsc.ca	37	9	5185365	5185365	+	Missense_Mutation	SNP	A	A	G	rs2149554	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INSL6	NM_007179	exon1	c.T238C	p.F80L	.	.	131	6	64	0	A|0.897;G|0.103	90
INTS10	55174	bcgsc.ca	37	8	19677915	19677915	+	Silent	SNP	G	G	A	rs7822495	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INTS10	NM_018142	exon4	c.G327A	p.R109R	.	.	102	10	62	0	G|0.763;A|0.237	91
INTS1	26173	bcgsc.ca	37	7	1526291	1526291	+	Silent	SNP	G	G	A	rs9655532		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080453	exon22	c.C2946T	p.S982S	.	.	147	9	56	0	G|0.989;A|0.011	.
INTS1	26173	bcgsc.ca	37	7	1533513	1533513	+	Silent	SNP	A	A	G	rs2251226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080453	exon15	c.T1945C	p.L649L	.	.	153	11	43	0	A|0.379;G|0.621	.
INTS1	26173	bcgsc.ca	37	7	1538117	1538117	+	Silent	SNP	G	G	A	rs189753393		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080453	exon10	c.C1356T	p.S452S	.	.	227	8	84	0	G|0.988;A|0.012	.
INTS9	55756	bcgsc.ca	37	8	28638503	28638503	+	Silent	SNP	C	C	T	rs34731600	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	INTS9	NM_018250	exon12	c.G1107A	p.Q369Q	.	.	50	4	69	0	C|0.988;T|0.012	24
IPO11	51194	bcgsc.ca	37	5	61833098	61833098	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IPO11	NM_001134779	exon24	c.T2352C	p.G784G	.	.	165	5	75	1	.	227
IQCD	115811	hgsc.bcm.edu;bcgsc.ca	37	12	113645566	113645566	+	Missense_Mutation	SNP	G	G	C	rs7966313	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IQCD	NM_138451	exon2	c.C406G	p.L136V	.	.	161	10	64	0	G|0.994;C|0.006	91
IQCE	23288	bcgsc.ca	37	7	2646796	2646796	+	Missense_Mutation	SNP	G	G	A	rs61729413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IQCE	NM_152558	exon21	c.G1904A	p.R635K	.	.	160	6	48	0	G|0.869;A|0.131	226
IQCJ	654502	bcgsc.ca	37	3	158963694	158963694	+	Silent	SNP	A	A	G	rs73031431		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001042705	exon2	c.A72G	p.E24E	.	.	172	8	57	0	A|0.981;G|0.019	.
IQGAP1	8826	bcgsc.ca	37	15	90996467	90996467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IQGAP1	NM_003870	exon13	c.A1430G	p.K477R	.	.	184	6	65	0	.	950
IQGAP1	8826	ucsc.edu;bcgsc.ca	37	15	91010776	91010776	+	Silent	SNP	T	T	C	rs1505936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IQGAP1	NM_003870	exon18	c.T2130C	p.P710P	.	.	116	11	54	0	T|0.557;C|0.442	950
IQGAP3	128239	hgsc.bcm.edu;bcgsc.ca	37	1	156509699	156509699	+	Silent	SNP	A	A	T	rs77494039	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IQGAP3	NM_178229	exon24	c.T2823A	p.G941G	.	.	716	30	188	0	A|0.993;T|0.007	96
IRAK4	51135	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44180295	44180295	+	Missense_Mutation	SNP	G	G	A	rs4251545	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IRAK4	NM_016123	exon11	c.G1282A	p.A428T	.	.	318	32	114	0	G|0.843;A|0.157	1366
IRF2BP1	26145	bcgsc.ca	37	19	46387344	46387344	+	Silent	SNP	G	G	A	rs11550348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IRF2BP1	NM_015649	exon1	c.C1689T	p.F563F	.	.	127	8	33	0	G|0.836;A|0.164	90
IRF8	3394	ucsc.edu;bcgsc.ca	37	16	85945204	85945204	+	Silent	SNP	C	C	T	rs16939941	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IRF8	NM_002163	exon4	c.C387T	p.C129C	.	.	161	14	50	1	C|0.985;T|0.015	154
IRGM	345611	bcgsc.ca	37	5	150227998	150227998	+	Silent	SNP	C	C	T	rs10065172	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145805	exon2	c.C313T	p.L105L	.	.	161	11	47	0	C|0.714;T|0.286	.
IRS1	3667	bcgsc.ca	37	2	227663185	227663185	+	Silent	SNP	G	G	A	rs3731597	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IRS1	NM_005544	exon1	c.C270T	p.D90D	.	.	248	9	50	0	A|0.062;G|0.938	1272
IRX1	79192	hgsc.bcm.edu;bcgsc.ca	37	5	3599680	3599680	+	Silent	SNP	C	C	T	rs61745751	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IRX1	NM_024337	exon2	c.C618T	p.F206F	.	.	160	11	66	0	C|0.999;T|0.001	228
IRX2	153572	bcgsc.ca	37	5	2749785	2749785	+	Silent	SNP	C	C	G	rs61742405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IRX2	NM_001134222	exon2	c.G366C	p.T122T	.	.	336	12	102	0	C|0.984;G|0.016	226
ISG15	9636	bcgsc.ca	37	1	949422	949422	+	Missense_Mutation	SNP	G	G	A	rs143888043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ISG15	NM_005101	exon2	c.G62A	p.S21N	.	.	111	8	47	0	G|0.994;A|0.006	90
ISLR	3671	bcgsc.ca	37	15	74468105	74468105	+	Silent	SNP	G	G	T	rs150921456	byfrequency;alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ISLR	NM_201526	exon2	c.G906T	p.P302P	.	.	77	5	27	0	G|0.994;A|0.006	155
ISLR	3671	hgsc.bcm.edu;bcgsc.ca	37	15	74468009	74468009	+	Silent	SNP	C	C	T	rs115861726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ISLR	NM_201526	exon2	c.C810T	p.H270H	.	.	189	10	46	0	C|0.997;T|0.003	155
ISPD	729920	bcgsc.ca	37	7	16348211	16348211	+	Silent	SNP	T	T	C	rs61746966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ISPD	NM_001101426	exon4	c.A726G	p.Q242Q	.	.	151	8	39	0	T|0.984;C|0.016	23
ISYNA1	51477	bcgsc.ca	37	19	18546678	18546678	+	Silent	SNP	T	T	C	rs2303697	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ISYNA1	NM_016368	exon8	c.A1029G	p.L343L	.	.	178	8	57	0	T|0.535;C|0.465	92
ITGA10	8515	bcgsc.ca	37	1	145536082	145536082	+	Missense_Mutation	SNP	G	G	A	rs2274616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGA10	NM_003637	exon17	c.G2174A	p.R725Q	.	.	202	12	57	0	G|0.869;A|0.131	231
ITGA2	3673	bcgsc.ca	37	5	52351413	52351413	+	Silent	SNP	G	G	A	rs1062535	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGA2	NM_002203	exon8	c.G825A	p.T275T	.	.	170	9	80	0	G|0.627;A|0.373	226
ITGA3	3675	bcgsc.ca	37	17	48149386	48149386	+	Silent	SNP	C	C	T	rs2269772	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGA3	NM_005501	exon7	c.C996T	p.F332F	.	.	151	12	33	0	C|0.807;T|0.193	229
ITGA5	3678	bcgsc.ca	37	12	54795410	54795410	+	Silent	SNP	A	A	G	rs73322228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGA5	NM_002205	exon23	c.T2346C	p.F782F	.	.	143	12	64	0	A|0.960;G|0.040	659
ITGA8	8516	bcgsc.ca	37	10	15646225	15646225	+	Silent	SNP	T	T	C	rs9333166	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGA8	NM_003638	exon20	c.A2100G	p.G700G	.	.	541	13	195	0	T|0.976;C|0.024	230
ITGA9	3680	hgsc.bcm.edu;bcgsc.ca	37	3	37670679	37670679	+	Missense_Mutation	SNP	G	G	A	rs61751189	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGA9	NM_002207	exon16	c.G1691A	p.R564Q	.	.	176	10	83	0	G|0.997;A|0.003	715
ITGAD	3681	hgsc.bcm.edu;bcgsc.ca	37	16	31422071	31422071	+	Missense_Mutation	SNP	C	C	G	rs142278416	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGAD	NM_005353	exon12	c.C1228G	p.L410V	.	.	170	10	53	0	C|0.991;G|0.009	226
ITGAM	3684	bcgsc.ca	37	16	31336888	31336888	+	Missense_Mutation	SNP	C	C	T	rs1143683	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGAM	NM_001145808	exon21	c.C2576T	p.A859V	.	.	101	7	51	1	C|0.870;T|0.130	226
ITGB2	3689	bcgsc.ca	37	21	46313442	46313442	+	Silent	SNP	G	G	T	rs2230529	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGB2	NM_000211	exon10	c.C1101A	p.V367V	.	.	387	18	105	1	G|0.775;T|0.225	717
ITGB5	3693	bcgsc.ca	37	3	124492734	124492734	+	Silent	SNP	T	T	C	rs16835978	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITGB5	NM_002213	exon11	c.A1719G	p.E573E	.	.	136	6	29	0	T|0.943;C|0.057	227
ITIH1	3697	bcgsc.ca	37	3	52821011	52821011	+	Missense_Mutation	SNP	A	A	G	rs1042779	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH1	NM_002215	exon14	c.A1784G	p.Q595R	.	.	161	7	55	0	A|0.564;G|0.436	93
ITIH3	3699	bcgsc.ca	37	3	52830764	52830764	+	Silent	SNP	C	C	T	rs2240921	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH3	NM_002217	exon4	c.C291T	p.D97D	.	.	272	20	67	0	C|0.866;T|0.134	93
ITIH3	3699	bcgsc.ca	37	3	52840325	52840325	+	Silent	SNP	C	C	T	rs34397833	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH3	NM_002217	exon18	c.C1959T	p.H653H	.	.	127	9	27	0	C|0.971;T|0.029	93
ITIH3	3699	bcgsc.ca	37	3	52842597	52842597	+	Missense_Mutation	SNP	C	C	T	rs2710329	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH3	NM_002217	exon22	c.C2573T	p.A858V	.	.	183	9	62	0	C|0.955;T|0.045	93
ITIH4	3700	bcgsc.ca	37	3	52852488	52852488	+	Missense_Mutation	SNP	C	C	G	rs2256734	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH4	NM_002218	exon18	c.G2142C	p.M714I	.	.	227	11	60	0	C|0.869;G|0.131	46
ITIH5	80760	bcgsc.ca	37	10	7605067	7605067	+	Missense_Mutation	SNP	C	C	T	rs3824658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH5	NM_030569	exon15	c.G2807A	p.R936Q	.	.	189	15	48	0	C|0.373;T|0.627	92
ITIH5	80760	bcgsc.ca	37	10	7658059	7658059	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITIH5	NM_001001851	exon7	c.T825C	p.V275V	.	.	159	5	98	0	.	92
ITLN2	142683	bcgsc.ca	37	1	160920414	160920414	+	Missense_Mutation	SNP	C	C	T	rs75880837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITLN2	NM_080878	exon5	c.G529A	p.A177T	.	.	239	14	62	0	C|0.966;T|0.034	91
ITPR1	3708	bcgsc.ca	37	3	4716811	4716811	+	Silent	SNP	A	A	C	rs2306877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR1	NM_001099952	exon23	c.A2658C	p.L886L	.	.	262	14	79	0	A|0.703;C|0.297	710
ITPR1	3708	bcgsc.ca	37	3	4744600	4744600	+	Silent	SNP	C	C	T	rs34748547		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR1	NM_001099952	exon36	c.C4596T	p.S1532S	.	.	204	8	68	0	C|0.990;T|0.010	710
ITPR1	3708	bcgsc.ca	37	3	4829732	4829732	+	Silent	SNP	A	A	G	rs13079522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR1	NM_001168272	exon51	c.A6672G	p.T2224T	.	.	257	11	149	0	A|0.754;G|0.246	710
ITPR2	3709	bcgsc.ca	37	12	26639155	26639155	+	Missense_Mutation	SNP	G	G	A	rs2230382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR2	NM_002223	exon41	c.C5693T	p.A1898V	.	.	1027	29	333	1	G|0.969;A|0.031	542
ITPR2	3709	bcgsc.ca	37	12	26784850	26784850	+	Silent	SNP	G	G	A	rs2230372	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR2	NM_002223	exon22	c.C2883T	p.H961H	.	.	225	14	51	0	G|0.527;A|0.473	542
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26809429	26809429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR2	NM_002223	exon19	c.A2245G	p.I749V	.	.	77	26	40	0	.	542
ITPR3	3710	bcgsc.ca	37	6	33643558	33643558	+	Silent	SNP	G	G	A	rs2229637	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ITPR3	NM_002224	exon25	c.G3207A	p.P1069P	.	.	125	9	27	0	G|0.786;A|0.214	1085
IVL	3713	bcgsc.ca	37	1	152883680	152883680	+	Silent	SNP	A	A	G	rs7535306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	IVL	NM_005547	exon2	c.A1407G	p.Q469Q	.	.	181	6	79	0	A|0.667;G|0.333	93
JAK1	3716	bcgsc.ca	37	1	65311262	65311262	+	Silent	SNP	G	G	A	rs2230587	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JAK1	NM_002227	exon15	c.C2049T	p.S683S	.	.	149	13	80	0	G|0.823;A|0.177	3900
JAKMIP1	152789	bcgsc.ca	37	4	6083345	6083345	+	Silent	SNP	G	G	A	rs61731760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JAKMIP1	NM_001099433	exon6	c.C1092T	p.N364N	.	.	230	11	61	0	G|0.981;A|0.019	292
JAKMIP2	9832	bcgsc.ca	37	5	147024476	147024476	+	Silent	SNP	C	C	A	rs2116766	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JAKMIP2	NM_001270941	exon6	c.G1020T	p.L340L	.	.	398	20	173	0	C|0.788;A|0.212	154
JAKMIP2	9832	bcgsc.ca	37	5	147024509	147024509	+	Silent	SNP	C	C	T	rs2116765	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JAKMIP2	NM_001270941	exon6	c.G987A	p.R329R	.	.	375	14	171	0	C|0.697;T|0.303	154
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139797347	139797347	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JHDM1D	NM_030647	exon15	c.C2014T	p.L672L	.	.	188	79	42	0	.	91
JKAMP	51528	bcgsc.ca	37	14	59961931	59961931	+	Silent	SNP	C	C	T	rs17096302	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JKAMP	NM_016475	exon4	c.C447T	p.A149A	.	.	261	19	152	0	C|0.985;T|0.015	67
JKAMP	51528	bcgsc.ca	37	14	59965448	59965448	+	Silent	SNP	T	T	C	rs73303685		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JKAMP	NM_016475	exon5	c.T462C	p.Y154Y	.	.	114	8	63	0	T|0.989;C|0.011	67
JMJD1C	221037	bcgsc.ca	37	10	64927823	64927823	+	Missense_Mutation	SNP	C	C	G	rs1935	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JMJD1C	NM_032776	exon26	c.G7605C	p.E2535D	.	.	186	8	96	0	C|0.467;G|0.533	275
JMJD7-PLA2G4B	8681	bcgsc.ca	37	15	42139634	42139634	+	Missense_Mutation	SNP	A	A	C	rs140993094	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JMJD7-PLA2G4B	NM_005090	exon24	c.A2740C	p.T914P	.	.	156	11	35	0	A|0.994;C|0.006	135
JMY	133746	bcgsc.ca	37	5	78596056	78596056	+	Silent	SNP	G	G	A	rs34032465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JMY	NM_152405	exon5	c.G1608A	p.Q536Q	.	.	130	7	54	0	G|0.981;A|0.019	227
JMY	133746	bcgsc.ca	37	5	78610174	78610174	+	Missense_Mutation	SNP	A	A	G	rs16876657	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JMY	NM_152405	exon9	c.A2159G	p.H720R	.	.	150	10	74	0	A|0.926;G|0.074	227
JOSD1	9929	bcgsc.ca	37	22	39095987	39095987	+	Silent	SNP	A	A	G	rs2072800	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JOSD1	NM_014876	exon1	c.T6C	p.S2S	.	.	475	11	139	1	A|0.927;G|0.073	522
JUP	3728	bcgsc.ca	37	17	39923673	39923673	+	Silent	SNP	G	G	A	rs2230407	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	JUP	NM_021991	exon5	c.C867T	p.T289T	.	.	188	8	52	0	T|0.007;G|0.654;C|0.329;A|0.010	479
KANK1	23189	bcgsc.ca	37	9	713307	713307	+	Silent	SNP	A	A	G	rs4742277	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KANK1	NM_001256876	exon7	c.A2541G	p.E847E	.	.	118	5	39	0	A|0.953;G|0.047	517
KANK1	23189	bcgsc.ca	37	9	730054	730054	+	Missense_Mutation	SNP	A	A	G	rs12352313	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KANK1	NM_001256876	exon8	c.A2702G	p.N901S	.	.	205	12	61	0	A|0.864;G|0.136	517
KANK1	23189	ucsc.edu;bcgsc.ca	37	9	712674	712674	+	Silent	SNP	C	C	T	rs79835909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KANK1	NM_001256876	exon7	c.C1908T	p.D636D	.	.	83	9	49	0	C|0.960;T|0.040	517
KARS	3735	hgsc.bcm.edu;bcgsc.ca	37	16	75662488	75662488	+	Silent	SNP	G	G	A	rs143267922	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KARS	NM_001130089	exon14	c.C1758T	p.L586L	.	.	245	17	85	0	G|0.998;A|0.002	92
KAT5	10524	bcgsc.ca	37	11	65480256	65480256	+	Silent	SNP	C	C	T	rs4645914	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KAT5	NM_182710	exon2	c.C198T	p.S66S	.	.	228	12	67	0	C|0.979;T|0.021	90
KAT6A	7994	bcgsc.ca	37	8	41794934	41794934	+	Silent	SNP	C	C	T	rs13748	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001099412	exon17	c.G3192A	p.T1064T	.	.	348	17	170	0	C|0.720;T|0.280	.
KATNA1	11104	bcgsc.ca	37	6	149953915	149953915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KATNA1	NM_007044	exon3	c.G300T	p.M100I	.	.	210	7	64	0	.	91
KAZN	23254	bcgsc.ca	37	1	15382607	15382607	+	Silent	SNP	G	G	A	rs79632856	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KAZN	NM_015209	exon5	c.G747A	p.T249T	.	.	318	15	91	1	G|0.949;A|0.051	91
KCNAB1	7881	bcgsc.ca	37	3	156249214	156249214	+	Silent	SNP	T	T	C	rs2280031	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNAB1	NM_172160	exon13	c.T1098C	p.N366N	.	.	155	11	36	0	T|0.756;C|0.244	94
KCNG4	93107	bcgsc.ca	37	16	84256619	84256619	+	Missense_Mutation	SNP	C	C	T	rs17736370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNG4	NM_172347	exon3	c.G764A	p.C255Y	.	.	88	5	37	0	C|0.912;T|0.088	93
KCNIP4	80333	ucsc.edu;bcgsc.ca	37	4	20852244	20852244	+	Silent	SNP	A	A	G	rs3765122	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNIP4	NM_025221	exon2	c.T150C	p.P50P	.	.	69	8	50	0	A|0.672;G|0.328	91
KCNJ2	3759	bcgsc.ca	37	17	68172326	68172326	+	Silent	SNP	C	C	T	rs173135	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNJ2	NM_000891	exon2	c.C1146T	p.L382L	.	.	128	5	69	0	C|0.867;T|0.133	90
KCNJ4	3761	bcgsc.ca	37	22	38823136	38823136	+	Silent	SNP	T	T	C	rs196059	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNJ4	NM_004981	exon2	c.A1002G	p.S334S	.	.	103	6	35	0	T|0.265;C|0.735	90
KCNK10	54207	bcgsc.ca	37	14	88651962	88651962	+	Missense_Mutation	SNP	C	C	T	rs17762463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNK10	NM_138318	exon7	c.G1549A	p.A517T	.	.	652	20	230	2	C|0.833;T|0.167	95
KCNK16	83795	bcgsc.ca	37	6	39282806	39282806	+	Missense_Mutation	SNP	G	G	T	rs11756091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNK16	NM_032115	exon6	c.C902A	p.P301H	.	.	242	17	71	0	G|0.400;T|0.600	229
KCNK7	10089	hgsc.bcm.edu	37	11	65363063	65363063	+	Missense_Mutation	SNP	C	C	T	rs78680181	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNK7	NM_005714	exon1	c.G181A	p.G61R	.	.	61	5	19	0	C|0.981;T|0.019	90
KCNQ4	9132	bcgsc.ca	37	1	41285585	41285585	+	Silent	SNP	G	G	A	rs12117176	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNQ4	NM_004700	exon6	c.G873A	p.P291P	.	.	228	9	79	0	G|0.918;A|0.082	90
KCNQ4	9132	bcgsc.ca	37	1	41285591	41285591	+	Silent	SNP	A	A	G	rs12143503	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNQ4	NM_004700	exon6	c.A879G	p.T293T	.	.	228	9	79	0	A|0.918;G|0.082	90
KCNQ4	9132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	41283901	41283901	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNQ4	NM_004700	exon3	c.C471T	p.C157C	.	.	77	33	22	0	.	90
KCNT1	57582	bcgsc.ca	37	9	138651648	138651648	+	Silent	SNP	A	A	G	rs61739517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNT1	NM_020822	exon11	c.A978G	p.P326P	.	.	155	12	58	0	A|0.967;G|0.033	137
KCNU1	157855	bcgsc.ca	37	8	36767024	36767024	+	Missense_Mutation	SNP	T	T	C	rs28608091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNU1	NM_001031836	exon21	c.T2302C	p.W768R	.	.	95	7	63	0	T|0.628;C|0.372	23
KCNV2	169522	bcgsc.ca	37	9	2729686	2729686	+	Missense_Mutation	SNP	C	C	G	rs12352254	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCNV2	NM_133497	exon2	c.C1597G	p.L533V	.	.	75	9	43	0	C|0.857;G|0.143	515
KCTD16	57528	hgsc.bcm.edu;bcgsc.ca	37	5	143853518	143853518	+	Silent	SNP	G	G	A	rs147489800	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCTD16	NM_020768	exon4	c.G1128A	p.S376S	.	.	236	14	105	0	G|0.979;A|0.021	137
KCTD20	222658	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36446975	36446975	+	Missense_Mutation	SNP	G	G	C	rs2239808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KCTD20	NM_173562	exon4	c.G512C	p.S171T	.	.	342	34	127	0	G|0.619;C|0.381	92
KDELC1	79070	bcgsc.ca	37	13	103449202	103449202	+	Missense_Mutation	SNP	T	T	C	rs1047740	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KDELC1	NM_024089	exon2	c.A340G	p.I114V	.	.	247	12	106	0	T|0.602;C|0.398	91
KDM3B	51780	hgsc.bcm.edu;bcgsc.ca	37	5	137754798	137754798	+	Missense_Mutation	SNP	G	G	T	rs28561931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KDM3B	NM_016604	exon14	c.G3592T	p.A1198S	.	.	251	14	109	0	G|0.990;T|0.010	542
KDM4C	23081	bcgsc.ca	37	9	7103816	7103816	+	Silent	SNP	C	C	T	rs3763651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KDM4C	NM_001146694	exon18	c.C2556T	p.D852D	.	.	149	10	57	0	C|0.456;T|0.544	228
KDM4C	23081	bcgsc.ca	37	9	7170006	7170006	+	Missense_Mutation	SNP	G	G	A	rs7022348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KDM4C	NM_001146694	exon21	c.G3110A	p.S1037N	.	.	108	7	88	0	G|0.846;A|0.154	228
KDM8	79831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27221810	27221810	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145348	exon2	c.C480G	p.V160V	.	.	59	15	17	0	.	.
KEL	3792	bcgsc.ca	37	7	142640004	142640004	+	Silent	SNP	T	T	C	rs8176039	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KEL	NM_000420	exon17	c.A1899G	p.L633L	.	.	152	5	58	0	A|0.170;C|0.052;G|0.024;T|0.754	93
KHDRBS2	202559	bcgsc.ca	37	6	62390916	62390916	+	Silent	SNP	T	T	C	rs1204114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KHDRBS2	NM_152688	exon9	c.A1002G	p.Q334Q	.	.	324	22	98	0	T|0.399;C|0.601	272
KIAA0196	9897	bcgsc.ca	37	8	126085555	126085555	+	Silent	SNP	A	A	G	rs138358896		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0196	NM_014846	exon9	c.T990C	p.Y330Y	.	.	420	12	74	0	A|1.000;G|0.000	92
KIAA0226	9711	bcgsc.ca	37	3	197427706	197427706	+	Missense_Mutation	SNP	C	C	T	rs61746429	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0226	NM_014687	exon7	c.G1039A	p.E347K	.	.	159	7	63	0	C|0.981;T|0.019	22
KIAA0226L	80183	bcgsc.ca	37	13	46946157	46946157	+	Missense_Mutation	SNP	C	C	T	rs1408184	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025113	exon3	c.G454A	p.G152R	.	.	222	15	98	0	T|0.325;G|0.122	.
KIAA0355	9710	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34843761	34843761	+	Silent	SNP	C	C	A	rs397414	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0355	NM_014686	exon14	c.C3114A	p.P1038P	.	.	112	18	55	0	C|0.379;A|0.621	91
KIAA0408	9729	bcgsc.ca	37	6	127767568	127767568	+	Silent	SNP	C	C	T	rs17054684	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0408	NM_014702	exon5	c.G1896A	p.P632P	.	.	224	11	71	0	C|0.980;T|0.020	90
KIAA0408	9729	bcgsc.ca	37	6	127767904	127767904	+	Silent	SNP	T	T	A	rs17054687	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0408	NM_014702	exon5	c.A1560T	p.L520L	.	.	388	19	161	0	T|0.970;A|0.030	90
KIAA0556	23247	bcgsc.ca	37	16	27660031	27660031	+	Missense_Mutation	SNP	A	A	G	rs61738361	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0556	NM_015202	exon6	c.A515G	p.N172S	.	.	240	13	78	0	A|0.978;G|0.022	141
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58923453	58923453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0586	NM_001244189	exon12	c.A1446C	p.K482N	.	.	314	105	99	0	.	23
KIAA0753	9851	bcgsc.ca	37	17	6515387	6515387	+	Missense_Mutation	SNP	A	A	G	rs2289642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0753	NM_014804	exon8	c.T1397C	p.L466P	.	.	314	20	150	0	A|0.341;G|0.659	90
KIAA0753	9851	bcgsc.ca	37	17	6531648	6531648	+	Silent	SNP	A	A	G	rs2072149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0753	NM_014804	exon3	c.T507C	p.S169S	.	.	537	33	231	1	A|0.331;G|0.669	90
KIAA0922	23240	bcgsc.ca	37	4	154478222	154478222	+	Silent	SNP	C	C	T	rs10001845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0922	NM_001131007	exon6	c.C537T	p.V179V	.	.	466	12	180	1	C|0.657;T|0.343	92
KIAA0947	23379	bcgsc.ca	37	5	5461233	5461233	+	Missense_Mutation	SNP	A	A	G	rs10475299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA0947	NM_015325	exon13	c.A1786G	p.K596E	.	.	194	7	99	0	A|0.933;G|0.067	48
KIAA1009	22832	bcgsc.ca	37	6	84862740	84862740	+	Silent	SNP	A	A	C	rs150355382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1009	NM_014895	exon23	c.T3153G	p.V1051V	.	.	533	16	234	0	A|0.995;C|0.005	91
KIAA1009	22832	bcgsc.ca	37	6	84862742	84862742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1009	NM_014895	exon23	c.G3151A	p.V1051I	.	.	543	19	233	0	.	91
KIAA1024	23251	bcgsc.ca	37	15	79748603	79748603	+	Silent	SNP	C	C	T	rs7183867	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1024	NM_015206	exon2	c.C114T	p.F38F	.	.	140	9	67	0	C|0.813;T|0.187	183
KIAA1109	84162	bcgsc.ca	37	4	123150286	123150286	+	Missense_Mutation	SNP	T	T	C	rs6848868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1109	NM_015312	exon23	c.T2933C	p.I978T	.	.	400	14	205	0	T|0.937;C|0.063	80
KIAA1109	84162	bcgsc.ca	37	4	123168361	123168361	+	Silent	SNP	A	A	G	rs73844502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1109	NM_015312	exon33	c.A5361G	p.S1787S	.	.	216	6	86	0	A|0.982;G|0.018	80
KIAA1109	84162	bcgsc.ca	37	4	123176375	123176375	+	Silent	SNP	A	A	G	rs28520439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1109	NM_015312	exon38	c.A6315G	p.L2105L	.	.	470	13	209	0	A|0.962;G|0.038	80
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123159290	123159290	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1109	NM_015312	exon26	c.A3618T	p.S1206S	.	.	240	76	120	0	.	80
KIAA1199	57214	bcgsc.ca	37	15	81172064	81172064	+	Silent	SNP	G	G	A	rs35541581	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1199	NM_018689	exon4	c.G249A	p.L83L	.	.	142	11	50	0	G|0.928;A|0.072	93
KIAA1210	57481	bcgsc.ca	37	X	118219347	118219347	+	Missense_Mutation	SNP	T	T	C	rs2305570	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1210	NM_020721	exon12	c.A4847G	p.E1616G	.	.	147	17	83	0	T|0.349;0|0.031	67
KIAA1210	57481	bcgsc.ca	37	X	118220676	118220676	+	Missense_Mutation	SNP	C	C	T	rs201623740		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1210	NM_020721	exon11	c.G4517A	p.G1506D	.	.	147	8	57	0	.	67
KIAA1210	57481	bcgsc.ca	37	X	118220720	118220720	+	Silent	SNP	A	A	G	rs3813932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1210	NM_020721	exon11	c.T4473C	p.S1491S	.	.	167	11	65	0	0|0.031;T|0.293	67
KIAA1210	57481	bcgsc.ca	37	X	118222360	118222360	+	Missense_Mutation	SNP	T	T	A	rs3761592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1210	NM_020721	exon11	c.A2833T	p.I945F	.	.	131	10	37	0	T|0.376;0|0.048	67
KIAA1239	57495	bcgsc.ca	37	4	37446874	37446874	+	Silent	SNP	C	C	T	rs76049455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001144990	exon7	c.C3264T	p.Y1088Y	.	.	277	7	70	0	C|0.969;T|0.031	.
KIAA1239	57495	bcgsc.ca	37	4	37448299	37448299	+	Silent	SNP	C	C	T	rs17422084	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001144990	exon7	c.C4689T	p.A1563A	.	.	156	6	122	0	C|0.962;T|0.038	.
KIAA1244	57221	ucsc.edu	37	6	138608016	138608016	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1244	NM_020340	exon16	c.C2748T	p.D916D	.	.	48	5	24	0	.	228
KIAA1324	57535	bcgsc.ca	37	1	109656946	109656946	+	Silent	SNP	T	T	C	rs667524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1324	NM_020775	exon1	c.T141C	p.H47H	.	.	159	8	67	0	T|0.512;C|0.488	157
KIAA1328	57536	bcgsc.ca	37	18	34647176	34647176	+	Silent	SNP	T	T	C	rs3747895	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1328	NM_020776	exon7	c.T900C	p.P300P	.	.	220	8	87	0	T|0.748;C|0.252	90
KIAA1328	57536	bcgsc.ca	37	18	34647323	34647323	+	Silent	SNP	T	T	A	rs3747896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1328	NM_020776	exon7	c.T1047A	p.G349G	.	.	371	13	78	0	A|0.238;G|0.031;T|0.731	90
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	5753230	5753231	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1432	NM_001206557	exon13	c.1483_1484del	p.495_495del	.	.	754	165	332	0	.	90
KIAA1456	57604	bcgsc.ca	37	8	12879198	12879198	+	Missense_Mutation	SNP	A	A	T	rs34995506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1456	NM_020844	exon5	c.A1010T	p.H337L	.	.	41	7	59	0	A|0.391;T|0.609	90
KIAA1467	57613	bcgsc.ca	37	12	13219605	13219605	+	Missense_Mutation	SNP	G	G	A	rs62636619	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1467	NM_020853	exon6	c.G884A	p.R295Q	.	.	350	12	127	0	G|0.955;A|0.045	92
KIAA1468	57614	bcgsc.ca	37	18	59878443	59878443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1468	NM_020854	exon2	c.A584G	p.D195G	.	.	51	4	34	0	.	158
KIAA1524	57650	bcgsc.ca	37	3	108279609	108279609	+	Missense_Mutation	SNP	A	A	C	rs34172460	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1524	NM_020890	exon14	c.T1714G	p.S572A	.	.	871	28	343	0	A|0.955;C|0.045	92
KIAA1524	57650	bcgsc.ca	37	3	108298447	108298447	+	Missense_Mutation	SNP	G	G	A	rs77545973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1524	NM_020890	exon6	c.C638T	p.S213F	.	.	370	14	185	0	G|0.984;A|0.016	92
KIAA1549	57670	bcgsc.ca	37	7	138554343	138554343	+	Silent	SNP	G	G	A	rs28523576	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1549	NM_020910	exon14	c.C4716T	p.I1572I	.	.	124	5	31	0	G|0.995;A|0.005	369
KIAA1549	57670	ucsc.edu;bcgsc.ca	37	7	138602417	138602417	+	Missense_Mutation	SNP	G	G	A	rs2774960	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1549	NM_020910	exon2	c.C1955T	p.P652L	.	.	68	8	39	0	G|0.595;A|0.405	369
KIAA1609	57707	bcgsc.ca	37	16	84516309	84516309	+	Silent	SNP	G	G	A	rs433293	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1609	NM_020947	exon6	c.C966T	p.N322N	.	.	259	16	132	0	G|0.625;A|0.375	92
KIAA1609	57707	bcgsc.ca	37	16	84520325	84520325	+	Silent	SNP	T	T	C	rs431389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1609	NM_020947	exon5	c.A870G	p.G290G	.	.	116	6	53	0	T|0.484;C|0.516	92
KIAA1609	57707	bcgsc.ca	37	16	84522897	84522897	+	Missense_Mutation	SNP	G	G	C	rs436278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1609	NM_020947	exon4	c.C516G	p.D172E	.	.	73	7	37	0	G|0.511;C|0.489	92
KIAA1683	80726	bcgsc.ca	37	19	18376509	18376509	+	Missense_Mutation	SNP	G	G	A	rs16982285	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1683	NM_001145304	exon3	c.C1841T	p.A614V	.	.	199	12	80	0	G|0.854;A|0.146	92
KIAA1683	80726	bcgsc.ca	37	19	18376780	18376780	+	Missense_Mutation	SNP	T	T	C	rs12462974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1683	NM_001145304	exon3	c.A1570G	p.T524A	.	.	167	9	34	0	T|0.861;C|0.139	92
KIAA1731	85459	bcgsc.ca	37	11	93462895	93462895	+	Silent	SNP	T	T	C	rs115546583	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1731	NM_033395	exon27	c.T7515C	p.I2505I	.	.	92	5	54	0	T|0.991;C|0.009	22
KIAA1751	85452	bcgsc.ca	37	1	1896440	1896440	+	Silent	SNP	G	G	A	rs16824585	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1751	NM_001080484	exon13	c.C1462T	p.L488L	.	.	130	5	30	0	G|0.764;A|0.236	69
KIAA1751	85452	bcgsc.ca	37	1	1902225	1902225	+	Missense_Mutation	SNP	G	G	A	rs140201417		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1751	NM_001080484	exon10	c.C919T	p.R307C	.	.	205	10	45	0	G|0.996;A|0.004	69
KIAA1804	0	hgsc.bcm.edu;bcgsc.ca	37	1	233512273	233512273	+	Missense_Mutation	SNP	G	G	A	rs138394059	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1804	NM_032435	exon8	c.G1924A	p.G642R	.	.	225	20	84	0	G|0.998;A|0.002	523
KIAA1804	0	bcgsc.ca	37	1	233489682	233489682	+	Silent	SNP	G	G	A	rs56268427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1804	NM_032435	exon3	c.G1116A	p.P372P	.	.	270	10	71	0	G|0.951;A|0.049	523
KIAA1841	84542	bcgsc.ca	37	2	61315565	61315565	+	Silent	SNP	T	T	C	rs7563415	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1841	NM_032506	exon10	c.T1050C	p.N350N	.	.	404	12	167	0	T|0.927;C|0.073	90
KIAA1841	84542	bcgsc.ca	37	2	61361296	61361296	+	Missense_Mutation	SNP	G	G	A	rs13424173	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIAA1841	NM_032506	exon21	c.G2053A	p.G685S	.	.	206	10	125	1	G|0.969;A|0.031	90
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	8872078	8872078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIDINS220	NM_020738	exon30	c.T4088G	p.L1363R	.	.	119	44	59	0	.	93
KIF11	3832	bcgsc.ca	37	10	94392326	94392326	+	Missense_Mutation	SNP	C	C	A	rs112145870	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF11	NM_004523	exon13	c.C1578A	p.H526Q	.	.	85	6	56	0	C|0.996;A|0.004	227
KIF13A	63971	bcgsc.ca	37	6	17764731	17764731	+	Silent	SNP	G	G	C	rs6459569	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF13A	NM_022113	exon39	c.C5028G	p.A1676A	.	.	246	14	86	0	G|0.857;C|0.143	137
KIF13A	63971	hgsc.bcm.edu	37	6	17779907	17779907	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF13A	NM_001105566	exon32	c.G3855A	p.T1285T	.	.	195	9	93	0	.	137
KIF13B	23303	bcgsc.ca	37	8	28974364	28974364	+	Missense_Mutation	SNP	T	T	C	rs36068949		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF13B	NM_015254	exon31	c.A3821G	p.N1274S	.	.	113	7	45	0	T|0.996;C|0.004	22
KIF14	9928	bcgsc.ca	37	1	200528567	200528567	+	Missense_Mutation	SNP	T	T	A	rs74368765	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF14	NM_014875	exon27	c.A4244T	p.D1415V	.	.	362	15	141	0	T|0.985;A|0.015	140
KIF14	9928	bcgsc.ca	37	1	200534248	200534248	+	Silent	SNP	C	C	T	rs7543730	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF14	NM_014875	exon25	c.G4020A	p.E1340E	.	.	372	12	161	0	C|0.449;T|0.551	140
KIF15	56992	bcgsc.ca	37	3	44893342	44893342	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF15	NM_020242	exon33	c.A3870G	p.E1290E	.	.	211	7	133	0	.	91
KIF17	57576	ucsc.edu;bcgsc.ca	37	1	21011346	21011346	+	Silent	SNP	A	A	G	rs12028811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF17	NM_020816	exon10	c.T2187C	p.T729T	.	.	110	12	61	0	A|0.831;G|0.169	94
KIF18A	81930	bcgsc.ca	37	11	28057957	28057957	+	Missense_Mutation	SNP	T	T	C	rs10458896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF18A	NM_031217	exon14	c.A2203G	p.I735V	.	.	401	22	176	1	C|0.398;N|0.000	92
KIF1A	547	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241713646	241713646	+	Silent	SNP	A	A	G	rs1063353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF1A	NM_001244008	exon12	c.T991C	p.L331L	.	.	142	23	54	0	A|0.529;G|0.471	91
KIF20B	9585	bcgsc.ca	37	10	91484780	91484780	+	Silent	SNP	G	G	A	rs8181361	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon15	c.G1866A	p.E622E	.	.	157	7	56	0	G|0.688;A|0.312	93
KIF20B	9585	bcgsc.ca	37	10	91497631	91497631	+	Missense_Mutation	SNP	T	T	A	rs1062465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon20	c.T2913A	p.D971E	.	.	180	17	77	0	T|0.696;A|0.304	93
KIF20B	9585	bcgsc.ca	37	10	91498127	91498127	+	Missense_Mutation	SNP	T	T	C	rs1886996	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon20	c.T3409C	p.C1137R	.	.	234	10	162	0	T|0.224;C|0.776	93
KIF20B	9585	bcgsc.ca	37	10	91498254	91498254	+	Missense_Mutation	SNP	A	A	G	rs1886997	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon20	c.A3536G	p.N1179S	.	.	237	13	139	0	A|0.698;G|0.302	93
KIF20B	9585	bcgsc.ca	37	10	91498318	91498318	+	Silent	SNP	A	A	G	rs1886998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon20	c.A3600G	p.K1200K	.	.	137	8	75	0	A|0.706;G|0.294	93
KIF20B	9585	bcgsc.ca	37	10	91503660	91503660	+	Silent	SNP	A	A	G	rs1126480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon22	c.A3891G	p.K1297K	.	.	354	27	173	0	A|0.701;G|0.299	93
KIF20B	9585	bcgsc.ca	37	10	91518638	91518638	+	Missense_Mutation	SNP	T	T	C	rs34785987	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF20B	NM_016195	exon27	c.T4559C	p.I1520T	.	.	232	10	130	0	T|0.955;C|0.045	93
KIF21A	55605	ucsc.edu;bcgsc.ca	37	12	39726858	39726858	+	Missense_Mutation	SNP	T	T	C	rs78917178		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF21A	NM_001173464	exon19	c.A2539G	p.K847E	.	.	82	15	45	2	.	97
KIF24	347240	bcgsc.ca	37	9	34255823	34255823	+	Missense_Mutation	SNP	C	C	G	rs76716576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF24	NM_194313	exon11	c.G3782C	p.R1261T	.	.	300	11	108	0	C|0.968;G|0.032	22
KIF26A	26153	bcgsc.ca	37	14	104638926	104638926	+	Silent	SNP	G	G	A	rs2275595	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF26A	NM_015656	exon7	c.G1341A	p.S447S	.	.	159	14	36	0	G|0.932;A|0.068	24
KIF2B	84643	bcgsc.ca	37	17	51901246	51901246	+	Silent	SNP	C	C	T	rs9913268	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF2B	NM_032559	exon1	c.C852T	p.A284A	.	.	100	5	46	0	C|0.953;T|0.047	98
KIF2B	84643	bcgsc.ca	37	17	51901537	51901537	+	Silent	SNP	T	T	C	rs73989592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF2B	NM_032559	exon1	c.T1143C	p.N381N	.	.	323	10	146	0	T|0.958;C|0.042	98
KIF2B	84643	bcgsc.ca	37	17	51901553	51901553	+	Missense_Mutation	SNP	G	G	A	rs73989593	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF2B	NM_032559	exon1	c.G1159A	p.V387I	.	.	370	12	155	0	G|0.958;A|0.042	98
KIF2C	11004	bcgsc.ca	37	1	45218895	45218895	+	Silent	SNP	A	A	T	rs3795713	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF2C	NM_006845	exon6	c.A531T	p.R177R	.	.	128	6	62	0	A|0.740;T|0.260	228
KIF3C	3797	bcgsc.ca	37	2	26203407	26203407	+	Silent	SNP	G	G	A	rs80296895	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF3C	NM_002254	exon1	c.C1380T	p.Y460Y	.	.	194	8	67	0	G|0.982;A|0.018	94
KIF5C	3800	bcgsc.ca	37	2	149799216	149799216	+	Silent	SNP	T	T	C	rs61734995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF5C	NM_004522	exon7	c.T531C	p.P177P	.	.	152	5	62	0	T|0.859;C|0.141	69
KIF5C	3800	bcgsc.ca	37	2	149806388	149806388	+	Silent	SNP	C	C	T	rs60169973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF5C	NM_004522	exon9	c.C750T	p.D250D	.	.	192	9	92	0	C|0.884;T|0.116	69
KIF7	374654	bcgsc.ca	37	15	90185557	90185557	+	Silent	SNP	G	G	A	rs35451920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIF7	NM_198525	exon11	c.C2271T	p.A757A	.	.	97	6	31	0	G|0.990;A|0.010	523
KIR3DL3	115653	bcgsc.ca	37	19	55246739	55246739	+	Silent	SNP	C	C	T	rs78691806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIR3DL3	NM_153443	exon6	c.C969T	p.H323H	.	.	396	23	144	0	C|0.929;T|0.071	46
KIRREL2	84063	bcgsc.ca	37	19	36349752	36349752	+	Missense_Mutation	SNP	G	G	A	rs404299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIRREL2	NM_199180	exon4	c.G508A	p.A170T	.	.	331	31	86	0	G|0.863;A|0.137	93
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55569945	55569945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KIT	NM_000222	exon5	c.G812C	p.R271P	.	.	317	124	132	0	.	20166
KLC4	89953	bcgsc.ca	37	6	43034850	43034850	+	Missense_Mutation	SNP	C	C	T	rs4714660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLC4	NM_138343	exon6	c.C908T	p.T303M	.	.	177	10	56	0	C|0.869;T|0.131	94
KLF16	83855	bcgsc.ca	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLF16	NM_031918	exon2	c.T660C	p.P220P	.	.	12	3	18	0	A|0.591;G|0.409	90
KLHDC2	23588	bcgsc.ca	37	14	50245161	50245161	+	Silent	SNP	T	T	C	rs35029396	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHDC2	NM_014315	exon6	c.T582C	p.H194H	.	.	189	11	85	0	T|0.973;C|0.027	91
KLHDC7A	127707	bcgsc.ca	37	1	18807536	18807536	+	Missense_Mutation	SNP	G	G	T	rs7512414	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHDC7A	NM_152375	exon1	c.G61T	p.V21L	.	.	206	8	90	0	G|0.888;T|0.112	93
KLHDC7A	127707	bcgsc.ca	37	1	18807620	18807620	+	Missense_Mutation	SNP	G	G	C	rs34109355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHDC7A	NM_152375	exon1	c.G145C	p.G49R	.	.	102	5	44	0	G|0.899;C|0.101	93
KLHDC8A	55220	ucsc.edu	37	1	205308335	205308335	+	Silent	SNP	G	G	A	rs1105385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHDC8A	NM_018203	exon4	c.C744T	p.F248F	.	.	37	6	17	0	A|0.232;C|0.004	91
KLHDC8A	55220	ucsc.edu;bcgsc.ca	37	1	205308368	205308368	+	Silent	SNP	C	C	T	rs1105387	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHDC8A	NM_018203	exon4	c.G711A	p.R237R	.	.	53	8	32	0	C|0.754;T|0.246	91
KLHL13	90293	bcgsc.ca	37	X	117053499	117053499	+	Silent	SNP	C	C	T	rs6645994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL13	NM_001168299	exon5	c.G564A	p.V188V	.	.	247	11	112	0	C|0.688;0|0.003	556
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	117033084	117033084	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL13	NM_001168299	exon8	c.C1764T	p.F588F	.	.	185	16	79	0	.	556
KLHL20	27252	bcgsc.ca	37	1	173725101	173725101	+	Silent	SNP	G	G	A	rs16846395	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL20	NM_014458	exon6	c.G891A	p.P297P	.	.	128	9	68	0	G|0.899;A|0.101	187
KLHL20	27252	bcgsc.ca;mdanderson.org	37	1	173735378	173735378	+	Silent	SNP	T	T	C	rs7536773	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL20	NM_014458	exon8	c.T1245C	p.L415L	.	.	730	66	214	0	T|0.875;C|0.125	187
KLHL22	84861	bcgsc.ca	37	22	20843378	20843378	+	Silent	SNP	G	G	A	rs9623846	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL22	NM_032775	exon2	c.C121T	p.L41L	.	.	106	5	54	0	G|0.981;A|0.019	278
KLHL24	54800	bcgsc.ca	37	3	183368216	183368216	+	Silent	SNP	A	A	T	rs3755648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL24	NM_017644	exon3	c.A72T	p.R24R	.	.	160	8	114	0	A|0.575;T|0.425	91
KLHL24	54800	bcgsc.ca	37	3	183368891	183368891	+	Silent	SNP	C	C	T	rs2293031	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL24	NM_017644	exon3	c.C747T	p.H249H	.	.	298	9	98	1	C|0.626;T|0.374	91
KLHL32	114792	bcgsc.ca	37	6	97512577	97512577	+	Missense_Mutation	SNP	A	A	G	rs2294763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL32	NM_052904	exon5	c.A386G	p.N129S	.	.	190	9	60	0	A|0.940;G|0.060	94
KLHL40	131377	hgsc.bcm.edu;bcgsc.ca	37	3	42729685	42729685	+	Missense_Mutation	SNP	C	C	T	rs149076152		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152393	exon2	c.C1204T	p.R402C	.	.	211	9	56	0	C|1.000;T|0.000	.
KLHL4	56062	bcgsc.ca	37	X	86877348	86877348	+	Silent	SNP	G	G	T	rs2273050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLHL4	NM_019117	exon5	c.G1062T	p.G354G	.	.	413	29	104	0	G|0.807;T|0.193	133
KLK1	3816	bcgsc.ca	37	19	51323473	51323473	+	Missense_Mutation	SNP	C	C	G	rs5516	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLK1	NM_002257	exon3	c.G433C	p.E145Q	.	.	224	7	72	0	C|0.432;G|0.568	226
KLK1	3816	bcgsc.ca	37	19	51323501	51323501	+	Silent	SNP	A	A	G	rs1054713	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLK1	NM_002257	exon3	c.T405C	p.D135D	.	.	311	11	82	0	A|0.298;G|0.702	226
KLK2	3817	bcgsc.ca	37	19	51381777	51381777	+	Missense_Mutation	SNP	C	C	T	rs198977	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLK2	NM_005551	exon5	c.C748T	p.R250W	.	.	167	11	65	0	C|0.708;T|0.292	227
KLK4	9622	bcgsc.ca	37	19	51412010	51412010	+	Silent	SNP	G	G	A	rs198966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLK4	NM_004917	exon3	c.C300T	p.S100S	.	.	140	10	32	0	G|0.953;A|0.047	226
KLK4	9622	bcgsc.ca	37	19	51412668	51412668	+	Missense_Mutation	SNP	A	A	C	rs1654551	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLK4	NM_004917	exon2	c.T64G	p.S22A	.	.	138	12	36	0	A|0.876;C|0.124	226
KLKB1	3818	bcgsc.ca	37	4	187153432	187153432	+	Missense_Mutation	SNP	C	C	A	rs142462112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLKB1	NM_000892	exon3	c.C210A	p.D70E	.	.	272	8	121	0	C|0.999;A|0.001	227
KLKB1	3818	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187158034	187158034	+	Missense_Mutation	SNP	G	G	A	rs3733402	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KLKB1	NM_000892	exon5	c.G428A	p.S143N	.	.	209	24	99	0	A|0.593;G|0.407	227
KNG1	3827	bcgsc.ca	37	3	186459927	186459927	+	Missense_Mutation	SNP	T	T	C	rs710446	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KNG1	NM_001102416	exon10	c.T1742C	p.I581T	.	.	238	17	129	0	T|0.355;G|0.163	92
KNTC1	9735	bcgsc.ca	37	12	123070310	123070310	+	Missense_Mutation	SNP	T	T	C	rs150106151		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KNTC1	NM_014708	exon37	c.T3662C	p.V1221A	.	.	655	24	228	1	T|0.998;C|0.002	543
KPNA2	3838	bcgsc.ca	37	17	66040175	66040175	+	Silent	SNP	T	T	C	rs1136739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KPNA2	NM_002266	exon8	c.T1152C	p.S384S	.	.	194	10	94	0	T|0.956;C|0.044	560
KPNA3	3839	bcgsc.ca	37	13	50283819	50283819	+	Silent	SNP	T	T	C	rs17073322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KPNA3	NM_002267	exon12	c.A921G	p.A307A	.	.	178	9	86	0	T|0.881;C|0.119	226
KRAS	3845	bcgsc.ca	37	12	25362777	25362777	+	Silent	SNP	A	A	G	rs1137282	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRAS	NM_004985	exon5	c.T519C	p.D173D	.	.	257	13	104	0	T|0.304;G|0.120;C|0.061;A|0.514	92875
KRBA2	124751	bcgsc.ca	37	17	8273654	8273654	+	Missense_Mutation	SNP	G	G	A	rs74532943	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRBA2	NM_213597	exon2	c.C277T	p.P93S	.	.	328	15	145	0	G|0.969;A|0.031	68
KRIT1	889	bcgsc.ca	37	7	91842554	91842554	+	Silent	SNP	T	T	C	rs11542682	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRIT1	NM_194456	exon18	c.A1980G	p.V660V	.	.	207	8	59	0	T|0.867;C|0.133	132
KRR1	11103	bcgsc.ca	37	12	75893688	75893688	+	Silent	SNP	C	C	T	rs77063640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRR1	NM_007043	exon10	c.G1047A	p.K349K	.	.	257	10	85	0	C|0.997;T|0.003	92
KRT14	3861	bcgsc.ca	37	17	39740629	39740629	+	Silent	SNP	T	T	C	rs75795684	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT14	NM_000526	exon3	c.A645G	p.E215E	.	.	227	7	71	0	T|0.960;C|0.040	91
KRT15	3866	bcgsc.ca	37	17	39674641	39674641	+	Missense_Mutation	SNP	T	T	C	rs1050784	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT15	NM_002275	exon1	c.A439G	p.T147A	.	.	313	20	92	0	T|0.341;C|0.659	90
KRT17	3872	bcgsc.ca	37	17	39780673	39780673	+	Missense_Mutation	SNP	C	C	G	rs2229512	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT17	NM_000422	exon1	c.G89C	p.R30P	.	.	166	12	81	0	T|0.025;G|0.075;C|0.900	92
KRT23	25984	bcgsc.ca	37	17	39081713	39081713	+	Silent	SNP	A	A	G	rs8037	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT23	NM_015515	exon7	c.T1035C	p.H345H	.	.	490	23	144	1	A|0.500;G|0.500	91
KRT23	25984	bcgsc.ca	37	17	39084504	39084504	+	Missense_Mutation	SNP	T	T	C	rs9257	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT23	NM_015515	exon6	c.A907G	p.T303A	.	.	297	18	66	0	T|0.484;C|0.516	91
KRT32	3882	bcgsc.ca	37	17	39619115	39619115	+	Missense_Mutation	SNP	G	G	A	rs2071563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT32	NM_002278	exon6	c.C1184T	p.T395M	.	.	153	12	34	0	G|0.611;A|0.389	90
KRT35	3886	ucsc.edu;bcgsc.ca	37	17	39637244	39637244	+	Missense_Mutation	SNP	A	A	G	rs743686	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT35	NM_002280	exon1	c.T106C	p.S36P	.	.	34	7	22	0	A|0.453;G|0.547	92
KRT39	390792	bcgsc.ca	37	17	39122797	39122797	+	Silent	SNP	G	G	A	rs10491137	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_213656	exon1	c.C312T	p.N104N	.	.	597	19	159	1	G|0.826;A|0.174	.
KRT40	125115	bcgsc.ca	37	17	39135084	39135084	+	Missense_Mutation	SNP	A	A	G	rs8064733	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon8	c.T1168C	p.W390R	.	.	99	8	32	0	A|0.654;G|0.346	.
KRT40	125115	bcgsc.ca	37	17	39135205	39135205	+	Silent	SNP	A	A	G	rs8064910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon8	c.T1047C	p.C349C	.	.	213	18	65	0	A|0.340;G|0.660	.
KRT40	125115	bcgsc.ca	37	17	39137387	39137387	+	Missense_Mutation	SNP	C	C	T	rs2010027	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon6	c.G704A	p.R235H	.	.	108	7	44	0	C|0.658;T|0.342	.
KRT40	125115	bcgsc.ca	37	17	39139370	39139370	+	Missense_Mutation	SNP	G	G	A	rs9908304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon4	c.C458T	p.T153M	.	.	129	5	56	0	G|0.630;A|0.370	.
KRT40	125115	bcgsc.ca	37	17	39140138	39140138	+	Missense_Mutation	SNP	G	G	A	rs143255129		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon3	c.C388T	p.P130S	.	.	311	12	92	1	G|0.988;A|0.012	.
KRT40	125115	bcgsc.ca	37	17	39140221	39140221	+	Missense_Mutation	SNP	C	C	T	rs1510068	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon3	c.G305A	p.S102N	.	.	288	13	73	0	C|0.662;T|0.338	.
KRT40	125115	bcgsc.ca	37	17	39140272	39140272	+	Missense_Mutation	SNP	A	A	G	rs17843015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon3	c.T254C	p.F85S	.	.	226	11	72	0	A|0.851;G|0.148	.
KRT40	125115	bcgsc.ca	37	17	39140417	39140417	+	Missense_Mutation	SNP	T	T	C	rs1510069	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182497	exon3	c.A109G	p.T37A	.	.	139	7	41	0	C|0.339;N|0.005	.
KRT5	3852	bcgsc.ca	37	12	52912768	52912768	+	Silent	SNP	C	C	T	rs1132948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT5	NM_000424	exon2	c.G732A	p.L244L	.	.	214	10	59	0	T|0.147;C|0.853	90
KRT5	3852	ucsc.edu	37	12	52908872	52908872	+	Missense_Mutation	SNP	C	C	T	rs11549949	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT5	NM_000424	exon9	c.G1627A	p.G543S	.	.	76	7	23	0	T|0.105;G|0.273;C|0.580;A|0.042	90
KRT6A	3853	bcgsc.ca	37	12	52886478	52886478	+	Silent	SNP	T	T	C	rs376545	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6A	NM_005554	exon1	c.A495G	p.E165E	.	.	448	15	181	0	T|0.627;C|0.373	27
KRT6A	3853	bcgsc.ca	37	12	52886911	52886911	+	Missense_Mutation	SNP	T	T	C	rs61741601	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6A	NM_005554	exon1	c.A62G	p.N21S	.	.	170	9	84	0	T|0.417;C|0.583	27
KRT6B	3854	bcgsc.ca	37	12	52841765	52841765	+	Silent	SNP	G	G	A	rs388626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6B	NM_005555	exon7	c.C1221T	p.A407A	.	.	239	17	62	0	G|0.488;A|0.512	92
KRT6B	3854	bcgsc.ca	37	12	52844265	52844265	+	Missense_Mutation	SNP	T	T	C	rs652423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6B	NM_005555	exon2	c.A680G	p.N227S	.	.	396	18	106	0	T|0.378;C|0.622	92
KRT6B	3854	bcgsc.ca	37	12	52845435	52845435	+	Missense_Mutation	SNP	C	C	T	rs80158424		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6B	NM_005555	exon1	c.G428A	p.S143N	.	.	532	30	230	0	.	92
KRT6C	286887	bcgsc.ca	37	12	52863564	52863564	+	Silent	SNP	C	C	T	rs3894847	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6C	NM_173086	exon7	c.G1314A	p.K438K	.	.	309	28	66	0	C|0.788;T|0.212	114
KRT6C	286887	bcgsc.ca	37	12	52865924	52865924	+	Silent	SNP	G	G	A	rs77218649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT6C	NM_173086	exon2	c.C681T	p.S227S	.	.	349	12	116	0	G|0.976;A|0.024	114
KRT71	112802	bcgsc.ca	37	12	52946498	52946498	+	Missense_Mutation	SNP	C	C	T	rs665470	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT71	NM_033448	exon1	c.G364A	p.E122K	.	.	296	8	102	0	C|0.774;N|0.000	92
KRT71	112802	bcgsc.ca	37	12	52946543	52946543	+	Missense_Mutation	SNP	C	C	T	rs665522	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT71	NM_033448	exon1	c.G319A	p.V107I	.	.	199	9	72	0	C|0.784;T|0.216	92
KRT72	140807	bcgsc.ca	37	12	52994896	52994896	+	Missense_Mutation	SNP	A	A	G	rs56207115	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT72	NM_001146225	exon1	c.T341C	p.M114T	.	.	187	9	74	0	A|0.918;G|0.082	96
KRT73	319101	bcgsc.ca	37	12	53010024	53010024	+	Silent	SNP	C	C	T	rs61736101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT73	NM_175068	exon2	c.G588A	p.T196T	.	.	331	13	95	0	C|0.917;T|0.083	157
KRT75	9119	bcgsc.ca	37	12	52825363	52825363	+	Silent	SNP	G	G	A	rs1798640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT75	NM_004693	exon4	c.C834T	p.P278P	.	.	196	13	70	0	G|0.370;A|0.630	90
KRT75	9119	bcgsc.ca	37	12	52827740	52827740	+	Missense_Mutation	SNP	G	G	C	rs2232386	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT75	NM_004693	exon1	c.C349G	p.P117A	.	.	321	9	76	0	G|0.701;C|0.299	90
KRT75	9119	bcgsc.ca	37	12	52827818	52827818	+	Missense_Mutation	SNP	T	T	C	rs298109	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT75	NM_004693	exon1	c.A271G	p.R91G	.	.	143	12	49	0	T|0.298;G|0.139	90
KRT77	374454	bcgsc.ca	37	12	53096894	53096894	+	Missense_Mutation	SNP	C	C	T	rs78374723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT77	NM_175078	exon1	c.G325A	p.G109R	.	.	156	6	66	0	C|0.971;T|0.029	187
KRT78	196374	bcgsc.ca	37	12	53233688	53233688	+	Silent	SNP	G	G	A	rs61764060	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT78	NM_173352	exon7	c.C1128T	p.D376D	.	.	168	7	50	0	G|0.973;A|0.027	188
KRT78	196374	bcgsc.ca	37	12	53240025	53240025	+	Missense_Mutation	SNP	C	C	T	rs10876360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT78	NM_173352	exon4	c.G712A	p.A238T	.	.	138	10	39	0	C|0.848;T|0.152	188
KRT78	196374	bcgsc.ca	37	12	53242389	53242389	+	Missense_Mutation	SNP	G	G	A	rs116117459	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT78	NM_173352	exon1	c.C326T	p.T109M	.	.	290	17	77	0	G|0.982;A|0.018	188
KRT78	196374	ucsc.edu	37	12	53240584	53240584	+	Silent	SNP	A	A	G	rs2682342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT78	NM_173352	exon3	c.T624C	p.R208R	.	.	62	6	16	0	A|0.737;G|0.263	188
KRT8	3856	ucsc.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT8	NM_001256282	exon2	c.C151T	p.R51C	.	.	62	6	24	0	G|0.944;A|0.055	92
KRT84	3890	bcgsc.ca	37	12	52774158	52774158	+	Silent	SNP	G	G	A	rs951772	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT84	NM_033045	exon7	c.C1413T	p.G471G	.	.	116	9	44	0	G|0.688;A|0.312	91
KRT84	3890	bcgsc.ca	37	12	52777439	52777439	+	Silent	SNP	A	A	G	rs1614888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT84	NM_033045	exon2	c.T690C	p.S230S	.	.	189	11	63	0	A|0.686;G|0.314	91
KRT84	3890	bcgsc.ca	37	12	52777502	52777502	+	Silent	SNP	A	A	G	rs1945297	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT84	NM_033045	exon2	c.T627C	p.N209N	.	.	246	9	77	0	A|0.586;G|0.414	91
KRT84	3890	bcgsc.ca	37	12	52777513	52777513	+	Missense_Mutation	SNP	T	T	C	rs2245203	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT84	NM_033045	exon2	c.A616G	p.I206V	.	.	234	8	72	0	T|0.684;C|0.316	91
KRT86	3892	bcgsc.ca	37	12	52699548	52699548	+	Silent	SNP	T	T	C	rs2032360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRT86	NM_002284	exon6	c.T1002C	p.A334A	.	.	190	15	62	0	T|0.624;C|0.371	91
KRTAP10-10	353333	bcgsc.ca	37	21	46057582	46057582	+	Missense_Mutation	SNP	A	A	C	rs76743925	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-10	NM_181688	exon1	c.A248C	p.D83A	.	.	274	12	76	0	A|0.984;C|0.016	90
KRTAP10-12	386685	bcgsc.ca	37	21	46117608	46117608	+	Silent	SNP	T	T	C	rs59935070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-12	NM_198699	exon1	c.T492C	p.P164P	.	.	376	15	95	0	T|0.976;C|0.024	90
KRTAP10-1	386677	bcgsc.ca	37	21	45959773	45959773	+	Silent	SNP	C	C	T	rs79593866		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-1	NM_198691	exon1	c.G261A	p.P87P	.	.	235	11	83	3	.	91
KRTAP10-3	386682	bcgsc.ca	37	21	45978587	45978587	+	Silent	SNP	A	A	G	rs67272426	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-3	NM_198696	exon1	c.T12C	p.S4S	.	.	329	14	69	0	AGACAT|0.500;GGACGC|0.500	91
KRTAP10-3	386682	bcgsc.ca	37	21	45978592	45978592	+	Missense_Mutation	SNP	T	T	C	rs452472	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-3	NM_198696	exon1	c.A7G	p.T3A	.	.	319	13	67	1	T|0.734;C|0.266	91
KRTAP10-6	386674	bcgsc.ca	37	21	46011679	46011679	+	Silent	SNP	G	G	A	rs75339536		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-6	NM_198688	exon1	c.C687T	p.C229C	.	.	535	78	132	1	G|0.970;A|0.030	90
KRTAP10-6	386674	ucsc.edu	37	21	46011717	46011717	+	Missense_Mutation	SNP	T	T	C	rs9980630		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-6	NM_198688	exon1	c.A649G	p.T217A	.	.	493	101	137	5	T|0.954;C|0.046	90
KRTAP10-8	386681	bcgsc.ca	37	21	46032768	46032768	+	Missense_Mutation	SNP	C	C	T	rs116506540	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP10-8	NM_198695	exon1	c.C751T	p.R251C	.	.	140	9	66	0	C|0.982;T|0.018	153
KRTAP1-1	81851	bcgsc.ca	37	17	39197638	39197638	+	Silent	SNP	A	A	G	rs112542604		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_030967	exon1	c.T12C	p.C4C	.	.	395	18	218	0	A|0.889;G|0.111	.
KRTAP21-3	100288323	bcgsc.ca	37	21	32090908	32090908	+	Missense_Mutation	SNP	C	C	T	rs2833031	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001164435	exon1	c.G170A	p.C57Y	.	.	270	19	180	0	C|0.760;T|0.240	.
KRTAP4-1	85285	bcgsc.ca	37	17	39340707	39340707	+	Missense_Mutation	SNP	C	C	T	rs398825	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_033060	exon2	c.G343A	p.A115T	.	.	219	13	92	2	C|0.062;T|0.938	.
KRTAP4-1	85285	bcgsc.ca	37	17	39341158	39341158	+	Missense_Mutation	SNP	G	G	A	rs452531	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	550	37	201	1	G|0.061;A|0.939	.
KRTAP4-1	85285	bcgsc.ca;mdanderson.org	37	17	39341266	39341266	+	Missense_Mutation	SNP	A	A	G	rs449817	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	598	48	182	0	A|0.061;G|0.939	.
KRTAP4-2	85291	ucsc.edu;bcgsc.ca	37	17	39334133	39334133	+	Missense_Mutation	SNP	T	T	C	rs389784	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP4-2	NM_033062	exon1	c.A284G	p.Y95C	.	.	94	14	50	0	T|0.058;C|0.942	44
KRTAP4-5	85289	ucsc.edu;bcgsc.ca	37	17	39305956	39305956	+	Missense_Mutation	SNP	G	G	A	rs1497383	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP4-5	NM_033188	exon1	c.C64T	p.R22C	.	.	181	17	114	0	G|0.555;A|0.445	90
KRTAP5-10	387273	bcgsc.ca	37	11	71276879	71276879	+	Silent	SNP	G	G	T	rs111331435	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP5-10	NM_001012710	exon1	c.G246T	p.G82G	.	.	167	14	68	2	G|0.500;A|0.500	91
KRTAP5-1	387264	hgsc.bcm.edu;bcgsc.ca	37	11	1606280	1606280	+	Missense_Mutation	SNP	C	C	G	rs139668171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP5-1	NM_001005922	exon1	c.G200C	p.G67A	.	.	264	11	102	0	C|0.994;G|0.006	44
KRTAP9-1	728318	bcgsc.ca	37	17	39346518	39346518	+	Missense_Mutation	SNP	T	T	C	rs238824	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001190460	exon1	c.T380C	p.I127T	.	.	202	16	62	0	T|0.060;C|0.940	.
KRTAP9-2	83899	ucsc.edu;bcgsc.ca	37	17	39383073	39383073	+	Missense_Mutation	SNP	G	G	C	rs9902235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP9-2	NM_031961	exon1	c.G167C	p.C56S	.	.	75	9	31	0	G|0.300;C|0.700	23
KRTAP9-4	85280	bcgsc.ca	37	17	39406409	39406409	+	Missense_Mutation	SNP	C	C	A	rs2191379	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTAP9-4	NM_033191	exon1	c.C437A	p.S146Y	.	.	532	40	177	0	C|0.335;A|0.665	44
KRTCAP3	200634	bcgsc.ca	37	2	27666025	27666025	+	Missense_Mutation	SNP	A	A	G	rs116380288	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	KRTCAP3	NM_173853	exon4	c.A358G	p.T120A	.	.	206	9	59	0	A|0.997;G|0.003	90
L1TD1	54596	bcgsc.ca	37	1	62675709	62675709	+	Silent	SNP	T	T	C	rs7551777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	L1TD1	NM_001164835	exon5	c.T1263C	p.A421A	.	.	100	5	73	0	T|0.881;C|0.119	92
LAMA1	284217	bcgsc.ca	37	18	6978345	6978345	+	Silent	SNP	G	G	A	rs9955616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA1	NM_005559	exon43	c.C6040T	p.L2014L	.	.	133	7	47	0	G|0.914;A|0.086	149
LAMA1	284217	bcgsc.ca	37	18	6985270	6985270	+	Missense_Mutation	SNP	C	C	T	rs11664063	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA1	NM_005559	exon39	c.G5626A	p.A1876T	.	.	189	8	52	0	C|0.823;T|0.177	149
LAMA1	284217	bcgsc.ca	37	18	6986227	6986227	+	Missense_Mutation	SNP	G	G	A	rs12607841	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA1	NM_005559	exon37	c.C5288T	p.A1763V	.	.	280	8	123	1	G|0.855;A|0.145	149
LAMA1	284217	bcgsc.ca	37	18	6993673	6993673	+	Missense_Mutation	SNP	T	T	C	rs62081533	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA1	NM_005559	exon35	c.A4975G	p.I1659V	.	.	287	9	103	0	T|0.834;C|0.166	149
LAMA1	284217	bcgsc.ca	37	18	7026009	7026009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA1	NM_005559	exon17	c.T2371C	p.C791R	.	.	107	7	40	0	.	149
LAMA2	3908	bcgsc.ca	37	6	129807714	129807714	+	Silent	SNP	G	G	A	rs2229850	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA2	NM_000426	exon56	c.G7845A	p.P2615P	.	.	178	6	87	0	A|0.356;G|0.644;T|0.000	162
LAMA3	3909	bcgsc.ca	37	18	21417026	21417026	+	Silent	SNP	C	C	G	rs35756007	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA3	NM_001127717	exon25	c.C3066G	p.L1022L	.	.	274	8	89	0	C|0.973;G|0.027	100
LAMA3	3909	bcgsc.ca	37	18	21469993	21469993	+	Silent	SNP	C	C	T	rs958631	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMA3	NM_001127717	exon42	c.C5322T	p.F1774F	.	.	225	9	68	0	T|0.052;G|0.255;C|0.664;A|0.029	100
LAMB1	3912	bcgsc.ca	37	7	107572775	107572775	+	Silent	SNP	G	G	A	rs76420489	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB1	NM_002291	exon28	c.C4236T	p.G1412G	.	.	103	7	47	0	G|0.988;A|0.012	97
LAMB1	3912	bcgsc.ca	37	7	107591720	107591720	+	Silent	SNP	G	G	A	rs25660	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB1	NM_002291	exon24	c.C3342T	p.C1114C	.	.	107	5	49	0	G|0.956;A|0.044	97
LAMB1	3912	bcgsc.ca	37	7	107601751	107601751	+	Missense_Mutation	SNP	A	A	G	rs20555	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB1	NM_002291	exon17	c.T2009C	p.V670A	.	.	106	5	35	0	A|0.979;G|0.021	97
LAMB3	3914	ucsc.edu;bcgsc.ca	37	1	209799253	209799253	+	Silent	SNP	A	A	G	rs2179402	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB3	NM_000228	exon14	c.T1716C	p.C572C	.	.	91	12	45	1	A|0.245;G|0.755	156
LAMB4	22798	bcgsc.ca	37	7	107671407	107671407	+	Missense_Mutation	SNP	C	C	G	rs2528693	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB4	NM_007356	exon32	c.G4836C	p.R1612S	.	.	290	12	67	1	C|0.891;G|0.109	140
LAMB4	22798	bcgsc.ca	37	7	107677984	107677984	+	Missense_Mutation	SNP	G	G	A	rs1627354	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB4	NM_007356	exon30	c.C4528T	p.H1510Y	.	.	358	29	143	0	G|0.784;A|0.216	140
LAMB4	22798	bcgsc.ca	37	7	107689844	107689844	+	Missense_Mutation	SNP	G	G	T	rs10260756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB4	NM_007356	exon27	c.C4049A	p.T1350N	.	.	335	29	134	0	G|0.820;T|0.180	140
LAMB4	22798	bcgsc.ca	37	7	107696289	107696289	+	Silent	SNP	C	C	T	rs17154865	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB4	NM_007356	exon25	c.G3543A	p.Q1181Q	.	.	149	10	46	0	C|0.806;T|0.194	140
LAMB4	22798	bcgsc.ca	37	7	107745029	107745029	+	Silent	SNP	A	A	G	rs2074748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMB4	NM_007356	exon9	c.T906C	p.D302D	.	.	126	6	36	0	A|0.944;G|0.056	140
LAMC1	3915	bcgsc.ca	37	1	183091289	183091289	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMC1	NM_002293	exon13	c.C2304A	p.S768S	.	.	203	7	71	0	.	252
LAMC1	3915	bcgsc.ca	37	1	183093986	183093986	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMC1	NM_002293	exon14	c.T2622C	p.A874A	.	.	136	5	59	0	.	252
LAMC1	3915	bcgsc.ca	37	1	183105534	183105534	+	Silent	SNP	T	T	C	rs20560	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMC1	NM_002293	exon25	c.T4128C	p.R1376R	.	.	480	19	218	0	T|0.459;C|0.541	252
LAMC1	3915	bcgsc.ca	37	1	183106956	183106956	+	Silent	SNP	A	A	C	rs20564	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMC1	NM_002293	exon26	c.A4467C	p.A1489A	.	.	300	14	146	0	A|0.972;C|0.028	252
LAMP3	27074	bcgsc.ca	37	3	182871667	182871667	+	Missense_Mutation	SNP	G	G	A	rs114567398	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMP3	NM_014398	exon2	c.C562T	p.P188S	.	.	1044	41	335	0	G|0.995;A|0.005	92
LAMP3	27074	bcgsc.ca	37	3	182872168	182872168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAMP3	NM_014398	exon2	c.G61A	p.D21N	.	.	303	10	139	0	.	92
LAMP5	24141	bcgsc.ca	37	20	9496716	9496716	+	Missense_Mutation	SNP	C	C	G	rs2232264	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_012261	exon3	c.C307G	p.Q103E	.	.	158	9	63	0	C|0.731;G|0.269	.
LAT2	7462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73638471	73638471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LAT2	NM_032464	exon12	c.A572G	p.E191G	.	.	103	42	24	0	.	90
LATS2	26524	bcgsc.ca	37	13	21549384	21549384	+	Silent	SNP	G	G	A	rs55869942	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LATS2	NM_014572	exon8	c.C2892T	p.A964A	.	.	112	5	45	0	G|0.938;A|0.062	1404
LBP	3929	ucsc.edu	37	20	36982811	36982811	+	Missense_Mutation	SNP	G	G	A	rs5744204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LBP	NM_004139	exon4	c.G496A	p.V166M	.	.	61	6	13	0	G|0.892;A|0.108	91
LCA5	167691	bcgsc.ca	37	6	80196848	80196848	+	Missense_Mutation	SNP	C	C	T	rs1875845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LCA5	NM_001122769	exon8	c.G1967A	p.G656D	.	.	479	19	165	0	C|0.626;T|0.374	90
LDHAL6B	92483	bcgsc.ca	37	15	59500116	59500116	+	Missense_Mutation	SNP	T	T	C	rs3825937	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LDHAL6B	NM_033195	exon1	c.T977C	p.I326T	.	.	201	6	101	0	T|0.680;C|0.320	226
LDHAL6B	92483	ucsc.edu;bcgsc.ca	37	15	59499274	59499274	+	Silent	SNP	C	C	A	rs3809528	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LDHAL6B	NM_033195	exon1	c.C135A	p.T45T	.	.	112	11	47	0	C|0.586;A|0.414	226
LDHC	3948	bcgsc.ca	37	11	18472528	18472528	+	Missense_Mutation	SNP	G	G	C	rs2230150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LDHC	NM_002301	exon8	c.G853C	p.E285Q	.	.	281	9	118	0	G|0.985;C|0.015	226
LDLRAP1	26119	ucsc.edu	37	1	25890189	25890189	+	Silent	SNP	A	A	G	rs28969504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LDLRAP1	NM_015627	exon7	c.A654G	p.T218T	.	.	56	7	24	0	A|0.383;G|0.617	91
LEFTY1	10637	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226076617	226076617	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LEFTY1	NM_020997	exon1	c.G150A	p.E50E	.	.	149	12	49	0	.	90
LEFTY2	7044	hgsc.bcm.edu;bcgsc.ca	37	1	226125207	226125207	+	Silent	SNP	G	G	A	rs112610798	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LEFTY2	NM_003240	exon4	c.C1035T	p.N345N	.	.	158	9	57	0	G|0.995;A|0.005	90
LEO1	123169	bcgsc.ca	37	15	52254682	52254682	+	Missense_Mutation	SNP	T	T	C	rs116808659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LEO1	NM_138792	exon3	c.A823G	p.R275G	.	.	148	6	28	0	T|0.995;C|0.005	68
LEPR	3953	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	66102224	66102224	+	Silent	SNP	A	A	G	rs6413506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LEPR	NM_002303	exon20	c.A3024G	p.S1008S	.	.	75	12	59	0	A|0.979;G|0.021	91
LGALS14	56891	bcgsc.ca	37	19	40197267	40197267	+	Missense_Mutation	SNP	G	G	A	rs61737337	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LGALS14	NM_203471	exon3	c.G133A	p.V45I	.	.	439	10	141	0	G|0.978;A|0.022	92
LGALS16	148003	bcgsc.ca	37	19	40148584	40148584	+	Missense_Mutation	SNP	T	T	C	rs10403702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001190441	exon2	c.T77C	p.L26P	.	.	150	10	38	0	T|0.912;C|0.088	.
LGALS17A	0	bcgsc.ca	37	19	40174147	40174147	+	RNA	SNP	C	C	T	rs116761286	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	498	20	185	1	C|0.995;T|0.005	.
LGALS8	3964	bcgsc.ca	37	1	236706278	236706278	+	Missense_Mutation	SNP	G	G	T	rs2273863	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LGALS8	NM_006499	exon9	c.G613T	p.D205Y	.	.	244	12	95	1	G|0.892;T|0.108	91
LGI2	55203	bcgsc.ca	37	4	25005193	25005193	+	Silent	SNP	G	G	A	rs2232028	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LGI2	NM_018176	exon8	c.C1518T	p.Y506Y	.	.	259	11	121	0	G|0.332;A|0.668	90
LGI3	203190	bcgsc.ca	37	8	22012105	22012105	+	Silent	SNP	G	G	A	rs138270702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LGI3	NM_139278	exon3	c.C318T	p.N106N	.	.	82	8	43	0	G|0.999;A|0.001	91
LGR5	8549	bcgsc.ca	37	12	71966641	71966641	+	Missense_Mutation	SNP	A	A	G	rs12303775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LGR5	NM_003667	exon13	c.A1148G	p.H383R	.	.	111	7	38	0	A|0.997;G|0.003	527
LIG3	3980	bcgsc.ca	37	17	33329789	33329789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIG3	NM_013975	exon19	c.A2777G	p.E926G	.	.	148	5	55	0	.	728
LIG4	3981	bcgsc.ca	37	13	108861048	108861048	+	Missense_Mutation	SNP	C	C	T	rs2232642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIG4	NM_206937	exon3	c.G2569A	p.A857T	.	.	164	5	90	0	C|0.958;T|0.042	659
LILRA1	11024	bcgsc.ca	37	19	55106317	55106317	+	Silent	SNP	A	A	G	rs10416917	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA1	NM_006863	exon4	c.A258G	p.P86P	.	.	331	10	103	0	A|0.762;G|0.238	93
LILRA1	11024	bcgsc.ca	37	19	55106663	55106663	+	Missense_Mutation	SNP	A	A	G	rs10417589	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA1	NM_006863	exon5	c.A457G	p.S153G	.	.	270	11	86	0	A|0.823;G|0.177	93
LILRA1	11024	bcgsc.ca	37	19	55106778	55106778	+	Missense_Mutation	SNP	G	G	A	rs10418391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA1	NM_006863	exon5	c.G572A	p.R191H	.	.	357	16	116	0	G|0.856;A|0.144	93
LILRA1	11024	bcgsc.ca	37	19	55107704	55107704	+	Missense_Mutation	SNP	G	G	A	rs145746243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA1	NM_006863	exon7	c.G1009A	p.A337T	.	.	214	14	64	0	G|0.989;A|0.011	93
LILRA2	11027	bcgsc.ca	37	19	55086455	55086455	+	Missense_Mutation	SNP	T	T	C	rs138719779	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA2	NM_001130917	exon4	c.T610C	p.Y204H	.	.	469	19	144	1	T|0.992;C|0.008	91
LILRA3	11026	bcgsc.ca	37	19	54802105	54802105	+	Silent	SNP	C	C	T	rs1975046	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA3	NM_006865	exon6	c.G1083A	p.G361G	.	.	108	8	37	0	C|0.794;T|0.206	91
LILRA3	11026	bcgsc.ca	37	19	54802693	54802693	+	Missense_Mutation	SNP	C	C	T	rs73055462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA3	NM_006865	exon5	c.G748A	p.A250T	.	.	157	12	43	0	C|0.945;T|0.055	91
LILRA3	11026	bcgsc.ca	37	19	54803504	54803504	+	Missense_Mutation	SNP	A	A	C	rs6509862	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA3	NM_001172654	exon3	c.T320G	p.L107R	.	.	104	17	45	0	A|0.646;C|0.354	91
LILRA6	79168	bcgsc.ca	37	19	54746081	54746081	+	Missense_Mutation	SNP	T	T	C	rs678876	bycluster;byfrequency;byhapmap	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRA6	NM_024318	exon3	c.A176G	p.Q59R	.	.	1698	82	497	1	T|0.500;C|0.500	24
LILRB1	10859	bcgsc.ca	37	19	55143982	55143982	+	Silent	SNP	T	T	C	rs10427127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB1	NM_001081637	exon6	c.T729C	p.T243T	.	.	370	24	109	1	T|0.900;C|0.100	137
LILRB1	10859	bcgsc.ca	37	19	55145093	55145093	+	Silent	SNP	G	G	C	rs2114511	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB1	NM_001081637	exon8	c.G1266C	p.P422P	.	.	225	10	63	0	G|0.937;C|0.063	137
LILRB1	10859	hgsc.bcm.edu;bcgsc.ca	37	19	55143958	55143958	+	Missense_Mutation	SNP	C	C	G	rs61737863	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB1	NM_001081637	exon6	c.C705G	p.I235M	.	.	376	21	105	0	C|0.989;G|0.011	137
LILRB3	11025	bcgsc.ca	37	19	54726226	54726226	+	Silent	SNP	T	T	C	rs75672336		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon3	c.A279G	p.A93A	.	.	622	79	191	2	C|1.000;|0.000	93
LILRB3	11025	bcgsc.ca	37	19	54726241	54726241	+	Missense_Mutation	SNP	C	C	T	rs77279742	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon3	c.G264A	p.M88I	.	.	723	44	215	0	C|0.581;T|0.419	93
LILRB3	11025	bcgsc.ca	37	19	54726299	54726299	+	Missense_Mutation	SNP	A	A	C	rs80077296		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon3	c.T206G	p.L69W	.	.	958	36	245	0	C|1.000;|0.000	93
LILRB3	11025	bcgsc.ca	37	19	54726833	54726833	+	Missense_Mutation	SNP	T	T	C	rs149695852	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon1	c.A16G	p.T6A	.	.	275	21	84	0	T|0.780;C|0.220	93
LILRB3	11025	bcgsc.ca	37	19	54726843	54726843	+	Silent	SNP	C	C	G	rs138124247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon1	c.G6C	p.T2T	.	.	249	14	85	0	C|0.768;G|0.232	93
LILRB3	11025	bcgsc.ca;mdanderson.org	37	19	54725930	54725930	+	Missense_Mutation	SNP	C	C	T	rs61480095		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon4	c.G428A	p.R143Q	.	.	341	35	103	0	.	93
LILRB3	11025	bcgsc.ca;mdanderson.org	37	19	54726816	54726816	+	Silent	SNP	A	A	T	rs80332440		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon1	c.T33A	p.L11L	.	.	301	30	76	0	.	93
LILRB3	11025	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54725995	54725995	+	Silent	SNP	G	G	A	rs61187720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB3	NM_006864	exon4	c.C363T	p.Y121Y	.	.	170	23	69	0	G|0.298;A|0.702	93
LILRB4	11006	bcgsc.ca	37	19	55175009	55175009	+	Missense_Mutation	SNP	G	G	T	rs11540761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB4	NM_006847	exon2	c.G54T	p.R18S	.	.	286	20	105	0	G|0.810;T|0.190	93
LILRB4	11006	bcgsc.ca	37	19	55179364	55179364	+	Missense_Mutation	SNP	A	A	G	rs1048801	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB4	NM_006847	exon12	c.A1241G	p.Q414R	.	.	286	20	96	0	A|0.608;G|0.392	93
LILRB4	11006	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55178162	55178162	+	Missense_Mutation	SNP	A	A	G	rs11574576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB4	NM_006847	exon10	c.A1003G	p.N335D	.	.	163	22	42	0	A|0.646;C|0.000;G|0.354	93
LILRB5	10990	bcgsc.ca	37	19	54755923	54755923	+	Silent	SNP	A	A	G	rs12976868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LILRB5	NM_001081442	exon12	c.T1623C	p.D541D	.	.	216	11	72	0	A|0.787;G|0.213	92
LIMK2	3985	bcgsc.ca	37	22	31621792	31621792	+	Missense_Mutation	SNP	G	G	A	rs5997917	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIMK2	NM_005569	exon2	c.G103A	p.G35S	.	.	241	12	94	0	G|0.774;A|0.226	548
LINC00115	79854	bcgsc.ca	37	1	762330	762330	+	RNA	SNP	G	G	T	rs74045217	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	236	11	118	0	G|0.946;T|0.054	.
LINC00115	79854	bcgsc.ca	37	1	762345	762345	+	RNA	SNP	A	A	G	rs74045218	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	248	15	127	0	A|0.937;G|0.063	.
LINC00115	79854	bcgsc.ca	37	1	762494	762494	+	RNA	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	444	23	188	0	.	.
LINC00482	284185	ucsc.edu	37	17	79278357	79278357	+	RNA	SNP	C	C	G	rs11871509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	51	6	21	0	C|0.698;G|0.302	.
LINS	55180	hgsc.bcm.edu;bcgsc.ca	37	15	101109598	101109598	+	Missense_Mutation	SNP	C	C	T	rs74039425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LINS	NM_001040616	exon7	c.G2119A	p.G707R	.	.	175	10	82	0	C|0.997;T|0.003	92
LIPC	3990	bcgsc.ca	37	15	58838010	58838010	+	Missense_Mutation	SNP	A	A	G	rs6083	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPC	NM_000236	exon5	c.A644G	p.N215S	.	.	99	9	36	0	A|0.457;G|0.543	91
LIPE	3991	bcgsc.ca	37	19	42930652	42930652	+	Missense_Mutation	SNP	C	C	T	rs3745238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPE	NM_005357	exon1	c.G650A	p.R217Q	.	.	402	14	131	0	C|0.962;T|0.038	154
LIPE	3991	bcgsc.ca	37	19	42930773	42930773	+	Missense_Mutation	SNP	A	A	T	rs16975748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPE	NM_005357	exon1	c.T529A	p.S177T	.	.	387	17	126	0	A|0.962;T|0.038	154
LIPE	3991	bcgsc.ca	37	19	42931004	42931004	+	Missense_Mutation	SNP	A	A	G	rs16975750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPE	NM_005357	exon1	c.T298C	p.Y100H	.	.	787	31	316	1	A|0.915;G|0.085	154
LIPI	149998	bcgsc.ca	37	21	15516948	15516948	+	Missense_Mutation	SNP	C	C	T	rs2822432	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPI	NM_198996	exon9	c.G1354A	p.E452K	.	.	366	21	144	0	C|0.629;T|0.371	70
LIPI	149998	bcgsc.ca	37	21	15537656	15537656	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPI	NM_198996	exon6	c.T852C	p.S284S	.	.	163	5	61	0	.	70
LIPJ	142910	bcgsc.ca	37	10	90353833	90353833	+	Silent	SNP	C	C	T	rs41298235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPJ	NM_001010939	exon5	c.C261T	p.S87S	.	.	392	11	111	0	C|0.982;T|0.018	91
LIPK	643414	bcgsc.ca	37	10	90490921	90490921	+	Silent	SNP	G	G	A	rs412227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPK	NM_001080518	exon3	c.G405A	p.P135P	.	.	122	9	45	0	G|0.756;A|0.244	24
LIPK	643414	bcgsc.ca	37	10	90503075	90503075	+	Silent	SNP	T	T	C	rs390152	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LIPK	NM_001080518	exon8	c.T957C	p.H319H	.	.	206	8	90	0	T|0.755;C|0.245	24
LMAN1L	79748	bcgsc.ca	37	15	75111530	75111530	+	Missense_Mutation	SNP	G	G	A	rs62621375	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMAN1L	NM_021819	exon6	c.G635A	p.G212D	.	.	298	14	61	0	G|0.924;A|0.076	90
LMF1	64788	bcgsc.ca	37	16	1004554	1004554	+	Silent	SNP	C	C	T	rs3751667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMF1	NM_022773	exon2	c.G306A	p.T102T	.	.	104	5	36	0	C|0.674;T|0.326	90
LMF1	64788	hgsc.bcm.edu;bcgsc.ca	37	16	929613	929613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMF1	NM_022773	exon6	c.G854A	p.R285Q	.	.	104	6	45	0	.	90
LMF2	91289	bcgsc.ca	37	22	50944203	50944203	+	Silent	SNP	G	G	A	rs9628197	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMF2	NM_033200	exon6	c.C816T	p.N272N	.	.	188	12	76	0	G|0.949;A|0.051	153
LMOD3	56203	bcgsc.ca	37	3	69168864	69168864	+	Silent	SNP	C	C	T	rs9815992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMOD3	NM_198271	exon2	c.G642A	p.S214S	.	.	717	31	271	0	C|0.932;T|0.068	23
LMX1A	4009	bcgsc.ca	37	1	165175206	165175206	+	Missense_Mutation	SNP	T	T	G	rs148227502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMX1A	NM_001174069	exon8	c.A883C	p.T295P	.	.	148	18	42	0	T|0.999;G|0.001	92
LMX1A	4009	bcgsc.ca	37	1	165218679	165218679	+	Silent	SNP	C	C	T	rs9970062	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LMX1A	NM_001174069	exon4	c.G462A	p.L154L	.	.	156	9	56	0	C|0.721;T|0.279	92
LNP1	348801	bcgsc.ca	37	3	100174722	100174722	+	Silent	SNP	G	G	A	rs1132022	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LNP1	NM_001085451	exon4	c.G489A	p.E163E	.	.	589	23	257	2	G|0.515;A|0.485	22
LOC100133091	0	bcgsc.ca	37	7	76247668	76247668	+	RNA	SNP	G	G	A	rs1636619	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	683	26	217	1	G|0.866;A|0.134	.
LOC100287639	0	bcgsc.ca	37	3	95374182	95374182	+	RNA	SNP	T	T	C	rs6767658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	86	4	39	0	T|0.752;C|0.248	.
LOC100288778	0	ucsc.edu	37	12	90902	90902	+	RNA	SNP	C	C	T	rs138004684	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	167	22	37	0	C|0.688;T|0.312	.
LOC100499484	0	bcgsc.ca	37	9	100054877	100054877	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	110	6	30	0	.	.
LOC100653515	0	bcgsc.ca	37	17	76888041	76888041	+	Missense_Mutation	SNP	T	T	C	rs8077028	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001243540	exon3	c.A545G	p.E182G	.	.	348	14	69	0	T|0.899;C|0.101	.
LOC100873065	0	bcgsc.ca	37	X	23216469	23216469	+	RNA	SNP	A	A	G	rs61756696	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	58	7	27	0	A|0.961;G|0.039	.
LOC100873065	0	bcgsc.ca	37	X	22454307	22454307	+	RNA	SNP	T	T	G	rs143342880	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	72	6	32	0	T|0.974;G|0.026	.
LOC150935	0	bcgsc.ca	37	2	240684619	240684619	+	RNA	SNP	G	G	A	rs6543576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	409	25	103	0	G|0.726;A|0.274	.
LOC220729	0	bcgsc.ca	37	3	197348638	197348638	+	RNA	SNP	G	G	A	rs11558292	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	140	7	49	0	G|0.943;A|0.057	.
LOC284757	0	bcgsc.ca	37	20	58883534	58883534	+	RNA	SNP	T	T	C	rs6513496	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	155	6	41	0	T|0.773;C|0.227	.
LOC286238	0	bcgsc.ca	37	9	91262387	91262387	+	Missense_Mutation	SNP	G	G	A	rs28550932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001100111	exon2	c.C256T	p.R86W	.	.	166	8	74	0	G|0.791;A|0.209	.
LOC286238	0	bcgsc.ca	37	9	91262522	91262522	+	Missense_Mutation	SNP	T	T	A	rs28429833	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001100111	exon2	c.A121T	p.N41Y	.	.	377	14	100	1	T|0.792;A|0.208	.
LOC341056	0	bcgsc.ca	37	11	122888678	122888678	+	RNA	SNP	G	G	C	rs1461492	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	131	7	63	0	G|0.836;C|0.164	.
LOC341056	0	bcgsc.ca	37	11	122888805	122888805	+	RNA	SNP	C	C	A	rs1461493	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	153	6	64	0	C|0.824;A|0.176	.
LOC388813	0	bcgsc.ca	37	21	15966356	15966356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001256579	exon6	c.T359C	p.V120A	.	.	74	4	42	0	.	.
LOC401010	0	bcgsc.ca	37	2	132200568	132200568	+	RNA	SNP	C	C	T	rs62176150		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	163	9	44	0	C|0.857;T|0.143	.
LOC440173	0	bcgsc.ca	37	9	89627752	89627752	+	RNA	SNP	G	G	A	rs55663731	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	196	15	61	0	G|0.955;A|0.045	.
LOC440434	0	bcgsc.ca	37	17	36365172	36365172	+	RNA	SNP	C	C	T	rs77925372	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	1470	69	664	0	C|0.750;T|0.250	.
LOC494127	0	bcgsc.ca	37	9	89699294	89699294	+	RNA	SNP	G	G	T	rs139284018	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	149	7	52	0	G|0.992;T|0.008	.
LOC494141	0	bcgsc.ca	37	11	18231459	18231459	+	RNA	SNP	C	C	G	rs7129094	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	141	8	63	0	C|0.976;G|0.023;T|0.000	.
LOC646278	0	bcgsc.ca	37	15	29046548	29046548	+	RNA	SNP	T	T	C	rs78179785	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	250	9	85	0	T|0.778;C|0.222	.
LOC646278	0	bcgsc.ca	37	15	29061918	29061918	+	RNA	SNP	C	C	T	rs190358511	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	231	11	151	0	C|0.967;T|0.033	.
LOC650368	0	bcgsc.ca	37	11	3423870	3423870	+	RNA	SNP	C	C	T	rs140858345	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	275	8	85	0	C|0.985;T|0.015	.
LOC653513	0	bcgsc.ca	37	1	144676893	144676893	+	RNA	SNP	C	C	T	rs2590120	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	945	111	337	42	C|0.500;T|0.500	.
LOC653786	0	bcgsc.ca	37	16	22563820	22563820	+	RNA	SNP	C	C	A	rs200326033		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	405	13	109	0	.	.
LOC727924	0	bcgsc.ca	37	15	22297514	22297514	+	RNA	SNP	C	C	T	rs78761949		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	673	23	281	0	.	.
LOC727924	0	bcgsc.ca	37	15	22297880	22297880	+	RNA	SNP	A	A	G	rs11853641	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	1187	53	489	1	A|0.417;G|0.583	.
LOC727924	0	bcgsc.ca	37	15	22298024	22298024	+	RNA	SNP	G	G	A	rs28631648		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	1336	27	406	3	G|1.000;|0.000	.
LOC727924	0	bcgsc.ca	37	15	22298279	22298279	+	RNA	SNP	G	G	A	rs11856712	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	659	33	278	0	G|0.754;A|0.246	.
LOC96610	0	bcgsc.ca	37	22	22664215	22664215	+	RNA	SNP	C	C	T	rs11703094	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	258	21	65	1	C|0.893;T|0.107	.
LONRF2	164832	bcgsc.ca	37	2	100915772	100915772	+	Missense_Mutation	SNP	A	A	G	rs4851287	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LONRF2	NM_198461	exon6	c.T1277C	p.L426P	.	.	182	16	54	0	A|0.253;G|0.747	154
LONRF2	164832	bcgsc.ca	37	2	100916306	100916306	+	Silent	SNP	A	A	G	rs2033748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LONRF2	NM_198461	exon5	c.T1140C	p.F380F	.	.	221	14	77	0	A|0.270;G|0.730	154
LONRF2	164832	bcgsc.ca	37	2	100919491	100919491	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LONRF2	NM_198461	exon3	c.A813G	p.K271K	.	.	96	5	58	0	.	154
LPCAT3	10162	bcgsc.ca	37	12	7090193	7090193	+	Missense_Mutation	SNP	A	A	G	rs1984564	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LPCAT3	NM_005768	exon6	c.T650C	p.I217T	.	.	261	13	77	0	A|0.762;G|0.238	91
LPIN1	23175	bcgsc.ca	37	2	11913806	11913806	+	Silent	SNP	G	G	A	rs59909741	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LPIN1	NM_001261428	exon6	c.G804A	p.L268L	.	.	159	6	43	0	G|0.936;A|0.064	156
LPIN1	23175	bcgsc.ca	37	2	11955322	11955322	+	Silent	SNP	G	G	C	rs61732581	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LPIN1	NM_001261428	exon19	c.G2505C	p.G835G	.	.	139	11	54	0	G|0.954;C|0.046	156
LPL	4023	bcgsc.ca	37	8	19805815	19805815	+	Missense_Mutation	SNP	C	C	G	rs11542065	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LPL	NM_000237	exon2	c.C213G	p.H71Q	.	.	108	6	56	1	C|0.692;G|0.308	92
LPP	4026	bcgsc.ca	37	3	188590446	188590446	+	Silent	SNP	A	A	G	rs1136644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LPP	NM_005578	exon10	c.A1605G	p.R535R	.	.	209	9	96	0	A|0.579;G|0.421	659
LRBA	987	bcgsc.ca	37	4	151719263	151719263	+	Silent	SNP	A	A	G	rs1129998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRBA	NM_006726	exon34	c.T5550C	p.V1850V	.	.	643	21	244	2	A|0.839;G|0.161	157
LRGUK	136332	bcgsc.ca	37	7	133932334	133932334	+	Silent	SNP	C	C	T	rs2598264	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRGUK	NM_144648	exon17	c.C2010T	p.H670H	.	.	152	9	67	0	C|0.905;T|0.095	227
LRGUK	136332	ucsc.edu;bcgsc.ca	37	7	133812351	133812351	+	Silent	SNP	T	T	C	rs61732215	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRGUK	NM_144648	exon1	c.T231C	p.D77D	.	.	173	17	30	0	T|0.944;C|0.056	227
LRIG1	26018	bcgsc.ca	37	3	66444615	66444615	+	Silent	SNP	G	G	A	rs6793110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRIG1	NM_015541	exon12	c.C1317T	p.S439S	.	.	193	8	71	0	G|0.717;A|0.283	230
LRIG2	9860	hgsc.bcm.edu;bcgsc.ca	37	1	113657295	113657295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRIG2	NM_014813	exon15	c.G2327A	p.R776H	.	.	154	9	46	0	.	229
LRIT2	340745	bcgsc.ca	37	10	85982075	85982075	+	Silent	SNP	A	A	G	rs7901410	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRIT2	NM_001017924	exon3	c.T1254C	p.Y418Y	.	.	84	5	32	0	A|0.945;G|0.055	92
LRP10	26020	bcgsc.ca	37	14	23341951	23341951	+	Silent	SNP	C	C	T	rs34294471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP10	NM_014045	exon2	c.C39T	p.G13G	.	.	192	8	60	0	C|0.962;T|0.038	90
LRP1	4035	bcgsc.ca	37	12	57548364	57548364	+	Silent	SNP	T	T	C	rs34574998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP1	NM_002332	exon8	c.T1107C	p.P369P	.	.	165	9	49	0	T|0.954;C|0.046	596
LRP1B	53353	bcgsc.ca	37	2	141130695	141130695	+	Silent	SNP	C	C	T	rs16843864	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP1B	NM_018557	exon69	c.G10650A	p.E3550E	.	.	236	11	67	0	C|0.863;T|0.137	311
LRP1B	53353	bcgsc.ca	37	2	141707868	141707868	+	Silent	SNP	G	G	T	rs6748626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP1B	NM_018557	exon20	c.C3072A	p.A1024A	.	.	238	8	59	0	G|0.770;T|0.230	311
LRP2	4036	bcgsc.ca	37	2	170060579	170060579	+	Missense_Mutation	SNP	T	T	C	rs34026778	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP2	NM_004525	exon42	c.A7918G	p.I2640V	.	.	410	15	142	0	T|0.995;C|0.005	175
LRP2	4036	bcgsc.ca	37	2	170070348	170070348	+	Silent	SNP	T	T	C	rs11886219	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP2	NM_004525	exon36	c.A5859G	p.R1953R	.	.	213	10	138	0	T|0.827;C|0.173	175
LRP2	4036	bcgsc.ca	37	2	170175334	170175334	+	Missense_Mutation	SNP	T	T	C	rs2229263	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP2	NM_004525	exon3	c.A248G	p.N83S	.	.	193	9	84	0	T|0.405;G|0.121	175
LRP2BP	55805	bcgsc.ca	37	4	186294198	186294198	+	Silent	SNP	C	C	T	rs3797026	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP2BP	NM_018409	exon6	c.G615A	p.G205G	.	.	152	6	60	0	C|0.767;T|0.233	90
LRP6	4040	bcgsc.ca	37	12	12311914	12311914	+	Silent	SNP	G	G	A	rs151241193	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRP6	NM_002336	exon12	c.C2640T	p.L880L	.	.	213	8	80	0	G|1.000;A|0.000	661
LRRC18	474354	bcgsc.ca	37	10	50121515	50121515	+	Missense_Mutation	SNP	G	G	A	rs61730452	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC18	NM_001006939	exon1	c.C686T	p.T229M	.	.	851	33	216	0	G|0.971;A|0.029	92
LRRC18	474354	bcgsc.ca	37	10	50121721	50121721	+	Silent	SNP	G	G	A	rs35986885	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC18	NM_001006939	exon1	c.C480T	p.P160P	.	.	164	6	75	0	G|0.860;A|0.140	92
LRRC18	474354	bcgsc.ca	37	10	50121760	50121760	+	Silent	SNP	G	G	A	rs41283291	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC18	NM_001006939	exon1	c.C441T	p.H147H	.	.	171	9	73	0	G|0.863;A|0.137	92
LRRC18	474354	bcgsc.ca	37	10	50121785	50121785	+	Missense_Mutation	SNP	G	G	A	rs11101561	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC18	NM_001006939	exon1	c.C416T	p.T139I	.	.	198	9	76	0	G|0.891;A|0.109	92
LRRC24	441381	ucsc.edu;bcgsc.ca	37	8	145748753	145748753	+	Silent	SNP	A	A	C	rs2620651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC24	NM_001024678	exon5	c.T648G	p.G216G	.	.	195	39	36	2	A|0.850;C|0.150	90
LRRC27	80313	bcgsc.ca	37	10	134161576	134161576	+	Silent	SNP	T	T	C	rs12248621	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC27	NM_001143758	exon6	c.T642C	p.A214A	.	.	98	7	51	0	T|0.994;C|0.006	91
LRRC2	79442	bcgsc.ca	37	3	46574357	46574357	+	Missense_Mutation	SNP	T	T	G	rs115132856	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC2	NM_024512	exon5	c.A533C	p.Y178S	.	.	432	20	172	0	T|0.996;G|0.004	91
LRRC2	79442	bcgsc.ca	37	3	46592987	46592987	+	Missense_Mutation	SNP	A	A	G	rs28687398	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC2	NM_024512	exon2	c.T95C	p.V32A	.	.	138	6	34	0	A|0.904;G|0.096	91
LRRC29	26231	hgsc.bcm.edu;ucsc.edu	37	16	67241545	67241545	+	Missense_Mutation	SNP	C	C	T	rs75503949	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC29	NM_001004055	exon6	c.G635A	p.R212H	.	.	80	8	29	0	C|0.995;T|0.005	226
LRRC36	55282	bcgsc.ca	37	16	67397580	67397580	+	Missense_Mutation	SNP	G	G	C	rs9922085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC36	NM_018296	exon6	c.G665C	p.R222P	.	.	156	6	62	0	G|0.813;C|0.187	90
LRRC36	55282	bcgsc.ca	37	16	67410697	67410697	+	Silent	SNP	T	T	C	rs7184290	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC36	NM_018296	exon11	c.T1728C	p.H576H	.	.	180	7	88	1	T|0.894;C|0.106	90
LRRC37A3	374819	bcgsc.ca	37	17	62854937	62854937	+	Missense_Mutation	SNP	C	C	G	rs28532307	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC37A3	NM_199340	exon12	c.G4769C	p.G1590A	.	.	857	25	319	0	C|0.946;G|0.054	90
LRRC37A3	374819	bcgsc.ca	37	17	62854952	62854952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC37A3	NM_199340	exon12	c.C4754T	p.A1585V	.	.	815	16	309	0	.	90
LRRC37A5P	652972	bcgsc.ca	37	9	114371493	114371493	+	RNA	SNP	C	C	T	rs12351897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	255	14	101	1	C|0.657;T|0.343	.
LRRC4	64101	bcgsc.ca	37	7	127669857	127669857	+	Silent	SNP	A	A	T	rs3823994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC4	NM_022143	exon2	c.T837A	p.S279S	.	.	234	8	94	0	A|0.606;T|0.394	154
LRRC48	83450	bcgsc.ca	37	17	17896090	17896090	+	Silent	SNP	C	C	T	rs4368210	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC48	NM_031294	exon6	c.C456T	p.L152L	.	.	124	7	30	0	C|0.474;T|0.526	46
LRRC48	83450	bcgsc.ca	37	17	17896124	17896124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC48	NM_031294	exon6	c.T490C	p.S164P	.	.	160	7	35	0	.	46
LRRC48	83450	bcgsc.ca	37	17	17896205	17896205	+	Missense_Mutation	SNP	C	C	T	rs4584886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC48	NM_031294	exon6	c.C571T	p.R191W	.	.	157	7	53	1	C|0.472;T|0.528	46
LRRC4C	57689	bcgsc.ca	37	11	40137543	40137543	+	Silent	SNP	T	T	C	rs2953310	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC4C	NM_001258419	exon7	c.A300G	p.R100R	.	.	214	18	98	0	T|0.478;C|0.522	521
LRRC6	23639	bcgsc.ca	37	8	133584558	133584558	+	Missense_Mutation	SNP	A	A	G	rs9297853	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC6	NM_012472	exon12	c.T1397C	p.I466T	.	.	1206	22	210	0	A|0.843;G|0.157	92
LRRC6	23639	bcgsc.ca	37	8	133637659	133637659	+	Missense_Mutation	SNP	G	G	A	rs2293979	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC6	NM_012472	exon6	c.C695T	p.T232I	.	.	1064	31	162	1	G|0.487;A|0.513	92
LRRC6	23639	bcgsc.ca	37	8	133650327	133650327	+	Silent	SNP	G	G	A	rs74599901	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC6	NM_012472	exon4	c.C283T	p.L95L	.	.	230	7	56	0	G|0.969;A|0.031	92
LRRC8A	56262	bcgsc.ca	37	9	131670457	131670457	+	Silent	SNP	T	T	C	rs3750320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRC8A	NM_001127244	exon3	c.T1014C	p.Y338Y	.	.	124	8	38	0	T|0.744;C|0.255	90
LRRFIP1	9208	bcgsc.ca	37	2	238668802	238668802	+	Silent	SNP	A	A	G	rs3213868	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRFIP1	NM_001137550	exon19	c.A1413G	p.T471T	.	.	140	10	51	0	A|0.676;G|0.324	153
LRRFIP1	9208	bcgsc.ca	37	2	238671328	238671328	+	Silent	SNP	A	A	G	rs868119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRFIP1	NM_001137552	exon11	c.A972G	p.E324E	.	.	504	14	177	0	A|0.732;G|0.268	153
LRRFIP1	9208	bcgsc.ca	37	2	238671889	238671889	+	Silent	SNP	G	G	A	rs7609062	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRFIP1	NM_001137552	exon11	c.G1533A	p.E511E	.	.	232	8	139	0	G|0.942;A|0.058	153
LRRFIP1	9208	bcgsc.ca	37	2	238671940	238671940	+	Silent	SNP	C	C	T	rs15232	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRFIP1	NM_001137552	exon11	c.C1584T	p.N528N	.	.	165	7	112	0	C|0.855;T|0.145	153
LRRFIP1	9208	bcgsc.ca	37	2	238672453	238672453	+	Silent	SNP	T	T	A	rs3820804	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRFIP1	NM_001137552	exon11	c.T2097A	p.G699G	.	.	130	9	76	0	T|0.720;A|0.280	153
LRRFIP1	9208	bcgsc.ca	37	2	238672691	238672691	+	Missense_Mutation	SNP	A	A	G	rs3739039	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRFIP1	NM_001137552	exon11	c.A2335G	p.R779G	.	.	142	5	64	0	A|0.944;G|0.056	153
LRRIQ1	84125	bcgsc.ca	37	12	85450451	85450451	+	Missense_Mutation	SNP	A	A	T	rs143537344	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRIQ1	NM_001079910	exon8	c.A1880T	p.N627I	.	.	189	6	139	0	A|0.998;T|0.002	95
LRRIQ3	127255	bcgsc.ca	37	1	74575157	74575157	+	Missense_Mutation	SNP	C	C	T	rs74093612		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRIQ3	NM_001105659	exon5	c.G788A	p.G263E	.	.	293	9	135	0	C|0.987;T|0.013	92
LRRIQ4	344657	bcgsc.ca	37	3	169540397	169540397	+	Silent	SNP	T	T	C	rs1920119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080460	exon1	c.T688C	p.L230L	.	.	289	25	70	0	T|0.444;C|0.556	.
LRRK2	120892	bcgsc.ca	37	12	40645163	40645163	+	Missense_Mutation	SNP	A	A	G	rs72546336		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRK2	NM_198578	exon9	c.A1088G	p.N363S	.	.	182	6	92	0	.	533
LRRN3	54674	bcgsc.ca	37	7	110764250	110764250	+	Silent	SNP	T	T	C	rs35151795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRN3	NM_018334	exon2	c.T1422C	p.Y474Y	.	.	90	8	36	0	T|0.977;C|0.023	154
LRRN4	164312	bcgsc.ca	37	20	6031598	6031598	+	Silent	SNP	C	C	T	rs35182819	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRRN4	NM_152611	exon3	c.G687A	p.K229K	.	.	146	7	54	0	C|0.983;T|0.017	93
LRWD1	222229	ucsc.edu;bcgsc.ca	37	7	102108263	102108263	+	Missense_Mutation	SNP	A	A	G	rs35310665		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LRWD1	NM_152892	exon5	c.A671G	p.K224R	.	.	84	8	29	0	A|0.958;G|0.042	69
LSG1	55341	bcgsc.ca	37	3	194387186	194387186	+	Silent	SNP	C	C	T	rs35670721	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LSG1	NM_018385	exon3	c.G342A	p.P114P	.	.	491	16	127	0	C|0.920;T|0.080	90
LSP1	4046	ucsc.edu;bcgsc.ca	37	11	1874404	1874404	+	Silent	SNP	C	C	T	rs2089910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LSP1	NM_002339	exon1	c.C30T	p.A10A	.	.	45	5	27	0	C|0.721;T|0.279	90
LTA	4049	bcgsc.ca	37	6	31540784	31540784	+	Missense_Mutation	SNP	C	C	A	rs1041981	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTA	NM_001159740	exon3	c.C179A	p.T60N	.	.	117	9	35	0	C|0.603;A|0.397	522
LTBP1	4052	bcgsc.ca	37	2	33500039	33500039	+	Silent	SNP	T	T	C	rs75654346	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTBP1	NM_206943	exon17	c.T2751C	p.D917D	.	.	134	6	36	0	T|0.977;C|0.023	230
LTBP1	4052	bcgsc.ca	37	2	33622282	33622282	+	Silent	SNP	C	C	G	rs146189249	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTBP1	NM_206943	exon33	c.C4917G	p.V1639V	.	.	330	19	142	0	C|0.995;G|0.005	230
LTBR	4055	ucsc.edu	37	12	6495275	6495275	+	Silent	SNP	C	C	A	rs2364480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTBR	NM_002342	exon5	c.C516A	p.A172A	.	.	76	8	19	0	C|0.189;A|0.811	659
LTF	4057	bcgsc.ca	37	3	46484964	46484964	+	Silent	SNP	G	G	A	rs1042073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTF	NM_002343	exon13	c.C1623T	p.N541N	.	.	191	6	59	0	G|0.597;A|0.403	703
LTF	4057	ucsc.edu;bcgsc.ca	37	3	46501213	46501213	+	Missense_Mutation	SNP	T	T	C	rs1126478	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTF	NM_002343	exon2	c.A140G	p.K47R	.	.	295	30	112	0	T|0.446;C|0.554	703
LTN1	26046	bcgsc.ca	37	21	30318207	30318207	+	Silent	SNP	T	T	C	rs2250574	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTN1	NM_015565	exon21	c.A3828G	p.L1276L	.	.	301	14	105	0	A|0.007;C|0.103	530
LTN1	26046	bcgsc.ca	37	21	30357163	30357163	+	Silent	SNP	G	G	T	rs2245431	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LTN1	NM_015565	exon4	c.C564A	p.P188P	.	.	148	7	73	0	G|0.839;T|0.161	530
LUZP1	7798	bcgsc.ca	37	1	23415518	23415518	+	Missense_Mutation	SNP	C	C	T	rs12066671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LUZP1	NM_033631	exon5	c.G3101A	p.S1034N	.	.	209	7	86	0	C|0.925;T|0.075	90
LUZP6	767558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135612387	135612387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	123	38	77	0	.	.
LY6G5B	58496	bcgsc.ca	37	6	31639845	31639845	+	Missense_Mutation	SNP	C	C	A	rs11758242	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LY6G5B	NM_021221	exon3	c.C392A	p.S131Y	.	.	169	8	55	0	C|0.932;A|0.068	90
LY6G6E	79136	bcgsc.ca	37	6	31680468	31680468	+	RNA	SNP	C	C	T	rs34815989		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	114	9	44	0	C|0.992;T|0.008	.
LY6G6F	259215	bcgsc.ca	37	6	31675501	31675501	+	Missense_Mutation	SNP	G	G	A	rs9267547	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LY6G6F	NM_001003693	exon2	c.G319A	p.A107T	.	.	181	16	66	0	G|0.854;A|0.146	567
LY75	4065	bcgsc.ca	37	2	160690646	160690646	+	Silent	SNP	T	T	C	rs6722188	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LY75	NM_002349	exon27	c.A3750G	p.P1250P	.	.	386	34	102	0	T|0.880;C|0.120	90
LY9	4063	bcgsc.ca	37	1	160793442	160793442	+	Silent	SNP	A	A	G	rs474131	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LY9	NM_002348	exon8	c.A1686G	p.V562V	.	.	146	7	52	0	A|0.447;G|0.553	91
LY9	4063	bcgsc.ca	37	1	160793560	160793560	+	Missense_Mutation	SNP	A	A	G	rs509749	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LY9	NM_002348	exon8	c.A1804G	p.M602V	.	.	118	6	34	0	A|0.404;G|0.596	91
LYPD3	27076	bcgsc.ca	37	19	43965804	43965804	+	Missense_Mutation	SNP	G	G	T	rs28477226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYPD3	NM_014400	exon5	c.C740A	p.T247K	.	.	294	9	99	0	G|0.975;T|0.025	91
LYSMD3	116068	bcgsc.ca	37	5	89820984	89820984	+	Silent	SNP	T	T	C	rs10069050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYSMD3	NM_198273	exon2	c.A123G	p.E41E	.	.	270	19	115	0	T|0.410;C|0.590	90
LYSMD4	145748	ucsc.edu;bcgsc.ca	37	15	100269737	100269737	+	Missense_Mutation	SNP	G	G	A	rs8041078	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYSMD4	NM_152449	exon6	c.C485T	p.A162V	.	.	70	7	46	0	G|0.853;A|0.147	90
LYST	1130	bcgsc.ca	37	1	235897907	235897907	+	Missense_Mutation	SNP	C	C	T	rs35333195	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon32	c.G8411A	p.G2804D	.	.	350	13	105	1	C|0.963;T|0.037	143
LYST	1130	bcgsc.ca	37	1	235909751	235909751	+	Silent	SNP	A	A	G	rs34160788	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon29	c.T7857C	p.H2619H	.	.	475	13	147	0	A|0.972;G|0.028	143
LYST	1130	bcgsc.ca	37	1	235922523	235922523	+	Silent	SNP	T	T	C	rs34466404	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon23	c.A6630G	p.E2210E	.	.	254	8	94	0	T|0.943;C|0.057	143
LYST	1130	bcgsc.ca	37	1	235933535	235933535	+	Missense_Mutation	SNP	C	C	G	rs6665568	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon20	c.G5847C	p.Q1949H	.	.	295	11	122	0	C|0.943;G|0.057	143
LYST	1130	bcgsc.ca	37	1	235963637	235963637	+	Missense_Mutation	SNP	T	T	G	rs74641549	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon10	c.A3989C	p.D1330A	.	.	172	9	90	0	T|0.968;G|0.032	143
LYST	1130	bcgsc.ca	37	1	235969386	235969386	+	Missense_Mutation	SNP	C	C	T	rs10465613	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon6	c.G3050A	p.S1017N	.	.	680	34	181	1	C|0.958;T|0.042	143
LYST	1130	bcgsc.ca	37	1	235973544	235973544	+	Missense_Mutation	SNP	A	A	C	rs7524261	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon5	c.T574G	p.L192V	.	.	528	28	282	0	A|0.954;C|0.046	143
LYST	1130	hgsc.bcm.edu;bcgsc.ca	37	1	235920740	235920740	+	Silent	SNP	C	C	T	rs10926586	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon24	c.G6900A	p.L2300L	.	.	279	13	116	0	C|0.971;T|0.029	143
LYST	1130	ucsc.edu;bcgsc.ca	37	1	235993565	235993565	+	Silent	SNP	T	T	G	rs11464	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYST	NM_000081	exon3	c.A153C	p.G51G	.	.	78	11	32	0	T|0.870;G|0.130	143
LYZL1	84569	bcgsc.ca	37	10	29581493	29581493	+	Missense_Mutation	SNP	A	A	C	rs3818551	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYZL1	NM_032517	exon3	c.A323C	p.Q108P	.	.	226	18	94	1	A|0.758;C|0.242	90
LYZL2	119180	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30918619	30918619	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYZL2	NM_183058	exon1	c.C16T	p.L6L	.	.	178	74	46	1	.	90
LYZL2	119180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30915727	30915727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	LYZL2	NM_183058	exon2	c.T256A	p.W86R	.	.	618	102	214	0	.	90
MAB21L3	126868	ucsc.edu;bcgsc.ca	37	1	116670774	116670774	+	Silent	SNP	A	A	G	rs10754431	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAB21L3	NM_152367	exon6	c.A669G	p.G223G	.	.	246	23	54	0	A|0.608;G|0.392	91
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20193822	20193822	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MACC1	NM_182762	exon6	c.T2340C	p.A780A	.	.	392	130	153	0	.	93
MACF1	23499	bcgsc.ca	37	1	39761506	39761506	+	Silent	SNP	G	G	C	rs116026083	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MACF1	NM_012090	exon21	c.G2322C	p.L774L	.	.	898	32	404	1	G|0.988;C|0.012	165
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39775245	39775245	+	Silent	SNP	C	C	T	rs74718295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MACF1	NM_012090	exon25	c.C2808T	p.V936V	.	.	189	9	84	0	C|0.988;T|0.012	165
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39846038	39846038	+	Silent	SNP	A	A	G	rs6673570	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MACF1	NM_012090	exon51	c.A7455G	p.E2485E	.	.	143	12	83	0	A|0.986;G|0.014	165
MACROD2	140733	bcgsc.ca	37	20	14066276	14066276	+	Missense_Mutation	SNP	C	C	T	rs2990505	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MACROD2	NM_080676	exon3	c.C173T	p.T58I	.	.	267	9	110	0	C|0.749;T|0.251	22
MADCAM1	8174	bcgsc.ca	37	19	501767	501767	+	Missense_Mutation	SNP	C	C	T	rs78245161		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MADCAM1	NM_130760	exon4	c.C766T	p.P256S	.	.	105	9	64	1	C|0.500;T|0.500	90
MADD	8567	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47298360	47298360	+	Silent	SNP	G	G	A	rs326214	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MADD	NM_130474	exon5	c.G1041A	p.E347E	.	.	203	29	43	0	G|0.446;A|0.554	682
MAGEA11	4110	bcgsc.ca	37	X	148798223	148798223	+	Silent	SNP	T	T	C	rs2233050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA11	NM_005366	exon5	c.T1077C	p.L359L	.	.	88	6	43	0	T|0.400;C|0.600	132
MAGEA12	4111	bcgsc.ca	37	X	151899913	151899913	+	Silent	SNP	T	T	C	rs2233055	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA12	NM_005367	exon2	c.A888G	p.G296G	.	.	487	21	164	1	T|0.627;C|0.373	131
MAGEA12	4111	ucsc.edu	37	X	151899355	151899355	+	RNA	SNP	T	T	C	rs2471773	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA12	.	.	.	.	.	.	32	8	24	0	0|0.031;C|0.516	131
MAGEA12	4111	ucsc.edu	37	X	151899789	151899789	+	RNA	SNP	G	G	A	rs3005	byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA12	.	.	.	.	.	.	468	70	135	1	0|0.013;T|0.473	131
MAGEA12	4111	ucsc.edu	37	X	151899818	151899818	+	RNA	SNP	C	C	T	rs2233056		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA12	.	.	.	.	.	.	424	55	134	1	T|0.004;G|0.466	131
MAGEA4	4103	bcgsc.ca	37	X	151092220	151092220	+	Silent	SNP	A	A	G	rs1047248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA4	NM_001011548	exon3	c.A84G	p.A28A	.	.	184	13	60	0	A|0.460;G|0.540	194
MAGEA6	4105	bcgsc.ca	37	X	151869745	151869745	+	Silent	SNP	C	C	T	rs7057497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA6	NM_005363	exon3	c.C435T	p.Y145Y	.	.	389	15	127	0	C|0.838;T|0.162	90
MAGEA6	4105	bcgsc.ca	37	X	151869765	151869765	+	Missense_Mutation	SNP	G	G	T	rs7056365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEA6	NM_005363	exon3	c.G455T	p.S152I	.	.	411	21	125	0	G|0.872;T|0.128	90
MAGEB16	139604	ucsc.edu;bcgsc.ca	37	X	35820795	35820795	+	Missense_Mutation	SNP	A	A	G	rs5973488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEB16	NM_001099921	exon2	c.A482G	p.H161R	.	.	149	14	56	0	A|0.360;0|0.032	66
MAGEB18	286514	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26157220	26157220	+	Missense_Mutation	SNP	C	C	T	rs5944317	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEB18	NM_173699	exon2	c.C118T	p.P40S	.	.	156	22	52	0	C|0.372;T|0.628	130
MAGEB18	286514	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26157792	26157792	+	Silent	SNP	C	C	T	rs5944318	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEB18	NM_173699	exon2	c.C690T	p.A230A	.	.	132	22	60	0	C|0.368;T|0.632	130
MAGEB2	4113	bcgsc.ca	37	X	30237003	30237003	+	Silent	SNP	C	C	T	rs2074793	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEB2	NM_002364	exon2	c.C306T	p.S102S	.	.	146	10	45	0	C|0.599;0|0.003	131
MAGEB6	158809	bcgsc.ca	37	X	26212251	26212251	+	Silent	SNP	C	C	T	rs4351548	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEB6	NM_173523	exon2	c.C288T	p.T96T	.	.	164	15	44	0	C|0.943;T|0.057	133
MAGEB6	158809	bcgsc.ca	37	X	26212256	26212256	+	Missense_Mutation	SNP	G	G	A	rs4630029	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEB6	NM_173523	exon2	c.G293A	p.R98H	.	.	166	15	41	0	G|0.960;A|0.040	133
MAGEC1	9947	bcgsc.ca	37	X	140993884	140993884	+	Missense_Mutation	SNP	C	C	T	rs150761200	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.C694T	p.P232S	.	.	323	13	118	0	C|0.981;T|0.019	133
MAGEC1	9947	bcgsc.ca	37	X	140994066	140994066	+	Missense_Mutation	SNP	G	G	C	rs140075882	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.G876C	p.Q292H	.	.	311	25	101	0	G|0.948;C|0.052	133
MAGEC1	9947	bcgsc.ca	37	X	140994190	140994190	+	Missense_Mutation	SNP	C	C	G	rs59520182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.C1000G	p.P334A	.	.	431	16	167	1	C|0.998;G|0.002	133
MAGEC1	9947	bcgsc.ca	37	X	140994407	140994407	+	Missense_Mutation	SNP	C	C	G	rs62611965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.C1217G	p.S406C	.	.	485	30	165	0	C|0.933;G|0.067	133
MAGEC1	9947	bcgsc.ca	37	X	140994419	140994419	+	Missense_Mutation	SNP	T	T	C	rs138268726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.T1229C	p.I410T	.	.	509	31	167	1	T|0.932;C|0.068	133
MAGEC1	9947	bcgsc.ca	37	X	140994517	140994517	+	Missense_Mutation	SNP	C	C	G	rs62611966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.C1327G	p.L443V	.	.	389	30	157	0	C|0.929;G|0.071	133
MAGEC1	9947	ucsc.edu	37	X	140995315	140995315	+	Missense_Mutation	SNP	C	C	T	rs56256227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC1	NM_005462	exon4	c.C2125T	p.H709Y	.	.	85	12	18	0	C|0.922;T|0.078	133
MAGEC3	139081	bcgsc.ca	37	X	140985522	140985522	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGEC3	NM_138702	exon8	c.A1836G	p.E612E	.	.	243	7	107	0	.	555
MAGED1	9500	bcgsc.ca	37	X	51644748	51644748	+	Silent	SNP	C	C	A	rs3199687	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGED1	NM_001005333	exon13	c.C2227A	p.R743R	.	.	129	11	51	0	C|0.875;A|0.125	133
MAGED2	10916	bcgsc.ca	37	X	54838077	54838077	+	Silent	SNP	C	C	T	rs2071932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAGED2	NM_201222	exon6	c.C981T	p.S327S	.	.	169	9	40	0	C|0.587;0|0.015	195
MAMDC2	256691	bcgsc.ca	37	9	72723209	72723209	+	Silent	SNP	A	A	G	rs2975886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAMDC2	NM_153267	exon3	c.A231G	p.E77E	.	.	159	6	54	0	A|0.920;G|0.080	91
MAML2	84441	bcgsc.ca	37	11	95825374	95825374	+	Silent	SNP	T	T	C	rs112603485		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAML2	NM_032427	exon2	c.A1821G	p.Q607Q	.	.	308	7	124	0	C|1.000;|0.000	850
MAML2	84441	bcgsc.ca	37	11	95825386	95825386	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAML2	NM_032427	exon2	c.G1809A	p.Q603Q	.	.	250	18	108	1	.	850
MAML2	84441	hgsc.bcm.edu	37	11	95825206	95825206	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAML2	NM_032427	exon2	c.G1989A	p.Q663Q	.	.	263	18	104	0	.	850
MANEAL	149175	bcgsc.ca	37	1	38265491	38265491	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MANEAL	NM_001113482	exon4	c.T990C	p.G330G	.	.	146	5	89	0	.	90
MANSC1	54682	bcgsc.ca	37	12	12483318	12483318	+	Silent	SNP	C	C	T	rs3741801	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MANSC1	NM_018050	exon4	c.G939A	p.S313S	.	.	186	6	86	0	C|0.917;T|0.083	90
MANSC4	100287284	bcgsc.ca	37	12	27915718	27915718	+	Missense_Mutation	SNP	A	A	T	rs10842975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001146221	exon3	c.T976A	p.S326T	.	.	549	33	216	0	A|0.493;T|0.507	.
MAOB	4129	hgsc.bcm.edu;bcgsc.ca	37	X	43656384	43656384	+	Silent	SNP	T	T	C	rs7879356	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAOB	NM_000898	exon6	c.A606G	p.T202T	.	.	224	15	70	0	0|0.072;C|0.055	555
MAP10	54627	bcgsc.ca	37	1	232940953	232940953	+	Missense_Mutation	SNP	T	T	C	rs10797593	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019090	exon1	c.T184C	p.S62P	.	.	305	13	135	1	T|0.893;C|0.107	.
MAP10	54627	bcgsc.ca	37	1	232941215	232941215	+	Missense_Mutation	SNP	A	A	G	rs41271527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019090	exon1	c.A446G	p.E149G	.	.	111	13	56	1	A|0.951;G|0.049	.
MAP10	54627	bcgsc.ca	37	1	232941677	232941677	+	Missense_Mutation	SNP	G	G	T	rs3766497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019090	exon1	c.G908T	p.R303L	.	.	177	12	44	0	G|0.896;T|0.104	.
MAP10	54627	bcgsc.ca	37	1	232942028	232942028	+	Missense_Mutation	SNP	A	A	G	rs61739198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019090	exon1	c.A1259G	p.N420S	.	.	173	9	106	0	A|0.970;G|0.030	.
MAP10	54627	hgsc.bcm.edu;bcgsc.ca	37	1	232943513	232943513	+	Missense_Mutation	SNP	A	A	T	rs61735509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019090	exon1	c.A2744T	p.H915L	.	.	143	7	91	0	A|0.989;T|0.011	.
MAP1A	4130	bcgsc.ca	37	15	43816917	43816917	+	Silent	SNP	G	G	A	rs1060939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP1A	NM_002373	exon4	c.G3246A	p.G1082G	.	.	112	7	52	0	G|0.497;A|0.503	141
MAP1A	4130	bcgsc.ca	37	15	43818052	43818052	+	Missense_Mutation	SNP	G	G	A	rs2245715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP1A	NM_002373	exon4	c.G4381A	p.D1461N	.	.	139	9	125	0	G|0.669;A|0.331	141
MAP1A	4130	ucsc.edu;bcgsc.ca	37	15	43817406	43817406	+	Silent	SNP	T	T	C	rs480108	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP1A	NM_002373	exon4	c.T3735C	p.D1245D	.	.	167	16	51	0	T|0.539;C|0.461	141
MAP3K14-AS1	100133991	ucsc.edu	37	17	43343847	43343847	+	RNA	SNP	G	G	A	rs11574834	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	43	4	17	0	G|0.936;A|0.064	.
MAP3K19	80122	bcgsc.ca	37	2	135745545	135745545	+	Silent	SNP	C	C	T	rs11899779	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025052	exon7	c.G897A	p.R299R	.	.	211	10	106	0	C|0.702;T|0.298	.
MAP3K19	80122	hgsc.bcm.edu;bcgsc.ca	37	2	135743593	135743593	+	Missense_Mutation	SNP	T	T	C	rs79528341	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025052	exon7	c.A2849G	p.N950S	.	.	705	33	307	0	T|0.994;C|0.006	.
MAP3K5	4217	bcgsc.ca	37	6	137026266	137026266	+	Silent	SNP	T	T	G	rs9321567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP3K5	NM_005923	exon3	c.A594C	p.I198I	.	.	339	15	131	0	T|0.413;G|0.587	982
MAP3K5	4217	ucsc.edu;bcgsc.ca	37	6	136977568	136977568	+	Silent	SNP	T	T	C	rs2076260	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP3K5	NM_005923	exon10	c.A1557G	p.L519L	.	.	102	13	50	0	T|0.613;C|0.387	982
MAP4	4134	bcgsc.ca	37	3	47969734	47969734	+	Silent	SNP	G	G	A	rs20565	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP4	NM_001134364	exon4	c.C399T	p.V133V	.	.	286	22	102	0	G|0.901;A|0.099	93
MAP6	4135	hgsc.bcm.edu;bcgsc.ca	37	11	75298206	75298206	+	Silent	SNP	C	C	T	rs151285396	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP6	NM_033063	exon4	c.G2340A	p.K780K	.	.	188	10	81	0	C|0.990;T|0.010	226
MAP7D2	256714	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	20071046	20071046	+	Missense_Mutation	SNP	T	T	C	rs34519770	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP7D2	NM_152780	exon5	c.A545G	p.N182S	.	.	213	27	65	0	T|0.544;C|0.456	195
MAP7D3	79649	bcgsc.ca	37	X	135310785	135310785	+	Missense_Mutation	SNP	T	T	C	rs2273221	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP7D3	NM_024597	exon11	c.A1883G	p.Q628R	.	.	378	30	148	0	0|0.030;C|0.478	110
MAP7D3	79649	bcgsc.ca	37	X	135313034	135313034	+	Missense_Mutation	SNP	T	T	G	rs1055497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP7D3	NM_024597	exon9	c.A1505C	p.E502A	.	.	136	12	50	0	0|0.026;G|0.527	110
MAP9	79884	bcgsc.ca	37	4	156274377	156274377	+	Missense_Mutation	SNP	T	T	C	rs1058992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP9	NM_001039580	exon11	c.A1496G	p.K499R	.	.	1041	42	256	0	T|0.652;C|0.348	91
MAP9	79884	bcgsc.ca	37	4	156289917	156289917	+	Missense_Mutation	SNP	G	G	A	rs3733391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAP9	NM_001039580	exon5	c.C529T	p.R177W	.	.	621	21	334	0	G|0.847;A|0.153	91
MAPK12	6300	bcgsc.ca	37	22	50696678	50696678	+	Missense_Mutation	SNP	G	G	A	rs34422484	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAPK12	NM_002969	exon3	c.C308T	p.T103M	.	.	178	15	49	0	G|0.944;A|0.056	1402
MAPRE1	22919	bcgsc.ca	37	20	31427635	31427635	+	Silent	SNP	C	C	T	rs2070090	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAPRE1	NM_012325	exon5	c.C570T	p.D190D	.	.	108	7	52	0	C|0.738;T|0.262	90
MARCH10	162333	bcgsc.ca	37	17	60814273	60814273	+	Missense_Mutation	SNP	A	A	G	rs9891498	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MARCH10	NM_001100875	exon6	c.T956C	p.F319S	.	.	377	10	118	1	A|0.682;G|0.318	90
MARCH10	162333	ucsc.edu;bcgsc.ca	37	17	60802418	60802418	+	Missense_Mutation	SNP	C	C	T	rs80285368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MARCH10	NM_001100875	exon7	c.G1985A	p.C662Y	.	.	97	9	41	0	C|0.993;T|0.007	90
MARVELD3	91862	ucsc.edu;bcgsc.ca	37	16	71668634	71668634	+	Silent	SNP	T	T	G	rs12932850	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MARVELD3	NM_052858	exon3	c.T1134G	p.A378A	.	.	124	14	58	0	T|0.631;G|0.369	91
MASP2	10747	bcgsc.ca	37	1	11090897	11090897	+	Missense_Mutation	SNP	A	A	G	rs2273346	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MASP2	NM_006610	exon9	c.T1130C	p.V377A	.	.	211	9	98	0	A|0.916;G|0.084	94
MASTL	84930	bcgsc.ca	37	10	27454465	27454465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MASTL	NM_032844	exon6	c.T808C	p.S270P	.	.	87	4	40	0	.	522
MAT1A	4143	bcgsc.ca	37	10	82033594	82033594	+	Silent	SNP	G	G	A	rs2993763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAT1A	NM_000429	exon9	c.C1131T	p.Y377Y	.	.	141	7	57	0	G|0.458;A|0.542	90
MAT1A	4143	bcgsc.ca	37	10	82040052	82040052	+	Silent	SNP	A	A	G	rs1143694	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MAT1A	NM_000429	exon5	c.T426C	p.A142A	.	.	93	5	31	0	A|0.209;G|0.791	90
MB21D1	115004	bcgsc.ca	37	6	74138503	74138503	+	Silent	SNP	G	G	A	rs73754628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MB21D1	NM_138441	exon4	c.C1146T	p.I382I	.	.	267	9	121	0	G|0.947;A|0.053	90
MBD4	8930	bcgsc.ca	37	3	129152089	129152089	+	Silent	SNP	G	G	A	rs140696	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MBD4	NM_003925	exon6	c.C1413T	p.G471G	.	.	166	8	50	0	G|0.859;A|0.141	228
MBD4	8930	bcgsc.ca	37	3	129155463	129155463	+	Missense_Mutation	SNP	A	A	G	rs2307289	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MBD4	NM_003925	exon3	c.T1024C	p.S342P	.	.	474	14	154	0	A|0.956;G|0.044	228
MBOAT1	154141	bcgsc.ca	37	6	20109842	20109842	+	Missense_Mutation	SNP	T	T	C	rs2065649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MBOAT1	NM_001080480	exon12	c.A1348G	p.I450V	.	.	92	5	45	0	T|0.949;C|0.051	68
MBTPS2	51360	ucsc.edu;bcgsc.ca	37	X	21861434	21861434	+	Silent	SNP	A	A	G	rs3213451	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MBTPS2	NM_015884	exon2	c.A222G	p.Q74Q	.	.	163	18	60	0	A|0.566;G|0.434	91
MC1R	4157	bcgsc.ca	37	16	89986608	89986608	+	Silent	SNP	A	A	G	rs2228478	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_002386	exon1	c.A942G	p.T314T	.	.	515	18	153	0	A|0.821;G|0.179	.
MC2R	4158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13885109	13885109	+	Missense_Mutation	SNP	G	G	A	rs104894660	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MC2R	NM_000529	exon2	c.C409T	p.R137W	.	.	58	26	27	0	.	95
MC5R	4161	bcgsc.ca	37	18	13826088	13826088	+	Silent	SNP	C	C	T	rs17848292	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MC5R	NM_005913	exon1	c.C324T	p.D108D	.	.	199	10	70	0	C|0.850;T|0.150	526
MC5R	4161	bcgsc.ca	37	18	13826391	13826391	+	Missense_Mutation	SNP	C	C	G	rs2236700	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MC5R	NM_005913	exon1	c.C627G	p.F209L	.	.	340	11	101	0	C|0.764;G|0.236	526
MC5R	4161	bcgsc.ca	37	18	13826508	13826508	+	Silent	SNP	C	C	T	rs2236701	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MC5R	NM_005913	exon1	c.C744T	p.T248T	.	.	311	8	99	0	C|0.775;T|0.225	526
MC5R	4161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13826209	13826209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MC5R	NM_005913	exon1	c.C445T	p.R149C	.	.	180	46	79	0	.	526
MCF2	4168	bcgsc.ca	37	X	138678744	138678744	+	Silent	SNP	G	G	A	rs2235708	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCF2	NM_001171876	exon23	c.C2469T	p.D823D	.	.	135	7	63	1	0|0.012;A|0.052	227
MCM10	55388	bcgsc.ca	37	10	13230950	13230950	+	Silent	SNP	C	C	T	rs2296222	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCM10	NM_182751	exon10	c.C1288T	p.L430L	.	.	147	6	49	0	C|0.837;T|0.163	653
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47695223	47695223	+	Silent	SNP	G	G	A	rs145653489	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCM3AP	NM_003906	exon6	c.C1875T	p.T625T	.	.	91	6	38	0	G|0.999;A|0.001	291
MCM8	84515	bcgsc.ca	37	20	5933108	5933108	+	Missense_Mutation	SNP	C	C	A	rs236110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCM8	NM_032485	exon3	c.C187A	p.Q63K	.	.	417	34	83	0	C|0.763;A|0.237	227
MCM9	254394	bcgsc.ca	37	6	119245024	119245024	+	Silent	SNP	C	C	T	rs12197931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCM9	NM_017696	exon2	c.G573A	p.S191S	.	.	221	6	76	0	C|0.923;T|0.077	515
MCMDC2	157777	bcgsc.ca	37	8	67786585	67786585	+	Missense_Mutation	SNP	A	A	G	rs61739940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173518	exon3	c.A119G	p.Y40C	.	.	401	10	77	0	A|0.970;G|0.030	.
MCPH1	79648	bcgsc.ca	37	8	6479178	6479178	+	Silent	SNP	C	C	A	rs2912016	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCPH1	NM_024596	exon13	c.C2418A	p.A806A	.	.	63	4	35	0	C|0.615;A|0.385	229
MCPH1	79648	hgsc.bcm.edu;bcgsc.ca	37	8	6302959	6302959	+	Silent	SNP	C	C	T	rs141218500		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCPH1	NM_001172574	exon8	c.C1716T	p.N572N	.	.	86	6	86	0	C|0.999;T|0.001	229
MCPH1	79648	hgsc.bcm.edu;bcgsc.ca	37	8	6335130	6335130	+	Missense_Mutation	SNP	G	G	A	rs138218829		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MCPH1	NM_024596	exon10	c.G1951A	p.V651I	.	.	194	10	76	0	G|0.999;A|0.000	229
MDC1	9656	bcgsc.ca	37	6	30671588	30671588	+	Missense_Mutation	SNP	A	A	T	rs28994873	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.T5372A	p.V1791E	.	.	263	12	85	1	A|0.725;T|0.275	273
MDC1	9656	bcgsc.ca	37	6	30671726	30671726	+	Missense_Mutation	SNP	G	G	C	rs28994871	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.C5234G	p.P1745R	.	.	119	10	64	0	G|0.724;C|0.276	273
MDC1	9656	bcgsc.ca	37	6	30672757	30672757	+	Silent	SNP	G	G	A	rs28994870	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.C4203T	p.G1401G	.	.	364	16	128	0	G|0.980;A|0.020	273
MDC1	9656	bcgsc.ca	37	6	30673064	30673064	+	Missense_Mutation	SNP	C	C	T	rs144657716	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.G3896A	p.R1299Q	.	.	439	26	167	2	C|0.977;T|0.023	273
MDC1	9656	bcgsc.ca	37	6	30673113	30673113	+	Missense_Mutation	SNP	G	G	T	rs79216909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.C3847A	p.P1283T	.	.	478	24	169	2	G|0.973;T|0.027	273
MDC1	9656	bcgsc.ca	37	6	30673288	30673288	+	Silent	SNP	G	G	T	rs114458930	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.C3672A	p.T1224T	.	.	426	23	170	1	G|0.982;T|0.018	273
MDC1	9656	bcgsc.ca	37	6	30673340	30673340	+	Missense_Mutation	SNP	A	A	G	rs144700924	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.T3620C	p.L1207P	.	.	461	32	193	1	A|0.983;G|0.017	273
MDC1	9656	bcgsc.ca	37	6	30673351	30673351	+	Silent	SNP	C	C	G	rs149535951	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.G3609C	p.V1203V	.	.	476	25	187	0	C|0.983;G|0.017	273
MDC1	9656	bcgsc.ca	37	6	30673359	30673359	+	Missense_Mutation	SNP	T	T	G	rs143258964	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.A3601C	p.T1201P	.	.	481	27	184	1	T|0.983;G|0.017	273
MDC1	9656	bcgsc.ca	37	6	30673625	30673625	+	Missense_Mutation	SNP	G	G	A	rs28987085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon10	c.C3335T	p.S1112F	.	.	221	6	99	0	G|0.981;A|0.019	273
MDC1	9656	bcgsc.ca	37	6	30676046	30676046	+	Silent	SNP	C	C	G	rs28986466	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDC1	NM_014641	exon8	c.G2310C	p.T770T	.	.	154	5	66	0	C|0.719;G|0.281	273
MDH1B	130752	bcgsc.ca	37	2	207603234	207603234	+	Missense_Mutation	SNP	T	T	G	rs2287631	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDH1B	NM_001039845	exon12	c.A1530C	p.E510D	.	.	340	16	161	0	T|0.683;G|0.317	94
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69230464	69230464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDM2	NM_002392	exon10	c.A853C	p.T285P	.	.	149	47	75	0	.	1270
MDN1	23195	bcgsc.ca	37	6	90486325	90486325	+	Silent	SNP	T	T	C	rs41402447	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MDN1	NM_014611	exon12	c.A1815G	p.R605R	.	.	339	15	131	0	T|0.869;C|0.131	100
ME2	4200	bcgsc.ca	37	18	48458662	48458662	+	Missense_Mutation	SNP	G	G	A	rs649224	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ME2	NM_001168335	exon13	c.G1349A	p.G450E	.	.	415	24	140	0	G|0.837;A|0.163	90
MECOM	2122	bcgsc.ca	37	3	168833463	168833463	+	Silent	SNP	G	G	A	rs2276719	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MECOM	NM_004991	exon8	c.C2197T	p.L733L	.	.	236	10	93	0	G|0.954;A|0.046	853
MECOM	2122	bcgsc.ca	37	3	168845664	168845664	+	Silent	SNP	C	C	T	rs16853210	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MECOM	NM_004991	exon5	c.G798A	p.K266K	.	.	267	9	87	0	C|0.962;T|0.038	853
MECOM	2122	hgsc.bcm.edu;bcgsc.ca	37	3	168812942	168812942	+	Missense_Mutation	SNP	G	G	A	rs34224062	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MECOM	NM_004991	exon13	c.C2941T	p.H981Y	.	.	388	17	126	0	G|0.999;A|0.001	853
MED12L	116931	bcgsc.ca	37	3	151131077	151131077	+	Silent	SNP	C	C	T	rs2276763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED12L	NM_053002	exon40	c.C6186T	p.L2062L	.	.	186	17	61	0	C|0.920;T|0.080	576
MED13L	23389	bcgsc.ca	37	12	116429309	116429309	+	Silent	SNP	G	G	A	rs78561507	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED13L	NM_015335	exon17	c.C3450T	p.P1150P	.	.	123	6	57	0	G|0.992;A|0.008	232
MED14	9282	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40573157	40573157	+	Silent	SNP	G	G	A	rs6520683	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED14	NM_004229	exon5	c.C525T	p.D175D	.	.	302	38	130	0	G|0.693;A|0.307	289
MED1	5469	bcgsc.ca	37	17	37604153	37604153	+	Silent	SNP	T	T	A	rs73294997	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED1	NM_004774	exon2	c.A30T	p.S10S	.	.	166	10	45	0	T|0.966;A|0.034	620
MED17	9440	bcgsc.ca	37	11	93540765	93540765	+	Silent	SNP	T	T	C	rs16919389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED17	NM_004268	exon10	c.T1548C	p.Y516Y	.	.	241	12	96	0	T|0.947;C|0.053	187
MED24	9862	bcgsc.ca	37	17	38186106	38186106	+	Silent	SNP	C	C	T	rs11555255	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED24	NM_014815	exon13	c.G1161A	p.A387A	.	.	359	14	107	0	T|0.093;G|0.350;C|0.506;A|0.051	187
MED25	81857	bcgsc.ca	37	19	50322482	50322482	+	Silent	SNP	C	C	G	rs74863643	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MED25	NM_030973	exon3	c.C234G	p.P78P	.	.	99	6	43	0	C|0.962;G|0.038	91
MEDAG	84935	bcgsc.ca	37	13	31495733	31495733	+	Silent	SNP	C	C	T	rs6563571	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032849	exon4	c.C537T	p.P179P	.	.	266	11	118	0	C|0.908;T|0.092	.
MEFV	4210	bcgsc.ca	37	16	3293888	3293888	+	Missense_Mutation	SNP	C	C	T	rs1231122	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEFV	NM_001198536	exon8	c.G1306A	p.G436R	.	.	136	10	48	0	C|0.608;T|0.392	228
MEFV	4210	bcgsc.ca	37	16	3293922	3293922	+	Missense_Mutation	SNP	A	A	T	rs1231123	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEFV	NM_001198536	exon8	c.T1272A	p.D424E	.	.	125	9	35	0	A|0.656;T|0.344	228
MEGF11	84465	ucsc.edu	37	15	66411441	66411441	+	Missense_Mutation	SNP	C	C	T	rs16949528	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEGF11	NM_032445	exon4	c.G284A	p.S95N	.	.	56	6	12	0	C|0.642;T|0.358	69
MEGF6	1953	bcgsc.ca	37	1	3428608	3428608	+	Missense_Mutation	SNP	G	G	A	rs11585362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEGF6	NM_001409	exon8	c.C938T	p.A313V	.	.	193	7	67	0	G|0.738;A|0.262	90
MEI1	150365	bcgsc.ca	37	22	42154430	42154430	+	Silent	SNP	T	T	C	rs8141939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEI1	NM_152513	exon18	c.T2013C	p.P671P	.	.	133	13	53	0	T|0.909;C|0.091	70
MEI1	150365	bcgsc.ca	37	22	42177816	42177816	+	Silent	SNP	C	C	A	rs6002481	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEI1	NM_152513	exon24	c.C3054A	p.S1018S	.	.	304	22	58	0	C|0.832;A|0.168	70
MEI1	150365	ucsc.edu;bcgsc.ca	37	22	42191540	42191540	+	Silent	SNP	C	C	T	rs6002488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEI1	NM_152513	exon29	c.C3660T	p.F1220F	.	.	138	15	54	0	C|0.830;T|0.170	70
MEIOB	254528	bcgsc.ca	37	16	1894961	1894961	+	Missense_Mutation	SNP	A	A	G	rs9806945	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163560	exon10	c.T782C	p.I261T	.	.	396	9	120	0	A|0.839;G|0.161	.
MEP1A	4224	bcgsc.ca	37	6	46802370	46802370	+	Silent	SNP	G	G	A	rs4714952	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEP1A	NM_005588	exon12	c.G1665A	p.T555T	.	.	188	16	59	0	G|0.299;A|0.701	183
MEP1A	4224	bcgsc.ca	37	6	46803018	46803018	+	Missense_Mutation	SNP	A	A	T	rs74742999		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEP1A	NM_005588	exon13	c.A1816T	p.T606S	.	.	321	19	77	0	.	183
MEP1A	4224	bcgsc.ca	37	6	46803102	46803102	+	Missense_Mutation	SNP	A	A	G	rs2297019	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEP1A	NM_005588	exon13	c.A1900G	p.M634V	.	.	130	9	57	0	A|0.676;G|0.324	183
MEPE	56955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88766686	88766686	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEPE	NM_020203	exon4	c.C666T	p.Y222Y	.	.	102	30	47	0	.	93
MERTK	10461	bcgsc.ca	37	2	112686988	112686988	+	Missense_Mutation	SNP	G	G	A	rs13027171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MERTK	NM_006343	exon2	c.G353A	p.S118N	.	.	380	20	148	0	G|0.804;A|0.196	1463
MERTK	10461	bcgsc.ca	37	2	112751928	112751928	+	Missense_Mutation	SNP	G	G	A	rs7604639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MERTK	NM_006343	exon9	c.G1397A	p.R466K	.	.	160	14	78	0	G|0.415;A|0.585	1463
MERTK	10461	bcgsc.ca	37	2	112755001	112755001	+	Missense_Mutation	SNP	A	A	G	rs2230515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MERTK	NM_006343	exon10	c.A1552G	p.I518V	.	.	187	16	78	0	A|0.416;G|0.584	1463
METTL11B	149281	bcgsc.ca	37	1	170135760	170135760	+	Missense_Mutation	SNP	T	T	C	rs6427235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136107	exon3	c.T448C	p.S150P	.	.	248	8	79	0	T|0.718;C|0.282	.
METTL11B	149281	bcgsc.ca	37	1	170135765	170135765	+	Silent	SNP	T	T	C	rs6669514	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136107	exon3	c.T453C	p.F151F	.	.	260	10	77	0	T|0.746;C|0.254	.
METTL13	51603	bcgsc.ca	37	1	171751236	171751236	+	Silent	SNP	T	T	C	rs2294720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	METTL13	NM_015935	exon1	c.T129C	p.H43H	.	.	83	4	41	0	T|0.439;C|0.561	91
METTL15	196074	bcgsc.ca	37	11	28352229	28352229	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	METTL15	NM_001113528	exon7	c.A1065G	p.Q355Q	.	.	349	10	180	0	.	91
METTL18	92342	bcgsc.ca	37	1	169762807	169762807	+	Missense_Mutation	SNP	T	T	G	rs10489177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	METTL18	NM_033418	exon2	c.A30C	p.E10D	.	.	339	19	110	0	T|0.802;G|0.198	90
METTL21D	79609	bcgsc.ca	37	14	50582566	50582566	+	Silent	SNP	G	G	A	rs74049153	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	METTL21D	NM_024558	exon3	c.C441T	p.Y147Y	.	.	241	10	64	0	G|0.962;A|0.038	90
METTL3	56339	bcgsc.ca	37	14	21967916	21967916	+	Silent	SNP	A	A	G	rs1139130	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	METTL3	NM_019852	exon7	c.T1335C	p.N445N	.	.	292	9	130	0	A|0.488;G|0.512	92
MEX3C	51320	bcgsc.ca	37	18	48703215	48703215	+	Missense_Mutation	SNP	A	A	C	rs113863556	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MEX3C	NM_016626	exon2	c.T1486G	p.S496A	.	.	167	8	70	0	A|0.995;C|0.005	659
MFAP1	4236	bcgsc.ca	37	15	44102010	44102010	+	Silent	SNP	A	A	C	rs2228368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFAP1	NM_005926	exon7	c.T990G	p.A330A	.	.	463	26	207	0	T|0.304;G|0.088	226
MFAP3	4238	bcgsc.ca	37	5	153429459	153429459	+	Silent	SNP	T	T	C	rs690592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFAP3	NM_005927	exon2	c.T177C	p.D59D	.	.	175	14	96	1	T|0.355;C|0.645	90
MFAP3	4238	bcgsc.ca	37	5	153432733	153432733	+	Silent	SNP	T	T	C	rs2578386	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFAP3	NM_005927	exon3	c.T549C	p.A183A	.	.	208	21	107	1	T|0.347;C|0.653	90
MFAP3	4238	bcgsc.ca	37	5	153432970	153432970	+	Silent	SNP	C	C	T	rs2255493	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFAP3	NM_005927	exon3	c.C786T	p.D262D	.	.	180	13	76	0	C|0.346;T|0.654	90
MFHAS1	9258	bcgsc.ca	37	8	8747821	8747821	+	Silent	SNP	G	G	T	rs74319020	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFHAS1	NM_004225	exon1	c.C2748A	p.I916I	.	.	60	4	35	0	G|0.999;T|0.001	90
MFRP	83552	bcgsc.ca	37	11	119217067	119217067	+	Silent	SNP	A	A	G	rs77225944	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFRP	NM_031433	exon2	c.T72C	p.P24P	.	.	196	11	57	0	A|0.996;G|0.004	44
MFSD10	10227	ucsc.edu;bcgsc.ca	37	4	2934920	2934920	+	Silent	SNP	T	T	G	rs34745961	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFSD10	NM_001120	exon3	c.A285C	p.A95A	.	.	122	18	73	0	T|0.981;G|0.019	68
MFSD4	148808	bcgsc.ca	37	1	205554085	205554085	+	Missense_Mutation	SNP	G	G	C	rs7526132	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFSD4	NM_181644	exon5	c.G941C	p.G314A	.	.	180	13	59	0	G|0.514;C|0.486	92
MFSD4	148808	bcgsc.ca	37	1	205554095	205554095	+	Silent	SNP	A	A	C	rs7515820	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFSD4	NM_181644	exon5	c.A951C	p.V317V	.	.	171	13	59	0	A|0.570;C|0.430	92
MFSD5	84975	bcgsc.ca	37	12	53647927	53647927	+	Silent	SNP	G	G	A	rs7973133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFSD5	NM_001170790	exon2	c.G1629A	p.L543L	.	.	415	12	161	0	G|0.990;A|0.010	93
MFSD9	84804	bcgsc.ca	37	2	103343346	103343346	+	Missense_Mutation	SNP	C	C	A	rs7601509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MFSD9	NM_032718	exon4	c.G385T	p.A129S	.	.	194	11	98	0	C|0.986;A|0.014	155
MGAM	8972	bcgsc.ca	37	7	141732665	141732665	+	Missense_Mutation	SNP	C	C	T	rs10266732	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MGAM	NM_004668	exon14	c.C1625T	p.S542L	.	.	389	24	132	1	C|0.899;T|0.101	70
MGAM	8972	bcgsc.ca	37	7	141750543	141750543	+	Missense_Mutation	SNP	A	A	G	rs200893409		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MGAM	NM_004668	exon24	c.A2684G	p.N895S	.	.	339	10	124	0	.	70
MGAM	8972	bcgsc.ca	37	7	141755358	141755358	+	Silent	SNP	T	T	C	rs67998329	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MGAM	NM_004668	exon28	c.T3315C	p.I1105I	.	.	273	15	91	0	T|0.776;C|0.224	70
MGAM	8972	bcgsc.ca	37	7	141759676	141759676	+	Silent	SNP	T	T	C	rs62477620	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MGAM	NM_004668	exon33	c.T3969C	p.N1323N	.	.	364	10	97	0	T|0.812;C|0.188	70
MIA2	117153	bcgsc.ca	37	14	39703324	39703324	+	Silent	SNP	A	A	G	rs7141840	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MIA2	NM_054024	exon1	c.A6G	p.A2A	.	.	277	23	70	0	A|0.389;G|0.611	154
MIA2	117153	bcgsc.ca	37	14	39722023	39722023	+	Missense_Mutation	SNP	G	G	C	rs10134365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MIA2	NM_054024	exon5	c.G1639C	p.D547H	.	.	111	7	49	0	G|0.714;C|0.286	154
MIA2	117153	hgsc.bcm.edu;bcgsc.ca	37	14	39722329	39722329	+	Missense_Mutation	SNP	A	A	G	rs61732342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MIA2	NM_054024	exon6	c.A1841G	p.D614G	.	.	368	17	141	0	A|0.995;G|0.005	154
MIA3	375056	bcgsc.ca	37	1	222833538	222833538	+	Silent	SNP	C	C	G	rs2291835	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MIA3	NM_198551	exon24	c.C4995G	p.G1665G	.	.	233	7	92	0	C|0.832;G|0.168	98
MICA	100507436	bcgsc.ca	37	6	31378497	31378497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001177519	exon2	c.A248G	p.D83G	.	.	132	6	57	0	.	.
MICA	100507436	hgsc.bcm.edu;bcgsc.ca	37	6	31378932	31378932	+	Missense_Mutation	SNP	G	G	A	rs41556715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001177519	exon3	c.G409A	p.G137R	.	.	172	7	62	0	G|0.989;A|0.011	.
MICAL3	57553	bcgsc.ca	37	22	18305752	18305752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MICAL3	NM_015241	exon23	c.G3268A	p.D1090N	.	.	230	6	47	0	.	68
MICALL2	79778	bcgsc.ca	37	7	1482009	1482009	+	Silent	SNP	G	G	C	rs61744261	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MICALL2	NM_182924	exon7	c.C1530G	p.L510L	.	.	182	7	51	0	G|0.838;C|0.162	90
MICALL2	79778	bcgsc.ca	37	7	1482101	1482101	+	Missense_Mutation	SNP	C	C	G	rs12540098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MICALL2	NM_182924	exon7	c.G1438C	p.A480P	.	.	206	19	58	0	C|0.806;G|0.194	90
MID1	4281	bcgsc.ca	37	X	10437792	10437792	+	Silent	SNP	G	G	A	rs16986145	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MID1	NM_001193278	exon7	c.C1383T	p.S461S	.	.	83	6	32	0	0|0.004;A|0.075	229
MIF4GD	57409	bcgsc.ca	37	17	73263012	73263012	+	Missense_Mutation	SNP	C	C	T	rs61739324	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MIF4GD	NM_001242498	exon7	c.G601A	p.E201K	.	.	130	8	41	0	C|0.937;T|0.063	91
MINK1	50488	bcgsc.ca	37	17	4787720	4787720	+	Silent	SNP	C	C	T	rs6502827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MINK1	NM_170663	exon5	c.C369T	p.N123N	.	.	400	9	158	1	C|0.985;T|0.015	943
MINOS1	440574	bcgsc.ca	37	1	19950062	19950062	+	Silent	SNP	T	T	C	rs1737428	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001032363	exon3	c.T207C	p.H69H	.	.	99	6	38	0	T|0.661;C|0.339	.
MIR301B	100126318	ucsc.edu;mdanderson.org	37	22	22007281	22007281	+	RNA	SNP	T	T	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	89	18	24	0	.	.
MIR520H	574493	bcgsc.ca	37	19	54245788	54245788	+	RNA	SNP	G	G	A	rs56013413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	220	15	91	0	G|0.937;A|0.063	.
MIR659	724029	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	38243768	38243768	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	344	93	146	0	.	.
MIRLET7BHG	400931	bcgsc.ca	37	22	46501373	46501373	+	RNA	SNP	A	A	G	rs12159652	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	279	16	127	0	A|0.782;G|0.218	.
MIRLET7BHG	400931	bcgsc.ca	37	22	46505652	46505652	+	RNA	SNP	C	C	G	rs58819475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	93	5	31	0	C|0.910;G|0.090	.
MIRLET7BHG	400931	bcgsc.ca	37	22	46505806	46505806	+	RNA	SNP	C	C	G	rs12159905	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	118	6	41	0	C|0.958;G|0.042	.
MITF	4286	bcgsc.ca	37	3	69928510	69928510	+	Silent	SNP	G	G	A	rs9849776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MITF	NM_198159	exon2	c.G330A	p.T110T	.	.	256	8	66	0	G|0.983;A|0.017	524
MKI67	4288	bcgsc.ca	37	10	129903802	129903802	+	Missense_Mutation	SNP	A	A	G	rs11016073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MKI67	NM_002417	exon13	c.T6302C	p.I2101T	.	.	1108	36	371	0	A|0.842;G|0.158	519
MKI67	4288	bcgsc.ca	37	10	129904560	129904560	+	Silent	SNP	C	C	T	rs2853346	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MKI67	NM_002417	exon13	c.G5544A	p.T1848T	.	.	1008	39	427	1	T|0.166;G|0.285;C|0.432;A|0.117	519
MKI67	4288	bcgsc.ca	37	10	129904917	129904917	+	Silent	SNP	G	G	A	rs1894410	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MKI67	NM_002417	exon13	c.C5187T	p.N1729N	.	.	331	9	151	0	G|0.863;N|0.000	519
MKKS	8195	bcgsc.ca	37	20	10386013	10386013	+	Missense_Mutation	SNP	C	C	A	rs1545	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MKKS	NM_170784	exon6	c.G1595T	p.G532V	.	.	134	6	69	0	C|0.839;A|0.161	90
MKKS	8195	bcgsc.ca	37	20	10393629	10393629	+	Silent	SNP	G	G	A	rs17852625	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MKKS	NM_170784	exon3	c.C534T	p.I178I	.	.	81	4	47	0	G|0.856;A|0.144	90
MKKS	8195	bcgsc.ca	37	20	10394046	10394046	+	Silent	SNP	G	G	A	rs16991547	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MKKS	NM_170784	exon3	c.C117T	p.P39P	.	.	176	14	73	0	G|0.800;A|0.200	90
MLANA	2315	ucsc.edu;bcgsc.ca	37	9	5892525	5892525	+	Silent	SNP	C	C	T	rs2233178	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLANA	NM_005511	exon2	c.C51T	p.H17H	.	.	104	12	29	0	C|0.863;T|0.137	90
MLF1IP	79682	bcgsc.ca	37	4	185623529	185623529	+	Silent	SNP	T	T	C	rs35102949	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLF1IP	NM_024629	exon9	c.A864G	p.Q288Q	.	.	145	5	67	0	T|0.942;C|0.058	90
MLF1IP	79682	bcgsc.ca	37	4	185637699	185637699	+	Missense_Mutation	SNP	A	A	G	rs6552804	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLF1IP	NM_024629	exon6	c.T470C	p.I157T	.	.	598	21	201	0	A|0.825;G|0.175	90
MLL2	8085	bcgsc.ca	37	12	49427652	49427652	+	Silent	SNP	C	C	T	rs3782357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL2	NM_003482	exon39	c.G10836A	p.Q3612Q	.	.	81	5	34	0	C|0.589;T|0.411	612
MLL2	8085	bcgsc.ca	37	12	49434365	49434365	+	Silent	SNP	A	A	G	rs111305262		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL2	NM_003482	exon31	c.T7188C	p.C2396C	.	.	145	8	68	1	A|0.989;G|0.011	612
MLL2	8085	bcgsc.ca	37	12	49434746	49434746	+	Silent	SNP	G	G	A	rs73302197		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL2	NM_003482	exon31	c.C6807T	p.S2269S	.	.	195	7	52	0	G|0.991;A|0.009	612
MLL2	8085	bcgsc.ca	37	12	49435905	49435905	+	Missense_Mutation	SNP	T	T	C	rs190995850		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL2	NM_003482	exon28	c.A6076G	p.I2026V	.	.	158	12	41	0	T|0.996;C|0.004	612
MLL3	58508	bcgsc.ca	37	7	151873853	151873853	+	Silent	SNP	C	C	T	rs6464211	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL3	NM_170606	exon38	c.G8685A	p.Q2895Q	.	.	286	27	116	0	C|0.643;T|0.357	1398
MLL3	58508	bcgsc.ca	37	7	151874498	151874498	+	Silent	SNP	C	C	T	rs10252263	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL3	NM_170606	exon38	c.G8040A	p.Q2680Q	.	.	180	6	64	0	C|0.865;T|0.135	1398
MLL3	58508	bcgsc.ca	37	7	151962269	151962269	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL3	NM_170606	exon8	c.G1038A	p.V346V	.	.	345	26	97	1	.	1398
MLL3	58508	hgsc.bcm.edu;bcgsc.ca	37	7	151877889	151877889	+	Silent	SNP	G	G	C	rs17173370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL3	NM_170606	exon36	c.C7056G	p.V2352V	.	.	283	12	133	0	G|0.954;C|0.046	1398
MLL3	58508	hgsc.bcm.edu;bcgsc.ca	37	7	151879584	151879584	+	Silent	SNP	T	T	C	rs61730538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL3	NM_170606	exon36	c.A5361G	p.Q1787Q	.	.	460	20	133	0	T|0.964;C|0.036	1398
MLL3	58508	hgsc.bcm.edu;bcgsc.ca	37	7	151884447	151884447	+	Silent	SNP	C	C	T	rs61730536	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL3	NM_170606	exon33	c.G4908A	p.T1636T	.	.	158	9	54	0	C|0.962;T|0.038	1398
MLL5	55904	bcgsc.ca	37	7	104717517	104717517	+	Silent	SNP	C	C	T	rs2240455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLL5	NM_018682	exon9	c.C876T	p.Y292Y	.	.	250	18	104	0	C|0.620;T|0.380	93
MLLT6	4302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36876805	36876805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLLT6	NM_005937	exon15	c.A2336G	p.Y779C	.	.	68	26	36	0	.	659
MLPH	79083	bcgsc.ca	37	2	238449007	238449007	+	Missense_Mutation	SNP	T	T	C	rs3817362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLPH	NM_024101	exon10	c.T1121C	p.V374A	.	.	171	9	68	0	T|0.643;C|0.357	91
MLPH	79083	bcgsc.ca	37	2	238449505	238449505	+	Missense_Mutation	SNP	C	C	T	rs58256353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MLPH	NM_024101	exon11	c.C1351T	p.P451S	.	.	195	8	137	0	C|0.940;T|0.060	91
MMP10	4319	bcgsc.ca	37	11	102649954	102649954	+	Silent	SNP	A	A	G	rs17860950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MMP10	NM_002425	exon3	c.T486C	p.F162F	.	.	144	11	64	0	A|0.906;G|0.094	713
MMP3	4314	bcgsc.ca	37	11	102709425	102709425	+	Silent	SNP	A	A	G	rs520540	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MMP3	NM_002422	exon8	c.T1086C	p.A362A	.	.	128	6	76	0	A|0.461;G|0.539	226
MMP3	4314	bcgsc.ca	37	11	102713465	102713465	+	Silent	SNP	A	A	G	rs602128	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MMP3	NM_002422	exon2	c.T288C	p.D96D	.	.	143	8	75	0	A|0.461;G|0.539	226
MMP9	4318	bcgsc.ca	37	20	44640225	44640225	+	Missense_Mutation	SNP	A	A	G	rs17576	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MMP9	NM_004994	exon6	c.A836G	p.Q279R	.	.	95	6	44	1	A|0.578;G|0.422	652
MMRN1	22915	bcgsc.ca	37	4	90830473	90830473	+	Silent	SNP	T	T	C	rs61733795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MMRN1	NM_007351	exon2	c.T670C	p.L224L	.	.	175	6	52	0	T|0.985;C|0.015	94
MOB3A	126308	ucsc.edu;bcgsc.ca	37	19	2078488	2078488	+	Silent	SNP	T	T	C	rs2074894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_130807	exon3	c.A72G	p.P24P	.	.	82	8	30	0	T|0.597;C|0.403	.
MOCOS	55034	bcgsc.ca	37	18	33780013	33780013	+	Missense_Mutation	SNP	C	C	T	rs77632154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MOCOS	NM_017947	exon4	c.C667T	p.R223W	.	.	281	20	80	1	C|0.999;T|0.001	91
MOCOS	55034	bcgsc.ca	37	18	33848580	33848580	+	Missense_Mutation	SNP	G	G	A	rs79823152	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MOCOS	NM_017947	exon15	c.G2599A	p.V867M	.	.	359	11	91	0	G|0.988;A|0.012	91
MOG	4340	mdanderson.org	37	6	29625001	29625001	+	Silent	SNP	A	A	T	rs3130250	byfrequency;alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MOG	NM_001170418	exon1	c.A15T	p.S5S	.	.	68	22	26	0	A|0.108;G|0.892	515
MOGAT1	116255	bcgsc.ca	37	2	223559089	223559089	+	Missense_Mutation	SNP	T	T	C	rs1868024	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MOGAT1	NM_058165	exon4	c.T487C	p.S163P	.	.	271	8	119	0	C|0.221;N|0.001	67
MON2	23041	bcgsc.ca	37	12	62894636	62894636	+	Silent	SNP	T	T	A	rs17120341	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MON2	NM_015026	exon6	c.T639A	p.A213A	.	.	323	18	123	0	T|0.868;A|0.132	514
MON2	23041	hgsc.bcm.edu;bcgsc.ca	37	12	62902209	62902209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MON2	NM_015026	exon8	c.G933C	p.M311I	.	.	320	13	144	0	.	514
MORC1	27136	bcgsc.ca	37	3	108754260	108754260	+	Silent	SNP	A	A	G	rs3762696	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MORC1	NM_014429	exon15	c.T1386C	p.D462D	.	.	179	6	57	0	G|0.422;A|0.578	98
MORF4L1	10933	bcgsc.ca	37	15	79185898	79185898	+	Silent	SNP	C	C	A	rs1435163	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MORF4L1	NM_206839	exon10	c.C675A	p.A225A	.	.	464	19	189	0	C|0.877;A|0.123	90
MOSPD2	158747	bcgsc.ca	37	X	14933807	14933807	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MOSPD2	NM_152581	exon12	c.A1107G	p.P369P	.	.	223	7	74	0	.	130
MOV10L1	54456	bcgsc.ca	37	22	50537901	50537901	+	Silent	SNP	C	C	T	rs12169319	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MOV10L1	NM_018995	exon3	c.C312T	p.D104D	.	.	344	15	93	0	C|0.947;T|0.053	93
MPDU1	9526	hgsc.bcm.edu;bcgsc.ca	37	17	7490798	7490798	+	Missense_Mutation	SNP	G	G	A	rs16956808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPDU1	NM_004870	exon7	c.G673A	p.G225S	.	.	101	8	39	0	G|0.960;A|0.040	90
MPHOSPH10	10199	bcgsc.ca	37	2	71360282	71360282	+	Missense_Mutation	SNP	G	G	A	rs13010513	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPHOSPH10	NM_005791	exon2	c.G344A	p.R115H	.	.	199	7	117	0	G|0.825;A|0.175	93
MPHOSPH8	54737	bcgsc.ca	37	13	20224387	20224387	+	Silent	SNP	A	A	G	rs9578176	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPHOSPH8	NM_017520	exon5	c.A1563G	p.A521A	.	.	167	6	90	0	A|0.886;G|0.114	68
MPO	4353	bcgsc.ca	37	17	56357818	56357818	+	Missense_Mutation	SNP	C	C	A	rs7208693	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPO	NM_000250	exon2	c.G157T	p.V53F	.	.	151	10	47	0	C|0.893;A|0.107	156
MPP1	4354	bcgsc.ca	37	X	154020114	154020114	+	Silent	SNP	C	C	A	rs1126762	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPP1	NM_001166461	exon3	c.G255T	p.T85T	.	.	110	14	37	0	0|0.014;T|0.117	132
MPP4	58538	bcgsc.ca	37	2	202512449	202512449	+	Missense_Mutation	SNP	C	C	T	rs11894115	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPP4	NM_033066	exon21	c.G1684A	p.V562I	.	.	312	14	132	0	C|0.829;T|0.171	22
MPP6	51678	bcgsc.ca	37	7	24703298	24703298	+	Silent	SNP	G	G	A	rs1053962	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPP6	NM_016447	exon7	c.G741A	p.E247E	.	.	206	15	94	0	A|0.555;C|0.001	90
MPPE1	65258	bcgsc.ca	37	18	11893567	11893567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPPE1	NM_001242904	exon3	c.A290G	p.Q97R	.	.	67	4	35	0	.	90
MPZL3	196264	bcgsc.ca	37	11	118106253	118106253	+	Missense_Mutation	SNP	A	A	C	rs36102742	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MPZL3	NM_198275	exon4	c.T503G	p.V168G	.	.	102	5	45	0	A|0.974;C|0.026	68
MR1	3140	bcgsc.ca	37	1	181019202	181019202	+	Silent	SNP	C	C	T	rs61731104	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MR1	NM_001195035	exon4	c.C384T	p.T128T	.	.	323	14	120	0	C|0.967;T|0.033	91
MR1	3140	bcgsc.ca	37	1	181019253	181019253	+	Silent	SNP	T	T	C	rs61731103	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MR1	NM_001195035	exon4	c.T435C	p.N145N	.	.	336	19	129	0	T|0.967;C|0.033	91
MRAP2	112609	bcgsc.ca	37	6	84799059	84799059	+	Silent	SNP	C	C	T	rs9449776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRAP2	NM_138409	exon4	c.C477T	p.N159N	.	.	138	11	53	0	C|0.783;T|0.217	92
MRAP2	112609	bcgsc.ca	37	6	84799185	84799185	+	Silent	SNP	C	C	T	rs2875382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRAP2	NM_138409	exon4	c.C603T	p.H201H	.	.	110	6	41	0	C|0.654;T|0.346	92
MRAS	22808	bcgsc.ca	37	3	138091902	138091902	+	Silent	SNP	A	A	G	rs16848033	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRAS	NM_012219	exon2	c.A177G	p.Q59Q	.	.	101	6	42	0	A|0.969;G|0.031	848
MRC1	4360	bcgsc.ca	37	10	17905664	17905664	+	Silent	SNP	G	G	C	rs34388943		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRC1	NM_002438	exon11	c.G1755C	p.R585R	.	.	438	17	169	0	.	68
MRE11A	4361	bcgsc.ca	37	11	94203652	94203652	+	Missense_Mutation	SNP	G	G	C	rs115244417	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRE11A	NM_005591	exon9	c.C1002G	p.S334R	.	.	209	7	126	0	G|0.981;C|0.019	722
MRGPRX2	117194	bcgsc.ca	37	11	19077904	19077904	+	Missense_Mutation	SNP	T	T	G	rs11024970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRGPRX2	NM_054030	exon2	c.A46C	p.N16H	.	.	127	6	41	0	T|0.900;G|0.100	91
MRI1	84245	bcgsc.ca	37	19	13882941	13882941	+	Missense_Mutation	SNP	G	G	C	rs10402855	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRI1	NM_001031727	exon6	c.G956C	p.G319A	.	.	156	7	48	0	G|0.940;C|0.060	91
MROH2B	133558	bcgsc.ca	37	5	41054934	41054934	+	Silent	SNP	A	A	G	rs325874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173489	exon11	c.T1042C	p.L348L	.	.	207	15	88	0	A|0.778;G|0.222	.
MROH9	80133	bcgsc.ca	37	1	170928671	170928671	+	Missense_Mutation	SNP	T	T	C	rs2294740	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025063	exon5	c.T221C	p.V74A	.	.	133	9	45	1	T|0.784;C|0.216	.
MROH9	80133	bcgsc.ca	37	1	170959029	170959029	+	Silent	SNP	C	C	T	rs16863922	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025063	exon11	c.C913T	p.L305L	.	.	261	11	68	0	C|0.805;T|0.195	.
MROH9	80133	bcgsc.ca	37	1	170959088	170959088	+	Silent	SNP	C	C	T	rs28634500	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025063	exon11	c.C972T	p.C324C	.	.	284	17	60	0	C|0.791;T|0.209	.
MROH9	80133	bcgsc.ca	37	1	170965681	170965681	+	Silent	SNP	T	T	C	rs9427213	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_025063	exon14	c.T1371C	p.N457N	.	.	402	22	165	0	T|0.881;C|0.119	.
MROH9	80133	bcgsc.ca	37	1	170985408	170985408	+	Silent	SNP	C	C	T	rs16863939	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163629	exon17	c.C1839T	p.N613N	.	.	228	16	56	0	C|0.934;T|0.066	.
MRPL14	64928	bcgsc.ca	37	6	44081718	44081718	+	Silent	SNP	G	G	A	rs6883	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL14	NM_032111	exon3	c.C300T	p.F100F	.	.	146	15	39	0	G|0.365;A|0.635	91
MRPL22	29093	bcgsc.ca	37	5	154346259	154346259	+	Silent	SNP	A	A	G	rs14922	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL22	NM_014180	exon7	c.A423G	p.S141S	.	.	159	15	47	0	T|0.349;G|0.069	90
MRPL37	51253	bcgsc.ca	37	1	54683856	54683856	+	Silent	SNP	C	C	G	rs15921	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL37	NM_016491	exon7	c.C1206G	p.G402G	.	.	260	13	103	0	C|0.703;G|0.297	90
MRPL39	54148	bcgsc.ca	37	21	26976222	26976222	+	Silent	SNP	C	C	T	rs7278168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL39	NM_017446	exon3	c.G306A	p.K102K	.	.	338	30	152	0	C|0.905;T|0.095	90
MRPL39	54148	bcgsc.ca	37	21	26976237	26976237	+	Silent	SNP	C	C	T	rs7278284	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL39	NM_017446	exon3	c.G291A	p.E97E	.	.	326	22	147	0	C|0.914;T|0.086	90
MRPL40	64976	bcgsc.ca	37	22	19423250	19423250	+	Missense_Mutation	SNP	G	G	A	rs7575	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL40	NM_003776	exon4	c.G386A	p.R129H	.	.	122	10	49	0	G|0.776;A|0.224	90
MRPL43	84545	bcgsc.ca	37	10	102746503	102746503	+	Silent	SNP	C	C	T	rs2863095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL43	NM_032112	exon3	c.G468A	p.V156V	.	.	50	4	29	0	C|0.704;T|0.296	91
MRPL45	84311	bcgsc.ca	37	17	36474601	36474601	+	Silent	SNP	A	A	G	rs59939216	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL45	NM_032351	exon5	c.A477G	p.R159R	.	.	408	14	144	0	A|0.873;G|0.127	90
MRPL46	26589	hgsc.bcm.edu;bcgsc.ca	37	15	89010407	89010407	+	Missense_Mutation	SNP	C	C	T	rs147896985	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL46	NM_022163	exon1	c.G202A	p.E68K	.	.	171	7	55	0	C|0.987;T|0.013	90
MRPL55	128308	bcgsc.ca	37	1	228295527	228295527	+	Missense_Mutation	SNP	G	G	A	rs822730	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPL55	NM_181462	exon5	c.C178T	p.R60C	.	.	121	8	38	0	G|0.945;A|0.055	90
MRPS17	51373	bcgsc.ca	37	7	56022810	56022810	+	Missense_Mutation	SNP	G	G	C	rs73360364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPS17	NM_015969	exon3	c.G332C	p.S111T	.	.	167	9	56	0	G|0.961;C|0.039	90
MRPS31	10240	bcgsc.ca	37	13	41323397	41323397	+	Missense_Mutation	SNP	C	C	T	rs13508	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MRPS31	NM_005830	exon6	c.G835A	p.D279N	.	.	145	6	64	0	T|0.095;G|0.323;C|0.524;A|0.057	226
MS4A5	64232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60197210	60197210	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MS4A5	NM_023945	exon1	c.A63G	p.S21S	.	.	42	14	35	0	.	154
MS4A6E	245802	bcgsc.ca	37	11	60102384	60102384	+	Missense_Mutation	SNP	A	A	G	rs2304935	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MS4A6E	NM_139249	exon1	c.A16G	p.I6V	.	.	343	22	177	0	A|0.705;G|0.295	90
MS4A6E	245802	bcgsc.ca	37	11	60102396	60102396	+	Missense_Mutation	SNP	A	A	G	rs2304934	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MS4A6E	NM_139249	exon1	c.A28G	p.T10A	.	.	405	21	195	0	A|0.691;G|0.309	90
MS4A6E	245802	bcgsc.ca	37	11	60102507	60102507	+	Missense_Mutation	SNP	G	G	T	rs2304933	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MS4A6E	NM_139249	exon1	c.G139T	p.V47F	.	.	297	16	170	0	G|0.705;T|0.295	90
MSH5	4439	bcgsc.ca	37	6	31729925	31729925	+	Missense_Mutation	SNP	C	C	T	rs1802127	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MSH5	NM_172165	exon24	c.C2359T	p.P787S	.	.	235	10	100	0	C|0.942;T|0.058	661
MSLN	10232	bcgsc.ca	37	16	817407	817407	+	Silent	SNP	C	C	T	rs72773454	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MSLN	NM_013404	exon15	c.C1557T	p.L519L	.	.	433	20	118	0	C|0.919;T|0.081	91
MSS51	118490	bcgsc.ca	37	10	75184455	75184455	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001024593	exon7	c.T1239C	p.P413P	.	.	221	6	96	0	.	.
MST1	4485	bcgsc.ca	37	3	49723784	49723784	+	Silent	SNP	C	C	A	rs9713651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MST1	NM_020998	exon8	c.G978T	p.P326P	.	.	178	7	88	0	C|0.600;A|0.400	278
MT1F	4494	hgsc.bcm.edu;bcgsc.ca	37	16	56691995	56691995	+	Missense_Mutation	SNP	G	G	T	rs76144808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MT1F	NM_005949	exon1	c.G25T	p.A9S	.	.	159	7	67	0	G|0.991;T|0.009	44
MTAP	4507	bcgsc.ca	37	9	21816758	21816758	+	Missense_Mutation	SNP	G	G	A	rs7023954	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTAP	NM_002451	exon3	c.G166A	p.V56I	.	.	140	8	89	0	G|0.589;A|0.411	651
MTFR2	113115	bcgsc.ca	37	6	136560617	136560617	+	Missense_Mutation	SNP	G	G	A	rs58671808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_138419	exon6	c.C856T	p.R286C	.	.	344	10	184	0	G|0.995;A|0.005	.
MTFR2	113115	bcgsc.ca	37	6	136560948	136560948	+	Silent	SNP	G	G	A	rs10484485	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_138419	exon6	c.C525T	p.G175G	.	.	115	6	54	0	G|0.939;A|0.061	.
MTHFD2	10797	hgsc.bcm.edu;bcgsc.ca	37	2	74438406	74438406	+	Missense_Mutation	SNP	A	A	G	rs183389698		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTHFD2	NM_006636	exon6	c.A751G	p.I251V	.	.	246	12	92	0	A|0.980;G|0.020	90
MTMR2	8898	bcgsc.ca	37	11	95580926	95580926	+	Silent	SNP	G	G	A	rs566204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTMR2	NM_016156	exon10	c.C1131T	p.T377T	.	.	240	12	118	0	G|0.715;A|0.285	91
MTMR2	8898	bcgsc.ca	37	11	95657111	95657111	+	Missense_Mutation	SNP	T	T	G	rs3824874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTMR2	NM_016156	exon1	c.A8C	p.K3T	.	.	243	16	103	0	G|0.251;N|0.000	91
MTMR3	8897	bcgsc.ca	37	22	30403996	30403996	+	Silent	SNP	C	C	T	rs2074204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTMR3	NM_153050	exon11	c.C984T	p.A328A	.	.	261	14	89	0	C|0.678;T|0.322	292
MTNR1A	4543	bcgsc.ca	37	4	187455261	187455261	+	Missense_Mutation	SNP	A	A	G	rs7654853	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTNR1A	NM_005958	exon2	c.T635C	p.I212T	.	.	178	10	89	0	A|0.974;G|0.026	524
MTOR	2475	hgsc.bcm.edu	37	1	11190693	11190694	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTOR	NM_004958	exon39	c.5506_5507insC	p.A1836fs	.	.	181	14	99	0	.	1439
MTRR	4552	bcgsc.ca	37	5	7897191	7897191	+	Missense_Mutation	SNP	C	C	T	rs10380	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTRR	NM_024010	exon14	c.C1864T	p.H622Y	.	.	135	8	67	0	C|0.811;T|0.189	91
MTRR	4552	bcgsc.ca	37	5	7897283	7897283	+	Silent	SNP	G	G	A	rs12347	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTRR	NM_024010	exon14	c.G1956A	p.V652V	.	.	125	7	62	0	G|0.782;A|0.218	91
MTTP	4547	bcgsc.ca	37	4	100512412	100512412	+	Silent	SNP	T	T	C	rs982424	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTTP	NM_000253	exon6	c.T522C	p.C174C	.	.	183	19	68	0	T|0.855;C|0.145	93
MTUS1	57509	bcgsc.ca	37	8	17612064	17612064	+	Missense_Mutation	SNP	A	A	C	rs75253845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS1	NM_001001924	exon2	c.T1253G	p.M418R	.	.	144	7	81	0	A|0.977;C|0.023	92
MTUS1	57509	bcgsc.ca	37	8	17612875	17612875	+	Missense_Mutation	SNP	A	A	G	rs3739407	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS1	NM_001001924	exon2	c.T442C	p.C148R	.	.	113	7	62	0	A|0.300;G|0.700	92
MTUS1	57509	bcgsc.ca	37	8	17613094	17613094	+	Missense_Mutation	SNP	G	G	T	rs61733703	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS1	NM_001001924	exon2	c.C223A	p.Q75K	.	.	158	7	73	0	G|0.994;T|0.006	92
MTUS1	57509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17613238	17613238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS1	NM_001001924	exon2	c.C79A	p.H27N	.	.	122	55	69	1	.	92
MTUS2	23281	bcgsc.ca	37	13	29600040	29600040	+	Missense_Mutation	SNP	C	C	A	rs73441370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS2	NM_001033602	exon1	c.C1235A	p.S412Y	.	.	124	8	57	0	C|0.967;A|0.033	218
MTUS2	23281	bcgsc.ca	37	13	29600415	29600415	+	Missense_Mutation	SNP	A	A	G	rs2987346	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS2	NM_001033602	exon1	c.A1610G	p.D537G	.	.	187	6	64	0	A|0.881;G|0.119	218
MTUS2	23281	bcgsc.ca	37	13	29898784	29898784	+	Silent	SNP	G	G	A	rs61999322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MTUS2	NM_001033602	exon5	c.G2871A	p.T957T	.	.	163	11	67	0	G|0.995;A|0.005	218
MUC13	56667	hgsc.bcm.edu;bcgsc.ca	37	3	124632002	124632002	+	Silent	SNP	C	C	T	rs140633855	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC13	NM_033049	exon8	c.G1167A	p.A389A	.	.	170	15	65	0	C|0.998;T|0.002	90
MUC16	94025	bcgsc.ca	37	19	9028373	9028373	+	Missense_Mutation	SNP	G	G	A	rs56396897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC16	NM_024690	exon11	c.C36419T	p.T12140M	.	.	202	10	60	0	G|0.755;A|0.245	566
MUC16	94025	bcgsc.ca	37	19	9070402	9070402	+	Missense_Mutation	SNP	G	G	T	rs12150888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC16	NM_024690	exon3	c.C17044A	p.P5682T	.	.	694	31	250	0	G|0.815;T|0.185	566
MUC16	94025	bcgsc.ca	37	19	9072296	9072296	+	Silent	SNP	G	G	T	rs7254970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC16	NM_024690	exon3	c.C15150A	p.T5050T	.	.	159	6	69	0	G|0.815;T|0.185	566
MUC16	94025	bcgsc.ca	37	19	9074265	9074265	+	Missense_Mutation	SNP	G	G	A	rs10406209	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC16	NM_024690	exon3	c.C13181T	p.T4394I	.	.	487	16	162	0	G|0.826;A|0.174	566
MUC16	94025	bcgsc.ca	37	19	9075346	9075346	+	Missense_Mutation	SNP	T	T	A	rs2591592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC16	NM_024690	exon3	c.A12100T	p.I4034F	.	.	466	15	176	0	T|0.558;A|0.442	566
MUC17	140453	bcgsc.ca	37	7	100675512	100675512	+	Missense_Mutation	SNP	G	G	A	rs10259584	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.G815A	p.G272E	.	.	155	9	50	0	G|0.868;A|0.132	95
MUC17	140453	bcgsc.ca	37	7	100676409	100676409	+	Missense_Mutation	SNP	C	C	T	rs34834039	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.C1712T	p.P571L	.	.	214	6	77	0	C|0.880;T|0.120	95
MUC17	140453	bcgsc.ca	37	7	100677455	100677455	+	Missense_Mutation	SNP	G	G	A	rs61075804	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.G2758A	p.G920R	.	.	190	11	57	0	G|0.904;A|0.096	95
MUC17	140453	bcgsc.ca	37	7	100677556	100677556	+	Silent	SNP	A	A	C	rs4373459	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.A2859C	p.T953T	.	.	210	27	76	1	A|0.947;C|0.053	95
MUC17	140453	bcgsc.ca	37	7	100677816	100677816	+	Missense_Mutation	SNP	G	G	A	rs77671499	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.G3119A	p.G1040E	.	.	180	6	57	0	G|0.981;A|0.019	95
MUC17	140453	bcgsc.ca	37	7	100677944	100677944	+	Missense_Mutation	SNP	T	T	C	rs10264727	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.T3247C	p.S1083P	.	.	197	16	55	1	T|0.902;C|0.098	95
MUC17	140453	bcgsc.ca	37	7	100678740	100678740	+	Missense_Mutation	SNP	T	T	C	rs4269454	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.T4043C	p.L1348P	.	.	165	7	61	0	T|0.821;C|0.179	95
MUC17	140453	bcgsc.ca	37	7	100679136	100679136	+	Missense_Mutation	SNP	T	T	C	rs7780935	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.T4439C	p.V1480A	.	.	159	7	51	0	T|0.875;C|0.125	95
MUC17	140453	bcgsc.ca	37	7	100679809	100679809	+	Silent	SNP	C	C	T	rs4992074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.C5112T	p.S1704S	.	.	136	10	64	0	C|0.823;T|0.177	95
MUC17	140453	bcgsc.ca	37	7	100681172	100681172	+	Missense_Mutation	SNP	A	A	G	rs28555173	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.A6475G	p.R2159G	.	.	163	7	50	0	A|0.823;G|0.177	95
MUC17	140453	hgsc.bcm.edu;bcgsc.ca	37	7	100684675	100684675	+	Silent	SNP	C	C	T	rs73402901	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC17	NM_001040105	exon3	c.C9978T	p.D3326D	.	.	181	8	49	0	C|0.988;T|0.012	95
MUC20	200958	bcgsc.ca	37	3	195451905	195451905	+	Missense_Mutation	SNP	G	G	A	rs201477247		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152673	exon2	c.G431A	p.C144Y	.	.	874	31	293	0	G|0.998;A|0.002	.
MUC20	200958	bcgsc.ca	37	3	195452805	195452805	+	Missense_Mutation	SNP	T	T	C	rs138659995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152673	exon3	c.T818C	p.L273P	.	.	381	17	147	0	T|0.856;C|0.144	.
MUC20	200958	bcgsc.ca	37	3	195452836	195452836	+	Silent	SNP	C	C	T	rs7651458		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152673	exon3	c.C849T	p.S283S	.	.	302	12	109	0	C|0.962;T|0.038	.
MUC20	200958	bcgsc.ca	37	3	195453014	195453014	+	Missense_Mutation	SNP	G	G	A	rs3828410	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152673	exon3	c.G1027A	p.G343R	.	.	264	10	104	0	G|0.800;A|0.200	.
MUC20	200958	bcgsc.ca	37	3	195453288	195453288	+	Missense_Mutation	SNP	A	A	C	rs3828405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152673	exon3	c.A1301C	p.D434A	.	.	99	13	36	0	A|0.928;C|0.072	.
MUC21	394263	bcgsc.ca	37	6	30954754	30954754	+	Missense_Mutation	SNP	G	G	A	rs9262365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC21	NM_001010909	exon2	c.G802A	p.G268S	.	.	205	19	82	2	G|0.901;A|0.099	92
MUC21	394263	bcgsc.ca	37	6	30954870	30954870	+	Silent	SNP	T	T	C	rs9262377		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC21	NM_001010909	exon2	c.T918C	p.S306S	.	.	185	15	73	1	.	92
MUC21	394263	bcgsc.ca	37	6	30955043	30955043	+	Missense_Mutation	SNP	G	G	A	rs9262385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC21	NM_001010909	exon2	c.G1091A	p.G364E	.	.	203	16	57	2	G|0.992;A|0.008	92
MUC21	394263	bcgsc.ca	37	6	30955156	30955156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC21	NM_001010909	exon2	c.G1204A	p.A402T	.	.	223	13	71	0	.	92
MUC2	4583	bcgsc.ca	37	11	1080576	1080576	+	Silent	SNP	G	G	A	rs41349846	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC2	NM_002457	exon9	c.G1218A	p.T406T	.	.	222	13	70	0	G|0.805;A|0.195	90
MUC4	4585	bcgsc.ca	37	3	195510050	195510050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C8401A	p.L2801I	.	.	409	15	188	0	.	90
MUC4	4585	bcgsc.ca	37	3	195510062	195510062	+	Missense_Mutation	SNP	G	G	C	rs200366897		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C8389G	p.H2797D	.	.	427	35	198	11	.	90
MUC4	4585	bcgsc.ca	37	3	195510108	195510108	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C8343T	p.H2781H	.	.	427	34	207	8	.	90
MUC4	4585	bcgsc.ca	37	3	195510758	195510758	+	Missense_Mutation	SNP	C	C	T	rs200554304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.G7693A	p.D2565N	.	.	479	18	194	2	C|0.994;T|0.006	90
MUC4	4585	bcgsc.ca	37	3	195511714	195511714	+	Missense_Mutation	SNP	A	A	G	rs71321838		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.T6737C	p.L2246P	.	.	542	34	216	4	A|0.500;G|0.500	90
MUC4	4585	bcgsc.ca	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C6540T	p.T2180T	.	.	363	36	144	3	G|0.998;A|0.002	90
MUC4	4585	bcgsc.ca	37	3	195513365	195513365	+	Missense_Mutation	SNP	G	G	A	rs62282501	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C5086T	p.R1696C	.	.	557	18	308	1	G|0.863;A|0.137	90
MUC4	4585	bcgsc.ca	37	3	195515550	195515550	+	Silent	SNP	G	G	C	rs59408218	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C2901G	p.T967T	.	.	347	28	152	0	G|0.897;C|0.103	90
MUC4	4585	bcgsc.ca	37	3	195515568	195515568	+	Silent	SNP	C	C	T	rs62282504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.G2883A	p.G961G	.	.	445	17	187	1	C|0.784;T|0.216	90
MUC4	4585	bcgsc.ca	37	3	195515610	195515610	+	Silent	SNP	A	A	G	rs113384737	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.T2841C	p.L947L	.	.	620	26	249	0	A|0.982;C|0.000;G|0.018	90
MUC4	4585	bcgsc.ca	37	3	195516305	195516305	+	Missense_Mutation	SNP	C	C	T	rs3749331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.G2146A	p.A716T	.	.	141	9	79	0	C|0.882;T|0.118	90
MUC4	4585	bcgsc.ca	37	3	195516982	195516982	+	Missense_Mutation	SNP	G	G	A	rs189561765		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C1469T	p.S490F	.	.	272	11	128	1	G|0.999;A|0.001	90
MUC4	4585	bcgsc.ca	37	3	195517124	195517124	+	Silent	SNP	G	G	A	rs1806440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUC4	NM_018406	exon2	c.C1327T	p.L443L	.	.	356	14	143	0	G|0.871;A|0.129	90
MUC5B	727897	bcgsc.ca	37	11	1264836	1264836	+	Silent	SNP	C	C	T	rs181901736		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_002458	exon31	c.C6726T	p.T2242T	.	.	526	16	262	0	C|0.993;T|0.007	.
MUC5B	727897	bcgsc.ca	37	11	1265992	1265992	+	Missense_Mutation	SNP	C	C	T	rs200675933	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_002458	exon31	c.C7882T	p.R2628C	.	.	287	17	186	0	.	.
MUC5B	727897	bcgsc.ca	37	11	1266599	1266599	+	Missense_Mutation	SNP	C	C	T	rs139960671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_002458	exon31	c.C8489T	p.P2830L	.	.	461	26	265	0	C|0.896;T|0.104	.
MUSK	4593	hgsc.bcm.edu;bcgsc.ca	37	9	113538072	113538072	+	Missense_Mutation	SNP	T	T	C	rs79843573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUSK	NM_005592	exon9	c.T1189C	p.Y397H	.	.	242	11	97	0	T|0.993;C|0.007	1379
MUT	4594	bcgsc.ca	37	6	49415448	49415448	+	Missense_Mutation	SNP	C	C	T	rs2229385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MUT	NM_000255	exon8	c.G1495A	p.A499T	.	.	479	15	186	0	C|0.898;T|0.102	91
MX1	4599	bcgsc.ca	37	21	42817930	42817930	+	Missense_Mutation	SNP	G	G	A	rs469390	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MX1	NM_001144925	exon15	c.G1135A	p.V379I	.	.	212	10	51	0	G|0.513;A|0.487	515
MXD3	83463	bcgsc.ca	37	5	176734150	176734150	+	Silent	SNP	T	T	G	rs4246814	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXD3	NM_001142935	exon6	c.A552C	p.G184G	.	.	314	14	105	0	T|0.986;G|0.014	226
MXRA5	25878	bcgsc.ca	37	X	3238167	3238167	+	Silent	SNP	T	T	G	rs1635245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.A5559C	p.P1853P	.	.	184	12	60	0	T|0.500;G|0.500	136
MXRA5	25878	bcgsc.ca	37	X	3239545	3239545	+	Missense_Mutation	SNP	C	C	T	rs1726199	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.G4181A	p.G1394D	.	.	124	9	45	0	0|0.013;T|0.558	136
MXRA5	25878	bcgsc.ca	37	X	3240343	3240343	+	Missense_Mutation	SNP	G	G	A	rs1635246	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.C3383T	p.A1128V	.	.	392	36	122	0	G|0.441;A|0.559	136
MXRA5	25878	bcgsc.ca	37	X	3241050	3241050	+	Silent	SNP	G	G	A	rs1635247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.C2676T	p.S892S	.	.	148	13	54	0	0|0.003;A|0.559	136
MXRA5	25878	bcgsc.ca	37	X	3241791	3241791	+	Silent	SNP	G	G	A	rs1635250	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.C1935T	p.D645D	.	.	147	10	93	0	0|0.003;A|0.487	136
MXRA5	25878	bcgsc.ca;mdanderson.org	37	X	3239979	3239979	+	Silent	SNP	G	G	A	rs3813167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.C3747T	p.S1249S	.	.	737	58	190	1	G|0.796;A|0.204	136
MXRA5	25878	hgsc.bcm.edu;bcgsc.ca	37	X	3227934	3227934	+	Silent	SNP	C	C	T	rs137855629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon7	c.G8310A	p.P2770P	.	.	227	21	91	0	C|0.960;T|0.040	136
MXRA5	25878	hgsc.bcm.edu;bcgsc.ca	37	X	3241436	3241436	+	Missense_Mutation	SNP	C	C	G	rs5983120	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.G2290C	p.V764L	.	.	373	23	71	0	C|0.958;G|0.042	136
MXRA5	25878	ucsc.edu;bcgsc.ca	37	X	3241256	3241256	+	Missense_Mutation	SNP	T	T	C	rs5983119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.A2470G	p.I824V	.	.	159	21	46	0	0|0.003;C|0.749	136
MXRA5	25878	ucsc.edu;bcgsc.ca	37	X	3241284	3241284	+	Silent	SNP	A	A	G	rs1635248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.T2442C	p.S814S	.	.	162	16	50	0	A|0.511;0|0.003	136
MXRA5	25878	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3228096	3228096	+	Silent	SNP	C	C	T	rs5983115	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon7	c.G8148A	p.E2716E	.	.	98	21	33	0	C|0.826;T|0.174	136
MXRA5	25878	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3241317	3241317	+	Silent	SNP	T	T	C	rs1635249	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MXRA5	NM_015419	exon5	c.A2409G	p.P803P	.	.	156	21	57	0	0|0.003;C|0.737	136
MYBBP1A	10514	bcgsc.ca	37	17	4448590	4448590	+	Silent	SNP	C	C	T	rs9911631	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYBBP1A	NM_014520	exon16	c.G2124A	p.T708T	.	.	88	5	30	0	C|0.931;T|0.069	92
MYBBP1A	10514	bcgsc.ca	37	17	4448940	4448940	+	Missense_Mutation	SNP	G	G	A	rs899440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYBBP1A	NM_014520	exon15	c.C2038T	p.H680Y	.	.	135	12	42	0	G|0.935;A|0.065	92
MYBL2	4605	bcgsc.ca	37	20	42331457	42331457	+	Missense_Mutation	SNP	A	A	G	rs2070235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYBL2	NM_002466	exon8	c.A1279G	p.S427G	.	.	161	8	44	0	A|0.837;G|0.163	415
MYBPC2	4606	bcgsc.ca	37	19	50938483	50938483	+	Missense_Mutation	SNP	G	G	A	rs57092106		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYBPC2	NM_004533	exon2	c.G85A	p.E29K	.	.	194	8	39	0	G|0.966;A|0.034	67
MYBPC2	4606	ucsc.edu;bcgsc.ca	37	19	50954153	50954153	+	Missense_Mutation	SNP	G	G	A	rs8104931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYBPC2	NM_004533	exon14	c.G1540A	p.G514S	.	.	130	12	49	0	G|0.950;A|0.050	67
MYBPC3	4607	hgsc.bcm.edu;bcgsc.ca	37	11	47365122	47365122	+	Missense_Mutation	SNP	G	G	A	rs11570076	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYBPC3	NM_000256	exon13	c.C1144T	p.R382W	.	.	119	9	29	0	G|0.987;A|0.013	92
MYCBP2	23077	bcgsc.ca	37	13	77745673	77745673	+	Silent	SNP	G	G	C	rs17067287	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYCBP2	NM_015057	exon38	c.C5748G	p.V1916V	.	.	211	20	98	4	G|0.970;C|0.030	236
MYEOV	26579	bcgsc.ca	37	11	69063136	69063136	+	Silent	SNP	C	C	T	rs7117236	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYEOV	NM_138768	exon3	c.C219T	p.A73A	.	.	85	6	39	0	C|0.620;T|0.380	90
MYEOV	26579	ucsc.edu;bcgsc.ca	37	11	69063393	69063393	+	Missense_Mutation	SNP	T	T	C	rs7103126	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYEOV	NM_138768	exon3	c.T476C	p.V159A	.	.	171	23	86	0	T|0.606;C|0.394	90
MYH11	4629	bcgsc.ca	37	16	15818653	15818653	+	Silent	SNP	G	G	A	rs12907	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH11	NM_001040114	exon31	c.C3988T	p.L1330L	.	.	81	5	28	0	G|0.899;A|0.101	666
MYH13	8735	bcgsc.ca	37	17	10216549	10216549	+	Silent	SNP	G	G	A	rs61745306		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH13	NM_003802	exon30	c.C4107T	p.N1369N	.	.	324	10	64	0	G|0.993;A|0.007	6
MYH1	4619	bcgsc.ca	37	17	10415792	10415792	+	Missense_Mutation	SNP	C	C	T	rs147072526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH1	NM_005963	exon12	c.G1080A	p.M360I	.	.	388	9	114	0	C|0.991;T|0.009	171
MYH14	79784	bcgsc.ca	37	19	50760716	50760716	+	Silent	SNP	C	C	G	rs378811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH14	NM_001145809	exon18	c.C2205G	p.R735R	.	.	92	6	29	0	C|0.436;G|0.564	23
MYH2	4620	bcgsc.ca	37	17	10450816	10450816	+	Silent	SNP	T	T	C	rs12600539	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH2	NM_017534	exon4	c.A324G	p.E108E	.	.	447	19	145	2	T|0.540;C|0.460	194
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10432501	10432501	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH2	NM_017534	exon26	c.3332delA	p.Q1111fs	.	.	247	90	65	0	.	194
MYH4	4622	bcgsc.ca	37	17	10351292	10351292	+	Missense_Mutation	SNP	C	C	T	rs146965064	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH4	NM_017533	exon34	c.G4808A	p.S1603N	.	.	637	23	264	0	C|0.988;T|0.012	102
MYH7B	57644	bcgsc.ca	37	20	33588874	33588874	+	Silent	SNP	G	G	A	rs76931580		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYH7B	NM_020884	exon41	c.G5514A	p.T1838T	.	.	113	6	70	0	G|0.996;A|0.004	136
MYLK	4638	bcgsc.ca	37	3	123419062	123419062	+	Missense_Mutation	SNP	T	T	C	rs75370906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYLK	NM_053025	exon18	c.A3253G	p.T1085A	.	.	401	12	139	0	T|0.943;C|0.057	365
MYO10	4651	bcgsc.ca	37	5	16754991	16754991	+	Silent	SNP	C	C	T	rs61736777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO10	NM_012334	exon19	c.G1875A	p.T625T	.	.	142	13	66	0	C|0.973;T|0.027	3
MYO16	23026	bcgsc.ca	37	13	109661359	109661359	+	Missense_Mutation	SNP	C	C	G	rs3825491	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO16	NM_001198950	exon22	c.C2557G	p.P853A	.	.	138	5	43	0	C|0.580;G|0.420	142
MYO16	23026	hgsc.bcm.edu;bcgsc.ca	37	13	109613970	109613970	+	Silent	SNP	C	C	T	rs112439513	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO16	NM_001198950	exon18	c.C2121T	p.S707S	.	.	145	8	77	0	C|0.993;T|0.007	142
MYO1C	4641	bcgsc.ca	37	17	1377943	1377943	+	Silent	SNP	A	A	G	rs2286873	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO1C	NM_001080779	exon17	c.T1758C	p.F586F	.	.	155	7	68	0	A|0.554;G|0.446	90
MYO1E	4643	bcgsc.ca	37	15	59510189	59510189	+	Silent	SNP	G	G	A	rs2230155	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO1E	NM_004998	exon10	c.C1008T	p.S336S	.	.	298	7	103	0	T|0.099;G|0.485;C|0.101;A|0.315	514
MYO1G	64005	bcgsc.ca	37	7	45015107	45015107	+	Silent	SNP	G	G	A	rs61738857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO1G	NM_033054	exon4	c.C540T	p.H180H	.	.	230	12	61	0	G|0.831;A|0.169	137
MYO1G	64005	bcgsc.ca	37	7	45016621	45016621	+	Missense_Mutation	SNP	C	C	T	rs61739531	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO1G	NM_033054	exon2	c.G145A	p.V49M	.	.	74	6	37	0	C|0.817;T|0.183	137
MYO3A	53904	bcgsc.ca	37	10	26385578	26385578	+	Silent	SNP	G	G	A	rs41279908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO3A	NM_017433	exon17	c.G1743A	p.E581E	.	.	397	19	166	1	G|0.909;A|0.091	1007
MYO5A	4644	bcgsc.ca	37	15	52643564	52643564	+	Missense_Mutation	SNP	G	G	A	rs1058219	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO5A	NM_000259	exon28	c.C3736T	p.R1246C	.	.	293	17	84	0	G|0.833;A|0.167	93
MYO5A	4644	bcgsc.ca	37	15	52684128	52684128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO5A	NM_000259	exon12	c.A1541G	p.K514R	.	.	141	5	51	0	.	93
MYO7A	4647	bcgsc.ca	37	11	76868372	76868372	+	Silent	SNP	T	T	C	rs762667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYO7A	NM_001127179	exon8	c.T783C	p.G261G	.	.	139	12	52	1	T|0.516;C|0.484	138
MYOM1	8736	bcgsc.ca	37	18	3215156	3215156	+	Silent	SNP	C	C	G	rs1662316	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYOM1	NM_003803	exon2	c.G66C	p.V22V	.	.	113	9	47	0	C|0.285;G|0.715	94
MYOM2	9172	bcgsc.ca	37	8	2048831	2048831	+	Missense_Mutation	SNP	A	A	G	rs968381	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYOM2	NM_003970	exon20	c.A2606G	p.N869S	.	.	88	7	43	0	A|0.561;G|0.439	95
MYOM3	127294	bcgsc.ca	37	1	24383873	24383873	+	Missense_Mutation	SNP	T	T	C	rs59805085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYOM3	NM_152372	exon37	c.A4295G	p.K1432R	.	.	176	9	70	0	T|0.975;C|0.025	93
MYOM3	127294	bcgsc.ca	37	1	24407903	24407903	+	Missense_Mutation	SNP	C	C	T	rs12082295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYOM3	NM_152372	exon19	c.G2324A	p.R775Q	.	.	246	17	77	0	C|0.984;T|0.016	93
MYOZ1	58529	bcgsc.ca	37	10	75391823	75391823	+	Silent	SNP	C	C	A	rs41280400	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYOZ1	NM_021245	exon6	c.G765T	p.L255L	.	.	257	12	127	0	C|0.964;A|0.036	92
MYPN	84665	bcgsc.ca	37	10	69934258	69934258	+	Missense_Mutation	SNP	C	C	G	rs3814182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYPN	NM_001256267	exon12	c.C2409G	p.S803R	.	.	232	10	73	0	C|0.500;G|0.500	95
MYPN	84665	bcgsc.ca	37	10	69959242	69959242	+	Missense_Mutation	SNP	C	C	A	rs7079481	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYPN	NM_001256267	exon18	c.C3403A	p.P1135T	.	.	200	8	96	0	C|0.623;A|0.377	95
MYPN	84665	ucsc.edu	37	10	69908157	69908157	+	Missense_Mutation	SNP	T	T	C	rs11596653	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYPN	NM_001256267	exon6	c.T1178C	p.V393A	.	.	229	26	108	2	T|0.874;C|0.126	95
MYRIP	25924	bcgsc.ca	37	3	40223771	40223771	+	Missense_Mutation	SNP	G	G	A	rs59923220	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYRIP	NM_015460	exon9	c.G934A	p.A312T	.	.	185	9	50	0	G|0.927;A|0.073	94
MYSM1	114803	bcgsc.ca	37	1	59142713	59142713	+	Silent	SNP	T	T	C	rs579110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYSM1	NM_001085487	exon9	c.A1275G	p.P425P	.	.	143	10	71	0	T|0.386;C|0.614	501
MYT1	4661	bcgsc.ca	37	20	62859241	62859241	+	Silent	SNP	C	C	T	rs78558275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYT1	NM_004535	exon18	c.C2592T	p.S864S	.	.	189	7	59	0	C|0.994;T|0.006	704
MYT1L	23040	bcgsc.ca	37	2	1946914	1946914	+	Silent	SNP	A	A	G	rs3748988	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYT1L	NM_015025	exon9	c.T345C	p.D115D	.	.	517	40	131	0	A|0.463;G|0.537	95
MYT1L	23040	bcgsc.ca	37	2	1946968	1946968	+	Silent	SNP	C	C	T	rs3748989	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MYT1L	NM_015025	exon9	c.G291A	p.E97E	.	.	612	30	164	0	C|0.830;T|0.170	95
MZF1	7593	bcgsc.ca	37	19	59073613	59073613	+	Silent	SNP	A	A	G	rs73562704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	MZF1	NM_198055	exon6	c.T2031C	p.G677G	.	.	117	10	61	0	A|0.854;G|0.146	91
N4BP2L2	10443	hgsc.bcm.edu;bcgsc.ca	37	13	33101574	33101574	+	Missense_Mutation	SNP	C	C	T	rs149866043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	N4BP2L2	NM_014887	exon3	c.G1355A	p.G452D	.	.	119	10	29	0	C|0.998;T|0.002	68
NAA25	80018	bcgsc.ca	37	12	112467380	112467380	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAA25	NM_024953	exon24	c.G2874A	p.E958E	.	.	345	13	121	0	.	155
NAA40	79829	bcgsc.ca	37	11	63713377	63713377	+	Silent	SNP	C	C	T	rs61740809	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAA40	NM_024771	exon2	c.C72T	p.A24A	.	.	235	10	91	0	C|0.957;T|0.043	90
NAALADL1	10004	bcgsc.ca	37	11	64824957	64824957	+	Silent	SNP	G	G	A	rs34388471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAALADL1	NM_005468	exon4	c.C489T	p.L163L	.	.	143	7	55	0	G|0.969;A|0.031	90
NACAP1	83955	bcgsc.ca	37	8	102381673	102381673	+	RNA	SNP	T	T	C	rs10095458	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	298	9	59	0	T|0.871;C|0.129	.
NADKD1	133686	bcgsc.ca	37	5	36227609	36227609	+	Missense_Mutation	SNP	T	T	C	rs115795863	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NADKD1	NM_001085411	exon2	c.A359G	p.K120R	.	.	128	7	63	0	T|0.984;C|0.016	92
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164085437	164085437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAF1	NM_138386	exon2	c.G472A	p.D158N	.	.	464	153	196	0	.	70
NAGLU	4669	bcgsc.ca	37	17	40689453	40689453	+	Missense_Mutation	SNP	T	T	A	rs61737294	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAGLU	NM_000263	exon2	c.T421A	p.S141T	.	.	113	7	42	1	T|0.978;A|0.022	90
NANOGNB	360030	hgsc.bcm.edu;bcgsc.ca	37	12	7922649	7922649	+	Missense_Mutation	SNP	A	A	G	rs114136506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145465	exon2	c.A173G	p.N58S	.	.	209	11	85	0	A|0.996;G|0.004	.
NANS	54187	bcgsc.ca	37	9	100823084	100823084	+	Silent	SNP	T	T	C	rs13049	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NANS	NM_018946	exon2	c.T153C	p.A51A	.	.	187	6	117	0	T|0.396;C|0.604	91
NAP1L2	4674	hgsc.bcm.edu;bcgsc.ca	37	X	72434302	72434302	+	Silent	SNP	C	C	T	rs34495238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAP1L2	NM_021963	exon1	c.G27A	p.E9E	.	.	121	11	43	0	C|0.970;T|0.030	130
NARS2	79731	bcgsc.ca	37	11	78279744	78279744	+	Silent	SNP	T	T	C	rs60510975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NARS2	NM_024678	exon3	c.A306G	p.P102P	.	.	305	11	98	0	T|0.960;C|0.040	92
NAT6	24142	bcgsc.ca	37	3	50334231	50334231	+	Missense_Mutation	SNP	T	T	A	rs2269432	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAT6	NM_012191	exon2	c.A730T	p.R244W	.	.	260	8	67	0	T|0.759;A|0.241	232
NAT6	24142	bcgsc.ca	37	3	50334633	50334633	+	Missense_Mutation	SNP	T	T	C	rs181805747		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAT6	NM_012191	exon2	c.A328G	p.T110A	.	.	152	7	37	0	T|0.996;C|0.004	232
NAT6	24142	hgsc.bcm.edu;bcgsc.ca	37	3	50334099	50334099	+	Silent	SNP	G	G	A	rs192428304		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NAT6	NM_012191	exon2	c.C862T	p.L288L	.	.	221	14	97	0	G|0.996;A|0.004	232
NBAS	51594	bcgsc.ca	37	2	15378808	15378808	+	Silent	SNP	C	C	G	rs34080125	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NBAS	NM_015909	exon45	c.G5727C	p.L1909L	.	.	292	12	120	0	C|0.698;G|0.302	94
NBEA	26960	bcgsc.ca	37	13	35926406	35926406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NBEA	NM_015678	exon38	c.A6125G	p.K2042R	.	.	138	5	47	0	.	144
NBPF6	653149	bcgsc.ca	37	1	109010261	109010261	+	Missense_Mutation	SNP	G	G	A	rs139572545		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001143987	exon15	c.G1936A	p.A646T	.	.	1316	74	461	0	G|0.953;A|0.047	.
NBPF7	343505	hgsc.bcm.edu;bcgsc.ca	37	1	120381975	120381975	+	Missense_Mutation	SNP	G	G	T	rs202036468		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NBPF7	NM_001047980	exon5	c.C670A	p.L224M	.	.	527	27	208	0	G|0.999;T|0.001	24
NCAPD2	9918	bcgsc.ca	37	12	6640500	6640500	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCAPD2	NM_014865	exon32	c.A4128G	p.S1376S	.	.	86	6	28	0	.	660
NCBP1	4686	bcgsc.ca	37	9	100420976	100420976	+	Silent	SNP	G	G	A	rs2297155	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCBP1	NM_002486	exon15	c.G1428A	p.L476L	.	.	308	11	123	0	G|0.647;T|0.033	90
NCEH1	57552	bcgsc.ca	37	3	172428782	172428782	+	Missense_Mutation	SNP	T	T	C	rs2276805	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCEH1	NM_020792	exon1	c.A89G	p.Q30R	.	.	215	9	91	0	T|0.457;C|0.543	90
NCF1B	654816	broad.mit.edu	37	7	72645945	72645945	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	456	44	129	0	.	.
NCF1C	654817	bcgsc.ca	37	7	74578796	74578796	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	803	23	266	0	.	.
NCF2	4688	bcgsc.ca	37	1	183529333	183529333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCF2	NM_001127651	exon15	c.C1366A	p.L456I	.	.	897	28	229	1	.	93
NCKAP5L	57701	ucsc.edu;bcgsc.ca	37	12	50189602	50189602	+	Missense_Mutation	SNP	A	A	G	rs3813526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCKAP5L	NM_001037806	exon8	c.T2041C	p.S681P	.	.	78	9	29	0	A|0.740;G|0.260	68
NCL	4691	bcgsc.ca	37	2	232325465	232325465	+	Silent	SNP	A	A	G	rs116104217	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCL	NM_005381	exon4	c.T726C	p.D242D	.	.	590	17	216	0	A|0.998;C|0.000;G|0.002	230
NCL	4691	bcgsc.ca	37	2	232326417	232326417	+	Silent	SNP	C	C	T	rs1131171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCL	NM_005381	exon3	c.G447A	p.E149E	.	.	628	19	186	1	C|0.662;T|0.338	230
NCOA3	8202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	46254168	46254168	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCOA3	NM_181659	exon5	c.A300G	p.V100V	.	.	117	39	45	1	.	229
NCOA5	57727	bcgsc.ca	37	20	44691350	44691350	+	Silent	SNP	T	T	G	rs1537028	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCOA5	NM_020967	exon8	c.A1329C	p.T443T	.	.	589	47	153	0	A|0.003;C|0.002	226
NCOA6	23054	bcgsc.ca	37	20	33337751	33337751	+	Silent	SNP	T	T	C	rs3787220	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCOA6	NM_014071	exon9	c.A2247G	p.P749P	.	.	229	17	59	0	T|0.160;C|0.840	292
NCOA6	23054	hgsc.bcm.edu;bcgsc.ca	37	20	33338099	33338099	+	Silent	SNP	G	G	A	rs61736335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCOA6	NM_014071	exon9	c.C1899T	p.G633G	.	.	175	13	37	0	G|0.996;A|0.004	292
NCOR1	9611	bcgsc.ca	37	17	15968887	15968887	+	Silent	SNP	T	T	C	rs7210057	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NCOR1	NM_001190440	exon32	c.A4911G	p.Q1637Q	.	.	499	21	176	1	T|0.979;C|0.021	229
ND1	10625	bcgsc.ca	37	MT	3385	3385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361390	exon1	c.A79G	p.I27V	.	.	417	24	499	1	.	.
ND1	10625	bcgsc.ca	37	MT	3450	3450	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361390	exon1	c.C144T	p.P48P	.	.	356	18	466	6	.	.
ND2	0	bcgsc.ca	37	MT	5255	5255	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361453	exon1	c.C786T	p.P262P	.	.	383	27	547	1	.	.
ND3	0	bcgsc.ca	37	MT	10086	10086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361227	exon1	c.A28G	p.N10D	.	.	292	21	442	0	.	.
ND3	0	bcgsc.ca	37	MT	10373	10373	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361227	exon1	c.G315A	p.E105E	.	.	428	26	483	0	.	.
ND3	0	bcgsc.ca	37	MT	10398	10398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361227	exon1	c.A340G	p.T114A	.	.	414	27	494	1	.	.
ND4	0	bcgsc.ca	37	MT	10873	10873	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361381	exon1	c.T114C	p.P38P	.	.	496	29	585	3	.	.
ND4	0	bcgsc.ca	37	MT	11002	11002	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361381	exon1	c.A243G	p.Q81Q	.	.	441	24	565	0	.	.
ND4	0	bcgsc.ca	37	MT	11719	11719	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361381	exon1	c.G960A	p.G320G	.	.	447	31	527	0	.	.
ND5	0	bcgsc.ca	37	MT	12705	12705	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361567	exon1	c.C369T	p.I123I	.	.	454	30	610	0	.	.
ND5	0	bcgsc.ca	37	MT	13105	13105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361567	exon1	c.A769G	p.I257V	.	.	422	26	506	0	.	.
ND5	0	bcgsc.ca	37	MT	13542	13542	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361567	exon1	c.A1206G	p.S402S	.	.	437	30	521	0	.	.
ND5	0	bcgsc.ca	37	MT	13914	13914	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	ENST00000361567	exon1	c.C1578A	p.L526L	.	.	466	28	532	2	.	.
NDFIP1	80762	bcgsc.ca	37	5	141511889	141511889	+	Silent	SNP	C	C	A	rs73287051	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDFIP1	NM_030571	exon3	c.C264A	p.I88I	.	.	455	16	190	0	C|0.998;A|0.002	90
NDNF	79625	bcgsc.ca	37	4	121957559	121957559	+	Silent	SNP	G	G	A	rs34766411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDNF	NM_024574	exon4	c.C1567T	p.L523L	.	.	713	25	322	0	G|0.789;A|0.211	90
NDNF	79625	bcgsc.ca	37	4	121958691	121958691	+	Silent	SNP	T	T	C	rs3733559	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDNF	NM_024574	exon4	c.A435G	p.L145L	.	.	209	15	104	0	T|0.796;C|0.204	90
NDST4	64579	bcgsc.ca	37	4	115997485	115997485	+	Silent	SNP	A	A	C	rs34134859	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDST4	NM_022569	exon2	c.T708G	p.T236T	.	.	162	9	71	0	A|0.956;C|0.044	94
NDUFA9	4704	bcgsc.ca	37	12	4766988	4766988	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDUFA9	NM_005002	exon4	c.A393G	p.G131G	.	.	175	6	59	0	.	227
NDUFAF1	51103	bcgsc.ca	37	15	41689232	41689232	+	Missense_Mutation	SNP	C	C	T	rs1899	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDUFAF1	NM_016013	exon2	c.G26A	p.R9H	.	.	213	7	64	0	C|0.825;T|0.175	91
NDUFB11	54539	hgsc.bcm.edu	37	X	47003944	47003945	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NDUFB11	NM_019056	exon1	c.135_136insG	p.G45fs	.	.	138	12	30	0	.	130
NEB	4703	bcgsc.ca	37	2	152382759	152382759	+	Silent	SNP	T	T	C	rs61730765	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEB	NM_001271208	exon150	c.A22068G	p.K7356K	.	.	198	13	88	1	T|0.975;C|0.025	145
NEB	4703	bcgsc.ca	37	2	152389991	152389991	+	Silent	SNP	A	A	G	rs114218081	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEB	NM_001271208	exon144	c.T21487C	p.L7163L	.	.	155	8	50	0	A|0.979;G|0.021	145
NEB	4703	bcgsc.ca	37	2	152477476	152477476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEB	NM_001271208	exon72	c.T10517C	p.I3506T	.	.	205	6	62	0	.	145
NEB	4703	hgsc.bcm.edu;bcgsc.ca	37	2	152496908	152496908	+	Silent	SNP	G	G	A	rs61730773		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEB	NM_004543	exon61	c.C8646T	p.D2882D	.	.	350	17	108	0	G|0.987;A|0.013	145
NEBL	10529	bcgsc.ca	37	10	21112137	21112137	+	Missense_Mutation	SNP	A	A	T	rs4748728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEBL	NM_006393	exon19	c.T1962A	p.N654K	.	.	125	6	35	0	A|0.909;T|0.091	92
NECAB2	54550	ucsc.edu	37	16	84012104	84012104	+	Silent	SNP	T	T	C	rs925331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NECAB2	NM_019065	exon3	c.T282C	p.L94L	.	.	93	9	24	0	T|0.692;C|0.308	70
NEDD4	4734	bcgsc.ca	37	15	56285721	56285721	+	Silent	SNP	G	G	A	rs77914199	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEDD4	NM_006154	exon1	c.C33T	p.L11L	.	.	109	8	46	0	G|0.929;A|0.071	723
NEGR1	257194	bcgsc.ca	37	1	72058543	72058543	+	Silent	SNP	A	A	T	rs3795696	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEGR1	NM_173808	exon6	c.T897A	p.A299A	.	.	189	16	103	0	A|0.959;T|0.041	92
NEIL2	252969	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11640784	11640784	+	Silent	SNP	A	A	G	rs8191642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEIL2	NM_001135746	exon4	c.A564G	p.P188P	.	.	445	55	208	0	A|0.751;G|0.249	659
NEIL3	55247	bcgsc.ca	37	4	178231219	178231219	+	Missense_Mutation	SNP	C	C	T	rs34007209	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEIL3	NM_018248	exon1	c.C112T	p.R38C	.	.	108	7	60	0	C|0.884;T|0.116	660
NEK10	152110	bcgsc.ca	37	3	27326097	27326097	+	Silent	SNP	G	G	T	rs11129280	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK10	NM_199347	exon23	c.C2010A	p.T670T	.	.	139	8	50	0	G|0.774;T|0.226	695
NEK10	152110	bcgsc.ca	37	3	27326348	27326348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK10	NM_199347	exon22	c.T1894C	p.W632R	.	.	166	5	66	0	.	695
NEK10	152110	bcgsc.ca	37	3	27332820	27332820	+	Missense_Mutation	SNP	A	A	G	rs10510592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK10	NM_199347	exon19	c.T1538C	p.L513S	.	.	452	12	198	0	A|0.824;G|0.176	695
NEK1	4750	bcgsc.ca	37	4	170345893	170345893	+	Silent	SNP	C	C	T	rs7655924	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK1	NM_001199397	exon31	c.G3033A	p.P1011P	.	.	164	8	70	0	C|0.906;T|0.094	361
NEK2	4751	bcgsc.ca	37	1	211840498	211840498	+	Missense_Mutation	SNP	T	T	C	rs2230489	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK2	NM_002497	exon7	c.A1061G	p.N354S	.	.	402	15	128	2	T|0.510;G|0.066	765
NEK9	91754	bcgsc.ca	37	14	75574087	75574087	+	Missense_Mutation	SNP	C	C	T	rs10146482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK9	NM_033116	exon11	c.G1286A	p.R429H	.	.	299	10	72	0	C|0.515;N|0.000	359
NEK9	91754	bcgsc.ca	37	14	75590822	75590822	+	Silent	SNP	G	G	A	rs8017642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NEK9	NM_033116	exon2	c.C324T	p.H108H	.	.	166	6	63	0	G|0.555;A|0.445	359
NELL1	4745	bcgsc.ca	37	11	20949952	20949952	+	Silent	SNP	C	C	T	rs8176795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NELL1	NM_006157	exon9	c.C924T	p.S308S	.	.	249	11	95	0	C|0.948;T|0.052	155
NELL1	4745	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20805335	20805335	+	Silent	SNP	C	C	T	rs2280363	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NELL1	NM_006157	exon3	c.C294T	p.S98S	.	.	139	24	49	0	C|0.716;T|0.284	155
NF2	4771	bcgsc.ca	37	22	30064435	30064435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NF2	NM_000268	exon10	c.G999C	p.Q333H	.	.	164	6	88	0	.	4696
NFASC	23114	ucsc.edu;bcgsc.ca	37	1	204945934	204945934	+	Silent	SNP	A	A	G	rs6657372	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NFASC	NM_001005389	exon16	c.A1842G	p.P614P	.	.	57	6	31	0	A|0.900;G|0.100	139
NFAT5	10725	bcgsc.ca	37	16	69727079	69727079	+	Silent	SNP	T	T	C	rs61730073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NFAT5	NM_138713	exon13	c.T3351C	p.I1117I	.	.	166	9	122	0	T|0.955;C|0.045	90
NFE2L3	9603	bcgsc.ca	37	7	26224668	26224668	+	Silent	SNP	C	C	T	rs61730063	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NFE2L3	NM_004289	exon4	c.C1350T	p.C450C	.	.	241	9	98	0	C|0.790;T|0.210	94
NFKBID	84807	ucsc.edu;bcgsc.ca	37	19	36387881	36387881	+	Missense_Mutation	SNP	A	A	G	rs8113704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NFKBID	NM_139239	exon5	c.T86C	p.V29A	.	.	95	10	35	0	A|0.840;G|0.160	90
NFKBIZ	64332	hgsc.bcm.edu;bcgsc.ca	37	3	101572510	101572510	+	Silent	SNP	C	C	T	rs36003810	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NFKBIZ	NM_031419	exon5	c.C1140T	p.S380S	.	.	157	9	57	0	C|0.956;T|0.044	92
NFU1	27247	bcgsc.ca	37	2	69659126	69659126	+	Missense_Mutation	SNP	A	A	T	rs4453725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NFU1	NM_001002755	exon2	c.T74A	p.M25K	.	.	105	6	35	0	A|0.540;T|0.460	90
NGFR	4804	bcgsc.ca	37	17	47589314	47589314	+	Silent	SNP	C	C	T	rs143102445		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NGFR	NM_002507	exon5	c.C882T	p.P294P	.	.	134	7	51	0	C|1.000;T|0.000	947
NHLRC2	374354	bcgsc.ca	37	10	115664622	115664622	+	Missense_Mutation	SNP	T	T	C	rs144606661	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NHLRC2	NM_198514	exon10	c.T1751C	p.L584P	.	.	130	7	55	0	T|0.997;C|0.003	91
NHLRC2	374354	hgsc.bcm.edu;bcgsc.ca	37	10	115664694	115664694	+	Missense_Mutation	SNP	C	C	T	rs150975627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NHLRC2	NM_198514	exon10	c.C1823T	p.A608V	.	.	102	7	54	0	C|0.997;T|0.003	91
NHS	4810	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17746244	17746244	+	Missense_Mutation	SNP	T	T	C	rs3747295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NHS	NM_198270	exon6	c.T3955C	p.F1319L	.	.	160	21	47	0	0|0.003;C|0.382	197
NHSL1	57224	bcgsc.ca	37	6	138753849	138753849	+	Missense_Mutation	SNP	C	C	T	rs76205421	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NHSL1	NM_020464	exon5	c.G1645A	p.G549R	.	.	184	9	43	1	C|0.992;T|0.008	68
NHSL2	340527	bcgsc.ca	37	X	71359954	71359954	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NHSL2	NM_001013627	exon6	c.G2556A	p.E852E	.	.	72	4	30	0	.	108
NHSL2	340527	bcgsc.ca	37	X	71360100	71360100	+	Missense_Mutation	SNP	C	C	T	rs7061150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NHSL2	NM_001013627	exon6	c.C2702T	p.T901I	.	.	160	13	48	0	C|0.880;0|0.012	108
NID1	4811	bcgsc.ca	37	1	236208773	236208773	+	Missense_Mutation	SNP	C	C	T	rs10733133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NID1	NM_002508	exon3	c.G736A	p.V246I	.	.	133	6	75	0	C|0.469;N|0.000	154
NIN	51199	bcgsc.ca	37	14	51230590	51230590	+	Silent	SNP	C	C	T	rs61755036	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NIN	NM_020921	exon15	c.G1728A	p.P576P	.	.	198	9	78	0	C|0.984;T|0.016	229
NIN	51199	bcgsc.ca	37	14	51273486	51273486	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NIN	NM_020921	exon4	c.T234C	p.T78T	.	.	113	5	46	0	.	229
NIN	51199	bcgsc.ca;mdanderson.org	37	14	51219320	51219320	+	Missense_Mutation	SNP	T	T	G	rs77959782	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NIN	NM_020921	exon21	c.A4866C	p.E1622D	.	.	971	86	356	0	T|0.986;G|0.014	229
NINL	22981	bcgsc.ca	37	20	25456698	25456698	+	Missense_Mutation	SNP	C	C	T	rs35666277	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NINL	NM_025176	exon17	c.G3229A	p.D1077N	.	.	335	19	100	0	C|0.953;T|0.047	94
NKX2-5	1482	bcgsc.ca	37	5	172662014	172662014	+	Missense_Mutation	SNP	G	G	A	rs28936670	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NKX2-5	NM_004387	exon1	c.C73T	p.R25C	.	.	237	12	78	2	G|0.993;A|0.007	90
NKX2-5	1482	bcgsc.ca	37	5	172662024	172662024	+	Silent	SNP	T	T	C	rs2277923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NKX2-5	NM_004387	exon1	c.A63G	p.E21E	.	.	274	28	80	0	T|0.555;C|0.445	90
NLGN1	22871	bcgsc.ca	37	3	173997153	173997153	+	Silent	SNP	G	G	A	rs7646919	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLGN1	NM_014932	exon6	c.G1362A	p.K454K	.	.	175	13	121	0	G|0.797;A|0.203	231
NLGN2	57555	bcgsc.ca	37	17	7318935	7318935	+	Silent	SNP	C	C	T	rs12947017	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLGN2	NM_020795	exon6	c.C1143T	p.G381G	.	.	180	15	73	0	C|0.720;T|0.280	90
NLRC5	84166	hgsc.bcm.edu;bcgsc.ca	37	16	57075912	57075912	+	Silent	SNP	G	G	A	rs73546859	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRC5	NM_032206	exon18	c.G3048A	p.L1016L	.	.	213	13	34	0	G|0.977;A|0.023	159
NLRP11	204801	bcgsc.ca	37	19	56320483	56320483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP11	NM_145007	exon5	c.T1493C	p.L498P	.	.	248	7	79	0	.	169
NLRP11	204801	bcgsc.ca	37	19	56321577	56321577	+	Silent	SNP	T	T	C	rs61751897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP11	NM_145007	exon5	c.A399G	p.Q133Q	.	.	245	10	111	0	T|0.981;C|0.019	169
NLRP1	22861	bcgsc.ca	37	17	5461671	5461671	+	Missense_Mutation	SNP	G	G	C	rs52795654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP1	NM_033007	exon4	c.C2345G	p.T782S	.	.	314	9	70	0	G|0.931;C|0.069	274
NLRP1	22861	bcgsc.ca	37	17	5461847	5461847	+	Silent	SNP	G	G	A	rs61753136	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP1	NM_033007	exon4	c.C2169T	p.Y723Y	.	.	117	6	54	0	G|0.931;A|0.069	274
NLRP12	91662	bcgsc.ca	37	19	54308554	54308554	+	Silent	SNP	C	C	T	rs4806773	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP12	NM_144687	exon5	c.G2394A	p.L798L	.	.	140	5	37	0	C|0.168;T|0.832	211
NLRP13	126204	bcgsc.ca	37	19	56423579	56423579	+	Missense_Mutation	SNP	G	G	A	rs139718898	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP13	NM_176810	exon5	c.C1604T	p.T535I	.	.	174	8	44	0	G|0.994;A|0.006	211
NLRP2	55655	bcgsc.ca	37	19	55485899	55485899	+	Silent	SNP	G	G	A	rs2217659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP2	NM_001174082	exon3	c.G312A	p.K104K	.	.	118	5	69	0	G|0.829;A|0.171	120
NLRP2	55655	bcgsc.ca	37	19	55512232	55512232	+	Missense_Mutation	SNP	C	C	A	rs1043673	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP2	NM_017852	exon13	c.C3155A	p.A1052E	.	.	116	8	49	0	C|0.621;A|0.379	120
NLRP4	147945	bcgsc.ca	37	19	56369668	56369668	+	Silent	SNP	C	C	T	rs112565033	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP4	NM_134444	exon3	c.C909T	p.N303N	.	.	208	6	80	0	C|0.994;T|0.006	216
NLRP5	126206	bcgsc.ca	37	19	56515393	56515393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP5	NM_153447	exon2	c.C374T	p.T125M	.	.	133	5	29	0	.	162
NLRP5	126206	bcgsc.ca	37	19	56549510	56549510	+	Missense_Mutation	SNP	T	T	C	rs16986899	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP5	NM_153447	exon10	c.T2735C	p.M912T	.	.	187	8	45	0	T|0.731;C|0.269	162
NLRP5	126206	bcgsc.ca	37	19	56552321	56552321	+	Silent	SNP	C	C	T	rs34310724		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP5	NM_153447	exon11	c.C2820T	p.C940C	.	.	110	6	51	0	C|0.996;T|0.004	162
NLRP5	126206	bcgsc.ca	37	19	56569629	56569629	+	Missense_Mutation	SNP	C	C	G	rs12462795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP5	NM_153447	exon14	c.C3323G	p.S1108C	.	.	377	15	112	0	C|0.827;G|0.173	162
NLRP5	126206	hgsc.bcm.edu;bcgsc.ca	37	19	56539199	56539199	+	Missense_Mutation	SNP	A	A	G	rs201311338		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP5	NM_153447	exon7	c.A1600G	p.M534V	.	.	261	12	67	0	.	162
NLRP7	199713	hgsc.bcm.edu;bcgsc.ca	37	19	55441956	55441956	+	Silent	SNP	G	G	A	rs61750468	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP7	NM_001127255	exon9	c.C2721T	p.N907N	.	.	232	10	63	0	G|0.988;A|0.012	291
NLRP8	126205	bcgsc.ca	37	19	56459458	56459458	+	Missense_Mutation	SNP	C	C	T	rs61195059	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP8	NM_176811	exon1	c.C190T	p.L64F	.	.	127	6	42	0	C|0.925;T|0.075	361
NLRP8	126205	ucsc.edu;bcgsc.ca	37	19	56477710	56477710	+	Missense_Mutation	SNP	T	T	C	rs306496	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRP8	NM_176811	exon5	c.T2345C	p.V782A	.	.	172	19	84	0	T|0.382;C|0.618	361
NLRX1	79671	bcgsc.ca	37	11	119042123	119042123	+	Missense_Mutation	SNP	G	G	A	rs116368960	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRX1	NM_024618	exon2	c.G11A	p.G4D	.	.	119	5	29	0	G|0.991;A|0.009	92
NLRX1	79671	bcgsc.ca	37	11	119050524	119050524	+	Silent	SNP	C	C	T	rs75430785	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRX1	NM_024618	exon7	c.C1794T	p.G598G	.	.	157	10	71	0	C|0.988;T|0.012	92
NLRX1	79671	bcgsc.ca	37	11	119050860	119050860	+	Silent	SNP	A	A	C	rs74950586	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRX1	NM_024618	exon7	c.A2130C	p.P710P	.	.	164	8	67	0	A|0.989;C|0.011	92
NLRX1	79671	bcgsc.ca	37	11	119050906	119050906	+	Missense_Mutation	SNP	G	G	A	rs45450295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRX1	NM_024618	exon7	c.G2176A	p.A726T	.	.	237	13	88	0	G|0.988;A|0.012	92
NLRX1	79671	ucsc.edu;bcgsc.ca	37	11	119043656	119043656	+	Missense_Mutation	SNP	C	C	T	rs643423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NLRX1	NM_024618	exon4	c.C187T	p.P63S	.	.	67	14	17	0	C|0.405;T|0.595	92
NMBR	4829	bcgsc.ca	37	6	142396878	142396878	+	Silent	SNP	C	C	A	rs113235463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NMBR	NM_002511	exon3	c.G1080T	p.V360V	.	.	199	7	64	0	C|0.967;A|0.033	946
NME8	51314	bcgsc.ca	37	7	37890267	37890267	+	Missense_Mutation	SNP	G	G	A	rs2722372	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016616	exon5	c.G128A	p.R43K	.	.	189	15	69	0	G|0.715;A|0.285	.
NME8	51314	bcgsc.ca	37	7	37890316	37890316	+	Silent	SNP	C	C	T	rs2598044	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016616	exon5	c.C177T	p.D59D	.	.	203	15	75	0	C|0.715;T|0.285	.
NME8	51314	bcgsc.ca	37	7	37896896	37896896	+	Silent	SNP	G	G	A	rs3213976	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016616	exon6	c.G219A	p.V73V	.	.	217	10	99	0	G|0.912;A|0.088	.
NMI	9111	bcgsc.ca	37	2	152132130	152132130	+	Silent	SNP	A	A	G	rs289834	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NMI	NM_004688	exon6	c.T502C	p.L168L	.	.	240	11	80	0	A|0.833;G|0.167	90
NMI	9111	bcgsc.ca	37	2	152139416	152139416	+	Missense_Mutation	SNP	G	G	A	rs1048135	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NMI	NM_004688	exon2	c.C47T	p.S16L	.	.	507	23	205	1	G|0.671;N|0.000	90
NMRK1	54981	bcgsc.ca	37	9	77684690	77684690	+	Silent	SNP	A	A	C	rs3752955	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_017881	exon6	c.T357G	p.T119T	.	.	131	7	56	0	A|0.395;C|0.605	.
NMS	129521	bcgsc.ca	37	2	101086966	101086966	+	Missense_Mutation	SNP	C	C	T	rs13411940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NMS	NM_001011717	exon1	c.C16T	p.P6S	.	.	136	10	31	0	C|0.746;T|0.254	91
NMS	129521	bcgsc.ca	37	2	101096960	101096960	+	Silent	SNP	C	C	T	rs1519654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	NMS,NS,carcinoma,+2	NMS	NM_001011717	exon7	c.C339T	p.G113G	.	.	186	11	64	0	C|0.321;T|0.679	91
NMUR2	56923	bcgsc.ca	37	5	151775141	151775141	+	Silent	SNP	G	G	A	rs10055345	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NMUR2	NM_020167	exon3	c.C816T	p.V272V	.	.	143	6	60	0	G|0.977;A|0.023	526
NNT	23530	bcgsc.ca	37	5	43609343	43609343	+	Silent	SNP	C	C	T	rs10057103	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NNT	NM_182977	exon2	c.C46T	p.L16L	.	.	265	18	142	2	C|0.373;T|0.627	92
NOBOX	135935	bcgsc.ca	37	7	144098992	144098992	+	Silent	SNP	G	G	A	rs727714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOBOX	NM_001080413	exon3	c.C262T	p.L88L	.	.	217	13	52	0	G|0.339;A|0.661	69
NOBOX	135935	bcgsc.ca	37	7	144107255	144107255	+	Silent	SNP	A	A	G	rs138463368		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOBOX	NM_001080413	exon1	c.T66C	p.D22D	.	.	345	13	113	0	A|0.992;G|0.008	69
NOC3L	64318	bcgsc.ca	37	10	96098493	96098493	+	Missense_Mutation	SNP	T	T	A	rs12259382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOC3L	NM_022451	exon18	c.A1963T	p.T655S	.	.	173	8	67	0	T|0.971;A|0.029	91
NOD2	64127	bcgsc.ca	37	16	50745275	50745275	+	Silent	SNP	C	C	T	rs5743274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOD2	NM_022162	exon4	c.C1453T	p.L485L	.	.	85	5	34	0	C|0.989;T|0.011	231
NOD2	64127	bcgsc.ca	37	16	50746191	50746191	+	Missense_Mutation	SNP	G	G	A	rs5743279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOD2	NM_022162	exon4	c.G2369A	p.R790Q	.	.	133	11	48	0	G|0.989;A|0.011	231
NOL10	79954	bcgsc.ca	37	2	10712278	10712278	+	Silent	SNP	C	C	T	rs3732114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024894	exon21	c.G1986A	p.L662L	.	.	474	23	151	0	C|0.730;T|0.270	.
NOL10	79954	bcgsc.ca	37	2	10784491	10784491	+	Silent	SNP	A	A	G	rs3732111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024894	exon13	c.T981C	p.L327L	.	.	316	13	100	0	A|0.770;G|0.230	.
NOL8	55035	bcgsc.ca	37	9	95068046	95068046	+	Silent	SNP	C	C	T	rs1133908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOL8	NM_017948	exon12	c.G2892A	p.K964K	.	.	484	36	216	1	T|0.143;G|0.406	23
NOM1	64434	bcgsc.ca	37	7	156743264	156743264	+	Missense_Mutation	SNP	C	C	A	rs61747373	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOM1	NM_138400	exon1	c.C833A	p.A278E	.	.	112	8	55	0	C|0.807;A|0.193	90
NOM1	64434	bcgsc.ca	37	7	156745224	156745224	+	Silent	SNP	G	G	A	rs59371845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOM1	NM_138400	exon2	c.G1044A	p.E348E	.	.	369	13	160	0	G|0.950;A|0.050	90
NOMO1	23420	bcgsc.ca	37	16	14972670	14972670	+	Silent	SNP	C	C	A	rs393246	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOMO1	NM_014287	exon23	c.C2736A	p.G912G	.	.	2282	63	772	1	.	45
NOP14	8602	hgsc.bcm.edu;bcgsc.ca	37	4	2956258	2956258	+	Missense_Mutation	SNP	C	C	T	rs142398228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOP14	NM_003703	exon4	c.G505A	p.G169S	.	.	150	8	46	0	C|0.999;T|0.001	91
NOP14-AS1	317648	ucsc.edu	37	4	2940462	2940462	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	90	1	42	0	.	.
NOP2	4839	bcgsc.ca	37	12	6666496	6666496	+	Missense_Mutation	SNP	C	C	T	rs61731913		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOP2	NM_001258309	exon17	c.G2201A	p.R734Q	.	.	438	15	121	0	C|0.987;T|0.013	92
NOP2	4839	bcgsc.ca	37	12	6672928	6672928	+	Missense_Mutation	SNP	C	C	G	rs115447939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOP2	NM_001258309	exon8	c.G639C	p.W213C	.	.	154	8	47	0	C|0.989;G|0.011	92
NOP56	10528	hgsc.bcm.edu;bcgsc.ca	37	20	2638880	2638880	+	Silent	SNP	G	G	A	rs61752514		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOP56	NM_006392	exon12	c.G1725A	p.A575A	.	.	92	6	59	0	A|0.005;G|0.995	92
NOP58	51602	bcgsc.ca	37	2	203139844	203139844	+	Silent	SNP	T	T	C	rs80282360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOP58	NM_015934	exon2	c.T54C	p.N18N	.	.	549	17	231	0	T|0.904;C|0.096	90
NOP58	51602	bcgsc.ca	37	2	203155936	203155936	+	Silent	SNP	A	A	C	rs3731700	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOP58	NM_015934	exon8	c.A723C	p.S241S	.	.	162	6	62	0	A|0.904;C|0.096	90
NOS1	4842	ucsc.edu;bcgsc.ca	37	12	117710328	117710328	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOS1	NM_000620	exon10	c.C1701T	p.Y567Y	.	.	78	8	41	0	.	154
NOS1AP	9722	bcgsc.ca	37	1	162039999	162039999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOS1AP	NM_014697	exon1	c.A32G	p.D11G	.	.	156	5	48	0	.	228
NOS1AP	9722	bcgsc.ca	37	1	162313735	162313735	+	Silent	SNP	C	C	T	rs3751284	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOS1AP	NM_014697	exon6	c.C564T	p.S188S	.	.	466	17	192	1	C|0.642;T|0.358	228
NOS1AP	9722	bcgsc.ca	37	1	162335256	162335256	+	Silent	SNP	C	C	T	rs348624	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOS1AP	NM_014697	exon9	c.C1002T	p.R334R	.	.	132	11	29	0	C|0.779;T|0.221	228
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26107858	26107858	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOS2	NM_000625	exon9	c.C939T	p.G313G	.	.	88	31	44	0	.	156
NOTCH1	4851	bcgsc.ca	37	9	139391636	139391636	+	Silent	SNP	G	G	A	rs2229974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOTCH1	NM_017617	exon34	c.C6555T	p.D2185D	.	.	156	9	63	0	G|0.341;A|0.659	5459
NOTCH2	4853	bcgsc.ca	37	1	120480583	120480583	+	Silent	SNP	G	G	A	rs7543643	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOTCH2	NM_001200001	exon20	c.C3234T	p.C1078C	.	.	199	8	119	0	G|0.925;A|0.075	1441
NOTCH4	4855	bcgsc.ca	37	6	32190390	32190390	+	Missense_Mutation	SNP	T	T	G	rs915894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOTCH4	NM_004557	exon3	c.A349C	p.K117Q	.	.	166	10	38	0	T|0.623;G|0.377	1321
NOTCH4	4855	bcgsc.ca	37	6	32190406	32190406	+	Silent	SNP	A	A	G	rs443198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOTCH4	NM_004557	exon3	c.T333C	p.G111G	.	.	176	11	42	0	A|0.576;G|0.424	1321
NOX3	50508	bcgsc.ca	37	6	155774608	155774608	+	Silent	SNP	C	C	T	rs34960420	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NOX3	NM_015718	exon4	c.G270A	p.P90P	.	.	275	14	79	0	C|0.888;T|0.112	91
NPAP1	23742	bcgsc.ca	37	15	24922230	24922230	+	Missense_Mutation	SNP	C	C	G	rs3742950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018958	exon1	c.C1216G	p.Q406E	.	.	108	5	32	0	C|0.512;G|0.488	.
NPAP1	23742	bcgsc.ca	37	15	24923390	24923390	+	Silent	SNP	C	C	T	rs60574723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018958	exon1	c.C2376T	p.F792F	.	.	160	7	55	0	C|0.605;T|0.395	.
NPAS1	4861	bcgsc.ca	37	19	47524394	47524394	+	Silent	SNP	C	C	G	rs28578816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPAS1	NM_002517	exon1	c.C90G	p.P30P	.	.	84	7	33	1	C|0.954;G|0.046	90
NPAS2	4862	ucsc.edu;bcgsc.ca	37	2	101591304	101591304	+	Missense_Mutation	SNP	A	A	G	rs2305160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPAS2	NM_002518	exon13	c.A1180G	p.T394A	.	.	55	9	25	0	A|0.235;G|0.765	94
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	34145548	34145548	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPAS3	NM_001164749	exon6	c.C690A	p.A230A	.	.	73	22	16	0	.	93
NPHP3	27031	bcgsc.ca	37	3	132438618	132438618	+	Silent	SNP	C	C	T	rs78527322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPHP3	NM_153240	exon2	c.G450A	p.A150A	.	.	454	11	182	0	C|0.991;T|0.009	91
NPHS1	4868	bcgsc.ca	37	19	36334419	36334419	+	Silent	SNP	G	G	A	rs437168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPHS1	NM_004646	exon17	c.C2289T	p.V763V	.	.	108	5	48	0	G|0.821;A|0.179	49
NPM1	4869	bcgsc.ca	37	5	170827175	170827175	+	Silent	SNP	T	T	C	rs61755048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPM1	NM_199185	exon7	c.T543C	p.F181F	.	.	112	6	33	0	T|0.989;C|0.011	12448
NPR2	4882	bcgsc.ca	37	9	35802583	35802583	+	Silent	SNP	C	C	T	rs5812	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPR2	NM_003995	exon11	c.C1794T	p.Y598Y	.	.	316	11	101	0	C|0.695;T|0.305	335
NPSR1	387129	bcgsc.ca	37	7	34874038	34874038	+	Missense_Mutation	SNP	C	C	G	rs727162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPSR1	NM_207172	exon6	c.C723G	p.S241R	.	.	309	13	108	1	C|0.656;G|0.344	94
NPY2R	4887	bcgsc.ca	37	4	156135250	156135250	+	Silent	SNP	C	C	T	rs2342674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NPY2R	NM_000910	exon2	c.C159T	p.L53L	.	.	388	14	115	0	C|0.967;T|0.033	523
NQO2	4835	bcgsc.ca	37	6	3015865	3015865	+	Silent	SNP	C	C	T	rs4149367	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NQO2	NM_000904	exon5	c.C405T	p.S135S	.	.	110	6	31	0	C|0.841;T|0.159	91
NR0B1	190	ucsc.edu;bcgsc.ca	37	X	30326983	30326983	+	Silent	SNP	C	C	T	rs2269345	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NR0B1	NM_000475	exon1	c.G498A	p.R166R	.	.	49	9	28	0	C|0.621;T|0.379	227
NR1D2	9975	bcgsc.ca	37	3	23997604	23997604	+	Silent	SNP	C	C	T	rs61732085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NR1D2	NM_005126	exon3	c.C360T	p.C120C	.	.	692	23	299	0	C|0.966;T|0.034	227
NR4A1	3164	ucsc.edu	37	12	52448188	52448188	+	Missense_Mutation	SNP	C	C	G	rs1882118	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NR4A1	NM_001202233	exon3	c.C115G	p.L39V	.	.	71	12	18	0	C|0.695;G|0.305	186
NR5A2	2494	bcgsc.ca	37	1	200017586	200017586	+	Silent	SNP	C	C	G	rs2821368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NR5A2	NM_205860	exon5	c.T750G	p.T250T	.	.	156	10	73	0	C|0.732;G|0.268	227
NRAP	4892	bcgsc.ca	37	10	115381747	115381747	+	Missense_Mutation	SNP	G	G	A	rs868738	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRAP	NM_001261463	exon24	c.C2650T	p.R884C	.	.	346	14	100	0	G|0.758;N|0.000	522
NRD1	4898	bcgsc.ca	37	1	52280276	52280276	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRD1	NM_002525	exon15	c.T1770C	p.A590A	.	.	129	5	68	0	.	90
NRIP1	8204	bcgsc.ca	37	21	16337448	16337448	+	Silent	SNP	C	C	A	rs28707654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRIP1	NM_003489	exon4	c.G3066T	p.G1022G	.	.	145	10	77	0	C|0.978;A|0.022	186
NRIP1	8204	bcgsc.ca	37	21	16337538	16337538	+	Silent	SNP	G	G	A	rs28587162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRIP1	NM_003489	exon4	c.C2976T	p.S992S	.	.	246	10	122	1	G|0.979;A|0.021	186
NRIP1	8204	bcgsc.ca	37	21	16338814	16338814	+	Missense_Mutation	SNP	T	T	C	rs9975169	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRIP1	NM_003489	exon4	c.A1700G	p.N567S	.	.	422	13	179	0	T|0.973;C|0.027	186
NRIP1	8204	hgsc.bcm.edu;bcgsc.ca	37	21	16337184	16337184	+	Silent	SNP	A	A	G	rs61733442	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRIP1	NM_003489	exon4	c.T3330C	p.P1110P	.	.	308	14	142	0	A|0.998;G|0.002	186
NRN1L	123904	bcgsc.ca	37	16	67919703	67919703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRN1L	NM_198443	exon2	c.T158C	p.L53P	.	.	182	6	49	0	.	90
NRXN3	9369	bcgsc.ca	37	14	79270039	79270039	+	Silent	SNP	G	G	A	rs17108255	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NRXN3	NM_004796	exon6	c.G1002A	p.E334E	.	.	171	7	46	0	G|0.976;A|0.024	587
NSUN3	63899	bcgsc.ca	37	3	93845062	93845062	+	Missense_Mutation	SNP	A	A	G	rs61730354	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NSUN3	NM_022072	exon6	c.A751G	p.I251V	.	.	208	12	87	0	A|0.982;G|0.018	91
NSUN4	387338	bcgsc.ca	37	1	46810670	46810670	+	Silent	SNP	T	T	C	rs17361763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NSUN4	NM_199044	exon2	c.T291C	p.D97D	.	.	163	5	78	0	T|0.802;C|0.198	90
NT5C1B	93034	bcgsc.ca	37	2	18757501	18757501	+	Silent	SNP	G	G	C	rs3902946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NT5C1B	NM_001199087	exon9	c.C1509G	p.L503L	.	.	411	32	169	0	G|0.689;C|0.311	47
NT5C1B	93034	ucsc.edu;bcgsc.ca	37	2	18768850	18768850	+	Silent	SNP	A	A	G	rs16985306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NT5C1B	NM_001199088	exon2	c.T39C	p.P13P	.	.	160	19	58	0	A|0.677;G|0.323	47
NT5DC3	51559	bcgsc.ca	37	12	104186946	104186946	+	Silent	SNP	G	G	T	rs1866295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NT5DC3	NM_001031701	exon9	c.C1015A	p.R339R	.	.	151	6	95	0	G|0.708;T|0.292	228
NT5E	4907	bcgsc.ca	37	6	86176780	86176780	+	Silent	SNP	A	A	G	rs35694460	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NT5E	NM_001204813	exon2	c.A342G	p.A114A	.	.	462	22	176	1	A|0.981;G|0.019	93
NTNG2	84628	bcgsc.ca	37	9	135073877	135073877	+	Silent	SNP	C	C	T	rs3824574	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NTNG2	NM_032536	exon3	c.C738T	p.F246F	.	.	85	6	42	0	C|0.711;T|0.289	90
NTRK2	4915	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	87366910	87366910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NTRK2	NM_001018065	exon12	c.G1306C	p.V436L	.	.	840	37	273	0	.	1404
NTRK3	4916	bcgsc.ca	37	15	88680684	88680684	+	Silent	SNP	G	G	A	rs1128994	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NTRK3	NM_001243101	exon7	c.C573T	p.N191N	.	.	136	10	29	0	G|0.705;A|0.295	3538
NTRK3	4916	bcgsc.ca	37	15	88727465	88727465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NTRK3	NM_001243101	exon4	c.T314C	p.L105P	.	.	116	5	37	0	.	3538
NTSR1	4923	bcgsc.ca	37	20	61391379	61391379	+	Silent	SNP	T	T	C	rs75911895	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NTSR1	NM_002531	exon4	c.T1017C	p.Y339Y	.	.	243	10	100	0	T|0.977;C|0.023	524
NUAK2	81788	bcgsc.ca	37	1	205273142	205273142	+	Silent	SNP	G	G	C	rs41264881	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUAK2	NM_030952	exon7	c.C1323G	p.P441P	.	.	116	9	40	0	G|0.874;C|0.126	391
NUB1	51667	bcgsc.ca;mdanderson.org	37	7	151046249	151046249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUB1	NM_016118	exon3	c.C280A	p.R94S	.	.	168	12	119	1	.	226
NUDT17	200035	bcgsc.ca	37	1	145586839	145586839	+	Silent	SNP	C	C	T	rs16827062	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUDT17	NM_001012758	exon7	c.G849A	p.K283K	.	.	306	20	71	0	C|0.991;G|0.001;T|0.008	90
NUGGC	389643	bcgsc.ca	37	8	27898694	27898694	+	Silent	SNP	C	C	T	rs17058503	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001010906	exon13	c.G1485A	p.A495A	.	.	75	7	31	0	C|0.928;T|0.072	.
NUGGC	389643	bcgsc.ca	37	8	27925744	27925744	+	Silent	SNP	G	G	A	rs114499791	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001010906	exon5	c.C469T	p.L157L	.	.	109	6	100	0	G|0.991;A|0.009	.
NUP133	55746	bcgsc.ca	37	1	229623338	229623338	+	Missense_Mutation	SNP	T	T	C	rs1065674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUP133	NM_018230	exon10	c.A1217G	p.Q406R	.	.	117	7	39	0	T|0.691;C|0.309	271
NUP155	9631	bcgsc.ca	37	5	37294473	37294473	+	Silent	SNP	T	T	C	rs1045908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUP155	NM_153485	exon33	c.A3888G	p.L1296L	.	.	331	8	156	2	T|0.750;C|0.250	205
NUP210L	91181	bcgsc.ca	37	1	154018655	154018655	+	Missense_Mutation	SNP	C	C	T	rs183446732	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUP210L	NM_001159484	exon27	c.G3586A	p.V1196I	.	.	214	12	83	0	C|0.995;T|0.005	77
NUP62	23636	bcgsc.ca	37	19	50412309	50412309	+	Silent	SNP	C	C	G	rs1290749	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUP62	NM_153719	exon3	c.G756C	p.G252G	.	.	165	6	71	0	C|0.969;G|0.031	615
NUP62CL	54830	bcgsc.ca	37	X	106396402	106396402	+	Missense_Mutation	SNP	A	A	G	rs1298577	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUP62CL	NM_017681	exon7	c.T530C	p.I177T	.	.	185	19	55	0	A|0.540;0|0.011	108
NUP62CL	54830	ucsc.edu;bcgsc.ca	37	X	106396455	106396455	+	Silent	SNP	A	A	G	rs1285590	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NUP62CL	NM_017681	exon7	c.T477C	p.R159R	.	.	267	29	74	0	A|0.553;G|0.447	108
NUSAP1	51203	bcgsc.ca	37	15	41667944	41667944	+	Silent	SNP	G	G	A	rs80023041	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_016359	exon9	c.G1041A	p.T347T	.	.	500	17	158	0	G|0.980;A|0.020	.
NVL	4931	bcgsc.ca	37	1	224488315	224488315	+	Silent	SNP	T	T	C	rs16846339	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NVL	NM_002533	exon10	c.A1011G	p.G337G	.	.	320	68	90	1	T|0.916;C|0.084	92
NXT1	29107	bcgsc.ca	37	20	23334735	23334735	+	Silent	SNP	G	G	A	rs34105430	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NXT1	NM_013248	exon2	c.G57A	p.E19E	.	.	228	6	88	0	G|0.977;A|0.023	69
NYNRIN	57523	bcgsc.ca	37	14	24883994	24883994	+	Silent	SNP	G	G	A	rs140818379		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	NYNRIN	NM_025081	exon9	c.G3039A	p.A1013A	.	.	133	6	68	0	G|0.998;A|0.002	3
OAF	220323	ucsc.edu;bcgsc.ca	37	11	120099791	120099791	+	Silent	SNP	C	C	T	rs2465654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OAF	NM_178507	exon4	c.C762T	p.F254F	.	.	59	8	37	0	C|0.869;T|0.131	68
OAS2	4939	bcgsc.ca	37	12	113447012	113447012	+	Silent	SNP	G	G	T	rs916974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OAS2	NM_002535	exon10	c.G2016T	p.G672G	.	.	182	6	80	0	G|0.975;T|0.025	91
OBFC1	79991	bcgsc.ca	37	10	105657363	105657363	+	Silent	SNP	C	C	G	rs11191853	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBFC1	NM_024928	exon7	c.G696C	p.V232V	.	.	135	7	43	0	C|0.656;G|0.344	69
OBSCN	84033	bcgsc.ca	37	1	228434455	228434455	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon14	c.C4260T	p.Y1420Y	.	.	179	7	62	0	.	403
OBSCN	84033	bcgsc.ca	37	1	228444496	228444496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon16	c.G4730C	p.S1577T	.	.	391	15	180	0	.	403
OBSCN	84033	bcgsc.ca	37	1	228451826	228451826	+	Missense_Mutation	SNP	C	C	T	rs453140	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon18	c.C5147T	p.A1716V	.	.	229	9	99	0	C|0.696;T|0.304	403
OBSCN	84033	bcgsc.ca	37	1	228475848	228475848	+	Missense_Mutation	SNP	G	G	A	rs437129	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon42	c.G11185A	p.A3729T	.	.	194	11	77	0	G|0.692;A|0.308	403
OBSCN	84033	bcgsc.ca	37	1	228482010	228482010	+	Silent	SNP	C	C	T	rs449133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon47	c.C12576T	p.D4192D	.	.	330	26	124	1	C|0.595;T|0.405	403
OBSCN	84033	bcgsc.ca	37	1	228509288	228509288	+	Missense_Mutation	SNP	C	C	G	rs199529556		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon66	c.C17617G	p.R5873G	.	.	96	6	36	0	.	403
OBSCN	84033	bcgsc.ca	37	1	228526665	228526665	+	Silent	SNP	T	T	C	rs505629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon80	c.T20067C	p.A6689A	.	.	166	11	53	0	T|0.479;C|0.521	403
OBSCN	84033	hgsc.bcm.edu	37	1	228511298	228511298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon67	c.C18514T	p.R6172C	.	.	165	8	65	0	.	403
OBSCN	84033	hgsc.bcm.edu;bcgsc.ca	37	1	228452066	228452066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon18	c.G5387A	p.R1796Q	.	.	248	10	129	0	.	403
OBSCN	84033	hgsc.bcm.edu;bcgsc.ca	37	1	228481947	228481947	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon47	c.G12513A	p.P4171P	.	.	277	14	116	0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228464309	228464309	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSCN	NM_001271223	exon26	c.C7504A	p.R2502R	.	.	246	76	82	0	.	403
OBSL1	23363	bcgsc.ca	37	2	220420785	220420785	+	Silent	SNP	G	G	A	rs3087971	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSL1	NM_001173431	exon14	c.C4566T	p.C1522C	.	.	229	13	100	0	G|0.730;A|0.270	71
OBSL1	23363	bcgsc.ca	37	2	220422774	220422774	+	Silent	SNP	A	A	G	rs2278201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSL1	NM_001173431	exon11	c.T3561C	p.P1187P	.	.	148	9	41	0	A|0.560;G|0.440	71
OBSL1	23363	hgsc.bcm.edu;bcgsc.ca	37	2	220421395	220421395	+	Missense_Mutation	SNP	C	C	T	rs140214067		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OBSL1	NM_001173431	exon13	c.G4117A	p.E1373K	.	.	211	12	52	0	C|0.990;T|0.010	71
ODF2L	57489	bcgsc.ca	37	1	86826169	86826169	+	Silent	SNP	G	G	A	rs12758659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ODF2L	NM_001184765	exon12	c.C1194T	p.L398L	.	.	444	19	192	0	G|0.961;A|0.039	69
ODF3L2	284451	bcgsc.ca	37	19	463855	463855	+	Missense_Mutation	SNP	G	G	A	rs116116196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ODF3L2	NM_182577	exon4	c.C859T	p.R287C	.	.	54	7	30	0	G|0.986;A|0.014	68
ODF4	146852	bcgsc.ca	37	17	8249116	8249116	+	Silent	SNP	C	C	T	rs2302869	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ODF4	NM_153007	exon3	c.C720T	p.T240T	.	.	93	8	37	0	C|0.904;T|0.096	69
OGDHL	55753	bcgsc.ca	37	10	50954850	50954850	+	Silent	SNP	G	G	A	rs75974530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OGDHL	NM_018245	exon10	c.C1242T	p.S414S	.	.	81	6	46	0	G|0.976;A|0.024	69
OGDHL	55753	bcgsc.ca	37	10	50959965	50959965	+	Silent	SNP	C	C	T	rs7090775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OGDHL	NM_018245	exon6	c.G657A	p.Q219Q	.	.	147	10	47	0	C|0.960;T|0.040	69
OGFOD3	79701	bcgsc.ca	37	17	80363209	80363209	+	Missense_Mutation	SNP	C	C	T	rs116625217	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_175902	exon6	c.G536A	p.R179Q	.	.	350	16	173	1	C|0.996;T|0.004	.
OLFM4	10562	bcgsc.ca	37	13	53603077	53603077	+	Missense_Mutation	SNP	T	T	C	rs35790097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OLFM4	NM_006418	exon1	c.T106C	p.S36P	.	.	146	8	37	0	T|0.901;C|0.099	69
OLFML2B	25903	bcgsc.ca	37	1	161968042	161968042	+	Silent	SNP	A	A	G	rs115147843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OLFML2B	NM_015441	exon6	c.T1047C	p.P349P	.	.	206	9	67	0	A|0.983;G|0.017	69
OMA1	115209	bcgsc.ca	37	1	58971831	58971831	+	Silent	SNP	G	G	A	rs3087585	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OMA1	NM_145243	exon8	c.C1266T	p.F422F	.	.	148	6	71	0	G|0.701;A|0.299	131
OMA1	115209	bcgsc.ca	37	1	59002319	59002319	+	Silent	SNP	A	A	G	rs17117702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OMA1	NM_145243	exon3	c.T595C	p.L199L	.	.	267	10	132	0	A|0.965;G|0.035	131
OMA1	115209	bcgsc.ca	37	1	59004766	59004766	+	Missense_Mutation	SNP	G	G	T	rs34466938	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OMA1	NM_145243	exon2	c.C201A	p.N67K	.	.	536	23	223	2	G|0.972;T|0.028	131
OOEP	441161	bcgsc.ca	37	6	74079024	74079024	+	Missense_Mutation	SNP	A	A	G	rs496530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080507	exon2	c.T275C	p.V92A	.	.	178	15	64	1	A|0.480;G|0.520	.
OPA1	4976	bcgsc.ca	37	3	193334991	193334991	+	Missense_Mutation	SNP	G	G	A	rs7624750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OPA1	NM_130836	exon4	c.G473A	p.S158N	.	.	460	25	194	0	G|0.517;A|0.483	68
OPA1	4976	ucsc.edu;bcgsc.ca	37	3	193374964	193374964	+	Silent	SNP	T	T	C	rs9851685	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OPA1	NM_130837	exon23	c.T2274C	p.A758A	.	.	149	16	120	0	T|0.517;C|0.483	68
OPN4	94233	ucsc.edu;bcgsc.ca	37	10	88422116	88422116	+	Missense_Mutation	SNP	C	C	T	rs1079610	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OPN4	NM_001030015	exon9	c.C1214T	p.T405I	.	.	69	9	35	0	C|0.284;T|0.716	69
OPRK1	4986	bcgsc.ca	37	8	54142052	54142052	+	Silent	SNP	G	G	A	rs78517449	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OPRK1	NM_000912	exon4	c.C948T	p.I316I	.	.	441	15	95	0	G|0.979;A|0.021	70
OPRM1	4988	bcgsc.ca	37	6	154360696	154360696	+	Missense_Mutation	SNP	C	C	T	rs1799972	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OPRM1	NM_001145279	exon3	c.C296T	p.A99V	.	.	87	6	36	0	C|0.942;T|0.058	69
OPRM1	4988	bcgsc.ca	37	6	154412385	154412385	+	Silent	SNP	G	G	A	rs1799975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OPRM1	NM_001145279	exon5	c.G1221A	p.T407T	.	.	456	20	178	0	G|0.993;A|0.007	69
OR10A5	144124	hgsc.bcm.edu;bcgsc.ca	37	11	6867015	6867015	+	Silent	SNP	T	T	C	rs7952340	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10A5	NM_178168	exon1	c.T102C	p.T34T	.	.	352	21	150	0	T|0.983;C|0.017	71
OR10A5	144124	hgsc.bcm.edu;bcgsc.ca	37	11	6867035	6867035	+	Missense_Mutation	SNP	A	A	T	rs7949377	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10A5	NM_178168	exon1	c.A122T	p.K41M	.	.	357	22	156	0	A|0.986;T|0.014	71
OR10AD1	121275	bcgsc.ca	37	12	48596254	48596254	+	Silent	SNP	A	A	C	rs11830378	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10AD1	NM_001004134	exon1	c.T822G	p.P274P	.	.	161	11	50	0	A|0.938;C|0.062	69
OR10C1	442194	bcgsc.ca	37	6	29407975	29407975	+	Silent	SNP	C	C	T	rs11755177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10C1	NM_013941	exon1	c.C183T	p.F61F	.	.	420	18	153	0	C|0.951;T|0.049	22
OR10C1	442194	bcgsc.ca	37	6	29408057	29408057	+	Missense_Mutation	SNP	C	C	A	rs11755182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10C1	NM_013941	exon1	c.C265A	p.R89S	.	.	185	8	97	0	C|0.952;A|0.048	22
OR10C1	442194	bcgsc.ca	37	6	29408153	29408153	+	Missense_Mutation	SNP	C	C	T	rs17177639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10C1	NM_013941	exon1	c.C361T	p.R121C	.	.	104	7	52	0	C|0.970;T|0.030	22
OR10C1	442194	bcgsc.ca	37	6	29408204	29408204	+	Missense_Mutation	SNP	C	C	T	rs17177646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10C1	NM_013941	exon1	c.C412T	p.R138W	.	.	103	6	48	0	C|0.971;T|0.029	22
OR10C1	442194	bcgsc.ca	37	6	29408270	29408270	+	Missense_Mutation	SNP	C	C	T	rs2074468	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10C1	NM_013941	exon1	c.C478T	p.P160S	.	.	153	9	64	0	C|0.901;T|0.099	22
OR10C1	442194	bcgsc.ca	37	6	29408554	29408554	+	Silent	SNP	A	A	C	rs10946991	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10C1	NM_013941	exon1	c.A762C	p.A254A	.	.	184	9	58	0	A|0.901;C|0.099	22
OR10G7	390265	bcgsc.ca	37	11	123909671	123909671	+	Missense_Mutation	SNP	G	G	A	rs11827843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10G7	NM_001004463	exon1	c.C38T	p.T13M	.	.	308	20	102	0	G|0.939;A|0.061	70
OR10G8	219869	bcgsc.ca	37	11	123900804	123900804	+	Missense_Mutation	SNP	G	G	A	rs147374446	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10G8	NM_001004464	exon1	c.G475A	p.A159T	.	.	310	12	129	0	G|0.998;A|0.002	92
OR10G8	219869	bcgsc.ca	37	11	123901223	123901223	+	Silent	SNP	G	G	T	rs114361645	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10G8	NM_001004464	exon1	c.G894T	p.L298L	.	.	186	6	80	0	G|0.999;T|0.001	92
OR10G9	219870	bcgsc.ca	37	11	123894522	123894522	+	Missense_Mutation	SNP	A	A	G	rs115910557	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10G9	NM_001001953	exon1	c.A803G	p.D268G	.	.	264	11	98	0	A|0.989;G|0.011	92
OR10J1	26476	bcgsc.ca	37	1	159409979	159409979	+	Missense_Mutation	SNP	T	T	G	rs74564875	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10J1	NM_012351	exon1	c.T431G	p.M144R	.	.	235	7	115	1	T|0.997;G|0.003	69
OR10J1	26476	bcgsc.ca	37	1	159410103	159410103	+	Silent	SNP	C	C	G	rs62641747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10J1	NM_012351	exon1	c.C555G	p.P185P	.	.	417	15	179	0	C|0.995;G|0.005	69
OR10V1	390201	bcgsc.ca	37	11	59480698	59480698	+	Silent	SNP	G	G	A	rs115927818	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10V1	NM_001005324	exon1	c.C621T	p.V207V	.	.	76	5	33	0	G|0.984;A|0.016	68
OR10V1	390201	ucsc.edu;bcgsc.ca	37	11	59480969	59480969	+	Missense_Mutation	SNP	A	A	G	rs472177	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10V1	NM_001005324	exon1	c.T350C	p.V117A	.	.	78	8	30	0	A|0.824;G|0.176	68
OR10X1	128367	bcgsc.ca	37	1	158548802	158548802	+	Silent	SNP	G	G	A	rs36102561	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR10X1	NM_001004477	exon1	c.C888T	p.P296P	.	.	205	7	100	0	G|0.977;A|0.023	69
OR13C5	138799	bcgsc.ca	37	9	107360851	107360851	+	Missense_Mutation	SNP	T	T	C	rs1523678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.A844G	p.I282V	.	.	318	9	164	0	T|0.634;C|0.366	72
OR13C5	138799	bcgsc.ca	37	9	107360922	107360922	+	Missense_Mutation	SNP	A	A	G	rs1851724	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.T773C	p.M258T	.	.	262	18	128	0	A|0.421;G|0.579	72
OR13C5	138799	bcgsc.ca	37	9	107361038	107361038	+	Silent	SNP	C	C	T	rs75872480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.G657A	p.T219T	.	.	193	7	119	0	C|0.998;T|0.002	72
OR13C5	138799	bcgsc.ca	37	9	107361111	107361111	+	Missense_Mutation	SNP	T	T	C	rs6479259	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.A584G	p.N195S	.	.	371	14	152	0	T|0.901;C|0.099	72
OR13C5	138799	bcgsc.ca	37	9	107361129	107361129	+	Missense_Mutation	SNP	C	C	T	rs4117966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.G566A	p.C189Y	.	.	404	17	164	0	C|0.726;T|0.274	72
OR13C5	138799	bcgsc.ca	37	9	107361312	107361312	+	Missense_Mutation	SNP	T	T	C	rs75876188		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.A383G	p.N128S	.	.	395	11	184	2	.	72
OR13C5	138799	bcgsc.ca	37	9	107361642	107361642	+	Missense_Mutation	SNP	G	G	A	rs41430948		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C5	NM_001004482	exon1	c.C53T	p.S18F	.	.	581	21	366	1	G|1.000;|0.000	72
OR13C8	138802	bcgsc.ca	37	9	107331504	107331504	+	Missense_Mutation	SNP	C	C	A	rs7026705	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C8	NM_001004483	exon1	c.C56A	p.A19D	.	.	190	11	67	0	C|0.434;A|0.566	70
OR13C9	286362	bcgsc.ca	37	9	107380215	107380215	+	Missense_Mutation	SNP	T	T	A	rs993658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C9	NM_001001956	exon1	c.A271T	p.T91S	.	.	597	15	331	0	T|0.743;A|0.257	68
OR13C9	286362	bcgsc.ca	37	9	107380414	107380414	+	Missense_Mutation	SNP	C	C	A	rs2900373	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13C9	NM_001001956	exon1	c.G72T	p.E24D	.	.	426	17	288	0	A|0.365;C|0.635	68
OR13D1	286365	bcgsc.ca	37	9	107457332	107457332	+	Silent	SNP	C	C	T	rs61742675	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13D1	NM_001004484	exon1	c.C630T	p.T210T	.	.	511	24	214	0	C|0.923;T|0.077	70
OR13F1	138805	hgsc.bcm.edu;bcgsc.ca	37	9	107266824	107266824	+	Missense_Mutation	SNP	T	T	C	rs7018553	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13F1	NM_001004485	exon1	c.T281C	p.F94S	.	.	177	10	95	0	T|0.992;C|0.008	115
OR13G1	441933	bcgsc.ca	37	1	247835674	247835674	+	Missense_Mutation	SNP	G	G	A	rs28446289	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13G1	NM_001005487	exon1	c.C670T	p.R224C	.	.	145	5	70	0	G|0.665;A|0.335	69
OR13G1	441933	bcgsc.ca	37	1	247836008	247836008	+	Silent	SNP	G	G	A	rs28555391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR13G1	NM_001005487	exon1	c.C336T	p.F112F	.	.	169	9	64	0	G|0.664;A|0.336	69
OR14C36	127066	bcgsc.ca	37	1	248512094	248512094	+	Silent	SNP	C	C	T	rs28728105	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR14C36	NM_001001918	exon1	c.C18T	p.T6T	.	.	389	21	132	0	C|0.513;T|0.487	48
OR14C36	127066	bcgsc.ca	37	1	248512637	248512637	+	Silent	SNP	C	C	T	rs2039824	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR14C36	NM_001001918	exon1	c.C561T	p.C187C	.	.	625	57	130	1	C|0.518;T|0.482	48
OR14C36	127066	bcgsc.ca	37	1	248512749	248512749	+	Missense_Mutation	SNP	G	G	A	rs28377739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR14C36	NM_001001918	exon1	c.G673A	p.G225R	.	.	819	50	189	1	G|0.502;A|0.498	48
OR14C36	127066	bcgsc.ca	37	1	248512767	248512767	+	Missense_Mutation	SNP	G	G	T	rs28545014	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR14C36	NM_001001918	exon1	c.G691T	p.D231Y	.	.	741	47	170	0	G|0.502;T|0.498	48
OR1K1	392392	hgsc.bcm.edu;bcgsc.ca	37	9	125562623	125562623	+	Silent	SNP	C	C	T	rs140842320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1K1	NM_080859	exon1	c.C222T	p.F74F	.	.	198	11	68	0	C|0.999;T|0.001	69
OR1L1	26737	bcgsc.ca	37	9	125424189	125424189	+	Missense_Mutation	SNP	C	C	G	rs73571128	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1L1	NM_001005236	exon1	c.C195G	p.I65M	.	.	306	12	101	0	C|0.956;G|0.044	72
OR1L1	26737	bcgsc.ca	37	9	125424277	125424277	+	Missense_Mutation	SNP	A	A	G	rs70157	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1L1	NM_001005236	exon1	c.A283G	p.S95G	.	.	259	11	97	0	A|0.861;G|0.139	72
OR1L1	26737	bcgsc.ca	37	9	125424289	125424289	+	Missense_Mutation	SNP	A	A	G	rs16912055	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1L1	NM_001005236	exon1	c.A295G	p.T99A	.	.	221	12	92	0	A|0.983;G|0.017	72
OR1L3	26735	bcgsc.ca	37	9	125437725	125437725	+	Missense_Mutation	SNP	T	T	C	rs16912096	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1L3	NM_001005234	exon1	c.T317C	p.V106A	.	.	231	10	81	0	T|0.931;C|0.069	69
OR1L3	26735	bcgsc.ca	37	9	125438244	125438244	+	Missense_Mutation	SNP	T	T	C	rs74634130	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1L3	NM_001005234	exon1	c.T836C	p.V279A	.	.	323	10	129	1	T|0.946;C|0.054	69
OR1L3	26735	ucsc.edu;bcgsc.ca	37	9	125437769	125437769	+	Missense_Mutation	SNP	A	A	G	rs16912099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR1L3	NM_001005234	exon1	c.A361G	p.N121D	.	.	275	26	107	1	A|0.868;G|0.132	69
OR2A25	392138	bcgsc.ca	37	7	143771408	143771408	+	Silent	SNP	G	G	C	rs59319753	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2A25	NM_001004488	exon1	c.G96C	p.L32L	.	.	399	21	88	0	G|0.684;C|0.316	90
OR2AE1	81392	bcgsc.ca	37	7	99473801	99473801	+	Missense_Mutation	SNP	A	A	G	rs73403577	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2AE1	NM_001005276	exon1	c.T856C	p.S286P	.	.	220	15	83	0	A|0.933;G|0.067	90
OR2AE1	81392	bcgsc.ca	37	7	99474007	99474007	+	Missense_Mutation	SNP	T	T	C	rs60737583	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2AE1	NM_001005276	exon1	c.A650G	p.Y217C	.	.	105	6	49	0	T|0.932;C|0.068	90
OR2AE1	81392	bcgsc.ca	37	7	99474427	99474427	+	Missense_Mutation	SNP	A	A	G	rs2572023	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2AE1	NM_001005276	exon1	c.T230C	p.I77T	.	.	142	10	70	0	G|0.588;N|0.000	90
OR2AG2	338755	bcgsc.ca	37	11	6789294	6789294	+	Missense_Mutation	SNP	G	G	C	rs7924459	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2AG2	NM_001004490	exon1	c.C895G	p.R299G	.	.	265	20	131	1	G|0.788;C|0.212	71
OR2C3	81472	bcgsc.ca	37	1	247695698	247695698	+	Missense_Mutation	SNP	G	G	A	rs138226636	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2C3	NM_198074	exon2	c.C116T	p.S39L	.	.	136	12	55	0	G|0.999;A|0.001	70
OR2D3	120775	bcgsc.ca	37	11	6942628	6942628	+	Silent	SNP	A	A	C	rs11605995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2D3	NM_001004684	exon1	c.A396C	p.A132A	.	.	529	22	169	0	A|0.655;C|0.345	68
OR2D3	120775	bcgsc.ca	37	11	6942952	6942952	+	Silent	SNP	T	T	C	rs2035844	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2D3	NM_001004684	exon1	c.T720C	p.T240T	.	.	538	29	233	0	T|0.667;C|0.333	68
OR2H1	26716	bcgsc.ca	37	6	29430170	29430170	+	Silent	SNP	T	T	C	rs2073148	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2H1	NM_030883	exon3	c.T624C	p.P208P	.	.	305	8	96	0	T|0.864;C|0.136	90
OR2J2	26707	hgsc.bcm.edu;bcgsc.ca	37	6	29141732	29141732	+	Missense_Mutation	SNP	C	C	A	rs114093208	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2J2	NM_030905	exon1	c.C320A	p.A107E	.	.	596	35	197	0	C|0.995;A|0.005	68
OR2J3	442186	bcgsc.ca	37	6	29080004	29080004	+	Missense_Mutation	SNP	A	A	G	rs28757581	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2J3	NM_001005216	exon1	c.A337G	p.T113A	.	.	686	21	213	2	A|0.839;G|0.161	90
OR2J3	442186	bcgsc.ca	37	6	29080344	29080344	+	Missense_Mutation	SNP	G	G	A	rs3749977	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2J3	NM_001005216	exon1	c.G677A	p.R226Q	.	.	473	31	191	0	G|0.651;A|0.349	90
OR2K2	26248	bcgsc.ca	37	9	114090358	114090358	+	Missense_Mutation	SNP	G	G	A	rs138721319	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2K2	NM_205859	exon1	c.C356T	p.A119V	.	.	87	8	48	1	G|0.999;A|0.001	69
OR2L13	284521	bcgsc.ca	37	1	248263495	248263495	+	Missense_Mutation	SNP	T	T	G	rs74153072	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2L13	NM_175911	exon3	c.T818G	p.L273R	.	.	124	5	51	0	T|0.943;G|0.057	70
OR2L8	391190	bcgsc.ca	37	1	248112807	248112807	+	Silent	SNP	C	C	G	rs114889258	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2L8	NM_001001963	exon1	c.C648G	p.S216S	.	.	447	13	155	0	C|0.994;G|0.006	70
OR2M1P	388762	bcgsc.ca	37	1	248285441	248285441	+	RNA	SNP	G	G	T	rs6587422	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M1P	.	.	.	.	.	.	310	16	133	0	G|0.809;T|0.191	46
OR2M1P	388762	bcgsc.ca	37	1	248285487	248285487	+	RNA	SNP	A	A	G	rs6587423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M1P	.	.	.	.	.	.	336	15	126	0	A|0.856;G|0.144	46
OR2M3	127062	bcgsc.ca	37	1	248366702	248366702	+	Silent	SNP	G	G	A	rs4916112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M3	NM_001004689	exon1	c.G333A	p.E111E	.	.	383	12	144	1	G|0.470;A|0.530	70
OR2M3	127062	hgsc.bcm.edu;bcgsc.ca	37	1	248367150	248367150	+	Missense_Mutation	SNP	C	C	T	rs147728074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M3	NM_001004689	exon1	c.C781T	p.R261W	.	.	376	20	138	0	C|1.000;T|0.000	70
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248367162	248367162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M3	NM_001004689	exon1	c.G793T	p.D265Y	.	.	367	114	121	0	.	70
OR2M7	391196	bcgsc.ca	37	1	248487338	248487338	+	Missense_Mutation	SNP	C	C	A	rs61736660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M7	NM_001004691	exon1	c.G533T	p.C178F	.	.	643	53	286	0	C|0.276;A|0.724	70
OR2M7	391196	bcgsc.ca	37	1	248487638	248487638	+	Missense_Mutation	SNP	A	A	G	rs7555310	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M7	NM_001004691	exon1	c.T233C	p.V78A	.	.	402	30	168	1	A|0.247;G|0.753	70
OR2M7	391196	bcgsc.ca	37	1	248487768	248487768	+	Missense_Mutation	SNP	A	A	G	rs7555424	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2M7	NM_001004691	exon1	c.T103C	p.F35L	.	.	445	33	196	1	A|0.245;G|0.755	70
OR2S2	56656	hgsc.bcm.edu;bcgsc.ca	37	9	35958008	35958008	+	Missense_Mutation	SNP	C	C	T	rs2233559	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2S2	NM_019897	exon1	c.G88A	p.V30M	.	.	127	6	53	0	C|0.996;T|0.004	68
OR2T12	127064	bcgsc.ca	37	1	248457979	248457979	+	Missense_Mutation	SNP	C	C	A	rs6667171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T12	NM_001004692	exon1	c.G902T	p.R301L	.	.	333	26	135	1	C|0.242;A|0.758	71
OR2T27	403239	ucsc.edu	37	1	248813829	248813829	+	Silent	SNP	G	G	A	rs75539013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T27	NM_001001824	exon1	c.C357T	p.S119S	.	.	150	8	51	0	G|0.977;A|0.023	47
OR2T33	391195	bcgsc.ca	37	1	248436192	248436192	+	Missense_Mutation	SNP	T	T	G	rs113609073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T33	NM_001004695	exon1	c.A925C	p.I309L	.	.	297	13	123	1	T|0.979;G|0.021	114
OR2T33	391195	bcgsc.ca	37	1	248436611	248436611	+	Missense_Mutation	SNP	G	G	A	rs10888338	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T33	NM_001004695	exon1	c.C506T	p.A169V	.	.	702	30	324	0	G|0.353;A|0.647	114
OR2T6	254879	bcgsc.ca	37	1	248551079	248551079	+	Missense_Mutation	SNP	C	C	A	rs6693032	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T6	NM_001005471	exon1	c.C170A	p.T57N	.	.	253	9	92	1	C|0.940;A|0.060	71
OR2T6	254879	bcgsc.ca	37	1	248551385	248551385	+	Missense_Mutation	SNP	T	T	C	rs6701129	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T6	NM_001005471	exon1	c.T476C	p.L159P	.	.	440	14	124	1	T|0.935;C|0.065	71
OR2T8	343172	bcgsc.ca	37	1	248084511	248084511	+	Silent	SNP	T	T	C	rs72635981		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T8	NM_001005522	exon1	c.T192C	p.L64L	.	.	492	33	198	0	.	68
OR2T8	343172	bcgsc.ca	37	1	248085232	248085232	+	Missense_Mutation	SNP	C	C	T	rs6695357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2T8	NM_001005522	exon1	c.C913T	p.R305W	.	.	185	13	51	0	C|0.983;T|0.017	68
OR2Y1	134083	bcgsc.ca	37	5	180166866	180166866	+	Missense_Mutation	SNP	G	G	A	rs61737927	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2Y1	NM_001001657	exon1	c.C193T	p.H65Y	.	.	83	5	66	0	G|0.974;A|0.026	68
OR2Y1	134083	bcgsc.ca	37	5	180166877	180166877	+	Missense_Mutation	SNP	A	A	T	rs73815111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2Y1	NM_001001657	exon1	c.T182A	p.F61Y	.	.	84	6	68	0	A|0.984;T|0.016	68
OR2Z1	284383	bcgsc.ca	37	19	8841461	8841461	+	Missense_Mutation	SNP	G	G	A	rs61746162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2Z1	NM_001004699	exon1	c.G71A	p.R24H	.	.	226	10	76	0	G|0.984;A|0.016	69
OR2Z1	284383	bcgsc.ca	37	19	8841558	8841558	+	Silent	SNP	T	T	C	rs28324	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR2Z1	NM_001004699	exon1	c.T168C	p.H56H	.	.	300	19	96	0	T|0.301;C|0.699	69
OR3A3	8392	bcgsc.ca	37	17	3324810	3324810	+	Missense_Mutation	SNP	A	A	G	rs227787	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR3A3	NM_012373	exon1	c.A949G	p.K317E	.	.	151	13	65	0	G|0.262;N|0.001	68
OR3A4P	390756	bcgsc.ca	37	17	3213728	3213728	+	RNA	SNP	A	A	G	rs9905684	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	304	10	120	0	A|0.801;G|0.199	.
OR3A4P	390756	bcgsc.ca	37	17	3213862	3213862	+	RNA	SNP	C	C	G	rs9905086	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	317	9	136	0	C|0.802;G|0.198	.
OR3A4P	390756	bcgsc.ca	37	17	3214106	3214106	+	RNA	SNP	C	C	A	rs9911226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	300	15	103	0	C|0.805;A|0.195	.
OR3A4P	390756	bcgsc.ca	37	17	3214128	3214128	+	RNA	SNP	A	A	G	rs9912090	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	356	16	111	0	A|0.834;G|0.166	.
OR3A4P	390756	bcgsc.ca	37	17	3214502	3214502	+	RNA	SNP	G	G	A	rs8076130	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	263	12	60	0	G|0.935;A|0.065	.
OR4A47	403253	bcgsc.ca	37	11	48510777	48510777	+	Missense_Mutation	SNP	G	G	A	rs7103992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4A47	NM_001005512	exon1	c.G433A	p.V145M	.	.	479	20	195	1	G|0.440;A|0.560	92
OR4B1	119765	bcgsc.ca	37	11	48239071	48239071	+	Missense_Mutation	SNP	C	C	A	rs12292056	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4B1	NM_001005470	exon1	c.C710A	p.T237N	.	.	435	25	140	0	C|0.890;A|0.110	72
OR4C6	219432	hgsc.bcm.edu;bcgsc.ca	37	11	55432933	55432933	+	Silent	SNP	C	C	T	rs77687368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4C6	NM_001004704	exon1	c.C291T	p.T97T	.	.	603	29	191	0	C|0.994;T|0.006	70
OR4D1	26689	bcgsc.ca	37	17	56233034	56233034	+	Missense_Mutation	SNP	C	C	A	rs7218964	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4D1	NM_012374	exon1	c.C520A	p.L174I	.	.	271	9	101	0	C|0.768;A|0.232	91
OR4D9	390199	hgsc.bcm.edu;bcgsc.ca	37	11	59282608	59282608	+	Missense_Mutation	SNP	T	T	G	rs116643910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4D9	NM_001004711	exon1	c.T223G	p.S75A	.	.	314	15	117	0	T|0.986;G|0.014	68
OR4E2	26686	bcgsc.ca	37	14	22133416	22133416	+	Silent	SNP	A	A	G	rs12717305	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4E2	NM_001001912	exon1	c.A120G	p.S40S	.	.	236	9	83	0	A|0.520;G|0.480	94
OR4E2	26686	bcgsc.ca	37	14	22134018	22134018	+	Missense_Mutation	SNP	C	C	T	rs61732411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4E2	NM_001001912	exon1	c.C722T	p.S241L	.	.	278	10	91	0	C|0.830;T|0.170	94
OR4F6	390648	bcgsc.ca	37	15	102346030	102346030	+	Silent	SNP	G	G	A	rs401632	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4F6	NM_001005326	exon1	c.G108A	p.V36V	.	.	510	19	141	0	G|0.944;A|0.056	69
OR4K13	390433	bcgsc.ca	37	14	20502120	20502120	+	Silent	SNP	C	C	T	rs17277032	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K13	NM_001004714	exon1	c.G798A	p.S266S	.	.	123	5	78	0	C|0.636;T|0.364	70
OR4K13	390433	hgsc.bcm.edu;bcgsc.ca	37	14	20502779	20502779	+	Missense_Mutation	SNP	C	C	T	rs144683363	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K13	NM_001004714	exon1	c.G139A	p.V47M	.	.	216	10	82	0	C|0.985;T|0.015	70
OR4K15	81127	bcgsc.ca	37	14	20443943	20443943	+	Missense_Mutation	SNP	A	A	G	rs45516109	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.A266G	p.N89S	.	.	203	17	106	0	.	69
OR4K15	81127	bcgsc.ca	37	14	20444026	20444026	+	Missense_Mutation	SNP	T	T	G	rs3861513	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.T349G	p.S117A	.	.	297	11	101	0	T|0.768;G|0.232	69
OR4K15	81127	bcgsc.ca	37	14	20444193	20444193	+	Silent	SNP	A	A	C	rs2318556	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.A516C	p.S172S	.	.	354	33	105	0	A|0.619;C|0.380;G|0.001	69
OR4K15	81127	bcgsc.ca	37	14	20444441	20444441	+	Missense_Mutation	SNP	C	C	A	rs10135246	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.C764A	p.A255E	.	.	353	14	116	1	C|0.776;A|0.224	69
OR4K15	81127	bcgsc.ca	37	14	20444588	20444588	+	Missense_Mutation	SNP	T	T	C	rs2153466	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.T911C	p.L304P	.	.	353	22	147	0	T|0.613;C|0.387	69
OR4K15	81127	bcgsc.ca	37	14	20444607	20444607	+	Missense_Mutation	SNP	C	C	G	rs10135467	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.C930G	p.I310M	.	.	316	10	132	0	C|0.770;G|0.230	69
OR4K15	81127	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20443872	20443872	+	Silent	SNP	C	C	G	rs78523266		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K15	NM_001005486	exon1	c.C195G	p.G65G	.	.	227	27	98	0	.	69
OR4K1	79544	bcgsc.ca	37	14	20404091	20404091	+	Missense_Mutation	SNP	G	G	A	rs12885778	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K1	NM_001004063	exon1	c.G266A	p.R89H	.	.	416	12	149	0	G|0.686;A|0.314	71
OR4K1	79544	bcgsc.ca	37	14	20404395	20404395	+	Missense_Mutation	SNP	G	G	A	rs74705836	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K1	NM_001004063	exon1	c.G570A	p.M190I	.	.	237	10	81	0	G|0.966;A|0.034	71
OR4K2	390431	bcgsc.ca	37	14	20345087	20345087	+	Missense_Mutation	SNP	G	G	T	rs143722320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K2	NM_001005501	exon1	c.G661T	p.V221F	.	.	458	12	129	0	G|0.998;T|0.002	72
OR4K5	79317	bcgsc.ca	37	14	20389039	20389039	+	Missense_Mutation	SNP	A	A	G	rs115414820	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4K5	NM_001005483	exon1	c.A274G	p.I92V	.	.	485	17	148	0	A|0.971;G|0.029	70
OR4M1	441670	bcgsc.ca	37	14	20248828	20248828	+	Missense_Mutation	SNP	C	C	T	rs2635535	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4M1	NM_001005500	exon1	c.C347T	p.T116I	.	.	665	15	255	0	C|0.735;T|0.265	68
OR4M1	441670	bcgsc.ca	37	14	20249176	20249176	+	Missense_Mutation	SNP	G	G	A	rs2815960	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4M1	NM_001005500	exon1	c.G695A	p.G232D	.	.	814	22	354	0	G|0.739;A|0.261	68
OR4N2	390429	bcgsc.ca	37	14	20295860	20295860	+	Missense_Mutation	SNP	T	T	A	rs147645070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N2	NM_001004723	exon1	c.T253A	p.F85I	.	.	439	14	151	0	T|0.992;A|0.008	71
OR4N2	390429	bcgsc.ca	37	14	20296010	20296010	+	Missense_Mutation	SNP	G	G	C	rs17114261	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N2	NM_001004723	exon1	c.G403C	p.V135L	.	.	569	40	196	0	G|0.824;C|0.176	71
OR4N2	390429	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20295763	20295763	+	Silent	SNP	C	C	T	rs11621854	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N2	NM_001004723	exon1	c.C156T	p.D52D	.	.	481	51	176	0	C|0.764;T|0.236	71
OR4N2	390429	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20296004	20296004	+	Missense_Mutation	SNP	C	C	T	rs2318279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N2	NM_001004723	exon1	c.C397T	p.P133S	.	.	548	54	189	0	C|0.753;T|0.247	71
OR4N3P	390539	bcgsc.ca	37	15	22414190	22414190	+	RNA	SNP	T	T	C	rs28695837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	654	14	224	0	T|0.625;C|0.375	.
OR4N4	283694	bcgsc.ca	37	15	22382655	22382655	+	Missense_Mutation	SNP	A	A	C	rs535034	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N4	NM_001005241	exon1	c.A183C	p.L61F	.	.	920	56	290	0	A|0.775;C|0.225	73
OR4N4	283694	bcgsc.ca	37	15	22382828	22382828	+	Missense_Mutation	SNP	C	C	A	rs62006709	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N4	NM_001005241	exon1	c.C356A	p.A119D	.	.	705	17	222	0	C|0.826;A|0.174	73
OR4N4	283694	bcgsc.ca	37	15	22383064	22383064	+	Missense_Mutation	SNP	C	C	A	rs67576397	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N4	NM_001005241	exon1	c.C592A	p.L198I	.	.	706	38	245	0	ATG|0.500;CTA|0.500	73
OR4N4	283694	bcgsc.ca;mdanderson.org	37	15	22382821	22382821	+	Missense_Mutation	SNP	G	G	C	rs75595142		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4N4	NM_001005241	exon1	c.G349C	p.V117L	.	.	670	55	221	0	.	73
OR4P4	81300	bcgsc.ca	37	11	55406686	55406686	+	Missense_Mutation	SNP	T	T	G	rs73469483	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4P4	NM_001004124	exon1	c.T853G	p.Y285D	.	.	225	7	136	0	T|0.982;G|0.018	68
OR4Q3	441669	bcgsc.ca	37	14	20216138	20216138	+	Missense_Mutation	SNP	A	A	T	rs147266941	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4Q3	NM_172194	exon1	c.A552T	p.Q184H	.	.	290	11	83	0	A|0.997;T|0.003	71
OR4S1	256148	bcgsc.ca	37	11	48328644	48328644	+	Silent	SNP	C	C	T	rs753095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4S1	NM_001004725	exon1	c.C870T	p.N290N	.	.	206	7	121	0	C|0.618;T|0.382	69
OR4X1	390113	bcgsc.ca	37	11	48286179	48286179	+	Missense_Mutation	SNP	A	A	G	rs150219119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR4X1	NM_001004726	exon1	c.A767G	p.Y256C	.	.	220	13	78	0	A|0.995;G|0.005	71
OR51B2	79345	bcgsc.ca	37	11	5345128	5345128	+	Missense_Mutation	SNP	G	G	A	rs10837814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51B2	NM_033180	exon1	c.C400T	p.L134F	.	.	101	7	42	0	G|0.512;A|0.488	71
OR51B4	79339	bcgsc.ca	37	11	5323057	5323057	+	Missense_Mutation	SNP	A	A	C	rs138033382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51B4	NM_033179	exon1	c.T120G	p.N40K	.	.	185	14	107	0	A|0.998;C|0.002	70
OR51B5	282763	ucsc.edu;bcgsc.ca	37	11	5364276	5364276	+	Missense_Mutation	SNP	G	G	A	rs4910551	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51B5	NM_001005567	exon5	c.C479T	p.P160L	.	.	100	13	39	0	G|0.650;A|0.350	91
OR51B5	282763	ucsc.edu;bcgsc.ca	37	11	5364450	5364450	+	Missense_Mutation	SNP	A	A	G	rs11036912	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51B5	NM_001005567	exon5	c.T305C	p.I102T	.	.	36	7	22	0	A|0.645;G|0.355	91
OR51B6	390058	bcgsc.ca	37	11	5373114	5373114	+	Missense_Mutation	SNP	G	G	A	rs5006888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51B6	NM_001004750	exon1	c.G377A	p.S126N	.	.	283	9	103	0	G|0.408;A|0.592	70
OR51B6	390058	bcgsc.ca	37	11	5373646	5373646	+	Silent	SNP	T	T	C	rs5024041	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51B6	NM_001004750	exon1	c.T909C	p.R303R	.	.	112	12	68	1	T|0.406;C|0.594	70
OR51F2	119694	bcgsc.ca	37	11	4842925	4842925	+	Silent	SNP	C	C	A	rs7114668	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51F2	NM_001004753	exon1	c.C310A	p.R104R	.	.	174	7	97	0	C|0.913;A|0.087	70
OR51G2	81282	bcgsc.ca	37	11	4936613	4936613	+	Missense_Mutation	SNP	G	G	T	rs16907312	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51G2	NM_001005238	exon1	c.C281A	p.A94E	.	.	77	5	45	0	G|0.831;T|0.169	70
OR51M1	390059	bcgsc.ca	37	11	5410646	5410646	+	Silent	SNP	G	G	T	rs116535306	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51M1	NM_001004756	exon1	c.G18T	p.S6S	.	.	296	10	123	1	G|0.987;T|0.013	68
OR51M1	390059	hgsc.bcm.edu;bcgsc.ca	37	11	5411028	5411028	+	Missense_Mutation	SNP	C	C	T	rs74683499	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR51M1	NM_001004756	exon1	c.C400T	p.R134C	.	.	256	14	73	0	C|0.982;T|0.018	68
OR52B6	340980	bcgsc.ca	37	11	5602275	5602275	+	Missense_Mutation	SNP	A	A	G	rs1077126	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52B6	NM_001005162	exon1	c.A169G	p.T57A	.	.	229	13	107	0	A|0.483;G|0.517	69
OR52E8	390079	bcgsc.ca	37	11	5878913	5878913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52E8	NM_001005168	exon1	c.C20T	p.T7M	.	.	139	7	72	0	.	70
OR52H1	390067	bcgsc.ca	37	11	5566112	5566112	+	Silent	SNP	C	C	T	rs1995156	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52H1	NM_001005289	exon1	c.G642A	p.T214T	.	.	107	6	84	0	C|0.517;T|0.483	114
OR52H1	390067	bcgsc.ca	37	11	5566365	5566365	+	Missense_Mutation	SNP	T	T	C	rs1566275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52H1	NM_001005289	exon1	c.A389G	p.H130R	.	.	104	7	50	0	T|0.136;C|0.864	114
OR52I1	390037	bcgsc.ca	37	11	4615882	4615882	+	Missense_Mutation	SNP	T	T	C	rs187135959		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52I1	NM_001005169	exon1	c.T614C	p.I205T	.	.	237	12	94	0	T|0.999;C|0.001	24
OR52I1	390037	bcgsc.ca	37	11	4615987	4615987	+	Missense_Mutation	SNP	A	A	C	rs1876025		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52I1	NM_001005169	exon1	c.A719C	p.K240T	.	.	257	9	90	0	A|0.988;C|0.012	24
OR52J3	119679	bcgsc.ca	37	11	5068431	5068431	+	Missense_Mutation	SNP	G	G	A	rs17350764	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52J3	NM_001001916	exon1	c.G676A	p.V226I	.	.	752	31	400	0	G|0.792;A|0.208	71
OR52K2	119774	bcgsc.ca	37	11	4471473	4471473	+	Missense_Mutation	SNP	C	C	T	rs7934336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR52K2	NM_001005172	exon1	c.C904T	p.R302C	.	.	167	7	76	0	C|0.868;T|0.132	70
OR56A1	120796	bcgsc.ca	37	11	6048056	6048056	+	Silent	SNP	T	T	C	rs11040335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR56A1	NM_001001917	exon1	c.A879G	p.A293A	.	.	149	8	79	1	T|0.695;C|0.305	115
OR56A5	390084	mdanderson.org	37	11	5989415	5989415	+	Missense_Mutation	SNP	C	C	T	rs7114672	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001146033	exon1	c.G310A	p.V104M	.	.	131	15	58	0	A|0.039;C|0.419;T|0.542	.
OR5AC2	81050	bcgsc.ca	37	3	97806616	97806616	+	Missense_Mutation	SNP	G	G	A	rs4518168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5AC2	NM_054106	exon1	c.G600A	p.M200I	.	.	148	7	78	0	G|0.491;A|0.509	69
OR5AN1	390195	bcgsc.ca	37	11	59132486	59132486	+	Silent	SNP	G	G	A	rs73480618	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5AN1	NM_001004729	exon1	c.G555A	p.L185L	.	.	310	11	107	0	G|0.984;A|0.016	69
OR5AP2	338675	ucsc.edu;bcgsc.ca	37	11	56409603	56409603	+	Missense_Mutation	SNP	C	C	T	rs11606499	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5AP2	NM_001002925	exon1	c.G313A	p.A105T	.	.	56	7	40	0	C|0.834;T|0.166	71
OR5AU1	390445	bcgsc.ca	37	14	21623290	21623290	+	Missense_Mutation	SNP	T	T	C	rs7145814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5AU1	NM_001004731	exon1	c.A895G	p.I299V	.	.	156	7	73	0	T|0.240;C|0.760	68
OR5AU1	390445	bcgsc.ca	37	14	21623303	21623303	+	Silent	SNP	G	G	T	rs45603634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5AU1	NM_001004731	exon1	c.C882A	p.S294S	.	.	150	7	68	0	G|0.933;T|0.067	68
OR5AU1	390445	bcgsc.ca	37	14	21623836	21623836	+	Missense_Mutation	SNP	G	G	A	rs4982419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5AU1	NM_001004731	exon1	c.C349T	p.L117F	.	.	190	8	61	0	G|0.303;A|0.697	68
OR5B2	390190	bcgsc.ca	37	11	58190414	58190414	+	Silent	SNP	C	C	T	rs73485945	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5B2	NM_001005566	exon1	c.G321A	p.T107T	.	.	147	7	78	0	C|0.981;T|0.019	71
OR5D14	219436	bcgsc.ca	37	11	55563602	55563602	+	Missense_Mutation	SNP	G	G	A	rs68042892	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5D14	NM_001004735	exon1	c.G571A	p.G191S	.	.	372	15	180	1	G|0.896;A|0.104	70
OR5D14	219436	bcgsc.ca	37	11	55563738	55563738	+	Missense_Mutation	SNP	G	G	A	rs67863827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5D14	NM_001004735	exon1	c.G707A	p.R236H	.	.	293	18	131	0	G|0.907;A|0.093	70
OR5D16	390144	bcgsc.ca	37	11	55606693	55606693	+	Missense_Mutation	SNP	G	G	A	rs6591700	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5D16	NM_001005496	exon1	c.G466A	p.A156T	.	.	273	14	94	0	G|0.841;A|0.159	73
OR5H1	26341	bcgsc.ca	37	3	97852229	97852229	+	Missense_Mutation	SNP	T	T	A	rs9849637	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H1	NM_001005338	exon1	c.T688A	p.S230T	.	.	614	28	252	1	T|0.778;A|0.222	136
OR5H15	403274	bcgsc.ca	37	3	97887970	97887970	+	Silent	SNP	C	C	A	rs72933946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H15	NM_001005515	exon1	c.C427A	p.R143R	.	.	898	29	355	1	C|0.965;A|0.035	92
OR5H15	403274	bcgsc.ca	37	3	97888337	97888337	+	Missense_Mutation	SNP	C	C	T	rs13082608	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H15	NM_001005515	exon1	c.C794T	p.P265L	.	.	327	16	154	1	C|0.771;T|0.229	92
OR5H2	79310	bcgsc.ca	37	3	98002576	98002576	+	Missense_Mutation	SNP	T	T	C	rs72934925	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H2	NM_001005482	exon1	c.T845C	p.F282S	.	.	239	7	83	0	T|0.993;C|0.007	71
OR5H2	79310	bcgsc.ca	37	3	98002587	98002587	+	Missense_Mutation	SNP	A	A	G	rs16839611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H2	NM_001005482	exon1	c.A856G	p.I286V	.	.	216	12	79	0	A|0.567;G|0.433	71
OR5H6	79295	bcgsc.ca	37	3	97983231	97983231	+	Missense_Mutation	SNP	C	C	T	rs113835025	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.C103T	p.H35Y	.	.	493	15	173	0	C|0.969;T|0.031	137
OR5H6	79295	bcgsc.ca	37	3	97983254	97983254	+	Silent	SNP	G	G	C	rs141607315	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.G126C	p.P42P	.	.	572	20	191	0	A|0.000;C|0.023;G|0.977	137
OR5H6	79295	bcgsc.ca	37	3	97983377	97983377	+	Silent	SNP	C	C	T	rs113391387	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.C249T	p.A83A	.	.	1070	53	346	0	C|0.957;T|0.043	137
OR5H6	79295	bcgsc.ca	37	3	97983664	97983664	+	Missense_Mutation	SNP	C	C	T	rs16846784	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.C536T	p.S179L	.	.	450	16	230	0	C|0.923;T|0.077	137
OR5H6	79295	bcgsc.ca	37	3	97983699	97983699	+	Missense_Mutation	SNP	C	C	A	rs58475490	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.C571A	p.Q191K	.	.	565	23	255	0	C|0.934;A|0.066	137
OR5H6	79295	bcgsc.ca	37	3	97983723	97983723	+	Missense_Mutation	SNP	C	C	T	rs112709839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.C595T	p.P199S	.	.	595	22	291	1	C|0.979;T|0.021	137
OR5H6	79295	hgsc.bcm.edu;bcgsc.ca	37	3	97983173	97983173	+	Silent	SNP	G	G	A	rs74600825	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.G45A	p.E15E	.	.	347	14	145	0	G|0.977;A|0.023	137
OR5H6	79295	hgsc.bcm.edu;bcgsc.ca	37	3	97983399	97983399	+	Missense_Mutation	SNP	T	T	C	rs113206717	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.T271C	p.S91P	.	.	950	55	317	0	T|0.978;C|0.022	137
OR5H6	79295	hgsc.bcm.edu;bcgsc.ca	37	3	97983401	97983401	+	Silent	SNP	C	C	T	rs113782472	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5H6	NM_001005479	exon1	c.C273T	p.S91S	.	.	928	52	313	0	C|0.978;T|0.022	137
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944427	55944427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5J2	NM_001005492	exon1	c.G334T	p.G112C	.	.	460	117	168	0	.	115
OR5K1	26339	bcgsc.ca	37	3	98189077	98189077	+	Silent	SNP	C	C	T	rs74372753	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K1	NM_001004736	exon1	c.C657T	p.L219L	.	.	501	32	203	1	C|0.982;T|0.018	135
OR5K1	26339	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98188606	98188606	+	Missense_Mutation	SNP	T	T	G	rs76190074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K1	NM_001004736	exon1	c.T186G	p.F62L	.	.	476	46	214	0	T|0.974;G|0.026	135
OR5K3	403277	bcgsc.ca	37	3	98109709	98109709	+	Missense_Mutation	SNP	T	T	C	rs58422508	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K3	NM_001005516	exon1	c.T200C	p.V67A	.	.	466	17	149	0	T|0.946;C|0.054	68
OR5K3	403277	bcgsc.ca	37	3	98109873	98109873	+	Missense_Mutation	SNP	T	T	C	rs57067643	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K3	NM_001005516	exon1	c.T364C	p.C122R	.	.	350	18	149	0	T|0.946;C|0.054	68
OR5K3	403277	hgsc.bcm.edu;bcgsc.ca	37	3	98110038	98110038	+	Missense_Mutation	SNP	T	T	C	rs73854830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K3	NM_001005516	exon1	c.T529C	p.F177L	.	.	336	15	103	0	T|0.946;C|0.054	68
OR5K4	403278	bcgsc.ca	37	3	98073207	98073207	+	Silent	SNP	G	G	A	rs76602063	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K4	NM_001005517	exon1	c.G510A	p.R170R	.	.	335	13	151	0	G|0.976;A|0.024	68
OR5K4	403278	hgsc.bcm.edu;bcgsc.ca	37	3	98072715	98072715	+	Missense_Mutation	SNP	C	C	A	rs77559509	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5K4	NM_001005517	exon1	c.C18A	p.H6Q	.	.	279	12	108	0	C|0.976;A|0.024	68
OR5L1	219437	bcgsc.ca	37	11	55579102	55579102	+	Missense_Mutation	SNP	C	C	T	rs34961497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5L1	NM_001004738	exon1	c.C160T	p.R54W	.	.	303	16	138	0	C|0.907;T|0.093	73
OR5L1	219437	bcgsc.ca	37	11	55579419	55579419	+	Silent	SNP	T	T	C	rs34948392	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5L1	NM_001004738	exon1	c.T477C	p.H159H	.	.	783	26	337	2	T|0.896;C|0.104	73
OR5L2	26338	bcgsc.ca	37	11	55594869	55594869	+	Missense_Mutation	SNP	G	G	A	rs56711116	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5L2	NM_001004739	exon1	c.G175A	p.V59M	.	.	334	14	143	1	G|0.901;A|0.099	69
OR5L2	26338	bcgsc.ca	37	11	55595081	55595081	+	Silent	SNP	C	C	T	rs7102394	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5L2	NM_001004739	exon1	c.C387T	p.P129P	.	.	388	17	162	0	C|0.845;T|0.155	69
OR5L2	26338	bcgsc.ca	37	11	55595116	55595116	+	Missense_Mutation	SNP	G	G	C	rs75822385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5L2	NM_001004739	exon1	c.G422C	p.R141P	.	.	542	19	210	0	A|0.002;C|0.068;G|0.929	69
OR5L2	26338	bcgsc.ca	37	11	55595324	55595324	+	Silent	SNP	C	C	T	rs7102663	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5L2	NM_001004739	exon1	c.C630T	p.T210T	.	.	340	15	129	0	C|0.840;T|0.160	69
OR5P2	120065	bcgsc.ca	37	11	7817665	7817665	+	Silent	SNP	T	T	C	rs72484720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5P2	NM_153444	exon1	c.A825G	p.T275T	.	.	217	10	108	0	T|0.738;C|0.262	496
OR5P2	120065	bcgsc.ca	37	11	7817852	7817852	+	Missense_Mutation	SNP	C	C	G	rs76615008	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5P2	NM_153444	exon1	c.G638C	p.C213S	.	.	144	10	74	0	C|0.738;G|0.262	496
OR5P2	120065	bcgsc.ca	37	11	7817856	7817856	+	Missense_Mutation	SNP	C	C	T	rs78460198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5P2	NM_153444	exon1	c.G634A	p.V212I	.	.	144	10	75	0	C|0.738;T|0.262	496
OR5P2	120065	bcgsc.ca	37	11	7818056	7818056	+	Missense_Mutation	SNP	T	T	C	rs73406604	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5P2	NM_153444	exon1	c.A434G	p.Y145C	.	.	59	4	29	0	T|0.737;C|0.263	496
OR5P2	120065	bcgsc.ca	37	11	7818190	7818190	+	Silent	SNP	C	C	T	rs73406607	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5P2	NM_153444	exon1	c.G300A	p.A100A	.	.	52	4	41	0	C|0.738;T|0.262	496
OR5R1	219479	ucsc.edu;bcgsc.ca	37	11	56185159	56185159	+	Missense_Mutation	SNP	A	A	G	rs7930678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5R1	NM_001004744	exon1	c.T550C	p.F184L	.	.	142	17	90	1	A|0.676;G|0.324	70
OR5W2	390148	bcgsc.ca	37	11	55681336	55681336	+	Silent	SNP	G	G	A	rs11231529	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR5W2	NM_001001960	exon1	c.C723T	p.C241C	.	.	166	11	93	0	G|0.677;A|0.323	70
OR6B1	135946	bcgsc.ca	37	7	143701224	143701224	+	Silent	SNP	C	C	T	rs61736970		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6B1	NM_001005281	exon1	c.C135T	p.I45I	.	.	350	16	132	0	C|0.990;T|0.010	91
OR6B2	389090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240969039	240969039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001005853	exon1	c.T808A	p.S270T	.	.	185	58	73	0	.	.
OR6B3	150681	bcgsc.ca	37	2	240984833	240984833	+	Silent	SNP	C	C	G	rs13389099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6B3	NM_173351	exon1	c.G657C	p.A219A	.	.	256	17	125	1	C|0.751;G|0.249	68
OR6C4	341418	bcgsc.ca	37	12	55945219	55945219	+	Missense_Mutation	SNP	C	C	T	rs58154171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6C4	NM_001005494	exon1	c.C209T	p.S70F	.	.	286	10	105	0	C|0.982;T|0.018	68
OR6C4	341418	bcgsc.ca	37	12	55945258	55945258	+	Missense_Mutation	SNP	T	T	C	rs11835716	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6C4	NM_001005494	exon1	c.T248C	p.M83T	.	.	236	7	87	0	T|0.905;C|0.095	68
OR6C4	341418	bcgsc.ca	37	12	55945265	55945265	+	Silent	SNP	A	A	G	rs74093226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6C4	NM_001005494	exon1	c.A255G	p.T85T	.	.	221	6	87	0	A|0.951;G|0.049	68
OR6F1	343169	ucsc.edu;bcgsc.ca	37	1	247875689	247875689	+	Silent	SNP	A	A	G	rs7512807	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6F1	NM_001005286	exon1	c.T369C	p.C123C	.	.	65	6	37	0	A|0.852;G|0.148	68
OR6K6	128371	bcgsc.ca	37	1	158724722	158724722	+	Missense_Mutation	SNP	G	G	C	rs16840974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.G117C	p.E39D	.	.	322	12	110	0	G|0.966;C|0.034	69
OR6K6	128371	bcgsc.ca	37	1	158724750	158724750	+	Missense_Mutation	SNP	C	C	T	rs16840976	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.C145T	p.H49Y	.	.	348	17	129	0	C|0.913;T|0.087	69
OR6K6	128371	bcgsc.ca	37	1	158724794	158724794	+	Silent	SNP	C	C	T	rs57046052	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.C189T	p.Y63Y	.	.	344	10	131	0	C|0.987;T|0.013	69
OR6K6	128371	bcgsc.ca	37	1	158724844	158724844	+	Missense_Mutation	SNP	G	G	A	rs16840980	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.G239A	p.G80D	.	.	278	19	99	0	G|0.913;A|0.087	69
OR6K6	128371	bcgsc.ca	37	1	158724988	158724988	+	Missense_Mutation	SNP	A	A	G	rs74122455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.A383G	p.Q128R	.	.	125	5	39	0	A|0.927;G|0.073	69
OR6K6	128371	bcgsc.ca	37	1	158725345	158725345	+	Missense_Mutation	SNP	G	G	A	rs16841038	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.G740A	p.R247Q	.	.	688	26	207	0	G|0.912;A|0.088	69
OR6K6	128371	bcgsc.ca	37	1	158725564	158725564	+	Missense_Mutation	SNP	A	A	G	rs16841045	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6K6	NM_001005184	exon1	c.A959G	p.K320R	.	.	369	24	143	0	A|0.914;G|0.086	69
OR6N2	81442	bcgsc.ca	37	1	158746678	158746678	+	Missense_Mutation	SNP	T	T	C	rs41273541	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6N2	NM_001005278	exon1	c.A748G	p.I250V	.	.	308	12	129	0	T|0.900;C|0.100	68
OR6V1	346517	bcgsc.ca	37	7	142749695	142749695	+	Silent	SNP	C	C	T	rs61997195	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6V1	NM_001001667	exon1	c.C258T	p.P86P	.	.	297	11	105	0	C|0.955;T|0.045	23
OR6V1	346517	bcgsc.ca	37	7	142749953	142749953	+	Silent	SNP	C	C	T	rs11975892	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6V1	NM_001001667	exon1	c.C516T	p.I172I	.	.	259	10	128	0	C|0.708;T|0.292	23
OR6V1	346517	bcgsc.ca	37	7	142750243	142750243	+	Missense_Mutation	SNP	G	G	A	rs7791886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR6V1	NM_001001667	exon1	c.G806A	p.R269K	.	.	227	16	63	0	G|0.937;A|0.063	23
OR7A10	390892	hgsc.bcm.edu;bcgsc.ca	37	19	14952189	14952189	+	Silent	SNP	G	G	T	rs114596415	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7A10	NM_001005190	exon1	c.C501A	p.P167P	.	.	138	12	75	0	G|0.980;T|0.020	68
OR7A17	26333	bcgsc.ca	37	19	14991643	14991643	+	Silent	SNP	G	G	A	rs10401818	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7A17	NM_030901	exon1	c.C525T	p.P175P	.	.	188	20	85	0	G|0.709;A|0.291	68
OR7C1	26664	bcgsc.ca	37	19	14910210	14910210	+	Missense_Mutation	SNP	C	C	G	rs73004304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7C1	NM_198944	exon1	c.G739C	p.V247L	.	.	204	9	69	0	C|0.801;G|0.199	70
OR7C1	26664	bcgsc.ca	37	19	14910438	14910438	+	Missense_Mutation	SNP	C	C	T	rs10415312	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7C1	NM_198944	exon1	c.G511A	p.E171K	.	.	197	15	84	0	C|0.056;T|0.944	70
OR7C1	26664	bcgsc.ca	37	19	14910613	14910613	+	Silent	SNP	A	A	G	rs60788745	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7C1	NM_198944	exon1	c.T336C	p.N112N	.	.	177	10	80	0	A|0.974;G|0.026	70
OR7C1	26664	bcgsc.ca	37	19	14910654	14910654	+	Missense_Mutation	SNP	T	T	C	rs17230134	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7C1	NM_198944	exon1	c.A295G	p.S99G	.	.	208	20	82	0	T|0.783;C|0.217	70
OR7C1	26664	ucsc.edu;bcgsc.ca	37	19	14910573	14910573	+	Missense_Mutation	SNP	C	C	T	rs10415562	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7C1	NM_198944	exon1	c.G376A	p.V126I	.	.	185	21	83	0	C|0.206;T|0.794	70
OR7C2	26658	bcgsc.ca	37	19	15052665	15052665	+	Missense_Mutation	SNP	G	G	A	rs11883178	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR7C2	NM_012377	exon1	c.G365A	p.R122H	.	.	215	8	71	0	G|0.961;A|0.039	71
OR8B4	283162	bcgsc.ca	37	11	124294703	124294703	+	Missense_Mutation	SNP	T	T	C	rs10750270	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR8B4	NM_001005196	exon1	c.A65G	p.E22G	.	.	63	6	34	0	T|0.675;C|0.325	69
OR8D2	283160	bcgsc.ca	37	11	124189306	124189306	+	Missense_Mutation	SNP	G	G	A	rs2466620	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR8D2	NM_001002918	exon1	c.C788T	p.P263L	.	.	152	12	85	0	G|0.761;A|0.239	113
OR8D4	338662	bcgsc.ca	37	11	123777498	123777498	+	Silent	SNP	C	C	T	rs10893102	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR8D4	NM_001005197	exon1	c.C360T	p.C120C	.	.	152	8	96	1	C|0.748;T|0.252	69
OR8D4	338662	bcgsc.ca	37	11	123777736	123777736	+	Missense_Mutation	SNP	T	T	C	rs10790610	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR8D4	NM_001005197	exon1	c.T598C	p.F200L	.	.	296	8	115	0	T|0.739;C|0.261	69
OR8J1	219477	bcgsc.ca	37	11	56128081	56128081	+	Missense_Mutation	SNP	A	A	G	rs10896290	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR8J1	NM_001005205	exon1	c.A359G	p.Y120C	.	.	269	17	165	0	A|0.712;G|0.288	70
OR9G9	504191	bcgsc.ca	37	11	56468155	56468155	+	Missense_Mutation	SNP	T	T	G	rs11228732	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001013358	exon1	c.T292G	p.C98G	.	.	353	24	134	0	T|0.749;G|0.251	.
OR9G9	504191	bcgsc.ca	37	11	56468638	56468638	+	Missense_Mutation	SNP	G	G	T	rs7121276	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001013358	exon1	c.G775T	p.A259S	.	.	219	21	87	1	G|0.877;T|0.123	.
OR9K2	441639	bcgsc.ca	37	12	55523685	55523685	+	Missense_Mutation	SNP	C	C	T	rs12303066	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR9K2	NM_001005243	exon1	c.C133T	p.R45C	.	.	484	14	119	0	C|0.679;T|0.321	69
OR9K2	441639	bcgsc.ca	37	12	55523860	55523860	+	Missense_Mutation	SNP	A	A	C	rs7305779	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR9K2	NM_001005243	exon1	c.A308C	p.E103A	.	.	163	6	69	0	A|0.678;C|0.322	69
OR9Q2	219957	bcgsc.ca	37	11	57958796	57958796	+	Silent	SNP	C	C	T	rs73470064	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OR9Q2	NM_001005283	exon1	c.C834T	p.Y278Y	.	.	137	9	96	0	C|0.945;T|0.055	115
ORC1	4998	bcgsc.ca	37	1	52854961	52854961	+	Missense_Mutation	SNP	G	G	A	rs3087476	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ORC1	NM_004153	exon7	c.C1115T	p.A372V	.	.	274	12	93	0	G|0.984;A|0.016	206
ORC3	23595	bcgsc.ca	37	6	88315689	88315689	+	Missense_Mutation	SNP	A	A	G	rs2307371	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ORC3	NM_181837	exon5	c.A377G	p.Q126R	.	.	308	14	108	0	A|0.984;G|0.016	206
OSBP2	23762	bcgsc.ca	37	22	31266546	31266546	+	Silent	SNP	T	T	C	rs2301816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSBP2	NM_030758	exon3	c.T984C	p.A328A	.	.	101	6	33	0	T|0.307;C|0.693	114
OSBP2	23762	ucsc.edu	37	22	31289923	31289923	+	Silent	SNP	C	C	T	rs34929946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSBP2	NM_030758	exon12	c.C2310T	p.D770D	.	.	55	5	25	0	C|0.960;T|0.040	114
OSBPL10	114884	bcgsc.ca	37	3	31712393	31712393	+	Silent	SNP	C	C	T	rs3749405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSBPL10	NM_017784	exon9	c.G1809A	p.P603P	.	.	161	6	44	0	C|0.470;T|0.530	69
OSBPL1A	114876	bcgsc.ca	37	18	21751386	21751386	+	Missense_Mutation	SNP	T	T	C	rs114976493	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSBPL1A	NM_080597	exon23	c.A2278G	p.I760V	.	.	505	17	269	0	T|0.994;C|0.006	94
OSBPL7	114881	bcgsc.ca	37	17	45885756	45885756	+	Silent	SNP	C	C	T	rs9911983	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSBPL7	NM_145798	exon23	c.G2430A	p.T810T	.	.	137	6	76	0	C|0.449;T|0.551	68
OSBPL9	114883	hgsc.bcm.edu;bcgsc.ca	37	1	52251499	52251499	+	Missense_Mutation	SNP	T	T	A	rs149501959	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSBPL9	NM_148909	exon21	c.T1879A	p.S627T	.	.	145	9	81	0	T|0.998;A|0.002	68
OSCP1	127700	bcgsc.ca	37	1	36886117	36886117	+	Missense_Mutation	SNP	C	C	T	rs2275477	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSCP1	NM_145047	exon8	c.G919A	p.G307R	.	.	180	16	79	0	C|0.755;T|0.245	4
OSTM1	28962	hgsc.bcm.edu;bcgsc.ca	37	6	108370473	108370473	+	Silent	SNP	T	T	C	rs146289365		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OSTM1	NM_014028	exon5	c.A933G	p.K311K	.	.	162	8	68	0	T|1.000;C|0.000	68
OTOL1	131149	bcgsc.ca	37	3	161221262	161221262	+	Silent	SNP	T	T	A	rs113998122	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080440	exon4	c.T966A	p.T322T	.	.	83	5	38	0	T|0.990;A|0.010	.
OTOP1	133060	bcgsc.ca	37	4	4199217	4199217	+	Silent	SNP	G	G	A	rs58092279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OTOP1	NM_177998	exon5	c.C1344T	p.H448H	.	.	169	8	52	0	G|0.978;A|0.022	92
OTOP2	92736	bcgsc.ca	37	17	72926879	72926879	+	Silent	SNP	T	T	C	rs16967162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OTOP2	NM_178160	exon6	c.T1149C	p.S383S	.	.	146	10	51	0	T|0.925;C|0.075	134
OTP	23440	bcgsc.ca	37	5	76934363	76934363	+	Silent	SNP	A	A	G	rs35976259	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OTP	NM_032109	exon1	c.T12C	p.H4H	.	.	635	20	286	2	A|0.968;G|0.032	69
OTUD7B	56957	bcgsc.ca	37	1	149920888	149920888	+	Silent	SNP	G	G	A	rs16838449	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OTUD7B	NM_020205	exon10	c.C1221T	p.D407D	.	.	168	9	38	0	G|0.983;A|0.017	502
OTUD7B	56957	ucsc.edu;bcgsc.ca	37	1	149916185	149916185	+	Silent	SNP	C	C	A	rs56929499	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OTUD7B	NM_020205	exon12	c.G2103T	p.P701P	.	.	76	7	29	0	C|0.986;A|0.014	502
OVCH1	341350	bcgsc.ca	37	12	29630386	29630386	+	Silent	SNP	A	A	G	rs16934306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OVCH1	NM_183378	exon11	c.T1134C	p.P378P	.	.	117	7	73	0	A|0.886;G|0.114	210
OVCH2	341277	bcgsc.ca	37	11	7713176	7713176	+	Silent	SNP	G	G	A	rs74054133	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OVCH2	NM_198185	exon14	c.C1464T	p.D488D	.	.	109	6	30	0	G|0.912;A|0.088	68
OVGP1	5016	bcgsc.ca	37	1	111957097	111957097	+	Missense_Mutation	SNP	C	C	G	rs7825	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OVGP1	NM_002557	exon11	c.G2026C	p.E676Q	.	.	147	7	57	0	C|0.415;G|0.585	135
OVGP1	5016	bcgsc.ca	37	1	111957688	111957688	+	Missense_Mutation	SNP	T	T	C	rs3767607	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OVGP1	NM_002557	exon11	c.A1435G	p.M479V	.	.	205	9	87	0	T|0.892;C|0.108	135
OVGP1	5016	bcgsc.ca	37	1	111962256	111962256	+	Missense_Mutation	SNP	G	G	T	rs17027633	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OVGP1	NM_002557	exon9	c.C996A	p.D332E	.	.	138	9	61	1	G|0.944;T|0.056	135
OVGP1	5016	bcgsc.ca	37	1	111964262	111964262	+	Silent	SNP	G	G	A	rs2275794	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OVGP1	NM_002557	exon7	c.C642T	p.D214D	.	.	94	5	47	0	G|0.948;A|0.052	135
OXA1L	5018	bcgsc.ca	37	14	23240666	23240666	+	Missense_Mutation	SNP	C	C	G	rs111433674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OXA1L	NM_005015	exon10	c.C1387G	p.H463D	.	.	140	9	67	0	C|0.500;G|0.500	204
OXER1	165140	bcgsc.ca	37	2	42990336	42990336	+	Silent	SNP	T	T	G	rs1992286	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OXER1	NM_148962	exon1	c.A984C	p.R328R	.	.	120	12	61	0	G|0.690;N|0.002	500
OXER1	165140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	42991312	42991312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OXER1	NM_148962	exon1	c.G8T	p.C3F	.	.	135	39	45	0	.	500
OXGR1	27199	bcgsc.ca	37	13	97639827	97639827	+	Silent	SNP	T	T	G	rs9300380	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OXGR1	NM_080818	exon4	c.A187C	p.R63R	.	.	166	7	65	0	T|0.939;G|0.061	70
OXNAD1	92106	bcgsc.ca	37	3	16327909	16327909	+	Missense_Mutation	SNP	C	C	T	rs6777976	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	OXNAD1	NM_138381	exon5	c.C244T	p.R82C	.	.	405	11	119	0	C|0.824;T|0.176	69
P2RX4	5025	ucsc.edu;bcgsc.ca	37	12	121660787	121660787	+	Silent	SNP	T	T	C	rs25643	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	P2RX4	NM_001256796	exon6	c.T513C	p.S171S	.	.	128	13	48	0	C|0.421;N|0.000;T|0.579	68
P2RY12	64805	bcgsc.ca	37	3	151055645	151055645	+	Missense_Mutation	SNP	T	T	C	rs16846673	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	P2RY12	NM_022788	exon3	c.A989G	p.E330G	.	.	231	13	74	0	T|0.973;C|0.027	501
P2RY4	5030	bcgsc.ca	37	X	69479258	69479258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	P2RY4	NM_002565	exon1	c.T217C	p.Y73H	.	.	65	4	33	0	.	540
PABPC1L	80336	bcgsc.ca	37	20	43566787	43566787	+	Silent	SNP	A	A	G	rs11780	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PABPC1L	NM_001124756	exon13	c.A1731G	p.S577S	.	.	104	8	28	0	A|0.569;G|0.428	47
PABPC1L	80336	ucsc.edu;bcgsc.ca	37	20	43561051	43561051	+	Silent	SNP	A	A	G	rs41282038	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PABPC1L	NM_001124756	exon9	c.A1308G	p.T436T	.	.	121	11	31	0	A|0.975;G|0.025	47
PABPC4L	132430	bcgsc.ca	37	4	135121066	135121066	+	Missense_Mutation	SNP	T	T	G	rs11099273	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001114734	exon2	c.A1283C	p.H428P	.	.	102	10	34	0	T|0.365;G|0.635	.
PABPC4L	132430	bcgsc.ca	37	4	135121368	135121368	+	Silent	SNP	G	G	T	rs2044116	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001114734	exon2	c.C981A	p.V327V	.	.	101	10	63	0	G|0.347;T|0.653	.
PABPC4L	132430	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	135121601	135121601	+	Missense_Mutation	SNP	C	C	T	rs10009368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001114734	exon2	c.G748A	p.V250I	.	.	335	34	127	0	C|0.348;T|0.652	.
PACRG	135138	bcgsc.ca	37	6	163736016	163736016	+	Silent	SNP	C	C	T	rs60454188	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PACRG	NM_152410	exon7	c.C888T	p.N296N	.	.	133	5	71	0	C|0.981;T|0.019	69
PACS2	23241	bcgsc.ca	37	14	105833679	105833679	+	Missense_Mutation	SNP	A	A	G	rs8010888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PACS2	NM_001100913	exon5	c.A553G	p.T185A	.	.	181	10	69	0	A|0.862;G|0.138	69
PACS2	23241	bcgsc.ca	37	14	105843179	105843179	+	Silent	SNP	C	C	G	rs4074004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PACS2	NM_001100913	exon9	c.C876G	p.T292T	.	.	99	6	44	0	C|0.677;G|0.323	69
PACS2	23241	bcgsc.ca	37	14	105848891	105848891	+	Silent	SNP	T	T	C	rs4076933	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PACS2	NM_001100913	exon14	c.T1491C	p.L497L	.	.	110	6	33	0	T|0.861;C|0.139	69
PADI2	11240	bcgsc.ca	37	1	17396592	17396592	+	Silent	SNP	G	G	A	rs11581590	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PADI2	NM_007365	exon15	c.C1755T	p.F585F	.	.	100	6	36	0	G|0.962;A|0.038	208
PADI3	51702	bcgsc.ca	37	1	17609448	17609448	+	Silent	SNP	G	G	T	rs2293920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PADI3	NM_016233	exon16	c.G1869T	p.P623P	.	.	128	8	46	0	G|0.602;T|0.398	132
PADI4	23569	bcgsc.ca	37	1	17657616	17657616	+	Missense_Mutation	SNP	T	T	C	rs11203367	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PADI4	NM_012387	exon2	c.T245C	p.V82A	.	.	111	5	43	0	T|0.442;C|0.558	70
PAF1	54623	bcgsc.ca	37	19	39880011	39880011	+	Silent	SNP	G	G	A	rs2074852	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAF1	NM_019088	exon6	c.C372T	p.H124H	.	.	229	10	61	0	A|0.060;C|0.007	69
PAG1	55824	bcgsc.ca	37	8	81897200	81897200	+	Silent	SNP	C	C	T	rs7006101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018440	exon7	c.G687A	p.S229S	.	.	862	17	162	0	C|0.853;T|0.147	.
PAH	5053	bcgsc.ca	37	12	103234215	103234215	+	Silent	SNP	A	A	G	rs59326968	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAH	NM_000277	exon12	c.T1278C	p.N426N	.	.	206	9	79	0	A|0.951;G|0.049	72
PAIP2B	400961	bcgsc.ca	37	2	71417134	71417134	+	Silent	SNP	C	C	T	rs357776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAIP2B	NM_020459	exon3	c.G156A	p.Q52Q	.	.	84	6	35	0	C|0.699;T|0.301	46
PAIP2B	400961	bcgsc.ca	37	2	71429687	71429687	+	Silent	SNP	C	C	G	rs13001756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAIP2B	NM_020459	exon2	c.G33C	p.P11P	.	.	526	25	179	0	C|0.934;G|0.066	46
PAK1IP1	55003	bcgsc.ca	37	6	10702690	10702690	+	Silent	SNP	A	A	G	rs57403715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAK1IP1	NM_017906	exon3	c.A336G	p.K112K	.	.	212	8	79	0	A|0.992;G|0.008	68
PAK2	5062	bcgsc.ca	37	3	196544948	196544948	+	Silent	SNP	T	T	C	rs56172538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAK2	NM_002577	exon12	c.T1074C	p.F358F	.	.	236	10	50	0	T|0.896;C|0.104	957
PAK6	56924	bcgsc.ca	37	15	40558064	40558064	+	Missense_Mutation	SNP	A	A	G	rs2412504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAK6	NM_001128629	exon4	c.A226G	p.M76V	.	.	197	8	43	0	A|0.849;G|0.151	996
PALLD	23022	bcgsc.ca	37	4	169611765	169611765	+	Silent	SNP	C	C	T	rs17054482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PALLD	NM_001166108	exon7	c.C1347T	p.N449N	.	.	152	6	53	0	C|0.962;T|0.038	94
PALM3	342979	bcgsc.ca	37	19	14165121	14165121	+	Missense_Mutation	SNP	C	C	T	rs11880169	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PALM3	NM_001145028	exon6	c.G1318A	p.A440T	.	.	797	36	259	0	C|0.957;T|0.043	24
PALMD	54873	bcgsc.ca	37	1	100154467	100154467	+	Silent	SNP	G	G	A	rs6678252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PALMD	NM_017734	exon7	c.G651A	p.V217V	.	.	159	7	64	0	G|0.903;A|0.097	71
PAMR1	25891	bcgsc.ca	37	11	35492351	35492351	+	Silent	SNP	G	G	A	rs16927500	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAMR1	NM_001001991	exon5	c.C510T	p.S170S	.	.	71	5	41	0	G|0.906;A|0.094	70
PANX1	24145	bcgsc.ca	37	11	93913392	93913392	+	Missense_Mutation	SNP	G	G	T	rs74549886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PANX1	NM_015368	exon4	c.G1170T	p.E390D	.	.	138	10	57	0	G|0.968;T|0.032	68
PANX1	24145	ucsc.edu;bcgsc.ca	37	11	93862493	93862493	+	Missense_Mutation	SNP	A	A	C	rs1138800	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PANX1	NM_015368	exon1	c.A15C	p.Q5H	.	.	81	9	30	0	A|0.289;C|0.711	68
PAPD7	11044	bcgsc.ca	37	5	6751227	6751227	+	Missense_Mutation	SNP	G	G	A	rs28381418	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAPD7	NM_001171805	exon11	c.G1186A	p.G396S	.	.	133	7	64	1	G|0.990;A|0.010	69
PAPLN	89932	ucsc.edu;bcgsc.ca	37	14	73719455	73719455	+	Missense_Mutation	SNP	A	A	C	rs17126331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAPLN	NM_173462	exon10	c.A985C	p.N329H	.	.	77	7	43	0	A|0.933;C|0.067	70
PAPOLB	56903	bcgsc.ca	37	7	4900165	4900165	+	Missense_Mutation	SNP	T	T	C	rs6964535	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAPOLB	NM_020144	exon1	c.A1277G	p.K426R	.	.	451	17	185	0	T|0.967;C|0.033	493
PAPSS1	9061	bcgsc.ca	37	4	108622384	108622384	+	Missense_Mutation	SNP	T	T	C	rs138492413	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAPSS1	NM_005443	exon2	c.A118G	p.R40G	.	.	180	6	48	0	T|1.000;G|0.000	94
PARD3B	117583	bcgsc.ca	37	2	205990353	205990353	+	Silent	SNP	C	C	T	rs2276676	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARD3B	NM_205863	exon10	c.C1326T	p.T442T	.	.	103	6	59	0	C|0.706;T|0.294	140
PARD3B	117583	bcgsc.ca	37	2	206305156	206305156	+	Missense_Mutation	SNP	C	C	T	rs10185378	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARD3B	NM_152526	exon19	c.C2618T	p.T873I	.	.	289	13	78	0	C|0.915;T|0.085	140
PARP15	165631	bcgsc.ca	37	3	122338637	122338637	+	Missense_Mutation	SNP	G	G	A	rs6793271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP15	NM_001113523	exon7	c.G1010A	p.R337K	.	.	230	7	102	0	G|0.903;A|0.097	524
PARP15	165631	bcgsc.ca	37	3	122354792	122354792	+	Missense_Mutation	SNP	G	G	A	rs12489170	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP15	NM_001113523	exon12	c.G1882A	p.G628R	.	.	145	5	63	0	G|0.823;A|0.177	524
PARP2	10038	bcgsc.ca	37	14	20823095	20823095	+	Silent	SNP	G	G	A	rs3093927	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP2	NM_005484	exon9	c.G930A	p.P310P	.	.	285	9	77	0	G|0.957;A|0.043	661
PARP3	10039	bcgsc.ca	37	3	51979185	51979185	+	Missense_Mutation	SNP	A	A	G	rs323870	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP3	NM_001003931	exon6	c.A827G	p.Q276R	.	.	202	8	63	0	A|0.964;G|0.036	660
PARP4	143	bcgsc.ca	37	13	25023936	25023936	+	Missense_Mutation	SNP	C	C	T	rs9581043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP4	NM_006437	exon25	c.G3034A	p.V1012I	.	.	417	18	191	0	C|0.848;T|0.152	94
PARP4	143	hgsc.bcm.edu	37	13	25021208	25021208	+	Silent	SNP	G	G	A	rs57834615	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP4	NM_006437	exon26	c.C3231T	p.S1077S	.	.	243	10	93	0	G|0.988;A|0.012	94
PARP6	56965	bcgsc.ca	37	15	72559134	72559134	+	Silent	SNP	G	G	A	rs35014122		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARP6	NM_020214	exon3	c.C33T	p.D11D	.	.	204	7	81	0	G|0.994;A|0.006	522
PARVA	55742	bcgsc.ca	37	11	12525925	12525925	+	Silent	SNP	C	C	T	rs11547363	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PARVA	NM_018222	exon6	c.C726T	p.R242R	.	.	296	21	129	0	C|0.846;T|0.154	93
PASD1	139135	bcgsc.ca	37	X	150791503	150791503	+	Silent	SNP	A	A	G	rs5924977	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PASD1	NM_173493	exon7	c.A513G	p.G171G	.	.	278	16	89	1	A|0.863;0|0.012	133
PASD1	139135	bcgsc.ca	37	X	150791512	150791512	+	Silent	SNP	C	C	T	rs5924978	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PASD1	NM_173493	exon7	c.C522T	p.C174C	.	.	271	9	84	0	C|0.878;0|0.003	133
PASD1	139135	bcgsc.ca	37	X	150840185	150840185	+	Silent	SNP	T	T	C	rs6627174	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PASD1	NM_173493	exon13	c.T1371C	p.G457G	.	.	134	12	41	0	0|0.003;C|0.270	133
PASK	23178	bcgsc.ca	37	2	242065781	242065781	+	Missense_Mutation	SNP	G	G	A	rs73112175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PASK	NM_015148	exon10	c.C2549T	p.T850M	.	.	118	5	35	0	G|0.972;A|0.028	536
PASK	23178	ucsc.edu;bcgsc.ca	37	2	242046785	242046785	+	Missense_Mutation	SNP	A	A	C	rs1131293	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PASK	NM_001252119	exon17	c.T3818G	p.F1273C	.	.	190	22	56	0	C|0.280;N|0.000	536
PATE3	100169851	hgsc.bcm.edu;bcgsc.ca	37	11	125659320	125659320	+	Missense_Mutation	SNP	C	C	A	rs1025165		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001129883	exon2	c.C89A	p.T30K	.	.	109	8	32	0	C|0.998;A|0.002	.
PAWR	5074	ucsc.edu	37	12	80014907	80014907	+	Missense_Mutation	SNP	T	T	C	rs78187003	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAWR	NM_002583	exon3	c.T597G	p.I199M	.	.	297	28	82	0	A|0.208;C|0.319;T|0.473	90
PAX2	5076	ucsc.edu	37	10	102568872	102568872	+	Silent	SNP	C	C	T	rs1800897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PAX2	NM_003987	exon8	c.C867T	p.N289N	.	.	50	5	13	0	C|0.862;T|0.138	90
PBLD	64081	bcgsc.ca	37	10	70066536	70066536	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PBLD	NM_022129	exon2	c.T66C	p.A22A	.	.	291	7	114	0	.	93
PBRM1	55193	bcgsc.ca	37	3	52668638	52668638	+	Silent	SNP	G	G	A	rs17052357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PBRM1	NM_018313	exon12	c.C1281T	p.P427P	.	.	297	11	150	0	G|0.876;A|0.124	575
PCBP4	57060	bcgsc.ca	37	3	51993427	51993427	+	Missense_Mutation	SNP	C	C	T	rs323872	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCBP4	NM_033008	exon9	c.G592A	p.G198S	.	.	126	10	40	0	C|0.941;T|0.059	226
PCDH1	5097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141243114	141243114	+	Missense_Mutation	SNP	C	C	T	rs3797055	bycluster;byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDH1	NM_032420	exon3	c.G2782A	p.E928K	.	.	412	137	158	1	C|1.000;T|0.000	95
PCDH15	65217	bcgsc.ca	37	10	55582905	55582905	+	Silent	SNP	G	G	T	rs10825114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDH15	NM_001142763	exon35	c.C4602A	p.P1534P	.	.	211	6	99	1	G|0.809;T|0.191	193
PCDH15	65217	bcgsc.ca	37	10	55955485	55955485	+	Silent	SNP	A	A	G	rs7921598	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDH15	NM_001142763	exon12	c.T1278C	p.T426T	.	.	133	9	72	0	A|0.756;G|0.244	193
PCDH7	5099	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	30724235	30724235	+	Silent	SNP	C	C	T	rs35941707	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDH7	NM_032457	exon1	c.C1191T	p.D397D	.	.	140	16	70	0	C|0.997;T|0.003	229
PCDHA10	56139	bcgsc.ca	37	5	140237337	140237337	+	Silent	SNP	C	C	G	rs7725388	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA10	NM_031859	exon1	c.C1704G	p.P568P	.	.	111	11	63	0	.	99
PCDHA10	56139	bcgsc.ca	37	5	140237387	140237387	+	Missense_Mutation	SNP	T	T	G	rs251364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA10	NM_031859	exon1	c.T1754G	p.V585G	.	.	186	18	90	1	T|0.383;G|0.617	99
PCDHA12	56137	hgsc.bcm.edu;bcgsc.ca	37	5	140257289	140257289	+	Silent	SNP	C	C	T	rs116613760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018903	exon1	c.C2232T	p.A744A	.	.	203	12	80	0	C|0.993;T|0.007	.
PCDHA1	56147	bcgsc.ca	37	5	140166734	140166734	+	Missense_Mutation	SNP	C	C	T	rs144952734		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA1	NM_031411	exon1	c.C859T	p.R287C	.	.	318	9	109	0	C|1.000;T|0.000	23
PCDHA9	9752	bcgsc.ca	37	5	140229086	140229086	+	Missense_Mutation	SNP	C	C	G	rs76413381		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA9	NM_031857	exon1	c.C1006G	p.L336V	.	.	468	17	123	0	.	138
PCDHA9	9752	bcgsc.ca	37	5	140229368	140229368	+	Missense_Mutation	SNP	G	G	C	rs251355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA9	NM_031857	exon1	c.G1288C	p.G430R	.	.	156	7	63	0	G|0.486;C|0.514	138
PCDHA9	9752	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	140228494	140228494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA9	NM_031857	exon1	c.G414T	p.K138N	.	.	356	18	177	0	.	138
PCDHA9	9752	ucsc.edu;bcgsc.ca	37	5	140228164	140228164	+	Missense_Mutation	SNP	C	C	A	rs251353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHA9	NM_031857	exon1	c.C84A	p.S28R	.	.	116	15	34	1	C|0.554;A|0.446	138
PCDHAC1	56135	bcgsc.ca	37	5	140307002	140307002	+	Silent	SNP	G	G	A	rs74597681	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHAC1	NM_031882	exon1	c.G525A	p.S175S	.	.	62	6	30	0	G|0.969;A|0.031	28
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140574266	140574266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB10	NM_018930	exon1	c.G2141T	p.R714L	.	.	51	19	24	0	.	92
PCDHB12	56124	bcgsc.ca	37	5	140589414	140589414	+	Missense_Mutation	SNP	T	T	C	rs61729948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB12	NM_018932	exon1	c.T935C	p.I312T	.	.	152	6	82	0	T|0.997;C|0.003	93
PCDHB1	29930	bcgsc.ca	37	5	140433080	140433080	+	Silent	SNP	G	G	A	rs36090285	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB1	NM_013340	exon1	c.G2025A	p.Q675Q	.	.	224	8	148	0	G|0.995;A|0.005	90
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140594145	140594145	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB13	NM_018933	exon1	c.G450T	p.G150G	.	.	599	203	318	0	.	93
PCDHB15	56121	ucsc.edu	37	5	140627509	140627509	+	Silent	SNP	A	A	G	rs80263204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB15	NM_018935	exon1	c.A2363G	p.X788X	.	.	245	24	91	0	A|0.966;G|0.034	156
PCDHB16	57717	bcgsc.ca	37	5	140562236	140562236	+	Silent	SNP	C	C	T	rs141220052	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB16	NM_020957	exon1	c.C102T	p.S34S	.	.	275	8	117	0	C|0.994;T|0.006	92
PCDHB5	26167	hgsc.bcm.edu	37	5	140516336	140516336	+	Silent	SNP	C	C	T	rs61741623		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB5	NM_015669	exon1	c.C1320T	p.V440V	.	.	185	9	106	0	C|0.986;T|0.014	95
PCDHB8	56128	bcgsc.ca	37	5	140557636	140557636	+	Silent	SNP	C	C	T	rs143203275	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHB8	NM_019120	exon1	c.C21T	p.L7L	.	.	580	22	218	0	C|0.992;T|0.008	131
PCDHGA11	56105	bcgsc.ca	37	5	140803065	140803065	+	Silent	SNP	G	G	A	rs17097211	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032091	exon1	c.G2271A	p.E757E	.	.	186	8	55	0	G|0.993;A|0.007	.
PCDHGA3	56112	bcgsc.ca	37	5	140724060	140724060	+	Missense_Mutation	SNP	A	A	C	rs11575948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHGA3	NM_032011	exon1	c.A460C	p.I154L	.	.	133	7	39	0	A|0.880;C|0.120	68
PCDHGA4	56111	bcgsc.ca	37	5	140736474	140736474	+	Silent	SNP	T	T	G	rs17097226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018917	exon1	c.T1707G	p.T569T	.	.	163	8	63	0	T|0.882;G|0.118	.
PCDHGA5	56110	bcgsc.ca	37	5	140744395	140744395	+	Silent	SNP	T	T	C	rs57308563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHGA5	NM_032054	exon1	c.T498C	p.S166S	.	.	123	6	59	1	T|0.882;C|0.118	35
PCDHGA7	56108	bcgsc.ca	37	5	140762763	140762763	+	Silent	SNP	T	T	C	rs7704696	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032087	exon1	c.T297C	p.S99S	.	.	137	10	69	0	T|0.910;C|0.090	.
PCDHGA7	56108	bcgsc.ca	37	5	140762919	140762919	+	Silent	SNP	G	G	T	rs115561507	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032087	exon1	c.G453T	p.R151R	.	.	232	7	144	0	G|0.994;T|0.006	.
PCDHGA7	56108	bcgsc.ca	37	5	140764842	140764842	+	Silent	SNP	A	A	G	rs115152670	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032087	exon1	c.A2376G	p.L792L	.	.	264	8	71	0	A|0.993;G|0.007	.
PCDHGA7	56108	hgsc.bcm.edu;bcgsc.ca	37	5	140764269	140764269	+	Silent	SNP	C	C	T	rs115492697	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032087	exon1	c.C1803T	p.N601N	.	.	161	10	60	0	C|0.993;T|0.007	.
PCDHGA9	56107	bcgsc.ca	37	5	140784892	140784892	+	Missense_Mutation	SNP	G	G	C	rs17097274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032089	exon1	c.G2373C	p.L791F	.	.	240	16	100	0	G|0.995;C|0.005	.
PCDHGB1	56104	ucsc.edu;bcgsc.ca	37	5	140731408	140731408	+	Silent	SNP	A	A	G	rs3749777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHGB1	NM_018922	exon1	c.A1581G	p.T527T	.	.	100	12	56	0	A|0.882;G|0.118	33
PCDHGB2	56103	bcgsc.ca	37	5	140741738	140741738	+	Missense_Mutation	SNP	G	G	C	rs62378417	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHGB2	NM_018923	exon1	c.G2036C	p.R679P	.	.	178	12	58	0	G|0.882;C|0.118	33
PCDHGB2	56103	bcgsc.ca	37	5	140741761	140741761	+	Missense_Mutation	SNP	A	A	G	rs57735633	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHGB2	NM_018923	exon1	c.A2059G	p.K687E	.	.	204	15	70	0	A|0.877;G|0.123	33
PCDHGB4	8641	bcgsc.ca	37	5	140767902	140767902	+	Silent	SNP	C	C	A	rs67622091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032098	exon1	c.C451A	p.R151R	.	.	387	15	126	0	C|0.937;A|0.063	.
PCDHGB4	8641	bcgsc.ca	37	5	140767989	140767989	+	Silent	SNP	C	C	T	rs68033444	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_032098	exon1	c.C538T	p.L180L	.	.	189	9	93	0	C|0.937;T|0.063	.
PCDHGC5	56097	hgsc.bcm.edu;bcgsc.ca	37	5	140869630	140869630	+	Missense_Mutation	SNP	G	G	A	rs2233603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCDHGC5	NM_018929	exon1	c.G823A	p.G275S	.	.	173	7	64	0	G|0.995;A|0.005	25
PCK1	5105	bcgsc.ca	37	20	56137834	56137834	+	Silent	SNP	A	A	G	rs1062601	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCK1	NM_002591	exon4	c.A489G	p.S163S	.	.	82	9	50	0	A|0.609;G|0.391	227
PCLO	27445	bcgsc.ca	37	7	82544987	82544987	+	Silent	SNP	A	A	G	rs17156844	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCLO	NM_014510	exon7	c.T12315C	p.H4105H	.	.	211	14	107	0	A|0.590;G|0.409	29
PCLO	27445	bcgsc.ca	37	7	82764791	82764791	+	Missense_Mutation	SNP	T	T	A	rs28726270	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCLO	NM_014510	exon3	c.A2075T	p.Q692L	.	.	888	25	343	0	T|0.958;A|0.042	29
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17796494	17796496	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCM1	NM_006197	exon5	c.588_590del	p.196_197del	.	.	199	96	150	0	.	742
PCNT	5116	bcgsc.ca	37	21	47838129	47838129	+	Silent	SNP	C	C	T	rs148444313	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCNT	NM_006031	exon31	c.C6933T	p.V2311V	.	.	307	11	108	0	C|0.998;T|0.002	141
PCNX	22990	bcgsc.ca	37	14	71444788	71444788	+	Silent	SNP	G	G	A	rs3814871	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCNX	NM_014982	exon6	c.G1734A	p.R578R	.	.	117	7	51	0	G|0.604;A|0.396	91
PCNXL2	80003	bcgsc.ca	37	1	233398713	233398713	+	Missense_Mutation	SNP	C	C	T	rs1033325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCNXL2	NM_014801	exon2	c.G350A	p.R117K	.	.	910	34	296	0	C|0.739;T|0.261	91
PCSK5	5125	bcgsc.ca	37	9	78923638	78923638	+	Missense_Mutation	SNP	C	C	T	rs114508164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PCSK5	NM_001190482	exon28	c.C3601T	p.P1201S	.	.	149	9	69	0	C|0.980;T|0.020	93
PDCD11	22984	bcgsc.ca	37	10	105164784	105164784	+	Silent	SNP	A	A	G	rs7914506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDCD11	NM_014976	exon5	c.A408G	p.L136L	.	.	425	30	130	0	A|0.942;G|0.058	275
PDCD6IP	10015	bcgsc.ca	37	3	33907915	33907915	+	Silent	SNP	A	A	G	rs61751641	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDCD6IP	NM_001162429	exon18	c.A2520G	p.P840P	.	.	241	7	73	0	A|0.957;G|0.043	228
PDCL3	79031	bcgsc.ca	37	2	101186088	101186088	+	Silent	SNP	C	C	T	rs1052117	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDCL3	NM_024065	exon4	c.C273T	p.F91F	.	.	302	8	112	0	C|0.467;T|0.533	90
PDE11A	50940	bcgsc.ca	37	2	178969039	178969039	+	Missense_Mutation	SNP	G	G	A	rs75672043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE11A	NM_001077197	exon2	c.C152T	p.T51I	.	.	276	11	132	0	G|0.913;A|0.087	93
PDE1B	5153	bcgsc.ca	37	12	54970454	54970454	+	Silent	SNP	T	T	C	rs1249950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE1B	NM_000924	exon14	c.T1476C	p.N492N	.	.	102	7	45	0	C|0.493;N|0.000	92
PDE1C	5137	bcgsc.ca	37	7	32209459	32209459	+	Silent	SNP	C	C	T	rs977626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE1C	NM_001191058	exon3	c.G246A	p.E82E	.	.	237	13	71	0	C|0.476;N|0.002	94
PDE4DIP	9659	bcgsc.ca	37	1	144854181	144854181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE4DIP	NM_014644	exon43	c.C6983A	p.A2328E	.	.	600	41	273	2	.	663
PDE4DIP	9659	bcgsc.ca	37	1	144874021	144874021	+	Missense_Mutation	SNP	G	G	A	rs142425746		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE4DIP	NM_014644	exon31	c.C4936T	p.H1646Y	.	.	429	10	141	0	G|0.999;A|0.001	663
PDE4DIP	9659	bcgsc.ca	37	1	144931461	144931461	+	Missense_Mutation	SNP	A	A	T	rs41315685	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE4DIP	NM_001002811	exon1	c.T248A	p.L83Q	.	.	250	9	77	0	A|0.809;T|0.191	663
PDE6A	5145	bcgsc.ca	37	5	149242764	149242764	+	Silent	SNP	C	C	T	rs10067462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE6A	NM_000440	exon21	c.G2424A	p.E808E	.	.	269	11	63	0	C|0.950;T|0.050	92
PDE6A	5145	bcgsc.ca	37	5	149278983	149278983	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE6A	NM_000440	exon9	c.T1218C	p.R406R	.	.	216	8	100	0	.	92
PDE6C	5146	bcgsc.ca	37	10	95425142	95425142	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE6C	NM_006204	exon22	c.T2544C	p.D848D	.	.	185	7	93	0	.	94
PDE6C	5146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95418883	95418883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE6C	NM_006204	exon18	c.G2167C	p.D723H	.	.	315	102	105	0	.	94
PDE6C	5146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95381757	95381757	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE6C	NM_006204	exon4	c.G792A	p.A264A	.	.	136	16	44	0	.	94
PDE7A	5150	bcgsc.ca	37	8	66631607	66631607	+	Missense_Mutation	SNP	C	C	T	rs28515659	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE7A	NM_001242318	exon13	c.G1367A	p.R456K	.	.	497	12	52	0	C|0.965;T|0.035	90
PDE7B	27115	bcgsc.ca	37	6	136495009	136495009	+	Silent	SNP	T	T	C	rs73555079	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDE7B	NM_018945	exon9	c.T786C	p.H262H	.	.	126	5	41	0	T|0.972;C|0.028	91
PDHA1	5160	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19373839	19373839	+	Silent	SNP	A	A	G	rs1126565	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDHA1	NM_001173454	exon9	c.A909G	p.A303A	.	.	84	21	36	0	A|0.650;C|0.000;G|0.350	227
PDHX	8050	ucsc.edu;bcgsc.ca	37	11	34938310	34938310	+	Silent	SNP	T	T	C	rs1049307	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDHX	NM_003477	exon1	c.T108C	p.S36S	.	.	87	15	24	0	T|0.801;C|0.199	226
PDIA2	64714	bcgsc.ca	37	16	334902	334902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDIA2	NM_006849	exon4	c.A565G	p.T189A	.	.	106	5	34	0	.	91
PDIA6	10130	bcgsc.ca	37	2	10930911	10930911	+	Silent	SNP	C	C	T	rs145487229	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDIA6	NM_005742	exon7	c.G633A	p.T211T	.	.	246	10	68	0	C|0.999;T|0.001	90
PDIA6	10130	bcgsc.ca	37	2	10942702	10942702	+	Silent	SNP	G	G	A	rs7568342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDIA6	NM_005742	exon2	c.C84T	p.I28I	.	.	260	14	97	0	G|0.896;A|0.104	90
PDLIM1	9124	bcgsc.ca	37	10	97023630	97023630	+	Missense_Mutation	SNP	T	T	C	rs2296961	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDLIM1	NM_020992	exon4	c.A524G	p.N175S	.	.	133	7	44	0	T|0.769;C|0.231	90
PDPN	10630	bcgsc.ca	37	1	13936953	13936953	+	Silent	SNP	C	C	T	rs12080985	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDPN	NM_198389	exon3	c.C501T	p.H167H	.	.	172	9	60	0	C|0.966;T|0.034	516
PDZD2	23037	bcgsc.ca	37	5	32074392	32074392	+	Silent	SNP	G	G	A	rs2291114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZD2	NM_178140	exon17	c.G3180A	p.T1060T	.	.	60	5	39	0	G|0.793;A|0.207	563
PDZD2	23037	bcgsc.ca	37	5	32087253	32087253	+	Silent	SNP	A	A	G	rs157495	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZD2	NM_178140	exon19	c.A3699G	p.S1233S	.	.	223	19	86	0	A|0.705;G|0.295	563
PDZD2	23037	bcgsc.ca	37	5	32091063	32091063	+	Silent	SNP	A	A	G	rs35923957	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZD2	NM_178140	exon19	c.A7509G	p.A2503A	.	.	123	7	50	0	A|0.971;G|0.029	563
PDZD2	23037	ucsc.edu;bcgsc.ca	37	5	32087828	32087828	+	Missense_Mutation	SNP	C	C	T	rs36097367	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZD2	NM_178140	exon19	c.C4274T	p.T1425M	.	.	112	14	41	0	C|0.961;T|0.039	563
PDZD3	79849	bcgsc.ca	37	11	119059404	119059404	+	Missense_Mutation	SNP	G	G	A	rs1815811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZD3	NM_001168468	exon9	c.G1115A	p.R372Q	.	.	136	12	45	0	G|0.395;A|0.605	153
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73433352	73433352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZRN3	NM_015009	exon10	c.C2365A	p.P789T	.	.	80	31	22	0	.	232
PDZRN4	29951	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41900463	41900463	+	Missense_Mutation	SNP	G	G	A	rs35577124	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PDZRN4	NM_001164595	exon4	c.G1049A	p.R350H	.	.	163	22	71	0	G|0.921;A|0.079	296
PEAK1	0	bcgsc.ca	37	15	77450964	77450964	+	Missense_Mutation	SNP	C	C	T	rs12909704	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024776	exon6	c.G3212A	p.R1071K	.	.	283	14	82	0	C|0.760;T|0.240	.
PEBP4	157310	bcgsc.ca	37	8	22570905	22570905	+	Missense_Mutation	SNP	T	T	G	rs79936857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEBP4	NM_144962	exon7	c.A662C	p.Q221P	.	.	187	11	92	0	T|0.962;G|0.038	137
PECR	55825	bcgsc.ca	37	2	216923679	216923679	+	Missense_Mutation	SNP	C	C	T	rs1429148	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PECR	NM_018441	exon4	c.G445A	p.E149K	.	.	274	15	107	0	C|0.862;T|0.138	90
PEG3	5178	bcgsc.ca	37	19	57327718	57327718	+	Missense_Mutation	SNP	A	A	C	rs35087473	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEG3	NM_001146184	exon9	c.T2092G	p.S698A	.	.	273	9	111	0	A|0.992;C|0.008	164
PEG3	5178	hgsc.bcm.edu;bcgsc.ca	37	19	57328213	57328213	+	Missense_Mutation	SNP	C	C	A	rs28524173	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEG3	NM_001146184	exon9	c.G1597T	p.V533L	.	.	191	12	89	0	C|0.986;A|0.014	164
PELP1	27043	bcgsc.ca	37	17	4574751	4574751	+	Missense_Mutation	SNP	T	T	A	rs9436	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PELP1	NM_014389	exon17	c.A3376T	p.T1126S	.	.	152	8	38	0	T|0.413;A|0.587	24
PER1	5187	bcgsc.ca	37	17	8046675	8046675	+	Missense_Mutation	SNP	C	C	T	rs3027194	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PER1	NM_002616	exon19	c.G2981A	p.R994H	.	.	109	8	39	0	C|0.996;T|0.004	723
PEX12	5193	bcgsc.ca	37	17	33903014	33903014	+	Silent	SNP	G	G	A	rs138720627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEX12	NM_000286	exon3	c.C867T	p.D289D	.	.	489	20	255	1	G|0.992;A|0.008	90
PEX1	5189	bcgsc.ca	37	7	92123826	92123826	+	Silent	SNP	C	C	T	rs111704518	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEX1	NM_000466	exon18	c.G2901A	p.Q967Q	.	.	157	5	65	0	C|0.993;T|0.007	91
PEX1	5189	bcgsc.ca	37	7	92140324	92140324	+	Missense_Mutation	SNP	C	C	G	rs112822975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEX1	NM_000466	exon8	c.G1521C	p.W507C	.	.	518	19	225	0	C|0.994;G|0.006	91
PEX1	5189	bcgsc.ca	37	7	92146687	92146687	+	Missense_Mutation	SNP	G	G	T	rs73404416	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEX1	NM_000466	exon5	c.C1142A	p.A381D	.	.	403	18	136	0	G|0.992;T|0.008	91
PEX16	9409	bcgsc.ca	37	11	45937310	45937310	+	Silent	SNP	G	G	A	rs80275010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEX16	NM_004813	exon4	c.C303T	p.A101A	.	.	285	12	131	1	G|0.980;A|0.020	93
PEX5L	51555	hgsc.bcm.edu;bcgsc.ca	37	3	179537713	179537713	+	Silent	SNP	G	G	T	rs28682295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PEX5L	NM_016559	exon9	c.C874A	p.R292R	.	.	439	22	170	0	G|0.993;T|0.007	156
PFKFB2	5208	bcgsc.ca	37	1	207236524	207236524	+	Silent	SNP	G	G	A	rs2629639	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PFKFB2	NM_001018053	exon5	c.G345A	p.A115A	.	.	326	17	69	0	G|0.918;A|0.082	91
PGA5	5222	bcgsc.ca	37	11	61017171	61017171	+	Silent	SNP	T	T	C	rs111973782	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGA5	NM_014224	exon7	c.T804C	p.C268C	.	.	175	13	75	0	T|0.990;C|0.010	91
PGA5	5222	bcgsc.ca	37	11	61018642	61018642	+	Silent	SNP	C	C	T	rs12280940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGA5	NM_014224	exon9	c.C1056T	p.N352N	.	.	409	18	136	2	C|0.912;T|0.088	91
PGA5	5222	bcgsc.ca	37	11	61018732	61018732	+	Silent	SNP	C	C	T	rs2286878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGA5	NM_014224	exon9	c.C1146T	p.V382V	.	.	301	12	108	0	C|0.990;T|0.010	91
PGAM2	5224	bcgsc.ca	37	7	44104805	44104805	+	Silent	SNP	C	C	T	rs112828964	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGAM2	NM_000290	exon1	c.G324A	p.G108G	.	.	153	15	49	0	C|0.968;T|0.032	226
PGBD1	84547	bcgsc.ca	37	6	28269663	28269663	+	Missense_Mutation	SNP	A	A	G	rs1997660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGBD1	NM_001184743	exon7	c.A2032G	p.I678V	.	.	283	19	156	0	A|0.464;G|0.536	94
PGBD2	267002	bcgsc.ca	37	1	249211619	249211619	+	Missense_Mutation	SNP	G	G	A	rs77124333	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGBD2	NM_170725	exon3	c.G836A	p.R279Q	.	.	181	10	47	0	G|0.984;A|0.016	91
PGLYRP3	114771	bcgsc.ca	37	1	153277423	153277423	+	Missense_Mutation	SNP	C	C	T	rs843971	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGLYRP3	NM_052891	exon3	c.G376A	p.G126S	.	.	156	10	51	0	C|0.579;T|0.421	94
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153309676	153309676	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGLYRP4	NM_020393	exon8	c.C924A	p.T308T	.	.	65	26	23	0	.	94
PGM2	55276	bcgsc.ca	37	4	37836302	37836302	+	Silent	SNP	T	T	C	rs3752683	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGM2	NM_018290	exon3	c.T312C	p.S104S	.	.	512	23	167	0	T|0.651;C|0.349	91
PGM5	5239	bcgsc.ca	37	9	71002383	71002383	+	Silent	SNP	G	G	A	rs76026136		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGM5	NM_021965	exon4	c.G576A	p.E192E	.	.	445	14	143	0	.	92
PGM5	5239	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	70999315	70999315	+	Silent	SNP	T	T	C	rs17081271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PGM5	NM_021965	exon3	c.T426C	p.G142G	.	.	388	43	154	0	T|0.680;C|0.320	92
PHF14	9678	bcgsc.ca	37	7	11068409	11068409	+	Silent	SNP	A	A	G	rs140828362		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PHF14	NM_014660	exon7	c.A1419G	p.Q473Q	.	.	272	9	119	0	A|0.997;G|0.003	538
PHF15	23338	bcgsc.ca	37	5	133896638	133896638	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PHF15	NM_015288	exon6	c.T675C	p.C225C	.	.	140	6	46	0	.	90
PHF20	51230	bcgsc.ca	37	20	34526895	34526895	+	Silent	SNP	G	G	A	rs148086577	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PHF20	NM_016436	exon16	c.G2577A	p.T859T	.	.	61	5	33	0	G|0.996;A|0.004	515
PHLDB2	90102	bcgsc.ca	37	3	111688578	111688578	+	Silent	SNP	C	C	T	rs774854	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PHLDB2	NM_001134439	exon16	c.C3357T	p.D1119D	.	.	105	10	56	0	C|0.808;T|0.192	96
PHLDB2	90102	ucsc.edu;bcgsc.ca	37	3	111672825	111672825	+	Missense_Mutation	SNP	C	C	T	rs3749298	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PHLDB2	NM_001134439	exon12	c.C2821T	p.P941S	.	.	71	8	32	0	C|0.912;T|0.088	96
PHLDB2	90102	ucsc.edu;bcgsc.ca	37	3	111681145	111681145	+	Silent	SNP	A	A	T	rs712520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PHLDB2	NM_001134439	exon13	c.A3063T	p.P1021P	.	.	153	16	50	0	A|0.908;T|0.092	96
PI4KA	5297	bcgsc.ca	37	22	21165253	21165253	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PI4KA	NM_058004	exon10	c.1071+2T>C	.	.	.	118	6	61	1	.	454
PICALM	8301	hgsc.bcm.edu;bcgsc.ca	37	11	85692193	85692193	+	Silent	SNP	G	G	A	rs12295435	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PICALM	NM_007166	exon17	c.C1758T	p.T586T	.	.	200	10	95	0	G|0.959;A|0.041	659
PIEZO1	9780	hgsc.bcm.edu;bcgsc.ca	37	16	88782463	88782463	+	Silent	SNP	G	G	A	rs189107499	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001142864	exon50	c.C7194T	p.T2398T	.	.	89	7	27	0	G|0.994;A|0.006	.
PIEZO1	9780	ucsc.edu	37	16	88782049	88782049	+	Silent	SNP	C	C	T	rs115423293	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001142864	exon51	c.G7530A	p.P2510P	.	.	55	5	22	0	C|0.993;T|0.007	.
PIEZO2	63895	bcgsc.ca	37	18	10696474	10696474	+	Silent	SNP	G	G	A	rs16975188	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_022068	exon42	c.C6552T	p.S2184S	.	.	114	6	51	0	G|0.957;A|0.043	.
PIGB	9488	bcgsc.ca	37	15	55632859	55632859	+	Missense_Mutation	SNP	G	G	T	rs678892	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGB	NM_004855	exon8	c.G896T	p.W299L	.	.	411	20	139	0	G|0.418;T|0.582	226
PIGG	54872	bcgsc.ca	37	4	515489	515489	+	Missense_Mutation	SNP	G	G	A	rs13115344	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGG	NM_001127178	exon8	c.G1373A	p.R458H	.	.	662	21	208	1	G|0.794;A|0.206	92
PIGG	54872	bcgsc.ca	37	4	517461	517461	+	Missense_Mutation	SNP	T	T	C	rs7666425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGG	NM_001127178	exon9	c.T1828C	p.C610R	.	.	196	7	76	0	T|0.785;C|0.215	92
PIGR	5284	bcgsc.ca	37	1	207106444	207106444	+	Silent	SNP	A	A	G	rs172361	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGR	NM_002644	exon7	c.T1773C	p.F591F	.	.	170	9	52	0	A|0.772;G|0.228	92
PIGR	5284	bcgsc.ca	37	1	207106478	207106478	+	Missense_Mutation	SNP	G	G	A	rs291102	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGR	NM_002644	exon7	c.C1739T	p.A580V	.	.	132	7	43	0	G|0.582;T|0.054	92
PIGX	54965	hgsc.bcm.edu;bcgsc.ca	37	3	196454936	196454936	+	Missense_Mutation	SNP	G	G	A	rs150787833	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGX	NM_017861	exon4	c.G461A	p.R154Q	.	.	301	22	141	0	G|0.999;A|0.001	90
PIGZ	80235	bcgsc.ca	37	3	196674916	196674916	+	Silent	SNP	A	A	C	rs1147240	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGZ	NM_025163	exon3	c.T852G	p.A284A	.	.	88	7	36	0	A|0.479;C|0.521	93
PIGZ	80235	ucsc.edu;bcgsc.ca	37	3	196674749	196674749	+	Missense_Mutation	SNP	C	C	T	rs4916589	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGZ	NM_025163	exon3	c.G1019A	p.R340Q	.	.	83	7	45	0	C|0.368;T|0.632	93
PIGZ	80235	ucsc.edu;bcgsc.ca	37	3	196674879	196674879	+	Silent	SNP	A	A	G	rs12636891	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIGZ	NM_025163	exon3	c.T889C	p.L297L	.	.	78	9	41	0	A|0.453;G|0.547	93
PIH1D1	55011	bcgsc.ca	37	19	49949652	49949652	+	Missense_Mutation	SNP	G	G	A	rs7462	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIH1D1	NM_017916	exon9	c.C860T	p.P287L	.	.	245	11	83	0	G|0.723;A|0.277	90
PIK3C2G	5288	bcgsc.ca	37	12	18473928	18473928	+	Silent	SNP	T	T	C	rs12309666	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIK3C2G	NM_004570	exon7	c.T1170C	p.N390N	.	.	627	19	249	1	T|0.786;C|0.214	1312
PIK3C2G	5288	bcgsc.ca	37	12	18499628	18499628	+	Missense_Mutation	SNP	A	A	G	rs79247100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIK3C2G	NM_004570	exon11	c.A1483G	p.N495D	.	.	186	10	72	0	A|0.996;G|0.004	1312
PIK3C2G	5288	bcgsc.ca	37	12	18656225	18656225	+	Silent	SNP	G	G	A	rs11044142	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIK3C2G	NM_004570	exon22	c.G2904A	p.Q968Q	.	.	319	8	73	0	G|0.843;A|0.157	1312
PIK3C2G	5288	bcgsc.ca	37	12	18715673	18715673	+	Silent	SNP	A	A	G	rs11044184	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIK3C2G	NM_004570	exon26	c.A3504G	p.K1168K	.	.	201	10	95	0	A|0.941;G|0.059	1312
PIK3CA	5290	hgsc.bcm.edu;bcgsc.ca	37	3	178927410	178927410	+	Missense_Mutation	SNP	A	A	G	rs3729680	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIK3CA	NM_006218	exon7	c.A1173G	p.I391M	.	.	470	34	169	0	A|0.924;G|0.076	27752
PIK3CD	5293	bcgsc.ca	37	1	9784423	9784423	+	Silent	SNP	C	C	T	rs41476649	bycluster;byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIK3CD	NM_005026	exon22	c.C2808T	p.Y936Y	.	.	122	10	60	0	C|0.800;T|0.200	1311
PIKFYVE	200576	bcgsc.ca	37	2	209218837	209218837	+	Silent	SNP	G	G	A	rs146239645	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIKFYVE	NM_015040	exon40	c.G6060A	p.L2020L	.	.	180	10	73	0	G|0.999;A|0.001	583
PILRB	29990	bcgsc.ca	37	7	99956517	99956517	+	Missense_Mutation	SNP	A	A	T	rs200057149		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PILRB	NM_178238	exon2	c.A269T	p.H90L	.	.	250	8	82	0	A|0.999;T|0.000	90
PIN1	5300	bcgsc.ca	37	19	9949152	9949152	+	Silent	SNP	G	G	A	rs2233682	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIN1	NM_006221	exon2	c.G99A	p.Q33Q	.	.	127	8	42	0	G|0.936;A|0.064	227
PIN4P1	728758	ucsc.edu	37	15	44168470	44168470	+	RNA	SNP	C	C	T	rs12442297	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	205	21	126	1	C|0.795;T|0.205	.
PINX1	54984	bcgsc.ca	37	8	10623289	10623289	+	Silent	SNP	A	A	G	rs17152329	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PINX1	NM_017884	exon7	c.T609C	p.S203S	.	.	85	6	43	0	A|0.965;G|0.035	726
PIP4K2B	8396	bcgsc.ca	37	17	36927398	36927398	+	Missense_Mutation	SNP	A	A	C	rs111439746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIP4K2B	NM_003559	exon8	c.T935G	p.V312G	.	.	275	26	64	3	A|0.998;C|0.002	266
PISD	23761	bcgsc.ca	37	22	32019696	32019696	+	Missense_Mutation	SNP	G	G	A	rs57725422	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PISD	NM_014338	exon4	c.C193T	p.R65W	.	.	190	7	79	0	G|0.985;A|0.015	91
PIWIL2	55124	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	22147755	22147755	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIWIL2	NM_001135721	exon10	c.C1077A	p.I359I	.	.	191	16	89	0	.	91
PIWIL3	440822	bcgsc.ca	37	22	25115799	25115799	+	Silent	SNP	G	G	A	rs61740100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIWIL3	NM_001008496	exon20	c.C2448T	p.N816N	.	.	439	14	159	0	G|0.995;A|0.005	93
PIWIL4	143689	bcgsc.ca	37	11	94326765	94326765	+	Missense_Mutation	SNP	G	G	C	rs57607909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIWIL4	NM_152431	exon9	c.G1108C	p.A370P	.	.	147	11	46	0	G|0.768;C|0.232	91
PIWIL4	143689	bcgsc.ca	37	11	94337220	94337220	+	Silent	SNP	C	C	T	rs593690	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PIWIL4	NM_152431	exon13	c.C1636T	p.L546L	.	.	231	21	88	1	C|0.455;T|0.545	91
PKD1L1	168507	bcgsc.ca	37	7	47927744	47927744	+	Missense_Mutation	SNP	C	C	T	rs56100904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L1	NM_138295	exon17	c.G2680A	p.V894I	.	.	138	5	56	0	C|0.902;T|0.098	145
PKD1L2	114780	bcgsc.ca	37	16	81185412	81185412	+	RNA	SNP	C	C	T	rs34444956	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	.	.	.	.	.	.	140	6	71	0	C|0.827;T|0.173	92
PKD1L2	114780	bcgsc.ca	37	16	81185419	81185419	+	RNA	SNP	G	G	C	rs57461213	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	.	.	.	.	.	.	152	6	75	0	G|0.827;C|0.173	92
PKD1L2	114780	bcgsc.ca	37	16	81187852	81187852	+	RNA	SNP	G	G	A	rs8050904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	.	.	.	.	.	.	440	16	134	0	G|0.941;A|0.059	92
PKD1L2	114780	bcgsc.ca	37	16	81208348	81208348	+	Missense_Mutation	SNP	G	G	T	rs745211	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	NM_001076780	exon16	c.C2755A	p.L919M	.	.	121	6	56	0	G|0.925;T|0.075	92
PKD1L2	114780	bcgsc.ca	37	16	81224271	81224271	+	Missense_Mutation	SNP	C	C	G	rs74029025	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	NM_001076780	exon9	c.G1670C	p.S557T	.	.	171	11	85	0	C|0.978;G|0.022	92
PKD1L2	114780	bcgsc.ca	37	16	81248644	81248644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	NM_001076780	exon3	c.A619G	p.S207G	.	.	90	4	45	0	.	92
PKD1L2	114780	hgsc.bcm.edu;bcgsc.ca	37	16	81232391	81232391	+	Silent	SNP	T	T	A	rs116372721		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L2	NM_001076780	exon7	c.A1419T	p.S473S	.	.	202	11	114	0	T|0.998;A|0.002	92
PKD1L3	342372	bcgsc.ca	37	16	72007399	72007399	+	RNA	SNP	C	C	T	rs9925415	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L3	.	.	.	.	.	.	59	5	30	0	C|0.465;T|0.535	68
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72001136	72001136	+	RNA	SNP	G	G	A	rs4788587	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L3	.	.	.	.	.	.	124	15	36	0	G|0.739;A|0.261	68
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72020134	72020134	+	RNA	SNP	T	T	C	rs12708923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD1L3	.	.	.	.	.	.	278	29	112	0	C|0.529;N|0.000	68
PKD2L1	9033	bcgsc.ca	37	10	102056790	102056790	+	Missense_Mutation	SNP	G	G	A	rs7909153	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKD2L1	NM_016112	exon6	c.C1132T	p.R378W	.	.	221	9	68	0	G|0.933;A|0.067	94
PKDREJ	10343	bcgsc.ca	37	22	46656562	46656562	+	Silent	SNP	A	A	G	rs7287371	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKDREJ	NM_006071	exon1	c.T2658C	p.Y886Y	.	.	262	14	89	0	A|0.942;G|0.058	156
PKHD1	5314	bcgsc.ca	37	6	51491866	51491866	+	Missense_Mutation	SNP	A	A	T	rs2661488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKHD1	NM_138694	exon66	c.T11714A	p.I3905N	.	.	348	14	151	0	A|0.959;T|0.041	603
PKHD1	5314	bcgsc.ca	37	6	51824680	51824680	+	Silent	SNP	G	G	A	rs1266923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKHD1	NM_170724	exon36	c.C5896T	p.L1966L	.	.	200	8	77	0	G|0.938;A|0.062	603
PKLR	5313	ucsc.edu	37	1	155260383	155260383	+	Silent	SNP	G	G	T	rs1052176	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKLR	NM_000298	exon11	c.C1705A	p.R569R	.	.	74	9	22	0	G|0.583;T|0.417	229
PKN1	5585	bcgsc.ca	37	19	14581063	14581063	+	Silent	SNP	A	A	G	rs1042728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKN1	NM_213560	exon19	c.A2400G	p.R800R	.	.	167	10	73	0	A|0.837;G|0.163	1481
PKN2	5586	bcgsc.ca	37	1	89237556	89237556	+	Silent	SNP	C	C	T	rs9651072	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKN2	NM_006256	exon6	c.C979T	p.L327L	.	.	114	7	51	0	C|0.889;T|0.111	522
PKN3	29941	bcgsc.ca	37	9	131477130	131477130	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKN3	NM_013355	exon13	c.A1638G	p.P546P	.	.	171	5	78	0	.	521
PKP1	5317	bcgsc.ca	37	1	201285712	201285712	+	Silent	SNP	C	C	T	rs7514146	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKP1	NM_001005337	exon4	c.C733T	p.L245L	.	.	189	6	63	0	C|0.862;T|0.138	92
PKP1	5317	ucsc.edu;bcgsc.ca	37	1	201252866	201252866	+	Silent	SNP	C	C	T	rs2268147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKP1	NM_001005337	exon1	c.C36T	p.Y12Y	.	.	93	9	61	0	C|0.839;T|0.161	92
PKP4	8502	bcgsc.ca	37	2	159537137	159537137	+	Missense_Mutation	SNP	G	G	A	rs142456938	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PKP4	NM_003628	exon22	c.G3527A	p.R1176Q	.	.	236	9	102	0	G|0.995;A|0.005	97
PLA1A	51365	bcgsc.ca	37	3	119327653	119327653	+	Silent	SNP	T	T	C	rs1723969	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLA1A	NM_001206960	exon3	c.T312C	p.F104F	.	.	346	14	121	1	T|0.678;C|0.322	92
PLA1A	51365	bcgsc.ca	37	3	119336962	119336962	+	Missense_Mutation	SNP	G	G	A	rs2692622	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLA1A	NM_015900	exon7	c.G851A	p.S284N	.	.	474	17	131	1	G|0.946;A|0.054	92
PLA2G2D	26279	bcgsc.ca	37	1	20442074	20442074	+	Missense_Mutation	SNP	T	T	C	rs62541891	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLA2G2D	NM_012400	exon3	c.A218G	p.H73R	.	.	104	7	53	0	T|0.995;C|0.005	90
PLA2G2D	26279	ucsc.edu;bcgsc.ca	37	1	20442054	20442054	+	Missense_Mutation	SNP	T	T	C	rs584367	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLA2G2D	NM_012400	exon3	c.A238G	p.S80G	.	.	111	12	58	0	C|0.710;N|0.000	90
PLA2G6	8398	bcgsc.ca	37	22	38565247	38565247	+	Missense_Mutation	SNP	T	T	C	rs11570606	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLA2G6	NM_003560	exon2	c.A187G	p.R63G	.	.	130	7	37	0	T|0.995;C|0.005	91
PLA2G7	7941	bcgsc.ca	37	6	46684222	46684222	+	Missense_Mutation	SNP	C	C	T	rs1805017	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLA2G7	NM_005084	exon4	c.G275A	p.R92H	.	.	142	8	66	0	C|0.737;T|0.263	90
PLAA	9373	bcgsc.ca	37	9	26923258	26923258	+	Silent	SNP	G	G	A	rs112768524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLAA	NM_001031689	exon7	c.C957T	p.H319H	.	.	247	7	139	0	G|0.987;A|0.013	514
PLAT	5327	hgsc.bcm.edu	37	8	42033519	42033519	+	Nonsense_Mutation	SNP	G	G	A	rs1804182	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLAT	NM_000930	exon14	c.C1681T	p.R561X	.	.	229	14	134	0	G|0.992;A|0.008	226
PLCB1	23236	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	8770875	8770875	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCB1	NM_015192	exon31	c.C3390C	p.H1130H	.	.	304	18	135	0	.	297
PLCD4	84812	hgsc.bcm.edu;bcgsc.ca	37	2	219480468	219480468	+	Silent	SNP	G	G	A	rs7582929		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCD4	NM_032726	exon2	c.G6A	p.A2A	.	.	198	11	48	0	G|0.995;A|0.005	661
PLCE1	51196	bcgsc.ca	37	10	95791613	95791613	+	Silent	SNP	T	T	C	rs17109671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCE1	NM_016341	exon2	c.T810C	p.C270C	.	.	241	8	103	1	T|0.608;C|0.392	229
PLCE1	51196	bcgsc.ca	37	10	95791763	95791763	+	Silent	SNP	G	G	A	rs17109674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCE1	NM_016341	exon2	c.G960A	p.E320E	.	.	172	8	70	0	G|0.627;A|0.373	229
PLCE1	51196	bcgsc.ca	37	10	96039597	96039597	+	Missense_Mutation	SNP	G	G	C	rs2274224	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCE1	NM_016341	exon20	c.G4724C	p.R1575P	.	.	120	9	44	1	G|0.526;C|0.474	229
PLCE1	51196	bcgsc.ca	37	10	96058298	96058298	+	Missense_Mutation	SNP	C	C	T	rs3765524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCE1	NM_016341	exon24	c.C5330T	p.T1777I	.	.	148	11	49	0	C|0.684;T|0.316	229
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95891985	95891985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCE1	NM_016341	exon3	c.C1261T	p.H421Y	.	.	123	18	54	0	.	229
PLCH1	23007	bcgsc.ca	37	3	155241740	155241740	+	Silent	SNP	A	A	G	rs9840234	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCH1	NM_001130960	exon10	c.T1380C	p.S460S	.	.	236	18	81	0	A|0.252;G|0.748	151
PLCL1	5334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950547	198950547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCL1	NM_006226	exon2	c.T2306C	p.V769A	.	.	283	88	147	1	.	228
PLCXD1	55344	bcgsc.ca	37	X	215809	215809	+	Missense_Mutation	SNP	A	A	G	rs143354504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLCXD1	NM_018390	exon7	c.A779G	p.Y260C	.	.	172	10	65	0	A|0.989;G|0.011	136
PLD1	5337	bcgsc.ca	37	3	171338237	171338237	+	Silent	SNP	T	T	G	rs9881788	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLD1	NM_002662	exon24	c.A2667C	p.V889V	.	.	192	15	62	0	T|0.504;G|0.496	660
PLEK2	26499	bcgsc.ca	37	14	67857404	67857404	+	Silent	SNP	G	G	A	rs144517635		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEK2	NM_016445	exon7	c.C831T	p.F277F	.	.	148	7	46	0	G|1.000;A|0.000	92
PLEK	5341	bcgsc.ca	37	2	68607947	68607947	+	Missense_Mutation	SNP	G	G	T	rs3816281	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEK	NM_002664	exon3	c.G291T	p.K97N	.	.	101	5	47	0	G|0.661;N|0.000	91
PLEKHA4	57664	bcgsc.ca	37	19	49368843	49368843	+	Missense_Mutation	SNP	T	T	C	rs506425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHA4	NM_001161354	exon3	c.A109G	p.I37V	.	.	186	12	82	0	T|0.416;G|0.085	227
PLEKHA5	54477	bcgsc.ca	37	12	19496328	19496328	+	Silent	SNP	G	G	A	rs148911990	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHA5	NM_001256470	exon22	c.G2622A	p.G874G	.	.	311	13	99	0	G|0.996;A|0.004	227
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204217949	204217949	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHA6	NM_014935	exon12	c.G1824T	p.T608T	.	.	111	46	35	0	.	654
PLEKHA7	144100	bcgsc.ca	37	11	16822604	16822604	+	Missense_Mutation	SNP	T	T	C	rs146070013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHA7	NM_175058	exon17	c.A2326G	p.N776D	.	.	257	12	113	0	T|0.985;C|0.015	227
PLEKHA7	144100	bcgsc.ca	37	11	16824554	16824554	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHA7	NM_175058	exon15	c.T2122C	p.L708L	.	.	98	5	55	0	.	227
PLEKHG2	64857	bcgsc.ca	37	19	39914644	39914644	+	Silent	SNP	G	G	A	rs34350479	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHG2	NM_022835	exon19	c.G2871A	p.K957K	.	.	131	10	58	0	G|0.933;A|0.067	274
PLEKHG2	64857	hgsc.bcm.edu;bcgsc.ca	37	19	39913894	39913894	+	Missense_Mutation	SNP	G	G	A	rs61730570	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHG2	NM_022835	exon18	c.G2200A	p.E734K	.	.	195	9	60	0	G|0.994;A|0.006	274
PLEKHG4	25894	ucsc.edu;bcgsc.ca	37	16	67318242	67318242	+	Missense_Mutation	SNP	A	A	G	rs8044843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHG4	NM_001129728	exon12	c.A1574G	p.D525G	.	.	83	18	29	0	A|0.727;G|0.273	92
PLEKHG5	57449	hgsc.bcm.edu;bcgsc.ca	37	1	6528320	6528320	+	Missense_Mutation	SNP	C	C	T	rs61737997	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHG5	NM_001265592	exon21	c.G2813A	p.R938H	.	.	193	13	60	0	C|0.973;T|0.027	652
PLEKHH2	130271	bcgsc.ca	37	2	43926973	43926973	+	Silent	SNP	C	C	T	rs144320544	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHH2	NM_172069	exon8	c.C876T	p.D292D	.	.	264	9	101	0	C|0.992;T|0.008	92
PLEKHM1P	440456	bcgsc.ca	37	17	62796480	62796480	+	RNA	SNP	C	C	T	rs145320031	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	247	11	90	0	C|0.992;T|0.008	.
PLEKHM1P	440456	bcgsc.ca	37	17	62811364	62811364	+	RNA	SNP	A	A	C	rs2074181		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	101	11	31	0	T|0.770;G|0.230	.
PLEKHM3	389072	ucsc.edu	37	2	208811097	208811097	+	Silent	SNP	C	C	T	rs10932215	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHM3	NM_001080475	exon4	c.G1686A	p.K562K	.	.	110	11	26	0	C|0.408;T|0.592	23
PLEKHN1	84069	hgsc.bcm.edu;bcgsc.ca	37	1	907676	907676	+	Missense_Mutation	SNP	A	A	T	rs145042066	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLEKHN1	NM_001160184	exon10	c.A910T	p.I304F	.	.	86	5	33	0	A|0.998;T|0.002	227
PLIN2	123	bcgsc.ca	37	9	19126281	19126281	+	Silent	SNP	C	C	T	rs2228416	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLIN2	NM_001122	exon3	c.G57A	p.L19L	.	.	162	10	64	0	C|0.910;T|0.090	92
PLIN4	729359	bcgsc.ca	37	19	4512669	4512669	+	Missense_Mutation	SNP	T	T	C	rs55901236	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLIN4	NM_001080400	exon3	c.A1261G	p.T421A	.	.	217	18	73	0	T|0.495;C|0.505	68
PLK2	10769	bcgsc.ca	37	5	57753937	57753937	+	Silent	SNP	C	C	T	rs2172529	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLK2	NM_006622	exon5	c.G687A	p.R229R	.	.	132	8	50	0	C|0.987;T|0.013	409
PLOD1	5351	bcgsc.ca	37	1	12009956	12009956	+	Missense_Mutation	SNP	G	G	A	rs7551175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLOD1	NM_000302	exon3	c.G295A	p.A99T	.	.	81	5	50	0	G|0.733;A|0.267	155
PLOD1	5351	bcgsc.ca	37	1	12010469	12010469	+	Missense_Mutation	SNP	G	G	T	rs2273285	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLOD1	NM_000302	exon4	c.G358T	p.A120S	.	.	85	7	37	0	G|0.855;T|0.145	155
PLP1	5354	bcgsc.ca	37	X	103042882	103042882	+	Silent	SNP	T	T	C	rs1126707	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLP1	NM_001128834	exon5	c.T609C	p.D203D	.	.	152	7	38	0	T|0.774;C|0.226	555
PLS1	5357	bcgsc.ca	37	3	142395072	142395072	+	Missense_Mutation	SNP	A	A	G	rs35710125	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLS1	NM_001172312	exon5	c.A438G	p.I146M	.	.	394	12	125	1	A|0.983;G|0.017	91
PLXNA1	5361	bcgsc.ca	37	3	126708515	126708515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLXNA1	NM_032242	exon1	c.T1079C	p.F360S	.	.	150	6	51	0	.	93
PLXNA4	91584	bcgsc.ca	37	7	131866206	131866206	+	Silent	SNP	C	C	T	rs17166227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLXNA4	NM_020911	exon18	c.G3426A	p.P1142P	.	.	201	14	55	0	C|0.938;T|0.062	91
PLXND1	23129	bcgsc.ca	37	3	129275206	129275206	+	Silent	SNP	C	C	T	rs11920311	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLXND1	NM_015103	exon36	c.G5727A	p.Q1909Q	.	.	270	11	67	0	C|0.790;T|0.210	90
PLXND1	23129	bcgsc.ca	37	3	129289752	129289752	+	Silent	SNP	C	C	T	rs2285365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLXND1	NM_015103	exon19	c.G3627A	p.Q1209Q	.	.	383	13	137	0	C|0.857;T|0.143	90
PLXND1	23129	bcgsc.ca	37	3	129291499	129291499	+	Silent	SNP	G	G	A	rs2285368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PLXND1	NM_015103	exon15	c.C3030T	p.S1010S	.	.	185	11	44	0	G|0.865;A|0.135	90
PM20D1	148811	bcgsc.ca	37	1	205810947	205810947	+	Missense_Mutation	SNP	C	C	T	rs11240573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PM20D1	NM_152491	exon9	c.G1036A	p.G346R	.	.	309	22	158	0	C|0.906;T|0.094	69
PMF1	11243	bcgsc.ca	37	1	156206121	156206121	+	Missense_Mutation	SNP	G	G	A	rs1052067	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PMF1	NM_001199654	exon4	c.G417A	p.M139I	.	.	195	6	58	0	G|0.788;A|0.212	44
PMFBP1	83449	bcgsc.ca	37	16	72156842	72156842	+	Missense_Mutation	SNP	T	T	G	rs16973716	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PMFBP1	NM_031293	exon19	c.A2739C	p.K913N	.	.	85	7	29	0	T|0.542;G|0.458	92
PMPCB	9512	bcgsc.ca	37	7	102939019	102939019	+	Missense_Mutation	SNP	T	T	C	rs62622397	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PMPCB	NM_004279	exon2	c.T104C	p.L35S	.	.	131	7	45	0	T|0.927;C|0.073	94
PNKD	25953	bcgsc.ca	37	2	219205471	219205471	+	Silent	SNP	G	G	A	rs34014804	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNKD	NM_015488	exon5	c.G486A	p.G162G	.	.	154	9	32	0	G|0.939;A|0.061	90
PNLIPRP1	5407	bcgsc.ca	37	10	118357413	118357413	+	Silent	SNP	T	T	C	rs62641721	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNLIPRP1	NM_006229	exon7	c.T648C	p.F216F	.	.	333	8	87	0	T|0.981;C|0.019	154
PNLIPRP3	119548	bcgsc.ca	37	10	118231305	118231305	+	Silent	SNP	A	A	G	rs10510020	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNLIPRP3	NM_001011709	exon10	c.A1086G	p.K362K	.	.	315	13	147	1	A|0.821;G|0.179	91
PNLIPRP3	119548	bcgsc.ca	37	10	118236269	118236269	+	Silent	SNP	A	A	G	rs76805457	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNLIPRP3	NM_001011709	exon11	c.A1278G	p.E426E	.	.	181	6	111	0	A|0.989;G|0.011	91
PNN	5411	bcgsc.ca	37	14	39650824	39650824	+	Silent	SNP	C	C	T	rs1050136	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNN	NM_002687	exon9	c.C1911T	p.G637G	.	.	85	8	63	0	C|0.909;T|0.091	91
PNO1	56902	ucsc.edu;bcgsc.ca	37	2	68385097	68385097	+	Missense_Mutation	SNP	A	A	G	rs2044693	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNO1	NM_020143	exon1	c.A31G	p.R11G	.	.	82	9	43	0	T|0.088;G|0.484	68
PNP	4860	bcgsc.ca	37	14	20943302	20943302	+	Missense_Mutation	SNP	G	G	C	rs145773529	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNP	NM_000270	exon5	c.G543C	p.M181I	.	.	211	11	57	1	G|0.998;C|0.002	229
PNPLA1	285848	bcgsc.ca	37	6	36269725	36269725	+	Missense_Mutation	SNP	A	A	G	rs34598813	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNPLA1	NM_001145717	exon6	c.A863G	p.E288G	.	.	129	9	45	0	A|0.923;G|0.077	137
PNPLA1	285848	bcgsc.ca	37	6	36274153	36274153	+	Missense_Mutation	SNP	C	C	T	rs12197079	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNPLA1	NM_001145717	exon7	c.C1469T	p.T490M	.	.	135	7	62	0	C|0.747;N|0.000	137
PNPLA1	285848	bcgsc.ca	37	6	36275458	36275458	+	Missense_Mutation	SNP	T	T	C	rs4713956	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNPLA1	NM_001145717	exon8	c.T1564C	p.S522P	.	.	240	9	118	0	C|0.644;N|0.000	137
PNPT1	87178	bcgsc.ca	37	2	55872538	55872538	+	Missense_Mutation	SNP	T	T	C	rs7594497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNPT1	NM_033109	exon22	c.A1768G	p.N590D	.	.	367	26	151	0	T|0.855;C|0.145	90
PNRC1	10957	bcgsc.ca	37	6	89793894	89793894	+	Silent	SNP	G	G	C	rs1130809	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PNRC1	NM_006813	exon2	c.G963C	p.T321T	.	.	187	8	91	0	G|0.746;C|0.254	186
POC5	134359	bcgsc.ca	37	5	75001590	75001590	+	Missense_Mutation	SNP	T	T	A	rs77025299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POC5	NM_001099271	exon4	c.A246T	p.E82D	.	.	116	6	46	0	T|0.964;A|0.036	45
POC5	134359	bcgsc.ca	37	5	75003678	75003678	+	Missense_Mutation	SNP	T	T	C	rs2307111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POC5	NM_001099271	exon3	c.A107G	p.H36R	.	.	322	20	125	0	T|0.429;C|0.570	45
PODN	127435	bcgsc.ca	37	1	53532535	53532535	+	Missense_Mutation	SNP	G	G	C	rs17107806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PODN	NM_001199081	exon2	c.G28C	p.A10P	.	.	124	8	31	0	G|0.909;C|0.091	92
PODNL1	79883	bcgsc.ca	37	19	14048714	14048714	+	Missense_Mutation	SNP	G	G	A	rs3745467	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PODNL1	NM_024825	exon2	c.C130T	p.R44W	.	.	133	8	28	0	G|0.978;A|0.022	90
POF1B	79983	bcgsc.ca	37	X	84558489	84558489	+	Silent	SNP	G	G	C	rs363754	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POF1B	NM_024921	exon15	c.C1572G	p.L524L	.	.	200	12	103	0	G|0.698;0|0.003	130
POFUT1	23509	ucsc.edu;bcgsc.ca	37	20	30822455	30822455	+	Silent	SNP	C	C	T	rs7263390	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POFUT1	NM_015352	exon7	c.C1158T	p.D386D	.	.	117	14	30	0	C|0.973;T|0.027	650
POLG2	11232	ucsc.edu;bcgsc.ca	37	17	62492582	62492582	+	Missense_Mutation	SNP	C	C	T	rs1427463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLG2	NM_007215	exon1	c.G505A	p.A169T	.	.	177	17	61	0	C|0.726;T|0.274	227
POLH	5429	bcgsc.ca	37	6	43582091	43582091	+	Missense_Mutation	SNP	A	A	T	rs6941583	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLH	NM_006502	exon11	c.A1939T	p.M647L	.	.	213	20	78	0	A|0.875;T|0.125	290
POLN	353497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2130928	2130928	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLN	NM_181808	exon16	c.A1845G	p.K615K	.	.	273	76	132	0	.	539
POLQ	10721	bcgsc.ca	37	3	121186422	121186422	+	Missense_Mutation	SNP	G	G	A	rs532411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLQ	NM_199420	exon24	c.C6911T	p.A2304V	.	.	203	9	58	0	G|0.711;T|0.023	664
POLQ	10721	bcgsc.ca	37	3	121206428	121206428	+	Missense_Mutation	SNP	C	C	A	rs61734794	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLQ	NM_199420	exon16	c.G5350T	p.D1784Y	.	.	204	9	109	0	C|0.981;A|0.019	664
POLQ	10721	bcgsc.ca	37	3	121208611	121208611	+	Missense_Mutation	SNP	G	G	A	rs34778629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLQ	NM_199420	exon16	c.C3167T	p.P1056L	.	.	112	7	48	0	G|0.982;A|0.018	664
POLQ	10721	bcgsc.ca	37	3	121208898	121208898	+	Silent	SNP	A	A	G	rs3218641	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLQ	NM_199420	exon16	c.T2880C	p.N960N	.	.	262	13	95	0	A|0.977;G|0.023	664
POLQ	10721	bcgsc.ca	37	3	121209015	121209015	+	Silent	SNP	G	G	A	rs3218646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLQ	NM_199420	exon16	c.C2763T	p.H921H	.	.	511	21	137	0	G|0.982;A|0.018	664
POLQ	10721	bcgsc.ca	37	3	121228960	121228960	+	Missense_Mutation	SNP	G	G	A	rs487848	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLQ	NM_199420	exon11	c.C1742T	p.A581V	.	.	400	16	136	0	G|0.889;A|0.111	664
POLR1A	25885	bcgsc.ca	37	2	86272758	86272758	+	Silent	SNP	G	G	A	rs1561328	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR1A	NM_015425	exon20	c.C2868T	p.L956L	.	.	345	24	184	0	G|0.811;A|0.189	93
POLR1A	25885	bcgsc.ca	37	2	86305307	86305307	+	Missense_Mutation	SNP	C	C	T	rs35443467	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR1A	NM_015425	exon10	c.G1187A	p.S396N	.	.	489	11	159	0	C|0.995;T|0.005	93
POLR1A	25885	bcgsc.ca	37	2	86305404	86305404	+	Missense_Mutation	SNP	T	T	C	rs35239368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR1A	NM_015425	exon10	c.A1090G	p.K364E	.	.	163	11	106	0	T|0.930;C|0.070	93
POLR1E	64425	bcgsc.ca	37	9	37492679	37492679	+	Silent	SNP	G	G	T	rs3739576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR1E	NM_022490	exon5	c.G369T	p.A123A	.	.	476	21	288	1	G|0.796;T|0.204	90
POLR1E	64425	bcgsc.ca	37	9	37500895	37500895	+	Silent	SNP	T	T	C	rs2277161	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR1E	NM_022490	exon10	c.T945C	p.T315T	.	.	297	21	77	0	T|0.730;C|0.270	90
POLR1E	64425	bcgsc.ca	37	9	37501807	37501807	+	Missense_Mutation	SNP	G	G	A	rs7867180	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR1E	NM_022490	exon11	c.G1066A	p.V356M	.	.	173	10	74	0	G|0.929;A|0.071	90
POLR2B	5431	bcgsc.ca	37	4	57876955	57876955	+	Silent	SNP	G	G	A	rs1718878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR2B	NM_000938	exon12	c.G1590A	p.A530A	.	.	492	11	154	0	G|0.635;A|0.365	92
POLR2H	5437	bcgsc.ca	37	3	184082931	184082931	+	Silent	SNP	T	T	C	rs11556518	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR2H	NM_006232	exon3	c.T168C	p.F56F	.	.	404	11	143	0	T|0.918;C|0.082	90
POLR2J4	84820	bcgsc.ca	37	7	44012284	44012284	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	315	8	108	0	.	.
POLR2J4	84820	bcgsc.ca	37	7	44012831	44012831	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	167	11	54	0	.	.
POLR3A	11128	bcgsc.ca	37	10	79745735	79745735	+	Silent	SNP	C	C	A	rs12241228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR3A	NM_007055	exon23	c.G2997T	p.V999V	.	.	222	12	85	0	C|0.923;A|0.077	90
POLR3C	10623	hgsc.bcm.edu	37	1	145601821	145601822	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLR3C	NM_006468	exon6	c.710_711insG	p.A237fs	.	.	220	15	81	0	.	91
POLRMT	5442	bcgsc.ca	37	19	630008	630008	+	Silent	SNP	G	G	A	rs113762653	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POLRMT	NM_005035	exon3	c.C354T	p.P118P	.	.	398	17	112	0	G|0.981;A|0.019	92
POM121C	100101267	bcgsc.ca	37	7	75053499	75053499	+	Missense_Mutation	SNP	G	G	A	rs113744930	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001099415	exon12	c.C881T	p.S294L	.	.	725	24	286	0	G|0.880;A|0.120	.
POM121L2	94026	bcgsc.ca	37	6	27277665	27277665	+	Missense_Mutation	SNP	G	G	A	rs2281023	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_033482	exon1	c.C2285T	p.P762L	.	.	226	12	83	0	G|0.884;A|0.116	.
POTEC	388468	bcgsc.ca	37	18	14543057	14543057	+	Missense_Mutation	SNP	T	T	G	rs9807633	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POTEC	NM_001137671	exon1	c.A89C	p.H30P	.	.	568	22	187	0	T|0.701;G|0.299	3
POTEC	388468	bcgsc.ca	37	18	14543098	14543098	+	Silent	SNP	C	C	T	rs11873462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POTEC	NM_001137671	exon1	c.G48A	p.K16K	.	.	774	24	269	0	C|0.744;T|0.256	3
POTEF	728378	bcgsc.ca	37	2	130832598	130832598	+	Missense_Mutation	SNP	C	C	T	rs3948036		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POTEF	NM_001099771	exon17	c.G2447A	p.R816H	.	.	421	14	134	0	.	27
POTEF	728378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130831830	130831830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POTEF	NM_001099771	exon17	c.G3215A	p.R1072H	.	.	266	98	127	0	.	27
POTEH	23784	mdanderson.org	37	22	16287720	16287720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POTEH	NM_001136213	exon1	c.A166G	p.T56A	.	.	102	18	14	0	.	1
POU5F1	5460	bcgsc.ca	37	6	31138107	31138107	+	Silent	SNP	G	G	A	rs1062630	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	POU5F1	NM_002701	exon1	c.C291T	p.G97G	.	.	115	8	34	0	G|0.784;A|0.216	658
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	282149	282149	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPAP2C	NM_177543	exon5	c.G765A	p.L255L	.	.	29	11	19	0	.	90
PPCDC	60490	bcgsc.ca	37	15	75320725	75320725	+	Silent	SNP	G	G	T	rs34029958	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPCDC	NM_021823	exon2	c.G66T	p.V22V	.	.	325	9	82	0	G|0.977;T|0.023	90
PPEF1	5475	hgsc.bcm.edu;bcgsc.ca	37	X	18802154	18802154	+	Silent	SNP	A	A	G	rs61731650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPEF1	NM_152226	exon12	c.A900G	p.V300V	.	.	191	15	79	0	A|0.983;G|0.017	226
PPFIA2	8499	bcgsc.ca	37	12	81769581	81769581	+	Silent	SNP	C	C	T	rs10862301	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPFIA2	NM_001220476	exon9	c.G1125A	p.L375L	.	.	455	17	174	0	C|0.573;N|0.000	231
PPFIBP1	8496	bcgsc.ca	37	12	27842052	27842052	+	Silent	SNP	G	G	A	rs61730962	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPFIBP1	NM_177444	exon26	c.G2619A	p.L873L	.	.	209	11	78	0	G|0.949;A|0.051	228
PPFIBP2	8495	bcgsc.ca	37	11	7673015	7673015	+	Silent	SNP	G	G	A	rs5864	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPFIBP2	NM_003621	exon23	c.G2376A	p.E792E	.	.	99	6	38	0	G|0.325;A|0.675	273
PPIC	5480	bcgsc.ca	37	5	122361581	122361581	+	Silent	SNP	G	G	A	rs74557853	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPIC	NM_000943	exon4	c.C408T	p.N136N	.	.	259	8	102	0	A|0.008;C|0.000;G|0.992	91
PPIL2	23759	bcgsc.ca	37	22	22049783	22049783	+	Silent	SNP	C	C	T	rs12484060	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPIL2	NM_148176	exon20	c.C1563T	p.S521S	.	.	277	14	82	0	C|0.616;T|0.384	92
PPIL6	285755	bcgsc.ca	37	6	109748308	109748308	+	Silent	SNP	A	A	G	rs141643047	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPIL6	NM_001111298	exon4	c.T472C	p.L158L	.	.	222	12	146	0	A|0.996;G|0.004	90
PPIL6	285755	bcgsc.ca	37	6	109752384	109752384	+	Silent	SNP	G	G	A	rs113598036	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPIL6	NM_001111298	exon3	c.C396T	p.S132S	.	.	128	6	63	0	G|0.976;A|0.024	90
PPM1M	132160	hgsc.bcm.edu;bcgsc.ca	37	3	52281703	52281703	+	Silent	SNP	G	G	A	rs115706924	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_144641	exon4	c.G603A	p.E201E	.	.	121	5	54	0	G|0.998;A|0.002	.
PPP1CC	5501	bcgsc.ca	37	12	111160003	111160003	+	Silent	SNP	G	G	A	rs1973505	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1CC	NM_002710	exon6	c.C819T	p.C273C	.	.	234	14	72	0	G|0.770;A|0.230	1082
PPP1R10	5514	bcgsc.ca	37	6	30572186	30572186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R10	NM_002714	exon13	c.C1205A	p.P402H	.	.	165	5	68	0	.	660
PPP1R10	5514	bcgsc.ca	37	6	30576601	30576601	+	Silent	SNP	T	T	C	rs34208587	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R10	NM_002714	exon5	c.A285G	p.L95L	.	.	441	16	221	0	T|0.992;C|0.008	660
PPP1R12A	4659	bcgsc.ca	37	12	80190650	80190650	+	Silent	SNP	C	C	G	rs2694657	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R12A	NM_002480	exon17	c.G2373C	p.L791L	.	.	305	17	124	0	C|0.688;G|0.312	273
PPP1R12C	54776	bcgsc.ca	37	19	55614923	55614923	+	Silent	SNP	T	T	C	rs2532060	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R12C	NM_017607	exon4	c.A585G	p.E195E	.	.	217	10	42	0	T|0.385;C|0.615	227
PPP1R13B	23368	hgsc.bcm.edu;bcgsc.ca	37	14	104206784	104206784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R13B	NM_015316	exon12	c.C1969T	p.P657S	.	.	171	8	41	0	.	227
PPP1R15A	23645	bcgsc.ca	37	19	49377319	49377319	+	Missense_Mutation	SNP	A	A	G	rs610308	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R15A	NM_014330	exon2	c.A829G	p.K277E	.	.	101	6	70	0	T|0.138;G|0.366	226
PPP1R15A	23645	ucsc.edu;bcgsc.ca	37	19	49377242	49377242	+	Missense_Mutation	SNP	G	G	C	rs557806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R15A	NM_014330	exon2	c.G752C	p.R251P	.	.	86	11	76	0	G|0.588;C|0.412	226
PPP1R15B	84919	hgsc.bcm.edu	37	1	204379574	204379575	+	Nonsense_Mutation	INS	-	-	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R15B	NM_032833	exon1	c.966_967insA	p.Y322_H323delinsX	.	.	365	21	116	0	.	652
PPP1R1A	5502	bcgsc.ca	37	12	54974798	54974798	+	Missense_Mutation	SNP	C	C	T	rs34376731	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R1A	NM_006741	exon6	c.G440A	p.G147D	.	.	873	32	239	0	C|0.987;T|0.013	226
PPP1R36	145376	hgsc.bcm.edu;bcgsc.ca	37	14	65032134	65032134	+	Missense_Mutation	SNP	G	G	A	rs139652811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_172365	exon5	c.G329A	p.R110Q	.	.	344	16	138	0	G|0.998;A|0.002	.
PPP1R3C	5507	hgsc.bcm.edu;bcgsc.ca	37	10	93390069	93390069	+	Missense_Mutation	SNP	A	A	G	rs143318107	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP1R3C	NM_005398	exon2	c.T569C	p.F190S	.	.	126	8	59	0	A|0.996;G|0.004	658
PPP2R3B	28227	bcgsc.ca	37	X	322193	322193	+	Missense_Mutation	SNP	C	C	T	rs3813593	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP2R3B	NM_013239	exon2	c.G457A	p.A153T	.	.	832	37	303	1	C|0.896;T|0.104	136
PPP2R5A	5525	bcgsc.ca	37	1	212515613	212515613	+	Silent	SNP	C	C	T	rs1774249	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP2R5A	NM_006243	exon4	c.C564T	p.F188F	.	.	229	10	86	0	C|0.701;T|0.299	659
PPP2R5C	5527	bcgsc.ca	37	14	102323093	102323093	+	Silent	SNP	T	T	C	rs61735777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	PPP2R5C,NS,carcinoma,0	PPP2R5C	NM_001161726	exon4	c.T330C	p.F110F	.	.	407	12	139	0	T|0.946;C|0.054	659
PPP2R5C	5527	bcgsc.ca	37	14	102391577	102391577	+	Missense_Mutation	SNP	G	G	C	rs3742424	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP2R5C	NM_001161725	exon16	c.G1636C	p.A546P	.	.	56	7	46	0	G|0.838;C|0.162	659
PPP2R5E	5529	hgsc.bcm.edu;bcgsc.ca	37	14	63881929	63881929	+	Silent	SNP	G	G	T	rs10133826	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP2R5E	NM_006246	exon5	c.C478A	p.R160R	.	.	300	12	100	0	G|0.987;T|0.013	658
PPP4R1	9989	bcgsc.ca	37	18	9562042	9562042	+	Missense_Mutation	SNP	C	C	T	rs2306134	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP4R1	NM_001042388	exon13	c.G1778A	p.S593N	.	.	257	11	117	0	C|0.730;T|0.270	227
PPP4R1L	55370	bcgsc.ca	37	20	56823258	56823258	+	RNA	SNP	C	C	T	rs6015233	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP4R1L	.	.	.	.	.	.	153	8	61	0	C|0.960;T|0.040	226
PPP4R2	151987	hgsc.bcm.edu;bcgsc.ca	37	3	73114696	73114696	+	Silent	SNP	A	A	G	rs142951081	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPP4R2	NM_174907	exon9	c.A1077G	p.L359L	.	.	437	21	210	0	A|0.997;G|0.003	227
PPWD1	23398	bcgsc.ca	37	5	64881936	64881936	+	Silent	SNP	A	A	G	rs27141	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PPWD1	NM_015342	exon10	c.A1725G	p.P575P	.	.	168	8	78	0	A|0.396;G|0.604	91
PRAMEF10	343071	bcgsc.ca	37	1	12954549	12954549	+	Missense_Mutation	SNP	C	C	T	rs80122702		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF10	NM_001039361	exon3	c.G734A	p.R245H	.	.	604	24	292	0	C|0.986;T|0.014	90
PRAMEF2	65122	bcgsc.ca	37	1	12918963	12918963	+	Missense_Mutation	SNP	G	G	T	rs9661554	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon2	c.G99T	p.R33S	.	.	327	14	104	0	G|0.891;T|0.109	68
PRAMEF2	65122	bcgsc.ca	37	1	12919064	12919064	+	Missense_Mutation	SNP	T	T	G	rs3204790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon2	c.T200G	p.V67G	.	.	255	13	79	0	T|0.824;G|0.176	68
PRAMEF2	65122	bcgsc.ca	37	1	12919079	12919079	+	Missense_Mutation	SNP	C	C	G	rs9659529	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon2	c.C215G	p.T72R	.	.	228	14	73	0	C|0.887;G|0.113	68
PRAMEF2	65122	bcgsc.ca	37	1	12919928	12919928	+	Missense_Mutation	SNP	A	A	G	rs72472698	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon3	c.A668G	p.K223R	.	.	191	14	98	0	A|0.885;G|0.115	68
PRAMEF2	65122	bcgsc.ca	37	1	12919934	12919934	+	Missense_Mutation	SNP	A	A	G	rs3204805	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon3	c.A674G	p.Y225C	.	.	190	12	98	0	A|0.846;G|0.154	68
PRAMEF2	65122	bcgsc.ca	37	1	12919963	12919963	+	Missense_Mutation	SNP	T	T	G	rs72472699	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon3	c.T703G	p.C235G	.	.	213	10	93	0	T|0.819;G|0.181	68
PRAMEF2	65122	bcgsc.ca	37	1	12921254	12921254	+	Missense_Mutation	SNP	G	G	A	rs137965043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon4	c.G1045A	p.A349T	.	.	315	12	191	0	G|0.997;A|0.003	68
PRAMEF2	65122	bcgsc.ca	37	1	12921333	12921333	+	Missense_Mutation	SNP	G	G	A	rs56145411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon4	c.G1124A	p.C375Y	.	.	294	21	158	1	G|0.772;A|0.228	68
PRAMEF2	65122	ucsc.edu;bcgsc.ca	37	1	12921110	12921110	+	Missense_Mutation	SNP	A	A	G	rs12139546	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon4	c.A901G	p.T301A	.	.	144	14	85	0	A|0.887;G|0.113	68
PRAMEF2	65122	ucsc.edu;bcgsc.ca	37	1	12921127	12921127	+	Silent	SNP	A	A	G	rs12139549	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon4	c.A918G	p.L306L	.	.	148	15	90	0	A|0.699;G|0.301	68
PRAMEF2	65122	ucsc.edu;bcgsc.ca	37	1	12921132	12921132	+	Missense_Mutation	SNP	A	A	G	rs12139550	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon4	c.A923G	p.E308G	.	.	160	15	91	0	A|0.890;G|0.110	68
PRAMEF2	65122	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12920067	12920067	+	Silent	SNP	C	C	G	rs17038709	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF2	NM_023014	exon3	c.C807G	p.L269L	.	.	217	24	96	1	C|0.887;G|0.113	68
PRAMEF4	400735	bcgsc.ca	37	1	12942961	12942961	+	Missense_Mutation	SNP	A	A	C	rs4625290	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRAMEF4	NM_001009611	exon2	c.T255G	p.D85E	.	.	336	26	117	0	A|0.895;C|0.105	45
PRB2	653247	bcgsc.ca	37	12	11546553	11546553	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRB2	NM_006248	exon3	c.C459T	p.P153P	.	.	579	27	177	1	.	22
PRB4	5545	ucsc.edu	37	12	11461549	11461549	+	Missense_Mutation	SNP	G	G	C	rs11054243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRB4	NM_002723	exon3	c.C368G	p.P123R	.	.	218	29	57	3	G|0.921;C|0.079	91
PRDM10	56980	bcgsc.ca	37	11	129772309	129772309	+	Silent	SNP	G	G	A	rs12275633	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM10	NM_020228	exon22	c.C3382T	p.L1128L	.	.	483	21	237	1	G|0.921;A|0.079	91
PRDM14	63978	bcgsc.ca	37	8	70967607	70967607	+	Silent	SNP	T	T	C	rs3750225	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM14	NM_024504	exon7	c.A1416G	p.Q472Q	.	.	345	10	62	0	T|0.294;C|0.706	93
PRDM2	7799	bcgsc.ca	37	1	14106066	14106066	+	Silent	SNP	G	G	A	rs61747662	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM2	NM_015866	exon8	c.G1776A	p.S592S	.	.	80	7	39	0	G|0.987;A|0.013	116
PRDM4	11108	bcgsc.ca	37	12	108145676	108145676	+	Silent	SNP	C	C	T	rs11830999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM4	NM_012406	exon5	c.G642A	p.T214T	.	.	78	5	48	1	C|0.942;T|0.058	154
PRDM7	11105	bcgsc.ca	37	16	90124826	90124826	+	Missense_Mutation	SNP	C	C	A	rs142279840	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM7	NM_052996	exon3	c.G449T	p.C150F	.	.	409	16	155	0	C|0.995;A|0.005	92
PRDM7	11105	hgsc.bcm.edu;bcgsc.ca	37	16	90141351	90141351	+	Missense_Mutation	SNP	C	C	T	rs201333672		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM7	NM_001098173	exon3	c.G274A	p.D92N	.	.	388	20	199	0	C|0.999;T|0.000	92
PRDM9	56979	bcgsc.ca	37	5	23527565	23527565	+	Missense_Mutation	SNP	A	A	C	rs77287813	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM9	NM_020227	exon11	c.A2368C	p.N790H	.	.	214	15	81	0	A|0.962;C|0.038	139
PRDM9	56979	bcgsc.ca	37	5	23527637	23527637	+	Missense_Mutation	SNP	A	A	C	rs61051796		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRDM9	NM_020227	exon11	c.A2440C	p.S814R	.	.	192	14	77	1	A|0.999;C|0.001	139
PRELP	5549	hgsc.bcm.edu;bcgsc.ca	37	1	203455838	203455838	+	Silent	SNP	C	C	A	rs78674036	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRELP	NM_201348	exon3	c.C978A	p.I326I	.	.	133	6	52	0	C|0.989;A|0.011	516
PREP	5550	bcgsc.ca	37	6	105821449	105821449	+	Silent	SNP	A	A	G	rs9486069	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PREP	NM_002726	exon5	c.T390C	p.Y130Y	.	.	87	8	35	0	A|0.586;G|0.414	93
PREPL	9581	bcgsc.ca	37	2	44550528	44550528	+	Missense_Mutation	SNP	T	T	C	rs75128515	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PREPL	NM_001171603	exon12	c.A1769G	p.N590S	.	.	264	8	93	0	T|0.987;C|0.013	91
PREX1	57580	bcgsc.ca	37	20	47258763	47258763	+	Missense_Mutation	SNP	C	C	T	rs16993997	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PREX1	NM_020820	exon29	c.G3718A	p.V1240I	.	.	158	12	60	0	C|0.855;N|0.001	231
PREX1	57580	ucsc.edu	37	20	47267940	47267940	+	Silent	SNP	G	G	A	rs61748372	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PREX1	NM_020820	exon22	c.C2649T	p.T883T	.	.	51	7	25	0	A|0.145;C|0.000;G|0.854	231
PRG4	10216	ucsc.edu;bcgsc.ca	37	1	186275760	186275760	+	Silent	SNP	G	G	A	rs16825150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRG4	NM_005807	exon7	c.G909A	p.K303K	.	.	56	7	46	0	G|0.820;A|0.180	91
PRICKLE1	144165	bcgsc.ca	37	12	42854205	42854205	+	Silent	SNP	A	A	G	rs3747562	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRICKLE1	NM_001144882	exon8	c.T1902C	p.S634S	.	.	277	11	81	0	A|0.550;G|0.450	518
PRICKLE4	29964	bcgsc.ca	37	6	41751219	41751219	+	Missense_Mutation	SNP	T	T	G	rs150368829	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRICKLE4	NM_013397	exon3	c.T8G	p.V3G	.	.	156	11	50	1	T|0.993;G|0.007	22
PRKAG2	51422	bcgsc.ca	37	7	151372551	151372551	+	Silent	SNP	G	G	A	rs140001300	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKAG2	NM_016203	exon4	c.C639T	p.T213T	.	.	113	6	63	0	G|0.995;A|0.005	658
PRKAR1B	5575	hgsc.bcm.edu;bcgsc.ca	37	7	635834	635834	+	Silent	SNP	C	C	T	rs79302454	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKAR1B	NM_001164760	exon7	c.G657A	p.T219T	.	.	103	8	36	0	C|0.995;T|0.005	68
PRKCB	5579	bcgsc.ca	37	16	24166130	24166130	+	Silent	SNP	T	T	C	rs432998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKCB	NM_212535	exon10	c.T1191C	p.P397P	.	.	176	12	58	0	T|0.630;C|0.370	1530
PRKCD	5580	hgsc.bcm.edu;bcgsc.ca	37	3	53218895	53218895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKCD	NM_212539	exon9	c.G793A	p.G265S	.	.	174	7	32	0	.	1378
PRKCDBP	112464	bcgsc.ca	37	11	6340416	6340416	+	Missense_Mutation	SNP	G	G	A	rs12294600	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKCDBP	NM_145040	exon2	c.C763T	p.L255F	.	.	144	8	41	0	G|0.933;A|0.067	115
PRKD3	23683	bcgsc.ca	37	2	37505105	37505105	+	Silent	SNP	T	T	G	rs10460527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKD3	NM_005813	exon8	c.A1200C	p.L400L	.	.	325	12	107	0	T|0.827;G|0.173	543
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48792051	48792051	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRKDC	NM_001081640	exon40	c.5234+1G>T	.	.	.	217	69	53	0	.	1515
PRMT10	90826	bcgsc.ca	37	4	148560210	148560210	+	Silent	SNP	G	G	A	rs34852471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRMT10	NM_138364	exon11	c.C2223T	p.D741D	.	.	155	7	73	0	G|0.976;A|0.024	91
PRMT5	10419	hgsc.bcm.edu;bcgsc.ca	37	14	23396003	23396003	+	Missense_Mutation	SNP	C	C	G	rs113488776	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRMT5	NM_006109	exon5	c.G471C	p.L157F	.	.	355	15	111	0	C|0.500;T|0.500	91
PROC	5624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128186189	128186189	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PROC	NM_000312	exon9	c.G1053A	p.E351E	.	.	74	15	49	0	.	90
PROK1	84432	bcgsc.ca	37	1	110993866	110993866	+	Missense_Mutation	SNP	A	A	C	rs113657477	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PROK1	NM_032414	exon1	c.A28C	p.M10L	.	.	212	10	71	1	A|0.995;C|0.005	90
PROKR1	10887	bcgsc.ca	37	2	68873071	68873071	+	Missense_Mutation	SNP	A	A	G	rs7570797	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PROKR1	NM_138964	exon1	c.A118G	p.S40G	.	.	424	12	115	0	A|0.839;G|0.161	523
PRPF4	9128	bcgsc.ca	37	9	116044998	116044998	+	Silent	SNP	A	A	G	rs11552582	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRPF4	NM_004697	exon4	c.A468G	p.K156K	.	.	238	8	169	0	A|0.602;G|0.398	93
PRPF4B	8899	bcgsc.ca	37	6	4052230	4052230	+	Silent	SNP	A	A	G	rs1054356	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRPF4B	NM_003913	exon10	c.A2214G	p.K738K	.	.	267	7	123	0	A|0.981;G|0.019	1308
PRPH	5630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49689157	49689157	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRPH	NM_006262	exon1	c.C174A	p.G58G	.	.	57	16	22	0	.	90
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	50099235	50099235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR12	NM_020719	exon4	c.G1643T	p.W548L	.	.	31	11	12	0	.	70
PRR14L	253143	bcgsc.ca	37	22	32081681	32081681	+	Silent	SNP	C	C	T	rs8142355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon9	c.G6288A	p.P2096P	.	.	429	18	153	1	C|0.973;T|0.027	91
PRR14L	253143	bcgsc.ca	37	22	32108475	32108475	+	Missense_Mutation	SNP	C	C	T	rs16989427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.G5350A	p.V1784I	.	.	140	5	74	0	C|0.972;T|0.028	91
PRR14L	253143	bcgsc.ca	37	22	32108824	32108824	+	Silent	SNP	T	T	A	rs131224	byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.A5001T	p.T1667T	.	.	226	11	78	0	T|0.911;A|0.089	91
PRR14L	253143	bcgsc.ca	37	22	32109879	32109879	+	Missense_Mutation	SNP	C	C	T	rs61461793		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.G3946A	p.E1316K	.	.	217	6	69	0	C|0.994;T|0.006	91
PRR14L	253143	bcgsc.ca	37	22	32110163	32110163	+	Missense_Mutation	SNP	G	G	A	rs140078	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.C3662T	p.S1221L	.	.	232	21	113	0	G|0.689;A|0.311	91
PRR14L	253143	bcgsc.ca	37	22	32110943	32110943	+	Missense_Mutation	SNP	G	G	A	rs140079	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.C2882T	p.T961I	.	.	632	23	221	0	G|0.916;A|0.084	91
PRR14L	253143	bcgsc.ca	37	22	32112461	32112461	+	Missense_Mutation	SNP	T	T	C	rs140081	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.A1364G	p.N455S	.	.	242	20	103	0	T|0.684;C|0.316	91
PRR14L	253143	hgsc.bcm.edu;bcgsc.ca	37	22	32113080	32113080	+	Silent	SNP	A	A	G	rs4296524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR14L	NM_173566	exon4	c.T745C	p.L249L	.	.	654	31	216	0	A|0.963;G|0.037	91
PRR21	643905	bcgsc.ca	37	2	240982108	240982108	+	Missense_Mutation	SNP	C	C	G	rs112152720	byfrequency;alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR21	NM_001080835	exon1	c.G292C	p.V98L	.	.	145	7	81	4	C|1.000;T|0.000	70
PRR21	643905	bcgsc.ca	37	2	240982136	240982136	+	Silent	SNP	T	T	C	rs149268542	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR21	NM_001080835	exon1	c.A264G	p.S88S	.	.	182	8	93	0	T|0.965;C|0.035	70
PRR22	163154	bcgsc.ca	37	19	5783634	5783634	+	Silent	SNP	T	T	C	rs2446210	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR22	NM_001134316	exon3	c.A624G	p.P208P	.	.	102	7	47	0	T|0.612;C|0.388	90
PRR23C	389152	bcgsc.ca	37	3	138762707	138762707	+	Silent	SNP	C	C	G	rs7636403	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR23C	NM_001134657	exon1	c.G756C	p.P252P	.	.	75	6	47	0	C|0.848;G|0.152	23
PRR3	80742	bcgsc.ca	37	6	30530245	30530245	+	Silent	SNP	T	T	C	rs2074504	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR3	NM_025263	exon4	c.T540C	p.H180H	.	.	127	5	45	0	T|0.274;C|0.726	90
PRR4	11272	bcgsc.ca	37	12	10999708	10999708	+	Missense_Mutation	SNP	T	T	C	rs1047699	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR4	NM_007244	exon3	c.A359G	p.Q120R	.	.	288	10	89	0	T|0.236;C|0.764	90
PRR5-ARHGAP8	553158	ucsc.edu;bcgsc.ca	37	22	45244930	45244930	+	Silent	SNP	C	C	T	rs2269543	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR5-ARHGAP8	NM_181334	exon13	c.C1233T	p.L411L	.	.	117	12	37	0	C|0.643;N|0.001	161
PRR5-ARHGAP8	553158	bcgsc.ca	37	22	45221404	45221404	+	Missense_Mutation	SNP	C	C	T	rs74393756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRR5-ARHGAP8	NM_181334	exon10	c.C893T	p.P298L	.	.	116	6	53	0	C|0.978;T|0.022	161
PRRC2C	23215	bcgsc.ca	37	1	171526910	171526910	+	Missense_Mutation	SNP	G	G	A	rs12025905	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015172	exon19	c.G5653A	p.A1885T	.	.	271	12	122	1	G|0.862;A|0.138	.
PRSS16	10279	bcgsc.ca	37	6	27216699	27216699	+	Missense_Mutation	SNP	G	G	T	rs5030965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRSS16	NM_005865	exon3	c.G311T	p.S104I	.	.	143	10	41	0	G|0.940;T|0.060	94
PRSS55	203074	bcgsc.ca	37	8	10383097	10383097	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRSS55	NM_001197020	exon1	c.T2A	p.M1K	.	.	89	6	47	0	.	91
PRSS55	203074	bcgsc.ca	37	8	10383226	10383226	+	Missense_Mutation	SNP	C	C	G	rs4521726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRSS55	NM_001197020	exon1	c.C131G	p.P44R	.	.	55	5	29	0	C|0.247;G|0.753	91
PRSS55	203074	bcgsc.ca	37	8	10390452	10390452	+	Missense_Mutation	SNP	C	C	T	rs4406360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRSS55	NM_001197020	exon4	c.C635T	p.A212V	.	.	94	6	35	0	C|0.668;T|0.332	91
PRSS8	5652	bcgsc.ca	37	16	31146739	31146739	+	Silent	SNP	C	C	G	rs8049043	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_002773	exon1	c.G81C	p.G27G	.	.	228	9	75	1	C|0.941;G|0.059	.
PRTN3	5657	bcgsc.ca	37	19	844020	844020	+	Missense_Mutation	SNP	G	G	A	rs351111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRTN3	NM_002777	exon3	c.G355A	p.V119I	.	.	115	10	33	0	G|0.546;A|0.454	91
PRUNE2	158471	bcgsc.ca	37	9	79318812	79318812	+	Missense_Mutation	SNP	C	C	T	rs56261747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRUNE2	NM_015225	exon9	c.G7717A	p.A2573T	.	.	473	12	161	1	C|0.964;T|0.036	157
PRUNE2	158471	bcgsc.ca	37	9	79318824	79318824	+	Missense_Mutation	SNP	T	T	C	rs41288767	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRUNE2	NM_015225	exon9	c.A7705G	p.R2569G	.	.	500	17	173	0	T|0.964;C|0.036	157
PRUNE2	158471	bcgsc.ca	37	9	79319874	79319874	+	Missense_Mutation	SNP	C	C	A	rs3739523	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRUNE2	NM_015225	exon8	c.G7316T	p.S2439I	.	.	160	11	51	0	C|0.908;A|0.092	157
PRUNE2	158471	bcgsc.ca	37	9	79321871	79321871	+	Silent	SNP	C	C	T	rs577993	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRUNE2	NM_015225	exon8	c.G5319A	p.T1773T	.	.	792	29	278	1	C|0.473;T|0.527	157
PRX	57716	bcgsc.ca	37	19	40902978	40902978	+	Silent	SNP	G	G	A	rs76960467	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRX	NM_181882	exon7	c.C1281T	p.I427I	.	.	129	8	56	0	G|0.995;A|0.005	92
PRX	57716	hgsc.bcm.edu	37	19	40902272	40902272	+	Missense_Mutation	SNP	G	G	A	rs149183991	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PRX	NM_181882	exon7	c.C1987T	p.P663S	.	.	135	7	35	0	G|1.000;A|0.000	92
PSD2	84249	bcgsc.ca	37	5	139217320	139217320	+	Silent	SNP	G	G	C	rs60035945	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSD2	NM_032289	exon12	c.G1776C	p.V592V	.	.	105	9	42	0	G|0.925;C|0.075	91
PSEN1	5663	hgsc.bcm.edu;bcgsc.ca	37	14	73637738	73637738	+	Silent	SNP	C	C	G	rs139863395	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSEN1	NM_000021	exon4	c.C321G	p.T107T	.	.	382	20	172	0	C|0.999;G|0.001	659
PSEN2	5664	bcgsc.ca	37	1	227076671	227076671	+	Silent	SNP	T	T	C	rs61730652	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSEN2	NM_012486	exon8	c.T708C	p.S236S	.	.	262	7	59	0	T|0.969;C|0.031	658
PSG10P	653492	bcgsc.ca	37	19	43358190	43358190	+	RNA	SNP	C	C	T	rs149989231		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	329	10	103	0	C|0.996;T|0.004	.
PSG10P	653492	bcgsc.ca	37	19	43358275	43358275	+	RNA	SNP	C	C	T	rs112018210	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	313	8	120	0	C|0.971;T|0.029	.
PSG10P	653492	bcgsc.ca	37	19	43358383	43358383	+	RNA	SNP	C	C	T	rs112616512	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	302	12	98	0	C|0.971;T|0.029	.
PSG1	5669	bcgsc.ca	37	19	43376103	43376103	+	Silent	SNP	G	G	A	rs113624203	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG1	NM_001184826	exon3	c.C525T	p.D175D	.	.	256	13	43	0	G|0.968;A|0.032	70
PSG1	5669	ucsc.edu;bcgsc.ca	37	19	43382397	43382397	+	Missense_Mutation	SNP	G	G	T	rs112058279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG1	NM_001184826	exon2	c.C98A	p.T33N	.	.	318	28	117	0	G|0.967;T|0.033	70
PSG2	5670	bcgsc.ca	37	19	43579642	43579642	+	Silent	SNP	A	A	G	rs1803670	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG2	NM_031246	exon3	c.T573C	p.H191H	.	.	275	22	70	0	A|0.727;G|0.273	90
PSG3	5671	hgsc.bcm.edu;bcgsc.ca	37	19	43243028	43243028	+	Missense_Mutation	SNP	G	G	C	rs138626640	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG3	NM_021016	exon2	c.C278G	p.P93R	.	.	328	16	123	0	G|1.000;C|0.000	92
PSG4	5672	bcgsc.ca	37	19	43708245	43708245	+	Missense_Mutation	SNP	G	G	C	rs3170216	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG4	NM_002780	exon2	c.A223G	p.T75A	.	.	384	13	161	0	G|0.450;C|0.550	91
PSG6	5675	bcgsc.ca	37	19	43411150	43411150	+	Silent	SNP	G	G	A	rs78024453	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG6	NM_001031850	exon5	c.C1164T	p.S388S	.	.	335	18	98	1	G|0.976;A|0.024	92
PSG6	5675	bcgsc.ca	37	19	43420290	43420290	+	Silent	SNP	A	A	G	rs76022539	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG6	NM_001031850	exon2	c.T414C	p.T138T	.	.	219	10	88	0	A|0.961;G|0.039	92
PSG6	5675	bcgsc.ca	37	19	43420368	43420368	+	Silent	SNP	T	T	C	rs73553510	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG6	NM_001031850	exon2	c.A336G	p.T112T	.	.	395	16	112	0	T|0.969;C|0.031	92
PSG6	5675	bcgsc.ca	37	19	43420405	43420405	+	Missense_Mutation	SNP	A	A	G	rs73934314	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG6	NM_001031850	exon2	c.T299C	p.V100A	.	.	415	16	130	1	A|0.982;G|0.018	92
PSG6	5675	bcgsc.ca	37	19	43420548	43420548	+	Silent	SNP	A	A	G	rs73553512	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG6	NM_001031850	exon2	c.T156C	p.L52L	.	.	291	13	107	0	A|0.967;G|0.033	92
PSG7	5676	bcgsc.ca	37	19	43429962	43429962	+	Silent	SNP	G	G	A	rs56993946	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001206650	exon4	c.C840T	p.G280G	.	.	387	15	116	0	G|0.969;A|0.031	.
PSG7	5676	bcgsc.ca	37	19	43439628	43439628	+	RNA	SNP	A	A	G	rs112354282		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	297	12	92	0	A|0.972;G|0.028	.
PSG7	5676	hgsc.bcm.edu;bcgsc.ca	37	19	43430126	43430126	+	Missense_Mutation	SNP	G	G	C	rs147075594		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001206650	exon4	c.C676G	p.Q226E	.	.	231	12	90	0	G|0.997;C|0.003	.
PSG9	5678	bcgsc.ca	37	19	43772270	43772270	+	Silent	SNP	G	G	T	rs3746296	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSG9	NM_002784	exon2	c.C96A	p.T32T	.	.	261	9	80	0	G|0.845;T|0.155	92
PSIP1	11168	bcgsc.ca	37	9	15468633	15468633	+	Missense_Mutation	SNP	T	T	A	rs61744944	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSIP1	NM_001128217	exon14	c.A1415T	p.Q472L	.	.	1018	37	353	1	T|0.971;A|0.029	658
PSKH2	85481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	87060743	87060743	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSKH2	NM_033126	exon3	c.G1106A	p.W369X	.	.	228	30	47	0	.	385
PSMD3	5709	hgsc.bcm.edu;bcgsc.ca	37	17	38140666	38140666	+	Missense_Mutation	SNP	T	T	C	rs78909252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSMD3	NM_002809	exon2	c.T340C	p.Y114H	.	.	197	9	78	0	T|0.989;C|0.011	92
PSME4	23198	bcgsc.ca	37	2	54093956	54093956	+	Silent	SNP	G	G	A	rs1049894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSME4	NM_014614	exon45	c.C5325T	p.Y1775Y	.	.	288	21	111	0	G|0.903;A|0.097	275
PSME4	23198	bcgsc.ca	37	2	54150494	54150494	+	Silent	SNP	A	A	G	rs113044182		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSME4	NM_014614	exon15	c.T1872C	p.G624G	.	.	156	5	76	0	A|0.500;G|0.500	275
PSMG2	56984	bcgsc.ca	37	18	12718622	12718622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSMG2	NM_020232	exon4	c.T395C	p.L132P	.	.	126	5	52	0	.	68
PSORS1C1	170679	bcgsc.ca	37	6	31106499	31106499	+	Missense_Mutation	SNP	G	G	A	rs9263726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSORS1C1	NM_014068	exon5	c.G110A	p.R37H	.	.	117	8	31	0	G|0.879;A|0.121	91
PSPH	5723	bcgsc.ca	37	7	56079483	56079483	+	Missense_Mutation	SNP	A	A	G	rs73343752	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSPH	NM_004577	exon8	c.T650C	p.V217A	.	.	229	8	99	0	A|0.992;G|0.008	92
PSTPIP2	9050	bcgsc.ca	37	18	43568717	43568717	+	Missense_Mutation	SNP	T	T	C	rs2276199	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSTPIP2	NM_024430	exon14	c.A964G	p.N322D	.	.	248	22	122	0	T|0.703;C|0.297	227
PSTPIP2	9050	bcgsc.ca	37	18	43573589	43573589	+	Silent	SNP	T	T	C	rs73953951	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PSTPIP2	NM_024430	exon10	c.A723G	p.Q241Q	.	.	186	7	61	0	T|0.942;C|0.058	227
PTBP2	58155	bcgsc.ca	37	1	97272456	97272456	+	Silent	SNP	A	A	G	rs6699932	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTBP2	NM_021190	exon11	c.A1113G	p.L371L	.	.	140	7	43	0	A|0.707;G|0.293	90
PTCD3	55037	bcgsc.ca	37	2	86344237	86344237	+	Silent	SNP	A	A	G	rs3764948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTCD3	NM_017952	exon6	c.A369G	p.S123S	.	.	476	14	198	0	A|0.939;G|0.061	91
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98220464	98220464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTCH1	NM_000264	exon18	c.A2999G	p.N1000S	.	.	187	78	99	0	.	3532
PTCHD2	57540	bcgsc.ca	37	1	11562913	11562913	+	Silent	SNP	C	C	T	rs60362998	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTCHD2	NM_020780	exon3	c.C1275T	p.F425F	.	.	88	6	42	0	C|0.896;T|0.104	209
PTCHD3	374308	bcgsc.ca	37	10	27687989	27687989	+	Missense_Mutation	SNP	T	T	G	rs145366269	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTCHD3	NM_001034842	exon4	c.A1538C	p.Q513P	.	.	152	6	86	0	T|0.989;G|0.011	94
PTCHD3	374308	bcgsc.ca	37	10	27702136	27702136	+	Silent	SNP	A	A	G	rs61737897	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTCHD3	NM_001034842	exon1	c.T1044C	p.D348D	.	.	154	8	73	0	A|0.963;G|0.037	94
PTDSS1	9791	bcgsc.ca	37	8	97343279	97343279	+	Missense_Mutation	SNP	C	C	A	rs7835798	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTDSS1	NM_014754	exon12	c.C1268A	p.T423N	.	.	287	9	61	0	C|0.982;A|0.018	91
PTENP1	11191	bcgsc.ca	37	9	33676027	33676027	+	RNA	SNP	C	C	A	rs855465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	116	6	62	0	T|0.062;G|0.451	.
PTER	9317	bcgsc.ca	37	10	16526554	16526554	+	Silent	SNP	A	A	G	rs34775265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTER	NM_001001484	exon3	c.A171G	p.L57L	.	.	153	5	88	0	A|0.981;G|0.019	92
PTGES3	10728	hgsc.bcm.edu;bcgsc.ca	37	12	57066778	57066778	+	Missense_Mutation	SNP	T	T	C	rs141815775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTGES3	NM_006601	exon2	c.A74G	p.K25R	.	.	264	11	104	0	T|0.997;C|0.003	90
PTGS1	5742	bcgsc.ca	37	9	125143792	125143792	+	Silent	SNP	C	C	A	rs5788	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTGS1	NM_000962	exon6	c.C639A	p.G213G	.	.	143	11	50	0	C|0.722;A|0.278	228
PTGS1	5742	ucsc.edu;bcgsc.ca	37	9	125140287	125140287	+	Silent	SNP	C	C	T	rs3842790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTGS1	NM_001271164	exon3	c.C204T	p.C68C	.	.	71	7	34	0	C|0.986;T|0.014	228
PTGS2	5743	bcgsc.ca	37	1	186645078	186645078	+	Silent	SNP	A	A	G	rs5279	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTGS2	NM_000963	exon8	c.T1209C	p.H403H	.	.	321	10	156	0	A|0.979;G|0.021	227
PTGS2	5743	bcgsc.ca	37	1	186645669	186645669	+	Silent	SNP	A	A	G	rs5278	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTGS2	NM_000963	exon7	c.T900C	p.D300D	.	.	282	9	83	0	A|0.977;G|0.023	227
PTH1R	5745	bcgsc.ca	37	3	46944274	46944274	+	Silent	SNP	T	T	C	rs1138518	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTH1R	NM_001184744	exon14	c.T1389C	p.N463N	.	.	210	12	68	0	T|0.343;C|0.657	522
PTH2R	5746	bcgsc.ca	37	2	209358034	209358034	+	Missense_Mutation	SNP	G	G	A	rs77919204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTH2R	NM_005048	exon13	c.G1303A	p.V435M	.	.	181	12	75	0	G|0.985;A|0.015	502
PTK2B	2185	bcgsc.ca	37	8	27277537	27277537	+	Silent	SNP	G	G	A	rs1030526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTK2B	NM_173174	exon8	c.G330A	p.T110T	.	.	115	11	65	0	G|0.621;A|0.379	1378
PTK2B	2185	bcgsc.ca	37	8	27293865	27293865	+	Silent	SNP	C	C	T	rs7005936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTK2B	NM_173174	exon20	c.C1341T	p.H447H	.	.	320	11	178	0	C|0.638;T|0.362	1378
PTPLA	9200	bcgsc.ca	37	10	17636309	17636309	+	Missense_Mutation	SNP	G	G	A	rs1053926	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPLA	NM_014241	exon6	c.C679T	p.H227Y	.	.	426	19	151	0	G|0.764;A|0.236	226
PTPN5	84867	ucsc.edu;bcgsc.ca	37	11	18754831	18754831	+	Missense_Mutation	SNP	T	T	C	rs200278345		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPN5	NM_032781	exon11	c.A1169G	p.E390G	.	.	56	17	25	1	.	229
PTPRB	5787	hgsc.bcm.edu;bcgsc.ca	37	12	70949064	70949064	+	Silent	SNP	A	A	G	rs201952330		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRB	NM_001109754	exon20	c.T5019C	p.I1673I	.	.	198	13	44	0	A|0.999;G|0.000	226
PTPRD	5789	bcgsc.ca	37	9	8465598	8465598	+	Silent	SNP	A	A	G	rs2281747	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRD	NM_002839	exon32	c.T3582C	p.A1194A	.	.	350	16	131	0	A|0.823;G|0.177	912
PTPRD	5789	bcgsc.ca	37	9	8492902	8492902	+	Silent	SNP	A	A	T	rs12346849	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRD	NM_002839	exon27	c.T2427A	p.G809G	.	.	166	8	44	0	A|0.941;T|0.059	912
PTPRF	5792	bcgsc.ca	37	1	44072066	44072066	+	Silent	SNP	C	C	T	rs10890266	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRF	NM_002840	exon20	c.C3639T	p.P1213P	.	.	92	6	32	0	C|0.727;N|0.000	232
PTPRH	5794	bcgsc.ca	37	19	55693244	55693244	+	Missense_Mutation	SNP	T	T	C	rs2288419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRH	NM_002842	exon20	c.A3226G	p.I1076V	.	.	109	9	37	0	T|0.668;C|0.332	138
PTPRH	5794	bcgsc.ca	37	19	55702910	55702910	+	Missense_Mutation	SNP	C	C	A	rs2288523	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRH	NM_002842	exon12	c.G2343T	p.K781N	.	.	187	15	57	0	C|0.767;A|0.233	138
PTPRH	5794	bcgsc.ca	37	19	55716742	55716742	+	Missense_Mutation	SNP	C	C	T	rs116363585	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRH	NM_002842	exon4	c.G571A	p.G191R	.	.	335	9	96	0	C|0.984;T|0.016	138
PTPRJ	5795	bcgsc.ca	37	11	48166642	48166642	+	Silent	SNP	C	C	T	rs34300475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRJ	NM_002843	exon14	c.C2877T	p.R959R	.	.	200	11	69	0	C|0.944;T|0.056	541
PTPRJ	5795	bcgsc.ca	37	11	48188872	48188872	+	Silent	SNP	G	G	A	rs12809012	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRJ	NM_002843	exon25	c.G3972A	p.A1324A	.	.	238	10	105	0	G|0.923;A|0.077	541
PTPRM	5797	bcgsc.ca	37	18	8069757	8069757	+	Silent	SNP	A	A	G	rs145226629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRM	NM_001105244	exon8	c.A1206G	p.P402P	.	.	258	12	119	0	A|0.991;G|0.009	228
PTPRN2	5799	bcgsc.ca	37	7	157414064	157414064	+	Silent	SNP	G	G	A	rs1130502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRN2	NM_002847	exon15	c.C2334T	p.A778A	.	.	67	5	34	0	T|0.000;G|0.464;A|0.536	295
PTPRN2	5799	bcgsc.ca	37	7	157931119	157931119	+	Silent	SNP	A	A	G	rs1130500	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRN2	NM_130843	exon7	c.T999C	p.A333A	.	.	108	7	43	0	A|0.625;G|0.375	295
PTPRN2	5799	hgsc.bcm.edu;bcgsc.ca	37	7	157929357	157929357	+	Missense_Mutation	SNP	A	A	T	rs7456452	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRN2	NM_130843	exon8	c.T1163A	p.L388H	.	.	164	7	51	0	A|0.995;T|0.005	295
PTPRQ	374462	bcgsc.ca	37	12	80838175	80838175	+	Missense_Mutation	SNP	C	C	T	rs60216135	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145026	exon1	c.C50T	p.T17I	.	.	250	9	72	0	C|0.899;T|0.101	.
PTPRQ	374462	bcgsc.ca	37	12	80878317	80878317	+	Missense_Mutation	SNP	G	G	A	rs57971665	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145026	exon6	c.G776A	p.R259Q	.	.	130	8	51	0	G|0.907;A|0.093	.
PTPRQ	374462	bcgsc.ca	37	12	80935411	80935411	+	Missense_Mutation	SNP	G	G	C	rs7975340	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145026	exon18	c.G2716C	p.A906P	.	.	150	7	48	0	G|0.907;C|0.093	.
PTPRQ	374462	bcgsc.ca	37	12	81007527	81007527	+	Missense_Mutation	SNP	T	T	C	rs7963963	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145026	exon26	c.T4559C	p.I1520T	.	.	190	14	119	0	T|0.920;C|0.080	.
PTPRQ	374462	bcgsc.ca	37	12	81062856	81062856	+	Missense_Mutation	SNP	G	G	A	rs1163042	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145026	exon37	c.G5747A	p.R1916K	.	.	202	7	104	0	G|0.972;A|0.028	.
PTPRS	5802	bcgsc.ca	37	19	5212380	5212380	+	Silent	SNP	C	C	T	rs1064300	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRS	NM_002850	exon31	c.G4737A	p.P1579P	.	.	126	7	41	0	C|0.669;T|0.331	357
PTPRS	5802	ucsc.edu;bcgsc.ca	37	19	5210782	5210782	+	Silent	SNP	G	G	A	rs1143698	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRS	NM_002850	exon34	c.C5269T	p.L1757L	.	.	128	16	49	0	G|0.667;A|0.333	357
PTPRU	10076	bcgsc.ca	37	1	29630455	29630455	+	Silent	SNP	C	C	T	rs2295061	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRU	NM_005704	exon17	c.C2595T	p.Y865Y	.	.	218	9	103	0	C|0.746;T|0.254	291
PTPRU	10076	bcgsc.ca	37	1	29650265	29650265	+	Silent	SNP	C	C	T	rs144077160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTPRU	NM_005704	exon29	c.C4107T	p.A1369A	.	.	86	8	52	0	C|0.997;T|0.003	291
PTS	5805	bcgsc.ca	37	11	112104245	112104245	+	Silent	SNP	T	T	C	rs59731976	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PTS	NM_000317	exon6	c.T405C	p.T135T	.	.	84	4	69	0	T|0.966;C|0.034	90
PURG	29942	bcgsc.ca	37	8	30889686	30889686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PURG	NM_013357	exon1	c.G613A	p.G205R	.	.	102	6	92	0	.	131
PUS7L	83448	bcgsc.ca;mdanderson.org	37	12	44148259	44148259	+	Missense_Mutation	SNP	T	T	C	rs1057190	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PUS7L	NM_001098614	exon2	c.A790G	p.K264E	.	.	571	53	246	0	T|0.749;C|0.251	91
PWWP2A	114825	hgsc.bcm.edu;bcgsc.ca	37	5	159519956	159519956	+	Silent	SNP	A	A	G	rs58423476	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PWWP2A	NM_001130864	exon2	c.T1701C	p.Y567Y	.	.	612	27	254	0	A|0.989;G|0.011	68
PWWP2B	170394	bcgsc.ca	37	10	134218802	134218802	+	Silent	SNP	G	G	T	rs76160300	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PWWP2B	NM_001098637	exon2	c.G798T	p.V266V	.	.	81	5	54	1	G|0.993;T|0.007	90
PXDN	7837	hgsc.bcm.edu;bcgsc.ca	37	2	1642698	1642698	+	Missense_Mutation	SNP	G	G	A	rs202081704		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PXDN	NM_012293	exon21	c.C4126T	p.R1376C	.	.	307	19	71	0	.	166
PXT1	222659	bcgsc.ca	37	6	36368282	36368282	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PXT1	NM_152990	exon4	c.C249T	p.A83A	.	.	305	14	75	1	.	90
PYGL	5836	bcgsc.ca	37	14	51376774	51376774	+	Silent	SNP	G	G	A	rs15669	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PYGL	NM_002863	exon17	c.C2016T	p.T672T	.	.	268	8	79	0	G|0.787;A|0.213	91
PYGL	5836	bcgsc.ca	37	14	51387782	51387782	+	Missense_Mutation	SNP	C	C	T	rs946616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PYGL	NM_002863	exon6	c.G664A	p.V222I	.	.	152	9	45	0	C|0.897;T|0.103	91
PYROXD2	84795	bcgsc.ca	37	10	100147060	100147060	+	Silent	SNP	A	A	G	rs4345897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PYROXD2	NM_032709	exon14	c.T1452C	p.F484F	.	.	111	5	50	0	A|0.541;G|0.459	90
PYROXD2	84795	bcgsc.ca	37	10	100148176	100148176	+	Missense_Mutation	SNP	A	A	G	rs2147896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	PYROXD2	NM_032709	exon13	c.T1382C	p.M461T	.	.	113	8	38	0	T|0.092;G|0.414	90
QRFP	347148	bcgsc.ca	37	9	133769169	133769169	+	Silent	SNP	G	G	A	rs3847193	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRFP	NM_198180	exon1	c.C57T	p.F19F	.	.	110	7	44	0	G|0.629;A|0.371	90
QRICH2	84074	bcgsc.ca	37	17	74286106	74286106	+	Silent	SNP	C	C	T	rs4789274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon5	c.G3267A	p.T1089T	.	.	129	10	50	0	C|0.569;T|0.431	94
QRICH2	84074	bcgsc.ca	37	17	74287389	74287389	+	Missense_Mutation	SNP	T	T	C	rs2279053	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.A2921G	p.H974R	.	.	145	9	33	0	T|0.545;C|0.455	94
QRICH2	84074	bcgsc.ca	37	17	74288262	74288262	+	Missense_Mutation	SNP	T	T	C	rs3826286	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.A2048G	p.H683R	.	.	182	20	51	1	T|0.559;C|0.441	94
QRICH2	84074	bcgsc.ca	37	17	74288421	74288421	+	Missense_Mutation	SNP	A	A	G	rs6501878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.T1889C	p.I630T	.	.	170	8	55	0	A|0.636;G|0.364	94
QRICH2	84074	bcgsc.ca	37	17	74289500	74289500	+	Silent	SNP	G	G	A	rs3803737	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.C810T	p.V270V	.	.	119	6	53	1	G|0.557;A|0.443	94
QRICH2	84074	bcgsc.ca	37	17	74289705	74289705	+	Missense_Mutation	SNP	A	A	G	rs6501880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.T605C	p.L202S	.	.	620	45	187	0	A|0.564;G|0.436	94
QRICH2	84074	bcgsc.ca	37	17	74289875	74289875	+	Silent	SNP	C	C	T	rs6501882	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.G435A	p.G145G	.	.	190	16	64	0	C|0.557;T|0.443	94
QRICH2	84074	bcgsc.ca	37	17	74290097	74290097	+	Silent	SNP	T	T	A	rs7225131	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.A213T	p.S71S	.	.	114	8	39	0	T|0.574;A|0.426	94
QRICH2	84074	hgsc.bcm.edu;bcgsc.ca	37	17	74288596	74288596	+	Missense_Mutation	SNP	G	G	A	rs147284874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.C1714T	p.R572C	.	.	170	10	51	0	G|0.997;A|0.003	94
QRICH2	84074	ucsc.edu;bcgsc.ca	37	17	74286082	74286082	+	Silent	SNP	C	C	T	rs4789273	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon5	c.G3291A	p.E1097E	.	.	113	14	45	0	C|0.572;T|0.428	94
QRICH2	84074	ucsc.edu;bcgsc.ca	37	17	74289908	74289908	+	Silent	SNP	A	A	G	rs6501883	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QRICH2	NM_032134	exon4	c.T402C	p.S134S	.	.	126	12	44	0	A|0.557;G|0.443	94
QSER1	79832	bcgsc.ca	37	11	32955122	32955122	+	Missense_Mutation	SNP	A	A	G	rs2297781	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QSER1	NM_001076786	exon4	c.A1931G	p.Q644R	.	.	120	6	98	1	A|0.933;G|0.067	95
QSOX1	5768	bcgsc.ca	37	1	180144485	180144485	+	Silent	SNP	G	G	A	rs10913939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	QSOX1	NM_002826	exon3	c.G396A	p.S132S	.	.	331	27	60	0	G|0.866;A|0.134	91
R3HCC1L	27291	bcgsc.ca	37	10	99969012	99969012	+	Missense_Mutation	SNP	A	A	T	rs115106223	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001256620	exon4	c.A1141T	p.T381S	.	.	132	5	46	0	A|0.997;T|0.003	.
R3HDML	140902	bcgsc.ca	37	20	42966025	42966025	+	Silent	SNP	T	T	C	rs1884612	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	R3HDML	NM_178491	exon1	c.T228C	p.S76S	.	.	108	6	38	0	T|0.730;C|0.270	90
RAB11FIP1	80223	hgsc.bcm.edu;bcgsc.ca	37	8	37732721	37732721	+	Missense_Mutation	SNP	G	G	A	rs113560526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB11FIP1	NM_025151	exon3	c.C934T	p.L312F	.	.	112	8	57	0	G|0.999;A|0.001	92
RAB15	376267	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65417070	65417070	+	Missense_Mutation	SNP	C	C	A	rs35179634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB15	NM_198686	exon5	c.G518T	p.G173V	.	.	631	62	156	0	C|0.827;A|0.173	228
RAB17	64284	bcgsc.ca	37	2	238483729	238483729	+	Missense_Mutation	SNP	A	A	G	rs2280289	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB17	NM_022449	exon6	c.T572C	p.L191P	.	.	152	8	54	0	A|0.660;G|0.340	227
RAB17	64284	bcgsc.ca	37	2	238494681	238494681	+	Silent	SNP	G	G	A	rs34052613	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB17	NM_022449	exon2	c.C117T	p.Y39Y	.	.	200	7	87	0	G|0.890;A|0.110	227
RAB17	64284	bcgsc.ca	37	2	238494742	238494742	+	Missense_Mutation	SNP	A	A	G	rs3751112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB17	NM_022449	exon2	c.T56C	p.V19A	.	.	119	5	41	0	A|0.726;G|0.274	227
RAB3A	5864	bcgsc.ca	37	19	18311214	18311214	+	Silent	SNP	T	T	C	rs142919760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB3A	NM_002866	exon3	c.A270G	p.A90A	.	.	263	13	97	0	T|0.999;C|0.001	227
RAB3B	5865	bcgsc.ca	37	1	52399021	52399021	+	Silent	SNP	A	A	G	rs2230325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB3B	NM_002867	exon4	c.T441C	p.T147T	.	.	129	7	52	0	A|0.925;G|0.075	228
RAB3D	9545	bcgsc.ca	37	19	11447886	11447886	+	Missense_Mutation	SNP	C	C	T	rs3969860	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB3D	NM_004283	exon2	c.G190A	p.V64I	.	.	211	13	73	0	C|0.943;T|0.057	653
RAB3GAP2	25782	bcgsc.ca	37	1	220344453	220344453	+	Missense_Mutation	SNP	T	T	C	rs12045447	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB3GAP2	NM_012414	exon24	c.A2587G	p.T863A	.	.	197	10	76	0	T|0.949;C|0.051	90
RAB3GAP2	25782	bcgsc.ca	37	1	220356184	220356184	+	Silent	SNP	T	T	C	rs2577126	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB3GAP2	NM_012414	exon20	c.A2088G	p.T696T	.	.	470	22	192	0	T|0.961;C|0.039	90
RAB9B	51209	bcgsc.ca	37	X	103080220	103080220	+	Silent	SNP	A	A	G	rs143179342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAB9B	NM_016370	exon3	c.T495C	p.F165F	.	.	155	13	39	0	A|0.996;G|0.004	659
RABEPK	10244	bcgsc.ca	37	9	127996046	127996046	+	Silent	SNP	A	A	G	rs599063	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RABEPK	NM_005833	exon8	c.A906G	p.P302P	.	.	226	10	120	0	A|0.881;G|0.119	91
RABGAP1L	9910	bcgsc.ca	37	1	174210622	174210622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RABGAP1L	NM_014857	exon5	c.A544T	p.I182F	.	.	271	9	93	0	.	540
RACGAP1	29127	bcgsc.ca	37	12	50384469	50384469	+	Silent	SNP	A	A	G	rs56699050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RACGAP1	NM_013277	exon18	c.T1821C	p.P607P	.	.	210	8	88	0	A|0.917;G|0.083	227
RACGAP1P	83956	bcgsc.ca	37	12	45457430	45457430	+	RNA	SNP	C	C	A	rs12313225	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	143	5	61	0	C|0.983;A|0.017	.
RAD51B	5890	bcgsc.ca	37	14	68352648	68352648	+	Missense_Mutation	SNP	T	T	G	rs34094401	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAD51B	NM_133509	exon6	c.T515G	p.L172W	.	.	218	9	91	0	T|0.975;G|0.025	660
RAD51D	5892	bcgsc.ca	37	17	33430316	33430316	+	Missense_Mutation	SNP	C	C	T	rs28363283	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAD51D	NM_001142571	exon8	c.G755A	p.R252Q	.	.	168	8	75	0	C|0.995;T|0.005	228
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51677894	51677894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAD54L2	NM_015106	exon15	c.T2354G	p.L785R	.	.	334	117	92	0	.	93
RADIL	55698	bcgsc.ca	37	7	4845312	4845312	+	Silent	SNP	T	T	G	rs2306919	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RADIL	NM_018059	exon10	c.A2175C	p.A725A	.	.	123	9	31	1	T|0.748;G|0.252	994
RAET1E	135250	bcgsc.ca	37	6	150209717	150209717	+	Missense_Mutation	SNP	C	C	G	rs2342767	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAET1E	NM_139165	exon4	c.G709C	p.V237L	.	.	110	5	49	0	C|0.523;G|0.477	90
RAET1E	135250	bcgsc.ca	37	6	150210681	150210681	+	Missense_Mutation	SNP	G	G	A	rs9371533	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAET1E	NM_139165	exon3	c.C425T	p.T142I	.	.	325	15	125	0	G|0.403;A|0.597	90
RAET1E	135250	bcgsc.ca	37	6	150210723	150210723	+	Missense_Mutation	SNP	C	C	T	rs6925151	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAET1E	NM_139165	exon3	c.G383A	p.R128H	.	.	237	8	106	0	C|0.693;T|0.307	90
RAET1G	353091	bcgsc.ca	37	6	150239330	150239330	+	Silent	SNP	C	C	T	rs17079029	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAET1G	NM_001001788	exon4	c.G822A	p.R274R	.	.	508	14	188	0	C|0.785;T|0.215	90
RAET1G	353091	bcgsc.ca	37	6	150240829	150240829	+	Missense_Mutation	SNP	G	G	C	rs9397449	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAET1G	NM_001001788	exon2	c.C209G	p.T70R	.	.	1281	35	426	0	G|0.807;C|0.193	90
RAI1	10743	bcgsc.ca	37	17	17696755	17696755	+	Missense_Mutation	SNP	C	C	A	rs11649804	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAI1	NM_030665	exon3	c.C493A	p.P165T	.	.	93	5	36	0	C|0.584;A|0.415	91
RALGAPA1	253959	bcgsc.ca	37	14	36153177	36153177	+	Missense_Mutation	SNP	T	T	C	rs2274068	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RALGAPA1	NM_194301	exon20	c.A2791G	p.T931A	.	.	237	13	120	0	T|0.603;C|0.397	138
RALGAPA2	57186	bcgsc.ca	37	20	20493514	20493514	+	Missense_Mutation	SNP	T	T	C	rs142558157		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RALGAPA2	NM_020343	exon32	c.A4499G	p.H1500R	.	.	139	5	46	0	T|0.993;C|0.007	24
RALGAPA2	57186	hgsc.bcm.edu;bcgsc.ca	37	20	20610175	20610175	+	Silent	SNP	C	C	T	rs6046970		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RALGAPA2	NM_020343	exon10	c.G1065A	p.T355T	.	.	282	12	110	0	C|0.985;T|0.015	24
RALGAPA2	57186	hgsc.bcm.edu;bcgsc.ca	37	20	20618108	20618108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RALGAPA2	NM_020343	exon8	c.A704T	p.D235V	.	.	261	11	171	0	.	24
RALGAPB	57148	ucsc.edu;bcgsc.ca	37	20	37177423	37177423	+	Silent	SNP	A	A	G	rs805548	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RALGAPB	NM_020336	exon20	c.A2994G	p.A998A	.	.	161	18	71	0	A|0.931;G|0.069	92
RALGPS2	55103	hgsc.bcm.edu;bcgsc.ca	37	1	178846676	178846676	+	Silent	SNP	A	A	G	rs115273843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RALGPS2	NM_152663	exon9	c.A651G	p.P217P	.	.	277	16	120	0	A|0.997;G|0.003	226
RANBP3L	202151	bcgsc.ca	37	5	36265559	36265559	+	Missense_Mutation	SNP	G	G	T	rs35433829	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RANBP3L	NM_001161429	exon6	c.C407A	p.A136D	.	.	258	11	94	0	G|0.982;T|0.018	91
RANBP6	26953	bcgsc.ca	37	9	6013520	6013520	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RANBP6	NM_012416	exon1	c.T2088C	p.Y696Y	.	.	93	4	61	0	.	229
RAP1GAP	5909	ucsc.edu	37	1	21926097	21926097	+	Missense_Mutation	SNP	C	C	T	rs139593866	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAP1GAP	NM_001145658	exon21	c.G1858A	p.A620T	.	.	59	4	20	0	C|0.999;T|0.001	245
RAP1GDS1	5910	bcgsc.ca	37	4	99337956	99337956	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAP1GDS1	NM_001100426	exon8	c.A827T	p.Q276L	.	.	284	10	117	0	.	660
RAPGEF1	2889	ucsc.edu	37	9	134473655	134473655	+	Silent	SNP	C	C	T	rs11243446	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAPGEF1	NM_198679	exon13	c.G2040A	p.E680E	.	.	92	10	25	0	C|0.912;T|0.088	849
RAPGEF4	11069	bcgsc.ca	37	2	173900873	173900873	+	Silent	SNP	G	G	A	rs34253418	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RAPGEF4	NM_007023	exon28	c.G2721A	p.R907R	.	.	191	11	54	0	G|0.974;A|0.026	274
RARS2	57038	bcgsc.ca	37	6	88224164	88224164	+	Silent	SNP	T	T	C	rs8802	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RARS2	NM_020320	exon20	c.A1704G	p.K568K	.	.	255	8	89	0	T|0.871;C|0.129	92
RARS2	57038	bcgsc.ca	37	6	88251642	88251642	+	Silent	SNP	G	G	A	rs75794097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RARS2	NM_020320	exon8	c.C606T	p.L202L	.	.	110	6	40	0	G|0.987;A|0.013	92
RARS2	57038	bcgsc.ca	37	6	88258338	88258338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RARS2	NM_020320	exon6	c.A422G	p.H141R	.	.	68	4	46	0	.	92
RASA2	5922	bcgsc.ca	37	3	141326602	141326602	+	Silent	SNP	T	T	C	rs295322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASA2	NM_006506	exon20	c.T2016C	p.N672N	.	.	486	43	205	0	T|0.856;C|0.144	661
RASA2	5922	bcgsc.ca	37	3	141327474	141327474	+	Silent	SNP	G	G	A	rs295323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASA2	NM_006506	exon21	c.G2160A	p.L720L	.	.	249	19	88	0	G|0.523;A|0.477	661
RASA2	5922	ucsc.edu;bcgsc.ca	37	3	141327438	141327438	+	Missense_Mutation	SNP	A	A	T	rs61750362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	RASA2,NS,carcinoma,+2	RASA2	NM_006506	exon21	c.A2124T	p.Q708H	.	.	213	21	98	0	A|0.941;T|0.059	661
RASEF	158158	bcgsc.ca	37	9	85627390	85627390	+	Missense_Mutation	SNP	C	C	A	rs140992010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASEF	NM_152573	exon5	c.G802T	p.D268Y	.	.	225	6	57	0	C|0.997;A|0.003	280
RASGRF1	5923	bcgsc.ca	37	15	79277511	79277511	+	Silent	SNP	A	A	G	rs2230518	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASGRF1	NM_002891	exon24	c.T3300C	p.N1100N	.	.	213	7	54	0	T|0.283;G|0.186;C|0.106;N|0.000;A|0.425	662
RASGRF2	5924	bcgsc.ca	37	5	80390736	80390736	+	Silent	SNP	C	C	T	rs34039392	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASGRF2	NM_006909	exon12	c.C1680T	p.D560D	.	.	108	8	42	0	C|0.946;T|0.054	725
RASGRP4	115727	bcgsc.ca	37	19	38905683	38905683	+	Silent	SNP	A	A	G	rs10412098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASGRP4	NM_170604	exon9	c.T1035C	p.G345G	.	.	133	8	62	0	A|0.657;G|0.343	660
RASSF1	11186	bcgsc.ca	37	3	50368798	50368798	+	Silent	SNP	A	A	G	rs140200776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASSF1	NM_170714	exon5	c.T855C	p.F285F	.	.	275	12	99	0	A|0.997;G|0.003	417
RASSF1	11186	broad.mit.edu	37	3	50374631	50374631	+	Silent	SNP	C	C	T	rs141835716	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASSF1	NM_170713	exon1	c.G120A	p.S40S	.	.	64	7	30	0	C|0.998;T|0.002	417
RASSF5	83593	ucsc.edu;bcgsc.ca	37	1	206758613	206758613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASSF5	NM_182663	exon5	c.A1090G	p.T364A	.	.	35	4	32	0	.	660
RASSF9	9182	hgsc.bcm.edu;bcgsc.ca	37	12	86199536	86199536	+	Silent	SNP	T	T	C	rs148047831		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RASSF9	NM_005447	exon2	c.A252G	p.R84R	.	.	270	12	85	0	T|0.994;C|0.006	23
RBAK	57786	bcgsc.ca	37	7	5105133	5105133	+	Silent	SNP	C	C	T	rs12334144	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBAK	NM_001204456	exon6	c.C2046T	p.N682N	.	.	201	15	61	0	C|0.426;G|0.000;T|0.574	653
RBFA	79863	bcgsc.ca	37	18	77798548	77798548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBFA	NM_024805	exon4	c.A422G	p.K141R	.	.	97	5	36	0	.	91
RBM11	54033	bcgsc.ca	37	21	15599466	15599466	+	Missense_Mutation	SNP	A	A	G	rs7280643	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_144770	exon5	c.A698G	p.H233R	.	.	298	13	134	0	A|0.907;G|0.093	.
RBM12	10137	bcgsc.ca	37	20	34241530	34241530	+	Missense_Mutation	SNP	T	T	C	rs17092928	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBM12	NM_001198840	exon2	c.A1715G	p.N572S	.	.	258	9	96	0	T|0.978;C|0.022	93
RBM12	10137	bcgsc.ca	37	20	34243017	34243017	+	Silent	SNP	C	C	T	rs6121015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBM12	NM_001198840	exon2	c.G228A	p.K76K	.	.	397	21	166	0	C|0.753;T|0.247	93
RBM27	54439	bcgsc.ca	37	5	145650597	145650597	+	Silent	SNP	A	A	G	rs17104362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBM27	NM_018989	exon18	c.A2772G	p.K924K	.	.	262	9	134	0	A|0.836;G|0.164	70
RBM28	55131	bcgsc.ca	37	7	127953243	127953243	+	Silent	SNP	T	T	C	rs7804796	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBM28	NM_018077	exon18	c.A2130G	p.Q710Q	.	.	669	26	170	0	T|0.881;C|0.119	92
RBM33	155435	hgsc.bcm.edu	37	7	155532429	155532430	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBM33	NM_053043	exon12	c.1758_1759insC	p.L586fs	.	.	73	11	37	0	.	23
RBM6	10180	hgsc.bcm.edu;bcgsc.ca	37	3	50006026	50006026	+	Missense_Mutation	SNP	G	G	A	rs148635727	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBM6	NM_005777	exon3	c.G1168A	p.G390S	.	.	149	8	65	0	G|0.993;A|0.007	280
RBMXL3	139804	bcgsc.ca	37	X	114426031	114426031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145346	exon1	c.T2027C	p.L676S	.	.	99	9	47	0	.	.
RBP5	83758	bcgsc.ca	37	12	7281317	7281317	+	Missense_Mutation	SNP	C	C	T	rs10963	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBP5	NM_031491	exon1	c.G55A	p.D19N	.	.	258	9	123	0	C|0.823;T|0.177	91
RBPJ	3516	bcgsc.ca	37	4	26417136	26417136	+	Silent	SNP	T	T	C	rs2270226	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RBPJ	NM_005349	exon5	c.T234C	p.S78S	.	.	607	15	198	0	T|0.487;C|0.513	659
RC3H2	54542	bcgsc.ca	37	9	125652757	125652757	+	Silent	SNP	G	G	A	rs10818759	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RC3H2	NM_018835	exon4	c.C417T	p.N139N	.	.	219	8	99	0	G|0.685;A|0.315	523
RCBTB1	55213	bcgsc.ca	37	13	50125587	50125587	+	Silent	SNP	T	T	C	rs73493297	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RCBTB1	NM_018191	exon8	c.A729G	p.A243A	.	.	234	14	89	0	T|0.981;C|0.019	91
RCBTB1	55213	bcgsc.ca	37	13	50134150	50134150	+	Silent	SNP	A	A	G	rs17073150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RCBTB1	NM_018191	exon5	c.T348C	p.I116I	.	.	202	8	49	0	A|0.751;G|0.249	91
RCBTB1	55213	bcgsc.ca	37	13	50141362	50141362	+	Silent	SNP	G	G	A	rs9562900	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RCBTB1	NM_018191	exon3	c.C54T	p.I18I	.	.	158	6	49	0	G|0.732;A|0.268	91
RCN3	57333	bcgsc.ca	37	19	50045878	50045878	+	Missense_Mutation	SNP	C	C	T	rs34654230	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RCN3	NM_020650	exon6	c.C748T	p.R250W	.	.	131	11	50	0	C|0.891;G|0.000;T|0.108	91
RCN3	57333	bcgsc.ca	37	19	50046365	50046365	+	Silent	SNP	T	T	C	rs3187346	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RCN3	NM_020650	exon7	c.T882C	p.D294D	.	.	93	6	46	0	T|0.895;C|0.105	91
RCSD1	92241	bcgsc.ca	37	1	167666449	167666449	+	Silent	SNP	C	C	T	rs138495529	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RCSD1	NM_052862	exon6	c.C588T	p.N196N	.	.	178	7	56	0	C|0.998;T|0.002	517
RDH8	50700	bcgsc.ca	37	19	10131999	10131999	+	Missense_Mutation	SNP	T	T	C	rs1644731	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RDH8	NM_015725	exon5	c.T665C	p.M222T	.	.	168	7	60	0	T|0.467;C|0.533	94
RDM1	201299	bcgsc.ca	37	17	34247218	34247218	+	Silent	SNP	G	G	A	rs2526325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RDM1	NM_145654	exon6	c.C726T	p.C242C	.	.	186	10	68	0	G|0.964;A|0.036	228
RDM1	201299	bcgsc.ca	37	17	34252537	34252537	+	Missense_Mutation	SNP	A	A	C	rs2251660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RDM1	NM_001034836	exon3	c.T381G	p.C127W	.	.	124	8	42	0	C|0.250;N|0.000	228
RECK	8434	bcgsc.ca	37	9	36052305	36052305	+	Silent	SNP	T	T	C	rs58611653	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RECK	NM_021111	exon2	c.T144C	p.R48R	.	.	373	17	120	0	T|0.985;C|0.015	93
RECQL5	9400	ucsc.edu;bcgsc.ca	37	17	73625286	73625286	+	Silent	SNP	G	G	A	rs820190	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RECQL5	NM_004259	exon16	c.C2217T	p.S739S	.	.	136	12	35	0	G|0.746;A|0.254	538
REEP3	221035	hgsc.bcm.edu;bcgsc.ca	37	10	65354554	65354554	+	Missense_Mutation	SNP	A	A	T	rs200806624		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001001330	exon3	c.A122T	p.Y41F	.	.	585	24	174	0	.	.
REG3G	130120	bcgsc.ca	37	2	79254949	79254949	+	Missense_Mutation	SNP	G	G	A	rs61740756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REG3G	NM_198448	exon5	c.G350A	p.G117E	.	.	246	11	89	0	G|0.981;A|0.019	90
REG4	83998	bcgsc.ca	37	1	120345510	120345510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REG4	NM_001159353	exon3	c.G346A	p.A116T	.	.	125	5	43	0	.	91
REL	5966	bcgsc.ca	37	2	61121570	61121570	+	Silent	SNP	A	A	G	rs6729789	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REL	NM_002908	exon3	c.A192G	p.T64T	.	.	315	8	166	0	A|0.981;G|0.019	1272
RELN	5649	bcgsc.ca	37	7	103124207	103124207	+	Silent	SNP	T	T	C	rs1062831	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RELN	NM_173054	exon62	c.A10074G	p.A3358A	.	.	201	9	82	0	T|0.807;C|0.193	574
RELN	5649	bcgsc.ca	37	7	103293165	103293165	+	Silent	SNP	C	C	T	rs41276154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RELN	NM_173054	exon14	c.G1596A	p.Q532Q	.	.	163	9	75	1	C|0.965;T|0.035	574
REN	5972	bcgsc.ca	37	1	204131186	204131186	+	Silent	SNP	T	T	G	rs5705	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REN	NM_000537	exon2	c.A204C	p.T68T	.	.	182	13	74	0	T|0.824;G|0.176	517
REP15	387849	bcgsc.ca	37	12	27849795	27849795	+	Silent	SNP	C	C	T	rs929948	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REP15	NM_001029874	exon1	c.C300T	p.S100S	.	.	111	5	35	0	C|0.409;T|0.591	91
REPS1	85021	bcgsc.ca	37	6	139266402	139266402	+	Silent	SNP	G	G	A	rs1569238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REPS1	NM_001128617	exon4	c.C582T	p.L194L	.	.	93	8	48	0	G|0.897;A|0.103	522
REV1	51455	bcgsc.ca	37	2	100055158	100055158	+	Missense_Mutation	SNP	T	T	C	rs3087399	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	REV1	NM_001037872	exon6	c.A1118G	p.N373S	.	.	159	6	84	0	T|0.866;C|0.134	92
RFC1	5981	hgsc.bcm.edu;bcgsc.ca	37	4	39306471	39306471	+	Missense_Mutation	SNP	C	C	G	rs11932767	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFC1	NM_001204747	exon15	c.G2076C	p.E692D	.	.	204	10	56	0	C|0.979;G|0.021	230
RFC4	5984	bcgsc.ca	37	3	186509517	186509517	+	Silent	SNP	G	G	A	rs187868	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFC4	NM_181573	exon8	c.C798T	p.A266A	.	.	181	11	73	0	G|0.516;A|0.484	291
RFESD	317671	bcgsc.ca	37	5	94988888	94988888	+	Missense_Mutation	SNP	C	C	T	rs141035673		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFESD	NM_001131066	exon3	c.C128T	p.A43V	.	.	276	10	82	0	C|0.995;T|0.005	68
RFESD	317671	bcgsc.ca	37	5	94989878	94989878	+	Missense_Mutation	SNP	A	A	C	rs74672963	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFESD	NM_001131066	exon4	c.A272C	p.D91A	.	.	364	20	149	1	A|0.950;C|0.050	68
RFPL2	10739	hgsc.bcm.edu	37	22	32588962	32588963	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFPL2	NM_001098527	exon4	c.483_484insG	p.A161fs	.	.	274	19	115	0	.	91
RFPL3	10738	bcgsc.ca	37	22	32756744	32756744	+	Silent	SNP	A	A	G	rs2076035	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFPL3	NM_001098535	exon2	c.A879G	p.Q293Q	.	.	420	25	166	0	A|0.498;G|0.502	91
RFPL3	10738	bcgsc.ca	37	22	32754386	32754386	+	Missense_Mutation	SNP	C	C	A	rs9621427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFPL3	NM_001098535	exon1	c.C328A	p.L110M	.	.	278	12	111	0	C|0.903;A|0.097	91
RFPL3S	10737	bcgsc.ca	37	22	32759025	32759025	+	RNA	SNP	G	G	C	rs5998440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	209	7	77	0	G|0.616;C|0.384	.
RFT1	91869	hgsc.bcm.edu;bcgsc.ca	37	3	53156464	53156464	+	Missense_Mutation	SNP	G	G	A	rs140127085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFT1	NM_052859	exon4	c.C382T	p.L128F	.	.	390	17	149	0	G|0.997;A|0.003	91
RFX4	5992	bcgsc.ca	37	12	107155131	107155131	+	Missense_Mutation	SNP	T	T	G	rs17038766	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFX4	NM_001206691	exon18	c.T2119G	p.S707A	.	.	112	8	39	0	T|0.985;G|0.015	91
RFX6	222546	bcgsc.ca	37	6	117243260	117243260	+	Silent	SNP	T	T	C	rs7764347	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFX6	NM_173560	exon13	c.T1383C	p.T461T	.	.	115	9	49	0	T|0.750;C|0.250	93
RFX6	222546	bcgsc.ca	37	6	117248218	117248218	+	Silent	SNP	T	T	C	rs611349	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RFX6	NM_173560	exon17	c.T1914C	p.G638G	.	.	174	7	47	1	T|0.757;C|0.243	93
RFX8	731220	bcgsc.ca	37	2	102018938	102018938	+	Missense_Mutation	SNP	C	C	T	rs111429443		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145664	exon11	c.G1205A	p.R402K	.	.	85	5	30	0	C|0.989;T|0.011	.
RFX8	731220	bcgsc.ca	37	2	102038936	102038936	+	Splice_Site	SNP	T	T	G	rs7589943	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145664	exon4	c.73-2A>C	.	.	.	171	10	66	0	T|0.929;G|0.071	.
RGL4	266747	bcgsc.ca	37	22	24034326	24034326	+	Missense_Mutation	SNP	C	C	T	rs17003394	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGL4	NM_153615	exon1	c.C109T	p.R37C	.	.	100	6	43	0	C|0.917;T|0.083	228
RGPD3	653489	bcgsc.ca	37	2	107040219	107040219	+	Missense_Mutation	SNP	C	C	G	rs151057482		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGPD3	NM_001144013	exon20	c.G4204C	p.V1402L	.	.	879	28	342	0	C|0.994;G|0.006	23
RGPD3	653489	bcgsc.ca	37	2	107040372	107040372	+	Missense_Mutation	SNP	C	C	G	rs3974054		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGPD3	NM_001144013	exon20	c.G4051C	p.E1351Q	.	.	673	25	300	0	.	23
RGPD3	653489	bcgsc.ca	37	2	107041569	107041569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGPD3	NM_001144013	exon20	c.A2854G	p.I952V	.	.	3840	81	1348	0	.	23
RGPD3	653489	bcgsc.ca	37	2	107073469	107073469	+	Silent	SNP	T	T	A	rs76857936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGPD3	NM_001144013	exon4	c.A363T	p.A121A	.	.	2872	66	1017	2	T|0.444;A|0.556	23
RGPD3	653489	bcgsc.ca	37	2	107073501	107073501	+	Missense_Mutation	SNP	C	C	T	rs72627454	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGPD3	NM_001144013	exon4	c.G331A	p.D111N	.	.	2845	66	1071	1	C|0.442;T|0.558	23
RGPD3	653489	bcgsc.ca	37	2	107084677	107084677	+	Missense_Mutation	SNP	C	C	T	rs114641853		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGPD3	NM_001144013	exon1	c.G68A	p.R23Q	.	.	137	6	77	0	C|0.996;G|0.004	23
RGPD8	727851	bcgsc.ca	37	2	113147751	113147751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001164463	exon20	c.T2771G	p.F924C	.	.	1047	28	370	1	.	.
RGS11	8786	bcgsc.ca	37	16	319511	319511	+	Missense_Mutation	SNP	A	A	G	rs739999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGS11	NM_183337	exon16	c.T1280C	p.M427T	.	.	148	8	61	0	A|0.722;G|0.278	227
RGS13	6003	bcgsc.ca	37	1	192628623	192628623	+	Missense_Mutation	SNP	G	G	C	rs16834603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGS13	NM_002927	exon7	c.G450C	p.L150F	.	.	310	12	130	0	G|0.955;C|0.045	226
RGS22	26166	bcgsc.ca	37	8	100975171	100975171	+	Silent	SNP	T	T	C	rs73699897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGS22	NM_015668	exon25	c.A3651G	p.L1217L	.	.	894	19	223	0	T|0.982;C|0.018	140
RGS3	5998	bcgsc.ca	37	9	116279880	116279880	+	Silent	SNP	T	T	C	rs35270441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGS3	NM_144488	exon17	c.T1734C	p.Y578Y	.	.	109	7	54	0	T|0.889;C|0.111	227
RGSL1	353299	bcgsc.ca	37	1	182509389	182509389	+	Silent	SNP	C	C	T	rs61749260	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RGSL1	NM_001137669	exon15	c.C2502T	p.T834T	.	.	211	12	102	0	C|0.972;T|0.028	226
RHBDD1	84236	bcgsc.ca	37	2	227860187	227860187	+	Silent	SNP	C	C	T	rs79028313	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RHBDD1	NM_001167608	exon9	c.C897T	p.L299L	.	.	256	11	108	0	C|0.990;T|0.010	91
RHD	6007	hgsc.bcm.edu	37	1	25627559	25627559	+	Silent	SNP	G	G	A	rs114032679	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RHD	NM_001127691	exon4	c.G609A	p.T203T	.	.	12	12	2	0	G|0.981;A|0.019	153
RHOT1	55288	bcgsc.ca	37	17	30533970	30533970	+	Silent	SNP	A	A	G	rs16967164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RHOT1	NM_001033568	exon17	c.A1458G	p.E486E	.	.	441	12	103	0	A|0.699;G|0.301	93
RIBC1	158787	ucsc.edu	37	X	53457622	53457622	+	Silent	SNP	T	T	C	rs1264013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIBC1	NM_001031745	exon7	c.T942C	p.T314T	.	.	75	8	26	0	0|0.004;A|0.003	130
RIC8B	55188	bcgsc.ca	37	12	107208790	107208790	+	Missense_Mutation	SNP	A	A	G	rs115692441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIC8B	NM_018157	exon3	c.A449G	p.K150R	.	.	156	6	71	0	A|0.992;G|0.008	91
RIF1	55183	bcgsc.ca	37	2	152320531	152320531	+	Silent	SNP	T	T	G	rs78879803	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIF1	NM_018151	exon30	c.T4497G	p.T1499T	.	.	257	10	127	0	T|0.990;G|0.010	300
RILPL1	353116	bcgsc.ca	37	12	124008074	124008074	+	Missense_Mutation	SNP	T	T	C	rs28711796	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_178314	exon2	c.A428G	p.N143S	.	.	142	8	51	0	T|0.951;C|0.049	.
RIMBP2	23504	bcgsc.ca	37	12	130929757	130929757	+	Silent	SNP	C	C	T	rs77391015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIMBP2	NM_015347	exon7	c.G588A	p.A196A	.	.	123	5	47	0	C|0.983;T|0.017	142
RIMKLA	284716	hgsc.bcm.edu;bcgsc.ca	37	1	42880228	42880228	+	Silent	SNP	C	C	T	rs113242727	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIMKLA	NM_173642	exon5	c.C759T	p.G253G	.	.	196	11	119	0	C|0.996;T|0.004	90
RIMKLB	57494	bcgsc.ca	37	12	8926015	8926015	+	Silent	SNP	C	C	T	rs2302488	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020734	exon7	c.C796T	p.L266L	.	.	398	17	161	0	C|0.911;T|0.089	.
RIMS1	22999	bcgsc.ca	37	6	72974732	72974732	+	Silent	SNP	C	C	T	rs201355521		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIMS1	NM_014989	exon20	c.C3171T	p.S1057S	.	.	89	6	39	0	C|0.999;T|0.000	144
RIMS1	22999	bcgsc.ca	37	6	73102442	73102442	+	Silent	SNP	C	C	T	rs79168210	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIMS1	NM_014989	exon31	c.C4548T	p.F1516F	.	.	300	12	104	0	C|0.835;T|0.165	144
RIMS1	22999	hgsc.bcm.edu	37	6	73100382	73100383	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIMS1	NM_014989	exon30	c.4449_4450insC	p.R1483fs	.	.	148	13	71	0	.	144
RIN2	54453	bcgsc.ca	37	20	19970705	19970705	+	Silent	SNP	C	C	T	rs2076584	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIN2	NM_001242581	exon9	c.C1965T	p.H655H	.	.	159	7	58	0	C|0.570;T|0.430	660
RIN3	79890	bcgsc.ca	37	14	93118674	93118674	+	Missense_Mutation	SNP	G	G	A	rs74074811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RIN3	NM_024832	exon6	c.G1280A	p.R427Q	.	.	115	6	65	0	G|0.954;A|0.046	522
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	73814140	73814140	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RLIM	NM_016120	exon4	c.253+1G>T	.	.	.	126	80	46	0	.	228
RLN3	117579	bcgsc.ca	37	19	14139196	14139196	+	Silent	SNP	C	C	T	rs79665112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RLN3	NM_080864	exon1	c.C180T	p.H60H	.	.	123	6	34	0	C|0.941;T|0.059	90
RMND1	55005	bcgsc.ca	37	6	151766500	151766500	+	Silent	SNP	T	T	C	rs61739876	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RMND1	NM_017909	exon2	c.A447G	p.K149K	.	.	187	9	93	1	T|0.910;C|0.090	90
RNASE6	6039	hgsc.bcm.edu;bcgsc.ca	37	14	21249986	21249986	+	Missense_Mutation	SNP	C	C	T	rs114480851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNASE6	NM_005615	exon2	c.C128T	p.P43L	.	.	331	14	116	0	C|0.998;T|0.002	90
RNASE9	390443	bcgsc.ca	37	14	21026773	21026773	+	Splice_Site	SNP	C	C	T	rs891297	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNASE9	NM_001110361	exon5	c.1+1G>A	.	.	.	141	5	48	0	C|0.689;T|0.311	70
RNASEL	6041	bcgsc.ca	37	1	182554557	182554557	+	Missense_Mutation	SNP	C	C	T	rs486907	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNASEL	NM_021133	exon2	c.G1385A	p.R462Q	.	.	365	21	141	0	C|0.737;T|0.263	336
RNF103-CHMP3	100526767	bcgsc.ca	37	2	86756381	86756381	+	Silent	SNP	T	T	G	rs11548929	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001198954	exon5	c.A333C	p.A111A	.	.	264	9	76	0	T|0.572;G|0.160;C|0.040;A|0.229	.
RNF148	378925	hgsc.bcm.edu;bcgsc.ca	37	7	122342001	122342001	+	Silent	SNP	T	T	C	rs149475218		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF148	NM_198085	exon1	c.A804G	p.Q268Q	.	.	313	19	139	0	T|0.994;C|0.006	204
RNF151	146310	bcgsc.ca	37	16	2018554	2018554	+	Silent	SNP	G	G	T	rs114840677	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF151	NM_174903	exon4	c.G366T	p.V122V	.	.	119	6	28	0	G|0.970;T|0.030	22
RNF151	146310	bcgsc.ca	37	16	2018578	2018578	+	Missense_Mutation	SNP	C	C	G	rs45488492	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF151	NM_174903	exon4	c.C390G	p.H130Q	.	.	84	6	28	0	C|0.963;G|0.037	22
RNF152	220441	bcgsc.ca	37	18	59483202	59483202	+	Silent	SNP	G	G	C	rs4538107	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF152	NM_173557	exon2	c.C495G	p.T165T	.	.	167	6	78	0	G|0.959;C|0.041	226
RNF168	165918	bcgsc.ca	37	3	196199434	196199434	+	Silent	SNP	C	C	T	rs35405598	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF168	NM_152617	exon6	c.G972A	p.E324E	.	.	483	14	165	0	C|0.971;T|0.029	90
RNF181	51255	bcgsc.ca	37	2	85824251	85824251	+	Missense_Mutation	SNP	T	T	C	rs6643	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF181	NM_016494	exon4	c.T352C	p.Y118H	.	.	213	17	87	0	T|0.797;C|0.203	68
RNF20	56254	bcgsc.ca	37	9	104314989	104314989	+	Silent	SNP	C	C	A	rs139776458	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF20	NM_019592	exon13	c.C1855A	p.R619R	.	.	379	13	180	0	C|0.999;A|0.001	231
RNF207	388591	ucsc.edu;bcgsc.ca	37	1	6278414	6278414	+	Missense_Mutation	SNP	A	A	G	rs709209	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF207	NM_207396	exon17	c.A1718G	p.N573S	.	.	90	10	44	0	A|0.587;G|0.413	514
RNF213	57674	bcgsc.ca	37	17	78261730	78261730	+	Silent	SNP	G	G	A	rs17853714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF213	NM_001256071	exon4	c.G378A	p.P126P	.	.	163	8	48	0	G|0.861;A|0.139	577
RNF213	57674	bcgsc.ca	37	17	78261805	78261805	+	Silent	SNP	A	A	G	rs7215243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF213	NM_001256071	exon4	c.A453G	p.P151P	.	.	70	10	36	0	A|0.731;G|0.269	577
RNF213	57674	bcgsc.ca	37	17	78282833	78282833	+	Silent	SNP	C	C	G	rs147119464	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF213	NM_001256071	exon14	c.C2517G	p.A839A	.	.	156	6	58	0	C|1.000;G|0.000	577
RNF213	57674	bcgsc.ca	37	17	78325483	78325483	+	Splice_Site	SNP	A	A	G	rs114046339	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF213	NM_001256071	exon32	c.10185-2A>G	.	.	.	218	8	106	0	A|0.998;G|0.002	577
RNF215	200312	bcgsc.ca	37	22	30776095	30776095	+	Missense_Mutation	SNP	C	C	T	rs5749088	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF215	NM_001017981	exon7	c.G964A	p.A322T	.	.	187	8	41	0	C|0.824;T|0.176	68
RNF216	54476	bcgsc.ca	37	7	5792583	5792583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF216	NM_207111	exon3	c.T95C	p.I32T	.	.	95	4	39	0	.	274
RNF220	55182	bcgsc.ca	37	1	45092025	45092025	+	Silent	SNP	C	C	A	rs76104973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF220	NM_018150	exon5	c.C861A	p.P287P	.	.	139	9	37	0	C|0.978;A|0.022	228
RNF31	55072	bcgsc.ca	37	14	24617238	24617238	+	Silent	SNP	C	C	T	rs2273913	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF31	NM_017999	exon2	c.C246T	p.Y82Y	.	.	196	12	68	0	C|0.693;T|0.307	90
RNF39	80352	bcgsc.ca	37	6	30043486	30043486	+	Silent	SNP	T	T	C	rs11758516	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF39	NM_025236	exon1	c.A81G	p.K27K	.	.	291	9	98	0	T|0.897;C|0.103	226
RNF6	6049	bcgsc.ca	37	13	26788151	26788151	+	Missense_Mutation	SNP	C	C	T	rs17083436	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF6	NM_183043	exon5	c.G1868A	p.S623N	.	.	248	11	112	0	C|0.940;T|0.060	228
RNF8	9025	bcgsc.ca	37	6	37349033	37349033	+	Silent	SNP	G	G	A	rs2284922	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNF8	NM_003958	exon7	c.G1344A	p.T448T	.	.	196	7	69	0	G|0.535;A|0.465	227
RNH1	6050	bcgsc.ca	37	11	494942	494942	+	Silent	SNP	G	G	C	rs7983	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNH1	NM_203383	exon10	c.C1239G	p.A413A	.	.	208	18	89	0	G|0.508;C|0.492	90
RNLS	55328	bcgsc.ca	37	10	90341414	90341414	+	Missense_Mutation	SNP	T	T	C	rs79981780	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNLS	NM_018363	exon3	c.A277G	p.I93V	.	.	312	15	137	0	T|0.998;C|0.002	91
RNPEPL1	57140	bcgsc.ca	37	2	241513972	241513972	+	Silent	SNP	C	C	T	rs11557337	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RNPEPL1	NM_018226	exon6	c.C1215T	p.D405D	.	.	155	12	44	0	C|0.915;T|0.085	154
RNR2	6053	broad.mit.edu	37	MT	3036	3036	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	381	353	538	1	.	.
RNU6-71	100873774	bcgsc.ca	37	6	56468074	56468074	+	RNA	SNP	C	C	T	rs79922686	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	275	14	63	0	C|0.976;T|0.024	.
RNU6-71	100873774	bcgsc.ca	37	6	56470471	56470471	+	RNA	SNP	A	A	C	rs60577627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	155	8	60	0	A|0.979;C|0.021	.
RNU6-71	100873774	bcgsc.ca	37	6	56470551	56470551	+	RNA	SNP	T	T	A	rs13194995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	170	7	67	0	T|0.721;A|0.279	.
RNU6-71	100873774	bcgsc.ca	37	6	56470690	56470690	+	RNA	SNP	G	G	A	rs13209548	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	218	8	106	0	G|0.615;A|0.385	.
RNU6-71	100873774	bcgsc.ca	37	6	56471402	56471402	+	RNA	SNP	G	G	A	rs9382658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	241	6	88	0	G|0.625;A|0.375	.
RNU6-71	100873774	bcgsc.ca	37	6	56471995	56471995	+	RNA	SNP	C	C	T	rs16888055	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	390	17	129	0	C|0.674;N|0.000	.
RNU6-71	100873774	bcgsc.ca	37	6	56472288	56472288	+	RNA	SNP	G	G	A	rs80018189	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	96	5	41	0	G|0.978;A|0.022	.
RNU6-71	100873774	bcgsc.ca	37	6	56473731	56473731	+	RNA	SNP	G	G	T	rs183254151	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	181	14	96	0	G|0.999;T|0.000	.
ROBO1	6091	bcgsc.ca	37	3	78717343	78717343	+	Silent	SNP	C	C	T	rs2271151	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROBO1	NM_002941	exon13	c.G1740A	p.S580S	.	.	289	20	106	0	C|0.699;T|0.301	67
ROBO1	6091	bcgsc.ca	37	3	78766544	78766544	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROBO1	NM_002941	exon7	c.G798A	p.K266K	.	.	180	7	73	0	.	67
ROBO3	64221	bcgsc.ca	37	11	124747837	124747837	+	Silent	SNP	G	G	A	rs7933204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROBO3	NM_022370	exon21	c.G2991A	p.A997A	.	.	96	5	36	0	G|0.371;A|0.629	113
ROBO4	54538	bcgsc.ca	37	11	124766128	124766128	+	Silent	SNP	A	A	G	rs4078313	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROBO4	NM_019055	exon4	c.T645C	p.H215H	.	.	210	9	43	0	A|0.538;G|0.462	92
ROM1	6094	bcgsc.ca	37	11	62381808	62381808	+	Silent	SNP	G	G	C	rs1801144	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROM1	NM_000327	exon2	c.G669C	p.R223R	.	.	117	8	36	0	G|0.727;C|0.273	92
ROS1	6098	bcgsc.ca	37	6	117650532	117650532	+	Missense_Mutation	SNP	C	C	G	rs12664076	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROS1	NM_002944	exon32	c.G5326C	p.D1776H	.	.	413	16	133	0	C|0.979;G|0.021	1353
ROS1	6098	bcgsc.ca	37	6	117725578	117725578	+	Silent	SNP	T	T	A	rs2243378	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ROS1	NM_002944	exon5	c.A303T	p.L101L	.	.	120	7	77	1	T|0.459;A|0.541	1353
RP1L1	94137	hgsc.bcm.edu;bcgsc.ca	37	8	10464890	10464890	+	Missense_Mutation	SNP	C	C	G	rs80000074		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RP1L1	NM_178857	exon4	c.G6718C	p.E2240Q	.	.	95	7	56	0	C|0.987;G|0.013	139
RP1L1	94137	hgsc.bcm.edu;bcgsc.ca	37	8	10464934	10464934	+	Missense_Mutation	SNP	G	G	A	rs74968439		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RP1L1	NM_178857	exon4	c.C6674T	p.P2225L	.	.	113	10	62	0	G|0.987;A|0.013	139
RP1L1	94137	ucsc.edu;bcgsc.ca	37	8	10466482	10466482	+	Missense_Mutation	SNP	G	G	A	rs13267180	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RP1L1	NM_178857	exon4	c.C5126T	p.A1709V	.	.	101	9	41	0	G|0.615;A|0.385	139
RPA1	6117	bcgsc.ca	37	17	1795180	1795180	+	Silent	SNP	T	T	C	rs2230931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPA1	NM_002945	exon15	c.T1605C	p.S535S	.	.	125	8	43	0	T|0.752;C|0.248	651
RPAP2	79871	bcgsc.ca	37	1	92789305	92789305	+	Silent	SNP	T	T	C	rs12065163	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPAP2	NM_024813	exon8	c.T828C	p.D276D	.	.	138	6	101	0	T|0.947;C|0.053	91
RPGR	6103	bcgsc.ca	37	X	38144856	38144856	+	Silent	SNP	G	G	A	rs12687163	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPGR	NM_001034853	exon15	c.C3396T	p.N1132N	.	.	371	25	138	0	G|0.844;A|0.156	131
RPGRIP1L	23322	bcgsc.ca	37	16	53671754	53671754	+	Missense_Mutation	SNP	C	C	T	rs2111119	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPGRIP1L	NM_015272	exon21	c.G3073A	p.G1025S	.	.	210	10	93	0	C|0.869;T|0.131	91
RPGRIP1L	23322	bcgsc.ca	37	16	53698860	53698860	+	Missense_Mutation	SNP	T	T	C	rs79708859	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPGRIP1L	NM_001127897	exon10	c.A1165G	p.I389V	.	.	81	5	38	0	T|0.994;C|0.006	91
RPGRIP1L	23322	bcgsc.ca	37	16	53720436	53720436	+	Missense_Mutation	SNP	C	C	T	rs61747071	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPGRIP1L	NM_001127897	exon6	c.G685A	p.A229T	.	.	181	13	81	0	C|0.953;T|0.047	91
RPH3A	22895	bcgsc.ca	37	12	113325629	113325629	+	Silent	SNP	T	T	C	rs4141253	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPH3A	NM_001143854	exon17	c.T1464C	p.F488F	.	.	80	6	34	0	T|0.535;C|0.465	519
RPL4	6124	hgsc.bcm.edu;bcgsc.ca	37	15	66793310	66793310	+	Silent	SNP	G	G	A	rs73471768	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPL4	NM_000968	exon7	c.C810T	p.A270A	.	.	388	16	158	0	G|0.992;A|0.008	90
RPL5	6125	bcgsc.ca	37	1	93299193	93299193	+	Silent	SNP	G	G	A	rs58263806	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPL5	NM_000969	exon3	c.G165A	p.V55V	.	.	224	18	88	0	G|0.977;A|0.023	90
RPP38	10557	bcgsc.ca	37	10	15145917	15145917	+	Missense_Mutation	SNP	A	A	C	rs12249258	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPP38	NM_183005	exon3	c.A604C	p.S202R	.	.	60	5	55	0	A|0.946;C|0.054	91
RPRD1B	58490	bcgsc.ca	37	20	36668874	36668874	+	Silent	SNP	G	G	A	rs2273353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPRD1B	NM_021215	exon2	c.G189A	p.A63A	.	.	388	32	165	0	G|0.747;A|0.253	91
RPS21	6227	bcgsc.ca	37	20	60962943	60962943	+	Silent	SNP	T	T	C	rs56330879		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS21	NM_001024	exon4	c.T159C	p.Y53Y	.	.	271	14	109	0	.	90
RPS24	6229	bcgsc.ca	37	10	79799959	79799959	+	Missense_Mutation	SNP	C	C	A	rs7899453	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS24	NM_001142282	exon5	c.C391A	p.Q131K	.	.	386	13	169	0	C|0.923;A|0.077	91
RPS25	6230	bcgsc.ca	37	11	118886603	118886603	+	Silent	SNP	G	G	A	rs149825323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS25	NM_001028	exon4	c.C330T	p.T110T	.	.	242	10	79	0	G|0.976;A|0.024	90
RPS27A	6233	bcgsc.ca	37	2	55461991	55461991	+	Silent	SNP	A	A	C	rs2230613	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS27A	NM_001135592	exon5	c.A214C	p.R72R	.	.	325	11	82	0	A|0.980;C|0.020	91
RPS6KA1	6195	bcgsc.ca	37	1	26887592	26887592	+	Silent	SNP	T	T	C	rs1064196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS6KA1	NM_001006665	exon15	c.T1425C	p.Y475Y	.	.	144	7	43	0	T|0.604;C|0.396	510
RPS6KA2	6196	bcgsc.ca	37	6	166844062	166844062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS6KA2	NM_001006932	exon17	c.A1484G	p.E495G	.	.	119	5	45	0	.	1405
RPS6KA5	9252	bcgsc.ca	37	14	91386577	91386577	+	Missense_Mutation	SNP	T	T	C	rs140126863	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS6KA5	NM_182398	exon7	c.A779G	p.E260G	.	.	495	14	181	0	T|1.000;C|0.000	979
RPS6KL1	83694	bcgsc.ca	37	14	75388183	75388183	+	Missense_Mutation	SNP	C	C	T	rs7156590	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RPS6KL1	NM_031464	exon2	c.G62A	p.R21Q	.	.	142	8	32	0	C|0.654;T|0.346	359
RRBP1	6238	bcgsc.ca	37	20	17595466	17595466	+	Silent	SNP	C	C	A	rs139306091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RRBP1	NM_004587	exon24	c.G2811T	p.L937L	.	.	178	8	40	0	C|0.996;A|0.004	92
RRP1	8568	bcgsc.ca	37	21	45217929	45217929	+	Silent	SNP	T	T	C	rs2838379	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RRP1	NM_003683	exon8	c.T759C	p.G253G	.	.	183	15	63	0	T|0.670;C|0.330	90
RRP36	88745	bcgsc.ca	37	6	42995211	42995211	+	Silent	SNP	A	A	G	rs1138141	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RRP36	NM_033112	exon6	c.A639G	p.K213K	.	.	160	8	66	0	A|0.725;G|0.275	90
RSBN1L	222194	bcgsc.ca	37	7	77365770	77365770	+	Silent	SNP	A	A	G	rs3764824	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RSBN1L	NM_198467	exon2	c.A630G	p.E210E	.	.	238	14	180	0	A|0.465;G|0.535	91
RSPH10B	222967	bcgsc.ca	37	7	5966094	5966094	+	Missense_Mutation	SNP	C	C	T	rs143707249	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RSPH10B	NM_173565	exon21	c.G2518A	p.V840M	.	.	1119	31	411	0	C|1.000;T|0.000	23
RSPH10B	222967	bcgsc.ca	37	7	5983080	5983080	+	Missense_Mutation	SNP	G	G	A	rs148442827		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RSPH10B	NM_173565	exon15	c.C1633T	p.R545W	.	.	1147	32	459	0	G|1.000;A|0.000	23
RSPH4A	345895	bcgsc.ca	37	6	116951678	116951678	+	Missense_Mutation	SNP	A	A	C	rs9488991	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RSPH4A	NM_001010892	exon5	c.A1879C	p.N627H	.	.	238	15	95	0	A|0.887;C|0.113	90
RSPH9	221421	bcgsc.ca	37	6	43618147	43618147	+	Missense_Mutation	SNP	C	C	T	rs35110984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RSPH9	NM_001193341	exon2	c.C263T	p.A88V	.	.	118	6	55	0	C|0.993;T|0.007	92
RSPH9	221421	bcgsc.ca	37	6	43638636	43638636	+	Missense_Mutation	SNP	G	G	A	rs16896629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RSPH9	NM_001193341	exon6	c.G833A	p.R278H	.	.	188	6	80	0	G|0.908;A|0.092	92
RTKN	6242	bcgsc.ca	37	2	74657460	74657460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTKN	NM_001015055	exon5	c.T464C	p.L155P	.	.	146	5	52	0	.	91
RTL1	388015	bcgsc.ca	37	14	101347090	101347090	+	Missense_Mutation	SNP	C	C	T	rs73349352		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTL1	NM_001134888	exon1	c.G4036A	p.E1346K	.	.	221	9	75	1	C|0.966;T|0.034	46
RTL1	388015	ucsc.edu	37	14	101350298	101350298	+	Silent	SNP	T	T	C	rs3825569	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTL1	NM_001134888	exon1	c.A828G	p.E276E	.	.	78	8	22	0	T|0.456;C|0.544	46
RTN1	6252	bcgsc.ca	37	14	60194333	60194333	+	Missense_Mutation	SNP	T	T	C	rs35707243	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTN1	NM_021136	exon3	c.A1069G	p.I357V	.	.	229	11	68	0	T|0.983;C|0.017	516
RTP1	132112	bcgsc.ca	37	3	186917751	186917751	+	Missense_Mutation	SNP	C	C	G	rs6764714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTP1	NM_153708	exon2	c.C685G	p.Q229E	.	.	343	26	144	0	C|0.544;G|0.456	155
RTTN	25914	bcgsc.ca	37	18	67687860	67687860	+	Silent	SNP	T	T	C	rs2304378	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTTN	NM_173630	exon45	c.A6144G	p.V2048V	.	.	160	8	55	0	T|0.826;C|0.174	141
RTTN	25914	bcgsc.ca	37	18	67872497	67872497	+	Missense_Mutation	SNP	A	A	G	rs201689582		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RTTN	NM_173630	exon2	c.T86C	p.I29T	.	.	91	5	36	0	A|0.999;G|0.000	141
RUFY4	285180	bcgsc.ca	37	2	218940396	218940396	+	Missense_Mutation	SNP	A	A	G	rs77844068	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RUFY4	NM_198483	exon9	c.A1181G	p.Q394R	.	.	243	12	56	0	A|0.972;G|0.028	46
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93023262	93023262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RUNX1T1	NM_001198679	exon5	c.C703A	p.P235T	.	.	367	131	82	0	.	1196
RUSC2	9853	bcgsc.ca	37	9	35547141	35547141	+	Missense_Mutation	SNP	C	C	A	rs79315294	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RUSC2	NM_014806	exon2	c.C623A	p.P208H	.	.	106	7	44	0	C|0.989;A|0.011	91
RYR1	6261	bcgsc.ca	37	19	38995998	38995998	+	Missense_Mutation	SNP	C	C	G	rs35180584	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR1	NM_001042723	exon53	c.C8360G	p.T2787S	.	.	132	6	51	0	C|0.990;G|0.010	100
RYR2	6262	bcgsc.ca	37	1	237659895	237659895	+	Silent	SNP	A	A	G	rs116098815	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR2	NM_001035	exon20	c.A2046G	p.T682T	.	.	163	11	81	0	A|0.993;G|0.007	158
RYR2	6262	bcgsc.ca	37	1	237777828	237777828	+	Silent	SNP	A	A	G	rs3820216	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR2	NM_001035	exon37	c.A5400G	p.K1800K	.	.	149	5	58	0	A|0.931;G|0.069	158
RYR2	6262	ucsc.edu;bcgsc.ca	37	1	237778084	237778084	+	Missense_Mutation	SNP	G	G	A	rs3766871	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR2	NM_001035	exon37	c.G5656A	p.G1886S	.	.	128	12	49	0	G|0.916;A|0.084	158
RYR3	6263	bcgsc.ca	37	15	33855175	33855175	+	Silent	SNP	C	C	T	rs16972317	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR3	NM_001243996	exon11	c.C1110T	p.D370D	.	.	138	10	58	0	C|0.960;T|0.040	520
RYR3	6263	bcgsc.ca	37	15	33873751	33873751	+	Missense_Mutation	SNP	G	G	A	rs2077268	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR3	NM_001243996	exon14	c.G1480A	p.V494I	.	.	200	9	71	0	G|0.846;A|0.154	520
RYR3	6263	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34113536	34113536	+	Silent	SNP	A	A	G	rs2288614	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	RYR3	NM_001036	exon79	c.A10881G	p.A3627A	.	.	327	38	113	0	A|0.292;G|0.708	520
S100A2	6273	bcgsc.ca	37	1	153534027	153534027	+	Missense_Mutation	SNP	C	C	T	rs1047325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	S100A2	NM_005978	exon3	c.G182A	p.S61N	.	.	254	20	91	0	C|0.841;T|0.159	651
S100A4	6275	bcgsc.ca	37	1	153516307	153516307	+	Silent	SNP	G	G	A	rs9003	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	S100A4	NM_002961	exon3	c.C234T	p.F78F	.	.	317	10	89	0	G|0.986;A|0.014	90
S100A7A	338324	bcgsc.ca	37	1	153391729	153391729	+	Missense_Mutation	SNP	G	G	A	rs56232841		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	S100A7A	NM_176823	exon3	c.G250A	p.A84T	.	.	356	13	150	0	.	91
S100A7L2	645922	bcgsc.ca	37	1	153409642	153409642	+	Silent	SNP	C	C	T	rs3014830	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	S100A7L2	NM_001045479	exon3	c.G231A	p.K77K	.	.	204	9	84	0	C|0.991;T|0.009	69
SACS	26278	bcgsc.ca	37	13	23909142	23909142	+	Missense_Mutation	SNP	T	T	C	rs11839380	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SACS	NM_014363	exon10	c.A8873G	p.K2958R	.	.	114	6	75	0	T|0.974;C|0.026	298
SAGE1	55511	bcgsc.ca	37	X	134990000	134990000	+	Missense_Mutation	SNP	C	C	T	rs41301507	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAGE1	NM_018666	exon10	c.C1159T	p.H387Y	.	.	260	15	70	0	C|0.937;T|0.063	133
SALL3	27164	bcgsc.ca	37	18	76754871	76754871	+	Silent	SNP	G	G	T	rs2615613	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SALL3	NM_171999	exon2	c.G2880T	p.A960A	.	.	72	5	41	0	G|0.905;T|0.095	155
SALL4	57167	bcgsc.ca	37	20	50405502	50405502	+	Silent	SNP	C	C	G	rs17802735	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SALL4	NM_020436	exon3	c.G2640C	p.S880S	.	.	125	6	36	0	C|0.916;G|0.084	92
SALL4	57167	ucsc.edu	37	20	50407966	50407966	+	Silent	SNP	C	C	T	rs13038893	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SALL4	NM_020436	exon2	c.G1056A	p.A352A	.	.	120	13	26	0	C|0.725;T|0.275	92
SAMD13	148418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	84791363	84791363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAMD13	NM_001010971	exon3	c.G139T	p.V47L	.	.	239	75	95	0	.	226
SAMD1	90378	bcgsc.ca	37	19	14200109	14200109	+	Missense_Mutation	SNP	T	T	A	rs8062	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_138352	exon2	c.A702T	p.E234D	.	.	239	8	53	0	T|0.072;C|0.002;A|0.926	.
SAMD9	54809	bcgsc.ca	37	7	92734983	92734983	+	Missense_Mutation	SNP	A	A	G	rs6969691	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAMD9	NM_001193307	exon2	c.T428C	p.I143T	.	.	473	21	186	1	A|0.818;G|0.182	140
SAMD9	54809	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92734451	92734451	+	Silent	SNP	A	A	G	rs6965201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAMD9	NM_001193307	exon2	c.T960C	p.Y320Y	.	.	461	46	157	1	A|0.524;G|0.476	140
SAMD9L	219285	bcgsc.ca	37	7	92762681	92762681	+	Silent	SNP	A	A	G	rs1029357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAMD9L	NM_152703	exon5	c.T2604C	p.A868A	.	.	234	11	71	0	A|0.773;G|0.227	94
SAMD9L	219285	bcgsc.ca	37	7	92764982	92764982	+	Silent	SNP	C	C	T	rs1133906	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAMD9L	NM_152703	exon5	c.G303A	p.Q101Q	.	.	1281	43	656	1	C|0.675;T|0.325	94
SAP18	10284	bcgsc.ca	37	13	21720956	21720956	+	Silent	SNP	C	C	T	rs4620	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SAP18	NM_005870	exon3	c.C252T	p.T84T	.	.	343	13	164	1	C|0.587;T|0.413	226
SARDH	1757	bcgsc.ca	37	9	136536793	136536793	+	Silent	SNP	C	C	G	rs2519123	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SARDH	NM_007101	exon18	c.G2190C	p.V730V	.	.	121	10	46	0	C|0.518;G|0.482	90
SART3	9733	bcgsc.ca	37	12	108917330	108917330	+	Silent	SNP	G	G	A	rs34709181	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SART3	NM_014706	exon19	c.C2796T	p.N932N	.	.	123	11	43	0	G|0.982;A|0.018	91
SASH1	23328	bcgsc.ca	37	6	148792617	148792617	+	Silent	SNP	A	A	G	rs1883625	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SASH1	NM_015278	exon6	c.A492G	p.G164G	.	.	449	16	307	1	A|0.811;G|0.189	90
SASS6	163786	bcgsc.ca	37	1	100573489	100573489	+	Silent	SNP	G	G	A	rs35245591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SASS6	NM_194292	exon9	c.C933T	p.H311H	.	.	439	14	107	0	G|0.963;A|0.037	70
SATB1	6304	bcgsc.ca	37	3	18427924	18427924	+	Silent	SNP	G	G	T	rs2229261	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SATB1	NM_002971	exon8	c.C1386A	p.P462P	.	.	210	11	53	0	T|0.589;G|0.411;A|0.000	228
SBF1	6305	bcgsc.ca	37	22	50906108	50906108	+	Silent	SNP	G	G	A	rs6010103	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SBF1	NM_002972	exon4	c.C291T	p.R97R	.	.	171	8	48	0	G|0.900;A|0.100	90
SBK2	646643	bcgsc.ca	37	19	56047475	56047475	+	Missense_Mutation	SNP	C	C	T	rs200184531		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SBK2	NM_001101401	exon2	c.G187A	p.E63K	.	.	116	5	41	0	C|0.998;T|0.002	68
SBSPON	157869	bcgsc.ca	37	8	74005131	74005131	+	Missense_Mutation	SNP	A	A	G	rs59331088	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_153225	exon1	c.T172C	p.F58L	.	.	192	12	45	0	A|0.660;G|0.340	.
SCAF11	9169	bcgsc.ca	37	12	46321702	46321702	+	Silent	SNP	T	T	C	rs73292563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCAF11	NM_004719	exon11	c.A1782G	p.E594E	.	.	163	6	88	0	T|0.993;C|0.007	93
SCAF4	57466	bcgsc.ca	37	21	33074666	33074666	+	Silent	SNP	A	A	C	rs77399251	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCAF4	NM_020706	exon5	c.T348G	p.L116L	.	.	294	10	102	0	A|0.958;C|0.042	90
SCAMP5	192683	bcgsc.ca	37	15	75305040	75305040	+	Silent	SNP	A	A	G	rs7174129	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCAMP5	NM_001178111	exon4	c.A30G	p.P10P	.	.	204	17	64	0	A|0.735;G|0.265	23
SCAMP5	192683	bcgsc.ca	37	15	75311138	75311138	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCAMP5	NM_001178111	exon8	c.A522G	p.K174K	.	.	92	7	29	0	.	23
SCAPER	49855	bcgsc.ca	37	15	76797271	76797271	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCAPER	NM_020843	exon23	c.A2883G	p.T961T	.	.	136	5	54	0	.	137
SCARF1	8578	bcgsc.ca	37	17	1538110	1538110	+	Missense_Mutation	SNP	C	C	T	rs61729426	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCARF1	NM_003693	exon11	c.G2435A	p.R812K	.	.	427	21	127	0	C|0.994;T|0.006	91
SCEL	8796	bcgsc.ca	37	13	78178550	78178550	+	Missense_Mutation	SNP	G	G	A	rs2274016	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCEL	NM_144777	exon19	c.G1157A	p.R386K	.	.	292	13	151	0	G|0.860;A|0.140	95
SCEL	8796	bcgsc.ca	37	13	78188078	78188078	+	Missense_Mutation	SNP	A	A	G	rs8002725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCEL	NM_144777	exon24	c.A1439G	p.K480R	.	.	323	27	139	0	A|0.791;G|0.209	95
SCFD1	23256	bcgsc.ca	37	14	31099738	31099738	+	Missense_Mutation	SNP	A	A	G	rs229150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCFD1	NM_016106	exon3	c.A188G	p.K63R	.	.	181	8	54	0	T|0.093;G|0.403	226
SCG3	29106	bcgsc.ca	37	15	51984362	51984362	+	Missense_Mutation	SNP	A	A	G	rs35664837	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCG3	NM_013243	exon7	c.A697G	p.M233V	.	.	98	5	45	0	A|0.935;G|0.065	91
SCGB1D2	10647	bcgsc.ca	37	11	62010939	62010939	+	Silent	SNP	G	G	A	rs2232951	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCGB1D2	NM_006551	exon2	c.G234A	p.A78A	.	.	314	10	136	0	G|0.963;A|0.037	90
SCLT1	132320	bcgsc.ca	37	4	129857935	129857935	+	Silent	SNP	G	G	A	rs116133992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCLT1	NM_144643	exon18	c.C1704T	p.D568D	.	.	364	14	184	0	G|0.990;A|0.010	525
SCLT1	132320	bcgsc.ca	37	4	129867228	129867228	+	Missense_Mutation	SNP	C	C	T	rs112358448	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCLT1	NM_144643	exon16	c.G1373A	p.R458H	.	.	325	8	139	0	C|0.995;T|0.005	525
SCLT1	132320	bcgsc.ca	37	4	129891583	129891583	+	Missense_Mutation	SNP	C	C	T	rs115924008	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCLT1	NM_144643	exon10	c.G727A	p.E243K	.	.	99	7	47	0	C|0.996;T|0.004	525
SCLT1	132320	bcgsc.ca	37	4	129924977	129924977	+	Silent	SNP	C	C	A	rs3113487	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCLT1	NM_144643	exon6	c.G345T	p.L115L	.	.	226	13	102	0	C|0.452;A|0.548	525
SCML2	10389	bcgsc.ca	37	X	18342034	18342034	+	Silent	SNP	G	G	A	rs3213544	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCML2	NM_006089	exon5	c.C342T	p.D114D	.	.	193	9	71	0	0|0.003;T|0.044	226
SCN11A	11280	bcgsc.ca	37	3	38936134	38936134	+	Missense_Mutation	SNP	C	C	T	rs33985936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN11A	NM_014139	exon15	c.G2725A	p.V909I	.	.	260	10	100	0	C|0.801;T|0.199	99
SCN11A	11280	bcgsc.ca	37	3	38941466	38941466	+	Silent	SNP	A	A	T	rs6809179	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN11A	NM_014139	exon13	c.T1941A	p.I647I	.	.	113	5	54	0	A|0.933;T|0.067	99
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166848462	166848462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN1A	NM_001165963	exon26	c.C5323A	p.L1775M	.	.	390	118	140	0	.	147
SCN1B	6324	bcgsc.ca	37	19	35524824	35524824	+	Missense_Mutation	SNP	T	T	C	rs55742440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN1B	NM_199037	exon3	c.T629C	p.L210P	.	.	89	7	40	0	T|0.619;C|0.381	91
SCN3A	6328	bcgsc.ca	37	2	165996107	165996107	+	Silent	SNP	T	T	A	rs1946892	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN3A	NM_006922	exon14	c.A2031T	p.T677T	.	.	194	13	51	0	A|0.545;N|0.000	141
SCN3A	6328	bcgsc.ca	37	2	166003479	166003479	+	Silent	SNP	G	G	A	rs16850131	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN3A	NM_001081676	exon12	c.C1441T	p.L481L	.	.	406	13	235	0	G|0.756;A|0.244	141
SCN8A	6334	bcgsc.ca	37	12	52168096	52168096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN8A	NM_014191	exon20	c.G3769A	p.V1257I	.	.	434	14	123	0	.	29
SCN8A	6334	hgsc.bcm.edu;bcgsc.ca	37	12	52188409	52188409	+	Silent	SNP	C	C	T	rs12301486	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN8A	NM_014191	exon26	c.C4779T	p.V1593V	.	.	372	24	113	0	C|0.992;T|0.008	29
SCN9A	6335	bcgsc.ca	37	2	167142979	167142979	+	Missense_Mutation	SNP	C	C	T	rs58022607	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCN9A	NM_002977	exon11	c.G1469A	p.S490N	.	.	443	15	188	0	C|0.964;T|0.036	181
SCNN1G	6340	bcgsc.ca	37	16	23200848	23200848	+	Silent	SNP	T	T	C	rs5735	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCNN1G	NM_001039	exon3	c.T474C	p.I158I	.	.	113	7	48	0	T|0.746;C|0.254	158
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43614395	43614395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCUBE1	NM_173050	exon15	c.G1757C	p.R586P	.	.	81	22	30	0	.	93
SCUBE2	57758	bcgsc.ca	37	11	9049095	9049095	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCUBE2	NM_020974	exon19	c.A2346G	p.G782G	.	.	149	5	46	0	.	92
SCYL3	57147	bcgsc.ca	37	1	169823521	169823521	+	Missense_Mutation	SNP	C	C	T	rs55788990	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SCYL3	NM_181093	exon13	c.G2059A	p.A687T	.	.	409	9	174	0	C|0.973;T|0.027	361
SDAD1	55153	bcgsc.ca	37	4	76878716	76878716	+	Missense_Mutation	SNP	G	G	C	rs2242471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SDAD1	NM_018115	exon19	c.C1724G	p.S575C	.	.	323	9	143	0	G|0.688;C|0.312	91
SDK2	54549	bcgsc.ca	37	17	71386577	71386577	+	Silent	SNP	G	G	T	rs61752521	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SDK2	NM_001144952	exon29	c.C4041A	p.T1347T	.	.	183	10	123	0	G|0.766;T|0.234	24
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71386481	71386481	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SDK2	NM_001144952	exon29	c.C4137G	p.T1379T	.	.	108	39	54	0	.	24
SDR42E1	93517	bcgsc.ca	37	16	82033612	82033612	+	Missense_Mutation	SNP	T	T	C	rs16956174	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SDR42E1	NM_145168	exon3	c.A286G	p.K96E	.	.	168	7	74	0	T|0.823;C|0.177	90
SDSL	113675	ucsc.edu;bcgsc.ca	37	12	113866981	113866981	+	Silent	SNP	C	C	T	rs61753864	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SDSL	NM_138432	exon5	c.C231T	p.I77I	.	.	160	15	30	0	C|0.977;T|0.023	90
SEC14L2	23541	bcgsc.ca	37	22	30793137	30793137	+	Missense_Mutation	SNP	G	G	A	rs757660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEC14L2	NM_001204204	exon1	c.G32A	p.R11K	.	.	94	6	40	0	G|0.644;A|0.356	90
SEC14L5	9717	bcgsc.ca	37	16	5061250	5061250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014692	exon15	c.A1955G	p.E652G	.	.	122	8	37	0	.	.
SEC16A	9919	bcgsc.ca	37	9	139371562	139371562	+	Missense_Mutation	SNP	G	G	A	rs7852966	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014866	exon3	c.C506T	p.T169M	.	.	142	7	61	0	G|0.971;A|0.029	.
SEC23B	10483	hgsc.bcm.edu;bcgsc.ca	37	20	18506558	18506558	+	Silent	SNP	T	T	C	rs115177758	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEC23B	NM_032985	exon7	c.T816C	p.I272I	.	.	293	19	87	0	T|0.992;C|0.008	91
SEC24D	9871	bcgsc.ca	37	4	119727003	119727003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEC24D	NM_014822	exon7	c.A908G	p.D303G	.	.	159	5	46	0	.	90
SEC24D	9871	bcgsc.ca	37	4	119736796	119736796	+	Silent	SNP	A	A	C	rs2389688	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEC24D	NM_014822	exon5	c.T483G	p.P161P	.	.	174	8	64	0	T|0.219;G|0.154	90
SEL1L3	23231	bcgsc.ca	37	4	25806279	25806279	+	Missense_Mutation	SNP	T	T	C	rs16877591	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015187	exon10	c.A1660G	p.I554V	.	.	328	16	136	0	T|0.933;C|0.067	.
SEL1L3	23231	bcgsc.ca	37	4	25848983	25848983	+	Silent	SNP	A	A	G	rs16877658	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015187	exon2	c.T666C	p.L222L	.	.	241	7	93	0	A|0.980;G|0.020	.
SEL1L	6400	bcgsc.ca	37	14	81952649	81952649	+	Silent	SNP	G	G	A	rs11851475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEL1L	NM_005065	exon17	c.C1782T	p.A594A	.	.	244	9	90	0	G|0.911;A|0.089	227
SELE	6401	bcgsc.ca	37	1	169698760	169698760	+	Missense_Mutation	SNP	T	T	G	rs3917422	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELE	NM_000450	exon6	c.A770C	p.Q257P	.	.	153	6	48	0	T|0.993;G|0.007	95
SELENBP1	8991	bcgsc.ca	37	1	151342263	151342263	+	Missense_Mutation	SNP	C	C	T	rs41285000	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELENBP1	NM_001258289	exon2	c.G113A	p.R38H	.	.	144	10	38	0	C|0.981;T|0.019	90
SELL	6402	bcgsc.ca	37	1	169677679	169677679	+	Silent	SNP	A	A	G	rs4987286	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELL	NM_000655	exon3	c.T390C	p.G130G	.	.	440	12	126	0	A|0.979;G|0.021	90
SELL	6402	bcgsc.ca	37	1	169677709	169677709	+	Silent	SNP	A	A	G	rs1051091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELL	NM_000655	exon3	c.T360C	p.L120L	.	.	393	25	113	1	G|0.290;N|0.000	90
SELP	6403	bcgsc.ca	37	1	169562904	169562904	+	Silent	SNP	C	C	T	rs6128	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELP	NM_003005	exon14	c.G2346A	p.T782T	.	.	143	8	57	0	C|0.687;T|0.313	94
SELP	6403	bcgsc.ca	37	1	169565346	169565346	+	Missense_Mutation	SNP	C	C	A	rs6133	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELP	NM_003005	exon12	c.G1918T	p.V640L	.	.	176	6	68	0	C|0.768;A|0.232	94
SELP	6403	bcgsc.ca	37	1	169566308	169566308	+	Silent	SNP	G	G	A	rs6132	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELP	NM_003005	exon11	c.C1812T	p.N604N	.	.	222	16	100	0	G|0.764;A|0.236	94
SELP	6403	bcgsc.ca	37	1	169566326	169566326	+	Silent	SNP	G	G	A	rs6135	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELP	NM_003005	exon11	c.C1794T	p.C598C	.	.	225	15	89	0	G|0.774;A|0.226	94
SELP	6403	bcgsc.ca	37	1	169586330	169586330	+	Silent	SNP	C	C	T	rs6129	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELP	NM_003005	exon3	c.G417A	p.P139P	.	.	490	22	227	1	C|0.969;T|0.031	94
SELP	6403	ucsc.edu;bcgsc.ca	37	1	169566313	169566313	+	Missense_Mutation	SNP	C	C	T	rs6127	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELP	NM_003005	exon11	c.G1807A	p.D603N	.	.	227	26	95	0	C|0.306;T|0.694	94
SELPLG	6404	bcgsc.ca	37	12	109017898	109017898	+	Missense_Mutation	SNP	C	C	T	rs2228315	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELPLG	NM_001206609	exon2	c.G234A	p.M78I	.	.	238	15	100	0	C|0.835;T|0.165	90
SELRC1	65260	bcgsc.ca;mdanderson.org	37	1	53153432	53153432	+	Missense_Mutation	SNP	T	T	C	rs443751	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SELRC1	NM_023077	exon3	c.A656G	p.K219R	.	.	433	42	161	0	T|0.745;C|0.255	90
SEMA3A	10371	bcgsc.ca	37	7	83634713	83634713	+	Silent	SNP	A	A	G	rs7804122	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMA3A	NM_006080	exon11	c.T1302C	p.I434I	.	.	148	9	73	0	A|0.771;G|0.229	156
SEMA3D	223117	bcgsc.ca	37	7	84651789	84651789	+	Silent	SNP	A	A	G	rs35398608	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMA3D	NM_152754	exon11	c.T1332C	p.N444N	.	.	371	14	119	0	A|0.995;G|0.005	138
SEMA4D	10507	bcgsc.ca	37	9	91993724	91993724	+	Silent	SNP	C	C	T	rs45483393	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMA4D	NM_006378	exon18	c.G2484A	p.T828T	.	.	332	17	113	0	C|0.959;T|0.041	92
SEMA4D	10507	bcgsc.ca	37	9	92006275	92006275	+	Silent	SNP	G	G	A	rs28377168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMA4D	NM_006378	exon11	c.C678T	p.G226G	.	.	138	11	60	0	G|0.935;A|0.065	92
SEMA6C	10500	bcgsc.ca	37	1	151110832	151110832	+	Silent	SNP	G	G	A	rs72708441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMA6C	NM_001178061	exon8	c.C507T	p.C169C	.	.	156	7	35	0	G|0.947;A|0.053	92
SEMA7A	8482	bcgsc.ca	37	15	74706943	74706943	+	Silent	SNP	G	G	A	rs1046146	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMA7A	NM_003612	exon10	c.C1239T	p.V413V	.	.	192	8	91	0	G|0.846;A|0.154	153
SEMG1	6406	bcgsc.ca	37	20	43836173	43836173	+	Missense_Mutation	SNP	T	T	A	rs2301366	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMG1	NM_003007	exon2	c.T235A	p.S79T	.	.	304	11	145	0	T|0.724;A|0.276	92
SEMG1	6406	hgsc.bcm.edu;bcgsc.ca	37	20	43837008	43837008	+	Missense_Mutation	SNP	G	G	A	rs61730001	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMG1	NM_003007	exon2	c.G1070A	p.R357Q	.	.	330	17	180	0	G|0.985;A|0.015	92
SEMG2	6407	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43851922	43851922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEMG2	NM_003008	exon2	c.C1649G	p.S550C	.	.	258	25	140	0	.	91
SENP1	29843	bcgsc.ca	37	12	48468159	48468159	+	Silent	SNP	G	G	A	rs35902603		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SENP1	NM_001267594	exon8	c.C888T	p.H296H	.	.	531	17	173	0	G|0.993;A|0.007	660
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48440205	48440205	+	Silent	SNP	G	G	A	rs34698661		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SENP1	NM_001267594	exon17	c.C1806T	p.D602D	.	.	253	20	114	0	G|0.993;A|0.007	660
SENP5	205564	ucsc.edu;bcgsc.ca	37	3	196613075	196613075	+	Silent	SNP	C	C	T	rs34533379	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SENP5	NM_152699	exon2	c.C1023T	p.D341D	.	.	85	12	39	0	C|0.751;T|0.249	659
SEPSECS	51091	bcgsc.ca	37	4	25125703	25125703	+	Missense_Mutation	SNP	C	C	G	rs2302566	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEPSECS	NM_016955	exon11	c.G1356C	p.K452N	.	.	413	11	248	0	C|0.719;G|0.281	90
SEPT14	346288	bcgsc.ca	37	7	55914241	55914241	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_207366	exon3	c.A144G	p.R48R	.	.	89	5	45	0	.	.
SEPT14	346288	hgsc.bcm.edu;bcgsc.ca	37	7	55910750	55910750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_207366	exon5	c.G443A	p.R148H	.	.	193	9	70	0	.	.
SERGEF	26297	bcgsc.ca	37	11	17809639	17809639	+	Missense_Mutation	SNP	C	C	T	rs10788	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERGEF	NM_012139	exon11	c.G1370A	p.G457E	.	.	668	31	344	1	C|0.875;T|0.125	227
SERGEF	26297	bcgsc.ca	37	11	17809724	17809724	+	Missense_Mutation	SNP	T	T	C	rs1528	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERGEF	NM_012139	exon11	c.A1285G	p.K429E	.	.	817	37	412	0	T|0.878;C|0.122	227
SERHL2	253190	bcgsc.ca	37	22	42970032	42970032	+	Missense_Mutation	SNP	T	T	C	rs52818842	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERHL2	NM_014509	exon12	c.T916C	p.C306R	.	.	631	31	185	2	.	22
SERHL	94009	ucsc.edu	37	22	42907857	42907857	+	RNA	SNP	C	C	T	rs5758775	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERHL	.	.	.	.	.	.	22	5	15	0	C|0.753;T|0.247	90
SERINC1	57515	bcgsc.ca	37	6	122766228	122766228	+	Silent	SNP	G	G	C	rs36042888	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERINC1	NM_020755	exon10	c.C1323G	p.L441L	.	.	192	13	49	0	G|0.662;C|0.338	91
SERINC2	347735	ucsc.edu;bcgsc.ca	37	1	31898639	31898639	+	Silent	SNP	C	C	T	rs35976845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERINC2	NM_001199038	exon6	c.C516T	p.G172G	.	.	173	18	54	0	C|0.935;T|0.065	90
SERINC4	619189	bcgsc.ca	37	15	44088374	44088374	+	Missense_Mutation	SNP	C	C	G	rs144625649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERINC4	NM_001258031	exon9	c.G1119C	p.K373N	.	.	296	9	91	0	C|1.000;G|0.000	90
SERPINA11	256394	bcgsc.ca	37	14	94912799	94912799	+	Silent	SNP	G	G	A	rs12888805	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINA11	NM_001080451	exon3	c.C786T	p.T262T	.	.	292	16	88	0	G|0.707;A|0.293	204
SERPINA11	256394	bcgsc.ca	37	14	94912896	94912896	+	Missense_Mutation	SNP	T	T	G	rs57740714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINA11	NM_001080451	exon3	c.A689C	p.E230A	.	.	276	9	76	0	T|0.689;G|0.311	204
SERPINA1	5265	bcgsc.ca	37	14	94844843	94844843	+	Missense_Mutation	SNP	T	T	G	rs1303	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINA1	NM_001127701	exon7	c.A1200C	p.E400D	.	.	343	14	149	0	T|0.775;G|0.225	226
SERPINA5	5104	ucsc.edu;bcgsc.ca	37	14	95058477	95058477	+	Silent	SNP	G	G	A	rs6117	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINA5	NM_000624	exon6	c.G1122A	p.S374S	.	.	106	14	55	0	G|0.955;A|0.045	652
SERPINB10	5273	bcgsc.ca	37	18	61585260	61585260	+	Missense_Mutation	SNP	T	T	C	rs724558	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINB10	NM_005024	exon3	c.T296C	p.I99T	.	.	189	10	73	1	A|0.020;C|0.224	227
SERPINB10	5273	bcgsc.ca	37	18	61587067	61587067	+	Missense_Mutation	SNP	C	C	T	rs9967382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINB10	NM_005024	exon4	c.C418T	p.P140S	.	.	91	6	57	0	C|0.604;N|0.000	227
SERPINB2	5055	bcgsc.ca	37	18	61565062	61565062	+	Silent	SNP	C	C	G	rs6105	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINB2	NM_002575	exon5	c.C519G	p.V173V	.	.	333	17	114	0	C|0.956;G|0.044	226
SERPINB3	6317	hgsc.bcm.edu;bcgsc.ca	37	18	61324552	61324552	+	Missense_Mutation	SNP	C	C	A	rs150385073	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINB3	NM_006919	exon6	c.G564T	p.K188N	.	.	993	43	319	0	C|0.997;A|0.003	228
SERPINB4	6318	bcgsc.ca	37	18	61305079	61305079	+	Silent	SNP	T	T	G	rs58958857	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINB4	NM_002974	exon8	c.A1047C	p.V349V	.	.	190	12	79	0	T|0.945;G|0.055	228
SERPINB8	5271	ucsc.edu;bcgsc.ca	37	18	61654297	61654297	+	Missense_Mutation	SNP	A	A	G	rs3169983	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINB8	NM_198833	exon7	c.A910G	p.T304A	.	.	157	17	67	0	A|0.851;G|0.149	226
SERPINC1	462	bcgsc.ca	37	1	173878832	173878832	+	Silent	SNP	T	T	C	rs5878	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINC1	NM_000488	exon5	c.A1011G	p.Q337Q	.	.	125	6	37	0	T|0.481;C|0.519	227
SERPINE3	647174	bcgsc.ca	37	13	51935474	51935474	+	Missense_Mutation	SNP	A	A	G	rs75627877		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINE3	NM_001101320	exon6	c.A1061G	p.E354G	.	.	297	11	98	0	A|0.991;G|0.009	24
SERPINI1	5274	bcgsc.ca	37	3	167507031	167507031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINI1	NM_005025	exon2	c.G115A	p.A39T	.	.	92	5	60	0	.	226
SERPINI2	5276	bcgsc.ca	37	3	167184878	167184878	+	Missense_Mutation	SNP	T	T	C	rs9841174	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SERPINI2	NM_001012303	exon4	c.A473G	p.E158G	.	.	177	9	60	0	C|0.395;N|0.001	228
SETBP1	26040	hgsc.bcm.edu;bcgsc.ca	37	18	42530796	42530796	+	Silent	SNP	G	G	A	rs113053616	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SETBP1	NM_015559	exon4	c.G1491A	p.P497P	.	.	140	10	47	0	G|0.996;A|0.004	155
SETD3	84193	bcgsc.ca	37	14	99865109	99865109	+	Missense_Mutation	SNP	C	C	G	rs139698167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SETD3	NM_032233	exon13	c.G1692C	p.R564S	.	.	406	14	190	0	C|0.997;G|0.003	514
SETD3	84193	hgsc.bcm.edu;bcgsc.ca	37	14	99924727	99924727	+	Silent	SNP	G	G	A	rs115281851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SETD3	NM_032233	exon6	c.C564T	p.Y188Y	.	.	162	7	82	0	G|0.991;A|0.009	514
SETD3	84193	hgsc.bcm.edu;bcgsc.ca	37	14	99932071	99932071	+	Silent	SNP	T	T	C	rs34435718	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SETD3	NM_032233	exon2	c.A72G	p.E24E	.	.	313	15	102	0	T|0.991;C|0.009	514
SETX	23064	bcgsc.ca	37	9	135172412	135172412	+	Silent	SNP	A	A	G	rs2296869	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SETX	NM_015046	exon14	c.T5811C	p.D1937D	.	.	167	9	78	0	A|0.628;G|0.372	93
SETX	23064	hgsc.bcm.edu;bcgsc.ca	37	9	135204769	135204769	+	Missense_Mutation	SNP	C	C	T	rs36024203	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SETX	NM_015046	exon10	c.G2216A	p.G739E	.	.	183	8	128	0	C|0.996;T|0.004	93
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29906673	29906673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEZ6L2	NM_001243332	exon5	c.G760A	p.G254R	.	.	151	60	27	0	.	92
SEZ6L	23544	ucsc.edu;bcgsc.ca	37	22	26695077	26695077	+	Missense_Mutation	SNP	G	G	T	rs663048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SEZ6L	NM_021115	exon5	c.G1290T	p.M430I	.	.	84	10	37	1	G|0.765;T|0.235	95
SF3B4	10262	hgsc.bcm.edu	37	1	149895825	149895826	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SF3B4	NM_005850	exon5	c.995_996insC	p.Q332fs	.	.	115	12	25	0	.	91
SFRP4	6424	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37947202	37947202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SFRP4	NM_003014	exon6	c.G920A	p.R307H	.	.	379	115	188	0	.	658
SFXN3	81855	ucsc.edu	37	10	102799264	102799264	+	Missense_Mutation	SNP	C	C	G	rs57571683	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SFXN3	NM_030971	exon12	c.C900G	p.N300K	.	.	89	8	26	0	C|0.986;G|0.014	91
SGCA	6442	bcgsc.ca	37	17	48247689	48247689	+	Silent	SNP	C	C	T	rs1801191	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SGCA	NM_000023	exon7	c.C933T	p.V311V	.	.	284	15	58	0	C|0.911;T|0.089	92
SGCG	6445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23898556	23898556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SGCG	NM_000231	exon8	c.C752A	p.T251K	.	.	111	38	28	0	.	90
SGCG	6445	ucsc.edu;bcgsc.ca	37	13	23824783	23824783	+	Silent	SNP	T	T	G	rs1800351	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SGCG	NM_000231	exon4	c.T312G	p.L104L	.	.	100	14	49	0	T|0.510;G|0.490	90
SGMS1	259230	bcgsc.ca	37	10	52103707	52103707	+	Silent	SNP	A	A	G	rs10763354	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SGMS1	NM_147156	exon7	c.T168C	p.N56N	.	.	153	12	66	0	A|0.473;G|0.527	227
SGSM2	9905	bcgsc.ca	37	17	2275734	2275734	+	Silent	SNP	C	C	G	rs3213712	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SGSM2	NM_014853	exon15	c.C1740G	p.S580S	.	.	124	11	75	0	C|0.810;G|0.190	68
SH2D2A	9047	bcgsc.ca	37	1	156779206	156779206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH2D2A	NM_001161441	exon7	c.T821C	p.V274A	.	.	120	5	41	0	.	90
SH2D4A	63898	bcgsc.ca	37	8	19177103	19177103	+	Silent	SNP	A	A	G	rs2280444	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH2D4A	NM_022071	exon2	c.A45G	p.L15L	.	.	181	11	123	0	A|0.933;G|0.067	90
SH2D4A	63898	bcgsc.ca	37	8	19218766	19218766	+	Missense_Mutation	SNP	A	A	G	rs4921637	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH2D4A	NM_022071	exon6	c.A647G	p.E216G	.	.	169	9	129	0	A|0.756;G|0.244	90
SH3D21	79729	bcgsc.ca	37	1	36772868	36772868	+	Missense_Mutation	SNP	C	C	G	rs1875428	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH3D21	NM_001162530	exon4	c.C327G	p.I109M	.	.	249	13	91	0	C|0.922;G|0.078	91
SH3TC1	54436	bcgsc.ca	37	4	8214553	8214553	+	Missense_Mutation	SNP	G	G	A	rs202092857		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH3TC1	NM_018986	exon4	c.G373A	p.G125R	.	.	190	7	64	0	G|1.000;A|0.000	154
SH3TC2	79628	ucsc.edu;bcgsc.ca	37	5	148407060	148407060	+	Silent	SNP	A	A	C	rs78120278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH3TC2	NM_024577	exon11	c.T2235G	p.A745A	.	.	99	11	47	0	A|0.967;C|0.033	92
SH3YL1	26751	bcgsc.ca	37	2	224919	224919	+	Silent	SNP	A	A	G	rs2290911	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SH3YL1	NM_015677	exon9	c.T783C	p.S261S	.	.	507	16	180	0	A|0.752;G|0.248	91
SHB	6461	bcgsc.ca	37	9	37974743	37974743	+	Silent	SNP	T	T	C	rs1138374	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHB	NM_003028	exon3	c.A930G	p.S310S	.	.	85	8	31	0	T|0.400;C|0.600	92
SHD	56961	ucsc.edu;bcgsc.ca	37	19	4283059	4283059	+	Missense_Mutation	SNP	G	G	A	rs2287714	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHD	NM_020209	exon3	c.G412A	p.G138S	.	.	82	10	26	0	G|0.936;A|0.064	90
SHISA2	387914	bcgsc.ca	37	13	26620978	26620978	+	Silent	SNP	G	G	T	rs74965018	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHISA2	NM_001007538	exon2	c.C561A	p.S187S	.	.	100	6	51	0	G|0.945;T|0.055	69
SHKBP1	92799	bcgsc.ca	37	19	41086309	41086309	+	Silent	SNP	G	G	C	rs11555272	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHKBP1	NM_138392	exon7	c.G480C	p.R160R	.	.	113	10	44	0	G|0.963;C|0.037	92
SHQ1	55164	bcgsc.ca	37	3	72799703	72799703	+	Missense_Mutation	SNP	C	C	T	rs35178407	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHQ1	NM_018130	exon11	c.G1466A	p.S489N	.	.	301	17	111	0	C|0.666;T|0.334	137
SHROOM2	357	bcgsc.ca	37	X	9864443	9864443	+	Missense_Mutation	SNP	C	C	T	rs12006769	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHROOM2	NM_001649	exon4	c.C2495T	p.A832V	.	.	61	5	39	0	C|0.976;T|0.024	198
SHROOM2	357	bcgsc.ca	37	X	9866328	9866328	+	Silent	SNP	G	G	A	rs61750846		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SHROOM2	NM_001649	exon5	c.G2889A	p.P963P	.	.	117	8	33	0	G|0.991;A|0.009	198
SI	6476	bcgsc.ca	37	3	164785196	164785196	+	Silent	SNP	C	C	T	rs76463353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SI	NM_001041	exon6	c.G567A	p.L189L	.	.	175	16	59	0	C|0.956;T|0.044	104
SIGLEC10	89790	bcgsc.ca	37	19	51917735	51917735	+	Silent	SNP	G	G	A	rs1974821	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC10	NM_033130	exon9	c.C1650T	p.N550N	.	.	127	11	54	0	G|0.795;A|0.205	91
SIGLEC12	89858	bcgsc.ca	37	19	51994926	51994926	+	Missense_Mutation	SNP	T	T	C	rs7245807	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC12	NM_053003	exon8	c.A1757G	p.Y586C	.	.	172	9	31	0	T|0.956;C|0.044	96
SIGLEC12	89858	bcgsc.ca	37	19	52000616	52000616	+	Missense_Mutation	SNP	T	T	C	rs28572419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC12	NM_053003	exon6	c.A1489G	p.I497V	.	.	300	21	71	0	T|0.968;C|0.032	96
SIGLEC12	89858	bcgsc.ca	37	19	52000659	52000659	+	Silent	SNP	G	G	A	rs28744388	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC12	NM_053003	exon6	c.C1446T	p.F482F	.	.	431	30	95	0	G|0.936;A|0.064	96
SIGLEC14	100049587	bcgsc.ca	37	19	52149165	52149165	+	Silent	SNP	G	G	A	rs71358847		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC14	NM_001098612	exon3	c.C570T	p.P190P	.	.	393	17	105	0	G|0.500;A|0.500	23
SIGLEC16	400709	bcgsc.ca	37	19	50475114	50475114	+	RNA	SNP	G	G	C	rs8111526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	144	6	62	0	G|0.557;C|0.443	.
SIGLEC1	6614	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	3674170	3674170	+	Silent	SNP	G	G	A	rs61734520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC1	NM_023068	exon13	c.C3432T	p.A1144A	.	.	97	16	17	0	G|0.980;A|0.020	167
SIGLEC9	27180	bcgsc.ca	37	19	51628622	51628622	+	Missense_Mutation	SNP	A	A	C	rs16988910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC9	NM_001198558	exon1	c.A391C	p.K131Q	.	.	84	6	31	0	A|0.895;C|0.105	91
SIGLEC9	27180	bcgsc.ca	37	19	51631236	51631236	+	Missense_Mutation	SNP	T	T	C	rs273690	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIGLEC9	NM_001198558	exon5	c.T1046C	p.V349A	.	.	196	9	56	0	T|0.875;C|0.125	91
SIM2	6493	ucsc.edu	37	21	38092172	38092172	+	Silent	SNP	C	C	T	rs16994404	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIM2	NM_005069	exon4	c.C399T	p.H133H	.	.	38	4	27	0	C|0.943;G|0.001	90
SIN3B	23309	bcgsc.ca	37	19	16977300	16977300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIN3B	NM_015260	exon13	c.A1835G	p.K612R	.	.	67	4	43	0	.	228
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232649855	232649855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIPA1L2	NM_020808	exon1	c.T1231G	p.Y411D	.	.	120	42	40	0	.	95
SIRPB1	10326	bcgsc.ca	37	20	1552457	1552457	+	Silent	SNP	G	G	A	rs16995332	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIRPB1	NM_006065	exon3	c.C660T	p.D220D	.	.	668	25	227	2	G|0.897;A|0.103	91
SIRPB1	10326	bcgsc.ca	37	20	1552601	1552601	+	Silent	SNP	A	A	G	rs111742423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIRPB1	NM_006065	exon3	c.T516C	p.H172H	.	.	544	15	192	0	A|0.988;G|0.012	91
SIRPB1	10326	bcgsc.ca	37	20	1559135	1559135	+	Missense_Mutation	SNP	T	T	G	rs145689140	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIRPB1	NM_001083910	exon2	c.A282C	p.E94D	.	.	942	55	432	1	T|0.987;G|0.013	91
SIRPG	55423	bcgsc.ca	37	20	1616118	1616118	+	Silent	SNP	G	G	A	rs9974013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIRPG	NM_018556	exon4	c.C876T	p.C292C	.	.	411	17	140	0	G|0.976;A|0.024	23
SIRPG	55423	bcgsc.ca	37	20	1616137	1616137	+	Missense_Mutation	SNP	G	G	A	rs6034239	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIRPG	NM_018556	exon4	c.C857T	p.S286L	.	.	399	33	130	0	G|0.459;A|0.541	23
SIRT1	23411	bcgsc.ca	37	10	69666598	69666598	+	Silent	SNP	T	T	C	rs2273773	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIRT1	NM_012238	exon5	c.T994C	p.L332L	.	.	127	6	77	0	T|0.909;C|0.091	226
SIX4	51804	bcgsc.ca	37	14	61186733	61186733	+	Missense_Mutation	SNP	T	T	C	rs61740042	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SIX4	NM_017420	exon2	c.A1294G	p.T432A	.	.	326	19	96	0	T|0.956;C|0.044	154
SKIV2L2	23517	bcgsc.ca	37	5	54645411	54645411	+	Silent	SNP	G	G	A	rs2061242	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SKIV2L2	NM_015360	exon12	c.G1251A	p.K417K	.	.	270	11	117	0	G|0.840;A|0.160	92
SKIV2L2	23517	bcgsc.ca	37	5	54674296	54674296	+	Silent	SNP	A	A	G	rs10471413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SKIV2L2	NM_015360	exon17	c.A1965G	p.Q655Q	.	.	566	28	230	0	A|0.841;G|0.159	92
SLC12A1	6557	bcgsc.ca	37	15	48539587	48539587	+	Silent	SNP	T	T	C	rs6493311	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC12A1	NM_001184832	exon13	c.T1614C	p.Y538Y	.	.	282	12	121	1	T|0.563;C|0.437	24
SLC12A2	6558	bcgsc.ca	37	5	127469859	127469859	+	Silent	SNP	A	A	G	rs2228112	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC12A2	NM_001046	exon6	c.A1191G	p.E397E	.	.	233	6	114	0	A|0.627;C|0.000;G|0.373;T|0.000	94
SLC12A6	9990	bcgsc.ca	37	15	34551082	34551082	+	Silent	SNP	G	G	A	rs7164902	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC12A6	NM_133647	exon4	c.C475T	p.L159L	.	.	916	58	288	0	G|0.751;A|0.249	517
SLC15A1	6564	bcgsc.ca	37	13	99340771	99340771	+	Silent	SNP	G	G	A	rs8187832	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC15A1	NM_005073	exon19	c.C1527T	p.N509N	.	.	217	6	74	0	G|0.925;A|0.075	91
SLC15A1	6564	bcgsc.ca	37	13	99376181	99376181	+	Missense_Mutation	SNP	C	C	T	rs2297322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC15A1	NM_005073	exon5	c.G350A	p.S117N	.	.	186	7	39	0	C|0.768;T|0.232	91
SLC16A11	162515	bcgsc.ca	37	17	6946287	6946287	+	Missense_Mutation	SNP	T	T	C	rs13342692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC16A11	NM_153357	exon2	c.A380G	p.D127G	.	.	119	8	53	0	T|0.856;C|0.144	91
SLC16A6	9120	bcgsc.ca	37	17	66267650	66267650	+	Missense_Mutation	SNP	T	T	G	rs56638304	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC16A6	NM_001174166	exon6	c.A651C	p.E217D	.	.	439	20	166	0	T|1.000;|0.000	90
SLC16A6	9120	bcgsc.ca	37	17	66267691	66267691	+	Missense_Mutation	SNP	A	A	T	rs7222013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC16A6	NM_001174166	exon6	c.T610A	p.F204I	.	.	298	13	114	0	A|0.636;T|0.364	90
SLC16A9	220963	bcgsc.ca	37	10	61413929	61413929	+	Silent	SNP	C	C	T	rs35511253	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC16A9	NM_194298	exon5	c.G855A	p.R285R	.	.	470	13	147	0	C|0.972;T|0.028	93
SLC17A1	6568	ucsc.edu	37	6	25820124	25820124	+	Missense_Mutation	SNP	C	C	T	rs6933573	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC17A1	NM_005074	exon4	c.G227A	p.S76N	.	.	97	10	28	0	C|0.971;T|0.029	94
SLC17A2	10246	bcgsc.ca	37	6	25914853	25914853	+	Missense_Mutation	SNP	G	G	A	rs34525648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC17A2	NM_005835	exon10	c.C1109T	p.S370L	.	.	153	13	79	0	G|0.895;A|0.105	91
SLC17A6	57084	ucsc.edu;bcgsc.ca	37	11	22399187	22399187	+	Silent	SNP	C	C	T	rs1971865	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC17A6	NM_020346	exon12	c.C1650T	p.A550A	.	.	105	11	70	1	C|0.938;T|0.062	580
SLC18A1	6570	bcgsc.ca	37	8	20036713	20036713	+	Missense_Mutation	SNP	A	A	G	rs1390938	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC18A1	NM_001142324	exon4	c.T407C	p.I136T	.	.	127	13	58	0	A|0.213;G|0.787	92
SLC18A1	6570	bcgsc.ca	37	8	20036827	20036827	+	Missense_Mutation	SNP	C	C	G	rs2270637	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC18A1	NM_001142324	exon4	c.G293C	p.S98T	.	.	166	12	102	0	C|0.796;G|0.204	92
SLC18A1	6570	bcgsc.ca	37	8	20036869	20036869	+	Missense_Mutation	SNP	A	A	G	rs17215801	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC18A1	NM_001142324	exon4	c.T251C	p.F84S	.	.	164	7	113	0	A|0.979;G|0.021	92
SLC18B1	116843	bcgsc.ca	37	6	133105120	133105120	+	Missense_Mutation	SNP	C	C	T	rs6926101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_052831	exon6	c.G610A	p.V204I	.	.	230	8	138	0	C|0.812;T|0.188	.
SLC1A1	6505	bcgsc.ca	37	9	4585406	4585406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC1A1	NM_004170	exon12	c.G1423A	p.V475I	.	.	116	7	57	0	.	514
SLC1A1	6505	hgsc.bcm.edu;bcgsc.ca	37	9	4561477	4561477	+	Silent	SNP	C	C	T	rs79429045	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC1A1	NM_004170	exon3	c.C261T	p.S87S	.	.	272	11	112	0	C|0.993;T|0.007	514
SLC1A7	6512	bcgsc.ca	37	1	53600078	53600078	+	Silent	SNP	A	A	G	rs3737989	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC1A7	NM_006671	exon2	c.T159C	p.P53P	.	.	72	5	35	0	A|0.820;G|0.180	155
SLC20A2	6575	hgsc.bcm.edu;bcgsc.ca	37	8	42295019	42295019	+	Silent	SNP	G	G	T	rs116359869	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC20A2	NM_001257181	exon8	c.C1011A	p.T337T	.	.	197	11	83	0	G|0.980;T|0.020	92
SLC22A15	55356	bcgsc.ca	37	1	116605423	116605423	+	Silent	SNP	C	C	T	rs3748743	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC22A15	NM_018420	exon9	c.C1212T	p.S404S	.	.	185	12	67	0	C|0.886;T|0.114	67
SLC22A1	6580	bcgsc.ca	37	6	160551204	160551204	+	Missense_Mutation	SNP	G	G	C	rs683369	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC22A1	NM_153187	exon2	c.G480C	p.L160F	.	.	745	36	154	0	G|0.143;C|0.857	90
SLC22A18	5002	bcgsc.ca	37	11	2946406	2946406	+	Silent	SNP	G	G	A	rs61743248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC22A18	NM_002555	exon11	c.G1254A	p.Q418Q	.	.	121	8	57	0	G|0.987;A|0.013	92
SLC22A24	283238	bcgsc.ca	37	11	62871674	62871674	+	Silent	SNP	C	C	T	rs11824521	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136506	exon5	c.G927A	p.K309K	.	.	150	10	89	0	C|0.966;T|0.034	.
SLC22A25	387601	bcgsc.ca	37	11	62996022	62996022	+	Silent	SNP	G	G	A	rs79237594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC22A25	NM_199352	exon2	c.C417T	p.C139C	.	.	160	9	57	0	G|0.951;A|0.049	72
SLC23A2	9962	bcgsc.ca	37	20	4880308	4880308	+	Silent	SNP	G	G	A	rs1776964	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC23A2	NM_203327	exon6	c.C375T	p.A125A	.	.	108	5	33	0	G|0.545;A|0.455	92
SLC24A3	57419	bcgsc.ca	37	20	19634732	19634732	+	Silent	SNP	G	G	A	rs3790278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC24A3	NM_020689	exon7	c.G639A	p.L213L	.	.	518	35	161	0	G|0.379;A|0.621	91
SLC24A3	57419	bcgsc.ca	37	20	19634747	19634747	+	Silent	SNP	T	T	C	rs3790279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC24A3	NM_020689	exon7	c.T654C	p.I218I	.	.	465	32	145	0	T|0.391;C|0.609	91
SLC24A4	123041	bcgsc.ca	37	14	92920371	92920371	+	Silent	SNP	C	C	T	rs7144273	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC24A4	NM_153646	exon11	c.C1008T	p.P336P	.	.	161	7	47	0	C|0.435;N|0.000	93
SLC24A5	283652	bcgsc.ca	37	15	48426484	48426484	+	Missense_Mutation	SNP	A	A	G	rs1426654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC24A5	NM_205850	exon3	c.A331G	p.T111A	.	.	301	20	99	0	A|0.618;G|0.382	90
SLC25A13	10165	bcgsc.ca	37	7	95750647	95750647	+	Silent	SNP	G	G	A	rs35539807	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC25A13	NM_001160210	exon18	c.C1887T	p.N629N	.	.	246	8	87	0	G|0.966;A|0.034	515
SLC25A13	10165	bcgsc.ca	37	7	95751230	95751230	+	Silent	SNP	G	G	A	rs79886797	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC25A13	NM_001160210	exon16	c.C1674T	p.T558T	.	.	196	10	70	0	G|0.982;A|0.018	515
SLC25A23	79085	bcgsc.ca	37	19	6454651	6454651	+	Silent	SNP	T	T	C	rs8103745	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC25A23	NM_024103	exon5	c.A561G	p.K187K	.	.	91	6	38	1	T|0.820;C|0.180	92
SLC25A46	91137	bcgsc.ca	37	5	110082014	110082014	+	Silent	SNP	C	C	T	rs35220834	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC25A46	NM_138773	exon4	c.C429T	p.V143V	.	.	386	8	197	0	C|0.967;T|0.033	68
SLC25A46	91137	bcgsc.ca	37	5	110096939	110096939	+	Silent	SNP	G	G	A	rs7724788	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC25A46	NM_138773	exon8	c.G714A	p.E238E	.	.	231	10	89	0	G|0.815;A|0.185	68
SLC25A46	91137	bcgsc.ca	37	5	110097362	110097362	+	Missense_Mutation	SNP	G	G	T	rs79149180	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC25A46	NM_138773	exon8	c.G1137T	p.E379D	.	.	253	8	164	0	G|0.969;T|0.031	68
SLC26A11	284129	bcgsc.ca	37	17	78225175	78225175	+	Missense_Mutation	SNP	G	G	C	rs76203432	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A11	NM_173626	exon17	c.G1704C	p.Q568H	.	.	344	14	93	0	G|0.990;C|0.010	90
SLC26A4	5172	bcgsc.ca	37	7	107342294	107342294	+	Missense_Mutation	SNP	T	T	G	rs17154335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A4	NM_000441	exon17	c.T1826G	p.V609G	.	.	132	6	64	0	T|0.952;G|0.048	96
SLC26A4	5172	bcgsc.ca	37	7	107350539	107350539	+	Silent	SNP	C	C	T	rs17154347	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A4	NM_000441	exon19	c.C2130T	p.D710D	.	.	256	8	113	1	C|0.981;T|0.019	96
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35919084	35919084	+	Silent	SNP	G	G	A	rs116555814		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A8	NM_052961	exon19	c.C2328T	p.D776D	.	.	101	36	36	0	G|0.999;A|0.001	92
SLC26A9	115019	bcgsc.ca	37	1	205884188	205884188	+	Silent	SNP	G	G	T	rs9438399	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A9	NM_134325	exon22	c.C2496A	p.T832T	.	.	203	11	44	0	G|0.937;T|0.063	92
SLC26A9	115019	hgsc.bcm.edu;bcgsc.ca	37	1	205892228	205892228	+	Silent	SNP	A	A	G	rs140575203	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A9	NM_134325	exon16	c.T1755C	p.S585S	.	.	581	26	140	0	A|0.993;G|0.007	92
SLC26A9	115019	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	205898421	205898421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC26A9	NM_134325	exon7	c.A781C	p.I261L	.	.	156	12	47	0	.	92
SLC28A2	9153	bcgsc.ca	37	15	45556163	45556163	+	Silent	SNP	T	T	C	rs8023604	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC28A2	NM_004212	exon6	c.T531C	p.F177F	.	.	311	15	75	0	T|0.841;C|0.159	94
SLC28A2	9153	bcgsc.ca	37	15	45559774	45559774	+	Missense_Mutation	SNP	T	T	C	rs17215633	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC28A2	NM_004212	exon11	c.T1064C	p.F355S	.	.	377	13	160	2	T|0.988;C|0.012	94
SLC28A3	64078	bcgsc.ca	37	9	86900369	86900369	+	Missense_Mutation	SNP	T	T	A	rs56350726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC28A3	NM_001199633	exon14	c.A1538T	p.Y513F	.	.	130	6	47	0	T|0.910;A|0.090	94
SLC2A11	66035	bcgsc.ca	37	22	24226890	24226890	+	Missense_Mutation	SNP	G	G	A	rs60699980	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC2A11	NM_030807	exon13	c.G1366A	p.A456T	.	.	654	23	190	0	G|0.966;A|0.034	91
SLC2A2	6514	bcgsc.ca	37	3	170732300	170732300	+	Missense_Mutation	SNP	G	G	A	rs5400	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC2A2	NM_000340	exon3	c.C329T	p.T110I	.	.	268	12	116	0	G|0.776;A|0.224	515
SLC2A3	6515	bcgsc.ca	37	12	8082373	8082373	+	Silent	SNP	G	G	A	rs147684244	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC2A3	NM_006931	exon6	c.C768T	p.T256T	.	.	549	16	203	0	G|0.994;A|0.006	94
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9098497	9098497	+	Silent	SNP	G	G	T	rs12564676	byfrequency;alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC2A5	NM_003039	exon10	c.C1167A	p.L389L	.	.	77	14	30	0	G|0.999;A|0.001	517
SLC2A7	155184	bcgsc.ca	37	1	9079301	9079301	+	Missense_Mutation	SNP	C	C	T	rs34545462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC2A7	NM_207420	exon4	c.G403A	p.V135I	.	.	130	6	39	0	C|0.975;T|0.025	514
SLC2A8	29988	bcgsc.ca	37	9	130162230	130162230	+	Silent	SNP	C	C	G	rs36057295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC2A8	NM_014580	exon4	c.C471G	p.L157L	.	.	222	8	71	0	C|0.976;G|0.024	92
SLC30A3	7781	bcgsc.ca	37	2	27478231	27478231	+	Silent	SNP	A	A	G	rs13390228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC30A3	NM_003459	exon8	c.T1116C	p.Y372Y	.	.	126	10	58	2	A|0.845;G|0.155	90
SLC30A4	7782	bcgsc.ca	37	15	45814306	45814306	+	Silent	SNP	A	A	G	rs61756712	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC30A4	NM_013309	exon2	c.T247C	p.L83L	.	.	160	8	59	0	A|0.912;G|0.088	90
SLC30A8	169026	bcgsc.ca	37	8	118170004	118170004	+	Missense_Mutation	SNP	C	C	T	rs73317647	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC30A8	NM_173851	exon4	c.C493T	p.R165C	.	.	1190	33	181	0	C|0.997;T|0.003	229
SLC35A3	23443	bcgsc.ca	37	1	100459132	100459132	+	Missense_Mutation	SNP	G	G	A	rs74102304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC35A3	NM_001271685	exon2	c.G148A	p.V50I	.	.	184	10	111	0	G|0.962;A|0.038	90
SLC35A3	23443	bcgsc.ca	37	1	100472604	100472604	+	Silent	SNP	A	A	G	rs534252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC35A3	NM_001271685	exon4	c.A483G	p.L161L	.	.	77	6	47	0	A|0.755;G|0.245	90
SLC35A5	55032	bcgsc.ca	37	3	112289505	112289505	+	Silent	SNP	C	C	T	rs35692417	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC35A5	NM_017945	exon4	c.C348T	p.S116S	.	.	447	14	215	0	C|0.934;T|0.066	91
SLC35A5	55032	bcgsc.ca	37	3	112299732	112299732	+	Silent	SNP	A	A	G	rs2292442	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC35A5	NM_017945	exon6	c.A768G	p.E256E	.	.	198	6	61	0	A|0.838;G|0.162	91
SLC35D2	11046	hgsc.bcm.edu;bcgsc.ca	37	9	99099049	99099049	+	Silent	SNP	T	T	C	rs35044811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC35D2	NM_007001	exon9	c.A702G	p.Q234Q	.	.	181	12	97	0	T|0.997;C|0.003	90
SLC35E2	9906	bcgsc.ca	37	1	1670388	1670388	+	Missense_Mutation	SNP	A	A	G	rs140909700	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC35E2	NM_001199787	exon4	c.T431C	p.M144T	.	.	1123	35	657	0	A|0.999;G|0.001	91
SLC35G5	83650	bcgsc.ca	37	8	11189379	11189379	+	Missense_Mutation	SNP	G	G	T	rs58797482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_054028	exon1	c.G764T	p.C255F	.	.	144	11	61	0	G|0.968;T|0.032	.
SLC35G5	83650	bcgsc.ca	37	8	11189464	11189464	+	Silent	SNP	C	C	T	rs58771247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_054028	exon1	c.C849T	p.C283C	.	.	207	15	90	0	C|0.954;T|0.046	.
SLC35G5	83650	ucsc.edu	37	8	11188922	11188922	+	Missense_Mutation	SNP	T	T	C	rs76944947	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_054028	exon1	c.T307C	p.W103R	.	.	133	20	60	2	T|0.975;C|0.025	.
SLC36A2	153201	bcgsc.ca	37	5	150696496	150696496	+	Missense_Mutation	SNP	G	G	A	rs10042608	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC36A2	NM_181776	exon10	c.C1334T	p.A445V	.	.	133	5	46	0	G|0.928;A|0.072	91
SLC36A2	153201	bcgsc.ca	37	5	150715103	150715103	+	Silent	SNP	C	C	T	rs36053782	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC36A2	NM_181776	exon6	c.G531A	p.V177V	.	.	208	12	62	0	C|0.961;T|0.039	91
SLC36A3	285641	bcgsc.ca	37	5	150666907	150666907	+	Missense_Mutation	SNP	A	A	G	rs114608995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC36A3	NM_001145017	exon7	c.T731C	p.L244S	.	.	229	9	81	0	A|0.984;G|0.016	93
SLC36A3	285641	bcgsc.ca	37	5	150675827	150675827	+	Silent	SNP	G	G	A	rs61729743	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC36A3	NM_181774	exon3	c.C222T	p.V74V	.	.	185	8	59	0	G|0.973;A|0.027	93
SLC36A4	120103	bcgsc.ca	37	11	92895920	92895920	+	Missense_Mutation	SNP	T	T	C	rs78676517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC36A4	NM_152313	exon9	c.A989G	p.H330R	.	.	186	6	124	0	T|0.949;C|0.051	93
SLC36A4	120103	bcgsc.ca	37	11	92901164	92901164	+	Silent	SNP	A	A	G	rs116186359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC36A4	NM_152313	exon7	c.T714C	p.L238L	.	.	259	9	119	0	A|0.992;G|0.008	93
SLC37A2	219855	bcgsc.ca	37	11	124949044	124949044	+	Silent	SNP	C	C	T	rs59570189	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC37A2	NM_001145290	exon5	c.C351T	p.Y117Y	.	.	225	11	56	0	C|0.815;T|0.185	92
SLC37A3	84255	bcgsc.ca	37	7	140051116	140051116	+	Missense_Mutation	SNP	G	G	A	rs76089276	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC37A3	NM_207113	exon9	c.C839T	p.A280V	.	.	205	7	98	0	G|0.969;A|0.031	93
SLC37A4	2542	bcgsc.ca	37	11	118895632	118895632	+	Silent	SNP	C	C	T	rs34871377	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC37A4	NM_001164278	exon12	c.G1344A	p.K448K	.	.	78	4	45	0	C|0.979;T|0.021	67
SLC38A6	145389	bcgsc.ca	37	14	61510176	61510176	+	Silent	SNP	T	T	C	rs113118527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC38A6	NM_153811	exon10	c.T699C	p.N233N	.	.	390	14	169	0	T|0.986;C|0.014	92
SLC38A8	146167	bcgsc.ca	37	16	84067023	84067023	+	Missense_Mutation	SNP	G	G	C	rs56802364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC38A8	NM_001080442	exon3	c.C440G	p.A147G	.	.	203	6	82	0	G|0.965;C|0.035	68
SLC38A8	146167	ucsc.edu;bcgsc.ca	37	16	84063130	84063130	+	Missense_Mutation	SNP	C	C	G	rs11862366	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC38A8	NM_001080442	exon5	c.G659C	p.S220T	.	.	96	9	62	0	C|0.938;G|0.062	68
SLC38A9	153129	bcgsc.ca	37	5	54941617	54941617	+	Silent	SNP	A	A	G	rs35361432	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC38A9	NM_173514	exon12	c.T1167C	p.N389N	.	.	304	10	85	0	A|0.954;G|0.046	68
SLC39A10	57181	bcgsc.ca	37	2	196545348	196545348	+	Missense_Mutation	SNP	C	C	A	rs114992984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A10	NM_020342	exon2	c.C582A	p.H194Q	.	.	444	15	173	0	C|0.995;A|0.005	92
SLC39A11	201266	bcgsc.ca	37	17	71027797	71027797	+	Silent	SNP	C	C	A	rs34317750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A11	NM_001159770	exon4	c.G204T	p.T68T	.	.	116	5	60	0	C|0.949;A|0.051	91
SLC39A11	201266	bcgsc.ca	37	17	71027833	71027833	+	Silent	SNP	A	A	G	rs8079757	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A11	NM_001159770	exon4	c.T168C	p.Y56Y	.	.	102	6	51	0	A|0.852;G|0.148	91
SLC39A12	221074	bcgsc.ca	37	10	18280214	18280214	+	Silent	SNP	T	T	A	rs59434947	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A12	NM_152725	exon8	c.T1404A	p.L468L	.	.	162	5	64	0	T|0.888;A|0.112	154
SLC39A14	23516	bcgsc.ca	37	8	22262321	22262321	+	Missense_Mutation	SNP	T	T	C	rs896378	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A14	NM_001135153	exon2	c.T98C	p.L33P	.	.	103	7	38	0	C|0.583;N|0.000	90
SLC39A14	23516	bcgsc.ca	37	8	22273687	22273687	+	Silent	SNP	T	T	C	rs6558052	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A14	NM_001135153	exon7	c.T1041C	p.H347H	.	.	105	8	67	0	T|0.748;C|0.252	90
SLC39A2	29986	bcgsc.ca	37	14	21469151	21469151	+	Missense_Mutation	SNP	T	T	C	rs2234636	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A2	NM_014579	exon4	c.T343C	p.F115L	.	.	433	19	126	0	T|0.702;C|0.298	92
SLC39A4	55630	bcgsc.ca	37	8	145639681	145639681	+	Missense_Mutation	SNP	G	G	C	rs1871534	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A4	NM_130849	exon6	c.C1114G	p.L372V	.	.	491	16	87	0	G|0.578;C|0.422	90
SLC39A8	64116	bcgsc.ca	37	4	103188709	103188709	+	Missense_Mutation	SNP	C	C	T	rs13107325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC39A8	NM_022154	exon7	c.G1171A	p.A391T	.	.	355	10	177	0	C|0.945;T|0.055	90
SLC40A1	30061	bcgsc.ca	37	2	190437632	190437632	+	Silent	SNP	G	G	A	rs11568345	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC40A1	NM_014585	exon4	c.C327T	p.I109I	.	.	223	8	98	0	G|0.969;A|0.031	91
SLC44A4	80736	bcgsc.ca	37	6	31833660	31833660	+	Missense_Mutation	SNP	G	G	A	rs6915800	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC44A4	NM_025257	exon14	c.C1477T	p.R493C	.	.	54	5	27	0	G|0.992;A|0.008	156
SLC44A4	80736	bcgsc.ca	37	6	31838441	31838441	+	Missense_Mutation	SNP	T	T	C	rs644827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC44A4	NM_025257	exon11	c.A976G	p.M326V	.	.	195	9	65	0	T|0.389;C|0.611	156
SLC44A4	80736	bcgsc.ca	37	6	31839309	31839309	+	Missense_Mutation	SNP	C	C	T	rs2242665	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC44A4	NM_025257	exon8	c.G559A	p.V187I	.	.	211	12	80	0	C|0.392;T|0.608	156
SLC44A4	80736	bcgsc.ca	37	6	31839331	31839331	+	Silent	SNP	C	C	T	rs2242664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC44A4	NM_025257	exon8	c.G537A	p.G179G	.	.	147	10	57	1	C|0.391;T|0.609	156
SLC44A5	204962	bcgsc.ca	37	1	75699771	75699771	+	Silent	SNP	A	A	G	rs10493565	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC44A5	NM_152697	exon12	c.T753C	p.I251I	.	.	206	8	132	0	A|0.766;G|0.234	95
SLC44A5	204962	bcgsc.ca	37	1	75716928	75716928	+	Silent	SNP	G	G	A	rs114123196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC44A5	NM_152697	exon7	c.C312T	p.S104S	.	.	115	8	61	0	G|0.993;A|0.007	95
SLC45A1	50651	bcgsc.ca	37	1	8399674	8399674	+	Silent	SNP	G	G	A	rs61740586	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC45A1	NM_001080397	exon7	c.G1896A	p.S632S	.	.	238	8	134	0	G|0.978;A|0.022	494
SLC45A3	85414	bcgsc.ca	37	1	205628428	205628428	+	Silent	SNP	C	C	G	rs7540439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC45A3	NM_033102	exon5	c.G1596C	p.L532L	.	.	180	12	47	0	C|0.960;G|0.040	98
SLC4A2	6522	bcgsc.ca	37	7	150761680	150761680	+	Silent	SNP	C	C	A	rs1050702	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC4A2	NM_003040	exon4	c.C285A	p.R95R	.	.	197	7	109	0	C|0.839;A|0.161	90
SLC4A5	57835	bcgsc.ca	37	2	74531640	74531640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC4A5	NM_021196	exon2	c.A247G	p.S83G	.	.	155	5	69	0	.	98
SLC5A12	159963	bcgsc.ca	37	11	26732884	26732884	+	Missense_Mutation	SNP	C	C	A	rs115137776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC5A12	NM_178498	exon3	c.G427T	p.V143L	.	.	214	9	87	0	C|0.984;A|0.016	92
SLC6A11	6538	bcgsc.ca	37	3	10885920	10885920	+	Silent	SNP	T	T	C	rs2304725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC6A11	NM_014229	exon5	c.T645C	p.S215S	.	.	247	12	73	0	T|0.655;C|0.345	132
SLC6A17	388662	bcgsc.ca	37	1	110714694	110714694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC6A17	NM_001010898	exon3	c.T299C	p.V100A	.	.	134	6	36	0	.	92
SLC6A17	388662	bcgsc.ca	37	1	110740931	110740931	+	Silent	SNP	G	G	A	rs6685009	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC6A17	NM_001010898	exon12	c.G2049A	p.E683E	.	.	86	7	44	0	G|0.845;A|0.155	92
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244871	1244871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC6A18	NM_182632	exon11	c.A1645G	p.N549D	.	.	113	25	31	0	.	91
SLC6A20	54716	bcgsc.ca	37	3	45812786	45812786	+	Silent	SNP	G	G	A	rs34458611	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC6A20	NM_020208	exon6	c.C858T	p.T286T	.	.	206	14	69	0	G|0.970;A|0.030	92
SLC7A11	23657	bcgsc.ca	37	4	139140494	139140494	+	Silent	SNP	G	G	C	rs6838248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A11	NM_014331	exon5	c.C672G	p.A224A	.	.	237	16	150	0	G|0.601;C|0.399	91
SLC7A13	157724	bcgsc.ca	37	8	87229948	87229948	+	Silent	SNP	T	T	G	rs4621787	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A13	NM_138817	exon3	c.A930C	p.S310S	.	.	279	10	82	0	A|0.126;G|0.000;T|0.873	90
SLC7A13	157724	bcgsc.ca	37	8	87241847	87241847	+	Silent	SNP	G	G	A	rs7814198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A13	NM_138817	exon1	c.C660T	p.G220G	.	.	215	8	48	0	G|0.644;A|0.356	90
SLC7A14	57709	bcgsc.ca	37	3	170184949	170184949	+	Missense_Mutation	SNP	G	G	A	rs73040363	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A14	NM_020949	exon8	c.C2210T	p.A737V	.	.	377	13	142	0	G|0.942;A|0.058	94
SLC7A14	57709	bcgsc.ca	37	3	170219027	170219027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A14	NM_020949	exon3	c.A412G	p.N138D	.	.	118	13	45	0	.	94
SLC7A2	6542	bcgsc.ca	37	8	17415898	17415898	+	Silent	SNP	C	C	T	rs77588963	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A2	NM_001164771	exon8	c.C1410T	p.L470L	.	.	211	13	105	0	C|0.966;T|0.034	93
SLC7A4	6545	bcgsc.ca	37	22	21384578	21384578	+	Missense_Mutation	SNP	C	C	T	rs2270384	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A4	NM_004173	exon3	c.G1045A	p.A349T	.	.	157	7	87	0	C|0.774;T|0.226	279
SLC7A6OS	84138	bcgsc.ca	37	16	68344696	68344696	+	Missense_Mutation	SNP	C	C	T	rs3803650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC7A6OS	NM_032178	exon1	c.G134A	p.G45D	.	.	195	13	95	0	C|0.334;T|0.666	91
SLC9A2	6549	bcgsc.ca	37	2	103299732	103299732	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC9A2	NM_003048	exon4	c.T1017C	p.C339C	.	.	121	6	50	0	.	157
SLC9A3R2	9351	bcgsc.ca	37	16	2087562	2087562	+	Silent	SNP	G	G	A	rs1132368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC9A3R2	NM_004785	exon6	c.G816A	p.S272S	.	.	432	26	104	0	G|0.937;A|0.063	23
SLC9A5	6553	bcgsc.ca	37	16	67304915	67304915	+	Silent	SNP	A	A	G	rs1061356	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLC9A5	NM_004594	exon16	c.A2493G	p.L831L	.	.	75	4	51	0	A|0.881;G|0.119	92
SLC9C1	285335	bcgsc.ca	37	3	111887788	111887788	+	Missense_Mutation	SNP	A	A	G	rs73853324	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_183061	exon25	c.T3173C	p.V1058A	.	.	179	7	79	0	A|0.946;G|0.054	.
SLC9C1	285335	bcgsc.ca	37	3	111898387	111898387	+	Silent	SNP	A	A	G	rs74367861	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_183061	exon23	c.T2910C	p.T970T	.	.	303	9	75	0	A|0.902;G|0.098	.
SLC9C2	284525	bcgsc.ca	37	1	173516915	173516915	+	Silent	SNP	G	G	A	rs114115413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_178527	exon13	c.C1470T	p.H490H	.	.	214	8	82	0	G|0.989;A|0.011	.
SLC9C2	284525	bcgsc.ca	37	1	173517540	173517540	+	Silent	SNP	G	G	A	rs6425247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_178527	exon12	c.C1449T	p.I483I	.	.	366	14	166	0	G|0.877;A|0.123	.
SLC9C2	284525	bcgsc.ca	37	1	173517547	173517547	+	Missense_Mutation	SNP	G	G	A	rs7551131	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_178527	exon12	c.C1442T	p.T481M	.	.	390	14	182	0	G|0.934;A|0.066	.
SLC9C2	284525	bcgsc.ca	37	1	173526520	173526520	+	Missense_Mutation	SNP	C	C	T	rs116588526	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_178527	exon10	c.G1174A	p.V392I	.	.	341	13	151	0	C|0.989;T|0.011	.
SLCO1B7	338821	hgsc.bcm.edu;bcgsc.ca	37	12	21243035	21243035	+	Missense_Mutation	SNP	C	C	A	rs73241802		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001009562	exon13	c.C1918A	p.Q640K	.	.	187	12	96	0	C|0.980;A|0.020	.
SLCO1C1	53919	bcgsc.ca	37	12	20864356	20864356	+	Silent	SNP	C	C	T	rs7963279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLCO1C1	NM_017435	exon5	c.C441T	p.S147S	.	.	207	13	91	1	C|0.727;T|0.273	97
SLFN11	91607	bcgsc.ca	37	17	33679943	33679943	+	Missense_Mutation	SNP	C	C	T	rs79638520	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFN11	NM_152270	exon5	c.G2138A	p.S713N	.	.	279	18	107	0	C|0.980;T|0.020	159
SLFN12	55106	hgsc.bcm.edu;bcgsc.ca	37	17	33749215	33749215	+	Missense_Mutation	SNP	A	A	G	rs140269563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFN12	NM_018042	exon2	c.T833C	p.M278T	.	.	203	10	101	0	A|0.998;G|0.002	91
SLFN12L	100506736	bcgsc.ca	37	17	33805180	33805180	+	Missense_Mutation	SNP	G	G	C	rs2304967	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFN12L	NM_001195790	exon3	c.C1118G	p.A373G	.	.	124	9	45	0	G|0.458;C|0.542	23
SLFN12L	100506736	bcgsc.ca	37	17	33806842	33806842	+	Frame_Shift_Del	DEL	G	G	-	rs143471015		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFN12L	NM_001195790	exon2	c.387delC	p.S129fs	.	.	236	29	87	0	G|0.931;-|0.069	23
SLFN12L	100506736	bcgsc.ca;mdanderson.org	37	17	33802156	33802156	+	Missense_Mutation	SNP	T	T	G	rs56070076		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFN12L	NM_001195790	exon4	c.A1553C	p.Y518S	.	.	563	50	217	0	.	23
SLFN13	146857	bcgsc.ca	37	17	33769038	33769038	+	Missense_Mutation	SNP	C	C	A	rs62078111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFN13	NM_144682	exon5	c.G1466T	p.R489L	.	.	914	23	266	1	A|0.106;C|0.893;T|0.001	91
SLFNL1	200172	ucsc.edu;bcgsc.ca	37	1	41482976	41482976	+	Missense_Mutation	SNP	A	A	G	rs79974017	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLFNL1	NM_144990	exon4	c.T1031C	p.V344A	.	.	107	9	36	0	A|0.976;G|0.024	91
SLIT1	6585	bcgsc.ca	37	10	98790567	98790567	+	Silent	SNP	G	G	A	rs61731899	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLIT1	NM_003061	exon25	c.C2529T	p.D843D	.	.	128	5	35	0	G|0.965;A|0.035	94
SLITRK4	139065	bcgsc.ca	37	X	142717383	142717383	+	Silent	SNP	A	A	G	rs73577386	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SLITRK4	NM_001184750	exon2	c.T1542C	p.S514S	.	.	121	8	59	1	A|0.836;G|0.164	193
SMC3	9126	hgsc.bcm.edu;bcgsc.ca	37	10	112350758	112350758	+	Silent	SNP	T	T	C	rs75817442	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMC3	NM_005445	exon17	c.T1680C	p.Y560Y	.	.	261	16	147	0	T|0.995;C|0.005	92
SMC5	23137	bcgsc.ca	37	9	72897440	72897440	+	Missense_Mutation	SNP	T	T	C	rs1180117	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMC5	NM_015110	exon7	c.T922C	p.C308R	.	.	342	13	236	0	T|0.778;C|0.222	229
SMC5	23137	bcgsc.ca	37	9	72933774	72933774	+	Missense_Mutation	SNP	A	A	G	rs11142365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMC5	NM_015110	exon15	c.A2045G	p.H682R	.	.	282	9	162	0	A|0.888;G|0.112	229
SMCO3	0	bcgsc.ca	37	12	14959391	14959391	+	Missense_Mutation	SNP	T	T	C	rs2241221	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001013698	exon2	c.A224G	p.K75R	.	.	293	22	157	0	T|0.831;C|0.169	.
SMG6	23293	bcgsc.ca	37	17	2186100	2186100	+	Silent	SNP	C	C	T	rs749240	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMG6	NM_017575	exon8	c.G2502A	p.Q834Q	.	.	301	19	93	0	C|0.574;N|0.001	228
SMG7	9887	bcgsc.ca	37	1	183511456	183511456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMG7	NM_201569	exon14	c.G1661A	p.R554Q	.	.	309	11	191	0	.	92
SMG7	9887	bcgsc.ca	37	1	183515428	183515428	+	Missense_Mutation	SNP	G	G	A	rs2298083	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMG7	NM_173156	exon17	c.G2698A	p.V900I	.	.	235	21	89	0	G|0.837;A|0.163	92
SMG8	55181	bcgsc.ca	37	17	57292240	57292240	+	Silent	SNP	T	T	C	rs74665766	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMG8	NM_018149	exon4	c.T2853C	p.L951L	.	.	216	9	96	1	T|0.962;C|0.038	93
SMOC1	64093	bcgsc.ca	37	14	70477508	70477508	+	Silent	SNP	C	C	T	rs3825739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMOC1	NM_001034852	exon8	c.C702T	p.A234A	.	.	100	7	36	0	C|0.825;T|0.175	92
SMOC1	64093	ucsc.edu;bcgsc.ca	37	14	70418881	70418881	+	Silent	SNP	G	G	A	rs3742909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMOC1	NM_001034852	exon2	c.G126A	p.Q42Q	.	.	131	12	47	0	G|0.784;A|0.216	92
SMPD3	55512	ucsc.edu	37	16	68398924	68398924	+	Silent	SNP	C	C	T	rs1868158	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMPD3	NM_018667	exon4	c.G1395A	p.P465P	.	.	78	9	22	0	C|0.368;T|0.632	91
SMPDL3A	10924	bcgsc.ca	37	6	123118086	123118086	+	Silent	SNP	G	G	A	rs60203827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMPDL3A	NM_006714	exon3	c.G444A	p.A148A	.	.	227	8	65	0	G|0.969;A|0.031	90
SMPDL3A	10924	bcgsc.ca	37	6	123127486	123127486	+	Missense_Mutation	SNP	G	G	A	rs61745223	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMPDL3A	NM_006714	exon7	c.G1028A	p.R343H	.	.	219	8	82	0	G|0.983;A|0.017	90
SMR3A	26952	bcgsc.ca	37	4	71232388	71232388	+	Missense_Mutation	SNP	G	G	A	rs10031844	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMR3A	NM_012390	exon3	c.G82A	p.G28R	.	.	129	6	48	0	G|0.761;A|0.239	90
SMURF2	64750	bcgsc.ca	37	17	62579599	62579599	+	Silent	SNP	C	C	G	rs145487251	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMURF2	NM_022739	exon7	c.G549C	p.T183T	.	.	531	20	218	0	C|0.999;G|0.001	661
SMYD4	114826	bcgsc.ca	37	17	1684605	1684605	+	Missense_Mutation	SNP	G	G	T	rs58337165	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMYD4	NM_052928	exon11	c.C2390A	p.P797H	.	.	348	21	87	0	G|0.880;T|0.120	230
SMYD4	114826	bcgsc.ca	37	17	1703543	1703543	+	Missense_Mutation	SNP	G	G	C	rs3809875	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SMYD4	NM_052928	exon5	c.C1145G	p.P382R	.	.	187	17	93	0	G|0.600;C|0.400	230
SNAP91	9892	bcgsc.ca	37	6	84311105	84311105	+	Silent	SNP	T	T	C	rs116120884	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNAP91	NM_001242792	exon15	c.A1209G	p.P403P	.	.	254	10	108	0	T|0.997;C|0.003	23
SNAPC4	6621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139276526	139276526	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNAPC4	NM_003086	exon18	c.2068-1G>A	.	.	.	48	14	30	0	.	90
SNCAIP	9627	bcgsc.ca	37	5	121799261	121799261	+	Silent	SNP	C	C	G	rs149180835	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNCAIP	NM_001242935	exon10	c.C1803G	p.L601L	.	.	201	7	82	0	C|0.996;G|0.004	92
SNED1	25992	bcgsc.ca	37	2	242021742	242021742	+	Missense_Mutation	SNP	G	G	T	rs2108485	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNED1	NM_001080437	exon29	c.G4084T	p.A1362S	.	.	116	10	42	0	G|0.576;T|0.424	72
SNED1	25992	ucsc.edu;bcgsc.ca	37	2	242004866	242004866	+	Silent	SNP	A	A	G	rs2286321	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNED1	NM_001080437	exon21	c.A2865G	p.T955T	.	.	110	10	43	1	A|0.630;G|0.370	72
SNRK	54861	bcgsc.ca	37	3	43344716	43344716	+	Silent	SNP	G	G	T	rs17075517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNRK	NM_017719	exon3	c.G21T	p.G7G	.	.	257	11	110	0	G|0.965;T|0.035	815
SNRNP48	154007	bcgsc.ca	37	6	7593990	7593990	+	Silent	SNP	C	C	T	rs9502621	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNRNP48	NM_152551	exon2	c.C180T	p.Y60Y	.	.	396	21	126	0	C|0.935;T|0.065	90
SNRPB	6628	bcgsc.ca	37	20	2446369	2446369	+	Silent	SNP	T	T	A	rs8124999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNRPB	NM_003091	exon3	c.A252T	p.G84G	.	.	156	10	47	0	T|0.972;A|0.028	227
SNTG2	54221	bcgsc.ca	37	2	1204796	1204796	+	Missense_Mutation	SNP	C	C	T	rs6751090	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	SNTG2,NS,carcinoma,0	SNTG2	NM_018968	exon9	c.C599T	p.S200L	.	.	90	6	31	0	C|0.811;T|0.189	136
SNTG2	54221	bcgsc.ca	37	2	1271230	1271230	+	Missense_Mutation	SNP	A	A	G	rs13023962	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNTG2	NM_018968	exon14	c.A1171G	p.I391V	.	.	223	17	55	0	A|0.705;G|0.295	136
SNTG2	54221	bcgsc.ca	37	2	1312279	1312279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNTG2	NM_018968	exon15	c.T1298C	p.M433T	.	.	290	7	116	0	.	136
SNX15	29907	bcgsc.ca	37	11	64806270	64806270	+	Silent	SNP	C	C	T	rs542175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNX15	NM_013306	exon7	c.C891T	p.D297D	.	.	83	5	39	0	C|0.875;T|0.125	227
SNX1	6642	bcgsc.ca	37	15	64428564	64428564	+	Silent	SNP	C	C	T	rs76908230	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNX1	NM_003099	exon13	c.C1401T	p.F467F	.	.	234	9	74	0	C|0.996;T|0.004	226
SNX1	6642	hgsc.bcm.edu;bcgsc.ca	37	15	64418289	64418289	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNX1	NM_003099	exon6	c.A522T	p.P174P	.	.	168	9	69	0	.	226
SNX18	112574	bcgsc.ca	37	5	53815495	53815495	+	Missense_Mutation	SNP	A	A	C	rs2548612	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNX18	NM_052870	exon1	c.A1713C	p.E571D	.	.	162	12	81	0	A|0.480;C|0.520	226
SNX2	6643	bcgsc.ca	37	5	122165317	122165317	+	Silent	SNP	C	C	T	rs13662	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SNX2	NM_003100	exon15	c.C1534T	p.L512L	.	.	310	21	120	0	C|0.964;T|0.036	226
SOAT1	6646	bcgsc.ca	37	1	179312752	179312752	+	Silent	SNP	C	C	T	rs10753191	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SOAT1	NM_003101	exon10	c.C969T	p.V323V	.	.	205	7	79	0	C|0.768;N|0.000	515
SOAT2	8435	bcgsc.ca	37	12	53509933	53509933	+	Missense_Mutation	SNP	C	C	T	rs2272296	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SOAT2	NM_003578	exon7	c.C761T	p.T254I	.	.	168	9	59	0	C|0.751;T|0.249	91
SORBS2	8470	bcgsc.ca	37	4	186544435	186544435	+	Silent	SNP	C	C	T	rs28528960	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SORBS2	NM_001270771	exon16	c.G2436A	p.S812S	.	.	68	4	28	0	C|0.864;T|0.136	91
SORBS2	8470	ucsc.edu;bcgsc.ca	37	4	186510846	186510846	+	Silent	SNP	G	G	A	rs61733558	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SORBS2	NM_001270771	exon23	c.C3528T	p.D1176D	.	.	98	14	32	0	G|0.959;A|0.041	91
SORCS3	22986	bcgsc.ca	37	10	106865192	106865192	+	Silent	SNP	C	C	T	rs74157425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SORCS3	NM_014978	exon7	c.C1131T	p.A377A	.	.	163	12	70	0	C|0.975;T|0.025	99
SORD	6652	bcgsc.ca	37	15	45357547	45357547	+	Silent	SNP	C	C	T	rs78688742	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SORD	NM_003104	exon5	c.C504T	p.G168G	.	.	312	18	92	0	C|0.984;T|0.016	90
SORD	6652	bcgsc.ca	37	15	45361180	45361180	+	Missense_Mutation	SNP	A	A	T	rs55739437	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SORD	NM_003104	exon7	c.A716T	p.Q239L	.	.	293	11	86	0	A|0.734;T|0.266	90
SORL1	6653	bcgsc.ca	37	11	121460846	121460846	+	Silent	SNP	C	C	T	rs2276412	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SORL1	NM_003105	exon30	c.C4176T	p.N1392N	.	.	84	6	42	0	C|0.924;T|0.076	228
SOS2	6655	bcgsc.ca	37	14	50626553	50626553	+	Missense_Mutation	SNP	C	C	T	rs17122201	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SOS2	NM_006939	exon10	c.G1448A	p.S483N	.	.	307	10	107	0	C|0.971;T|0.029	849
SOWAHA	134548	bcgsc.ca	37	5	132150862	132150862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_175873	exon1	c.A1549G	p.T517A	.	.	99	6	42	0	.	.
SOWAHD	347454	ucsc.edu;bcgsc.ca	37	X	118893413	118893413	+	Silent	SNP	T	T	C	rs2782225		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001105576	exon1	c.T783C	p.S261S	.	.	72	12	43	1	T|0.366;C|0.634	.
SOX30	11063	bcgsc.ca	37	5	157053521	157053521	+	Missense_Mutation	SNP	A	A	G	rs74786572	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SOX30	NM_178424	exon5	c.T2089C	p.Y697H	.	.	243	11	76	0	A|0.993;G|0.007	91
SOX7	83595	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10583506	10583506	+	Silent	SNP	A	A	G	rs4841432	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SOX7	NM_031439	exon2	c.T909C	p.L303L	.	.	158	23	86	0	A|0.526;G|0.474	522
SP100	6672	bcgsc.ca	37	2	231372751	231372751	+	Missense_Mutation	SNP	T	T	C	rs59761827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SP100	NM_001206701	exon23	c.T2057C	p.M686T	.	.	251	11	101	0	T|0.978;C|0.022	94
SP140L	93349	bcgsc.ca	37	2	231258150	231258150	+	Missense_Mutation	SNP	C	C	T	rs7590429	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SP140L	NM_138402	exon13	c.C1129T	p.P377S	.	.	86	5	34	0	C|0.605;T|0.395	23
SP1	6667	bcgsc.ca	37	12	53777171	53777171	+	Silent	SNP	A	A	G	rs3741651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SP1	NM_138473	exon3	c.A1440G	p.Q480Q	.	.	201	8	69	0	A|0.814;G|0.186	228
SPA17	53340	bcgsc.ca	37	11	124564245	124564245	+	Missense_Mutation	SNP	A	A	G	rs36001463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPA17	NM_017425	exon5	c.A359G	p.K120R	.	.	207	15	100	1	A|0.995;G|0.005	90
SPAG16	79582	bcgsc.ca	37	2	214727221	214727221	+	Missense_Mutation	SNP	A	A	C	rs2042791	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPAG16	NM_024532	exon11	c.A1083C	p.Q361H	.	.	161	11	66	1	A|0.653;C|0.347	188
SPAG8	26206	bcgsc.ca	37	9	35811228	35811228	+	Missense_Mutation	SNP	T	T	C	rs41277075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPAG8	NM_001039592	exon2	c.A815G	p.Y272C	.	.	86	5	35	0	T|0.959;C|0.041	91
SPAG9	9043	bcgsc.ca	37	17	49083528	49083528	+	Silent	SNP	G	G	A	rs6504692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPAG9	NM_001130528	exon11	c.C1342T	p.L448L	.	.	318	13	131	0	G|0.954;A|0.046	659
SPANXE	171489	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140785799	140785799	+	Silent	SNP	C	C	T	rs16993699	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_145665	exon2	c.G117A	p.P39P	.	.	1057	142	350	0	C|0.967;0|0.003	.
SPANXN2	494119	bcgsc.ca	37	X	142795438	142795438	+	Silent	SNP	G	G	T	rs5908761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPANXN2	NM_001009615	exon2	c.C240A	p.P80P	.	.	303	23	106	0	G|0.764;T|0.236	91
SPATA13	221178	bcgsc.ca	37	13	24798333	24798333	+	Silent	SNP	C	C	T	rs17080462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPATA13	NM_001166271	exon2	c.C1266T	p.S422S	.	.	111	6	30	0	C|0.955;T|0.045	229
SPATA17	128153	bcgsc.ca	37	1	217856626	217856626	+	Silent	SNP	G	G	A	rs12068167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPATA17	NM_138796	exon5	c.G318A	p.R106R	.	.	491	26	154	0	G|0.826;A|0.174	69
SPATA31A3	727830	bcgsc.ca	37	9	40702760	40702760	+	Missense_Mutation	SNP	T	T	G	rs192661010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001083124	exon4	c.T417G	p.H139Q	.	.	422	22	184	0	T|0.744;G|0.256	.
SPATA31D1	389763	bcgsc.ca	37	9	84606251	84606251	+	Missense_Mutation	SNP	T	T	G	rs113761190	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001001670	exon4	c.T866G	p.I289S	.	.	290	22	127	0	T|0.968;G|0.032	.
SPATA31D1	389763	bcgsc.ca	37	9	84606859	84606859	+	Missense_Mutation	SNP	T	T	C	rs115088274		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001001670	exon4	c.T1474C	p.F492L	.	.	356	14	141	1	T|0.985;C|0.015	.
SPATA31D1	389763	bcgsc.ca	37	9	84607404	84607404	+	Missense_Mutation	SNP	T	T	G	rs151266667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001001670	exon4	c.T2019G	p.I673M	.	.	191	12	107	0	T|0.993;G|0.007	.
SPATA31D1	389763	bcgsc.ca	37	9	84607758	84607758	+	Silent	SNP	T	T	A	rs10867826	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001001670	exon4	c.T2373A	p.T791T	.	.	432	29	208	0	T|0.426;A|0.574	.
SPATA31D5P	347127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84528425	84528425	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	373	154	90	0	.	.
SPATA31D5P	347127	bcgsc.ca	37	9	84529966	84529966	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	83	4	48	0	.	.
SPATA31D5P	347127	bcgsc.ca	37	9	84530476	84530476	+	RNA	SNP	C	C	T	rs111520975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	518	18	149	0	C|0.992;T|0.008	.
SPATA31D5P	347127	bcgsc.ca	37	9	84531447	84531447	+	RNA	SNP	C	C	A	rs1999662	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	194	12	85	0	C|0.964;A|0.036	.
SPATC1	375686	bcgsc.ca	37	8	145094856	145094856	+	Silent	SNP	C	C	G	rs60729674	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPATC1	NM_001134374	exon2	c.C258G	p.L86L	.	.	561	14	55	0	C|0.935;G|0.065	91
SPATC1L	84221	bcgsc.ca	37	21	47588427	47588427	+	Silent	SNP	G	G	A	rs74486947		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001142854	exon3	c.C339T	p.P113P	.	.	113	6	29	0	G|0.966;A|0.034	.
SPDYE1	285955	bcgsc.ca	37	7	44046934	44046934	+	Missense_Mutation	SNP	G	G	A	rs200388629	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	SPDYE1,NS,carcinoma,-2	SPDYE1	NM_175064	exon5	c.G700A	p.G234R	.	.	421	16	234	0	G|0.981;A|0.019	91
SPDYE1	285955	bcgsc.ca	37	7	44047066	44047066	+	Missense_Mutation	SNP	T	T	C	rs79154079		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPDYE1	NM_175064	exon5	c.T832C	p.C278R	.	.	377	17	166	1	.	91
SPECC1L	23384	bcgsc.ca	37	22	24718307	24718307	+	Silent	SNP	C	C	T	rs143055101	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPECC1L	NM_001145468	exon4	c.C1359T	p.S453S	.	.	137	6	52	0	C|0.994;T|0.006	92
SPEG	10290	bcgsc.ca	37	2	220354108	220354108	+	Missense_Mutation	SNP	A	A	G	rs55760516	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPEG	NM_005876	exon36	c.A8368G	p.R2790G	.	.	180	9	38	0	A|0.648;G|0.352	383
SPEG	10290	bcgsc.ca	37	2	220354365	220354365	+	Silent	SNP	C	C	T	rs56132883	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPEG	NM_005876	exon36	c.C8625T	p.F2875F	.	.	158	10	35	0	C|0.748;T|0.252	383
SPEG	10290	bcgsc.ca	37	2	220355529	220355529	+	Missense_Mutation	SNP	A	A	G	rs12464085	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPEG	NM_005876	exon38	c.A9236G	p.H3079R	.	.	141	11	38	0	A|0.627;G|0.373	383
SPICE1	152185	bcgsc.ca	37	3	113222036	113222036	+	Silent	SNP	G	G	A	rs11537650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPICE1	NM_144718	exon3	c.C138T	p.P46P	.	.	179	8	75	0	T|0.101;G|0.441;C|0.300;A|0.159	70
SPINK5	11005	bcgsc.ca	37	5	147486672	147486672	+	Missense_Mutation	SNP	C	C	T	rs115504632		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPINK5	NM_001127699	exon17	c.C1552T	p.R518C	.	.	215	15	89	0	C|0.996;T|0.004	138
SPINT3	10816	hgsc.bcm.edu;ucsc.edu	37	20	44141410	44141410	+	Nonsense_Mutation	SNP	G	G	A	rs148191315	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_006652	exon2	c.C151T	p.R51X	.	.	104	10	46	0	G|0.999;A|0.001	.
SPOCD1	90853	hgsc.bcm.edu;bcgsc.ca	37	1	32256329	32256329	+	Missense_Mutation	SNP	G	G	A	rs36047547	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPOCD1	NM_144569	exon16	c.C3526T	p.P1176S	.	.	127	11	32	0	G|0.997;A|0.003	158
SPON2	10417	bcgsc.ca	37	4	1165748	1165748	+	Missense_Mutation	SNP	T	T	C	rs6836335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPON2	NM_012445	exon2	c.A112G	p.R38G	.	.	177	11	54	0	T|0.847;C|0.153	90
SPOPL	339745	bcgsc.ca	37	2	139316627	139316627	+	Silent	SNP	A	A	G	rs141637283	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPOPL	NM_001001664	exon6	c.A516G	p.G172G	.	.	377	11	127	0	A|0.993;G|0.007	92
SPPL3	121665	bcgsc.ca	37	12	121221518	121221518	+	Silent	SNP	C	C	T	rs60238091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_139015	exon5	c.G348A	p.P116P	.	.	384	10	199	1	C|0.905;T|0.095	.
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	101	55	31	0	A|0.000;C|0.697;T|0.303	45
SPSB3	90864	bcgsc.ca	37	16	1828501	1828501	+	Missense_Mutation	SNP	G	G	A	rs73483721	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPSB3	NM_080861	exon3	c.C239T	p.S80F	.	.	90	6	33	0	G|0.996;A|0.004	226
SPTA1	6708	bcgsc.ca	37	1	158585093	158585093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTA1	NM_003126	exon48	c.G6701A	p.S2234N	.	.	279	11	108	0	.	142
SPTA1	6708	bcgsc.ca	37	1	158587368	158587368	+	Missense_Mutation	SNP	T	T	C	rs111980420		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTA1	NM_003126	exon47	c.A6559G	p.K2187E	.	.	378	10	122	0	T|0.994;C|0.006	142
SPTA1	6708	bcgsc.ca	37	1	158606449	158606449	+	Silent	SNP	G	G	T	rs3738791	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTA1	NM_003126	exon37	c.C5292A	p.A1764A	.	.	241	8	81	0	G|0.677;T|0.323	142
SPTA1	6708	bcgsc.ca	37	1	158623103	158623103	+	Missense_Mutation	SNP	G	G	A	rs116297260		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTA1	NM_003126	exon22	c.C3149T	p.P1050L	.	.	276	10	60	0	G|0.995;A|0.005	142
SPTAN1	6709	bcgsc.ca	37	9	131362361	131362361	+	Silent	SNP	T	T	C	rs945831	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTAN1	NM_003127	exon27	c.T3546C	p.D1182D	.	.	317	12	95	0	T|0.963;C|0.037	158
SPTB	6710	ucsc.edu;bcgsc.ca	37	14	65242044	65242044	+	Silent	SNP	C	C	T	rs184528	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTB	NM_001024858	exon22	c.G4641A	p.A1547A	.	.	115	12	27	0	C|0.642;T|0.358	100
SPTBN1	6711	bcgsc.ca	37	2	54844790	54844790	+	Silent	SNP	C	C	T	rs2229506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTBN1	NM_003128	exon6	c.C612T	p.D204D	.	.	170	10	106	0	C|0.860;G|0.000;T|0.140	140
SPTBN1	6711	bcgsc.ca	37	2	54849508	54849508	+	Silent	SNP	A	A	G	rs2228365	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTBN1	NM_003128	exon9	c.A948G	p.E316E	.	.	407	21	141	0	A|0.895;G|0.105	140
SPTBN2	6712	hgsc.bcm.edu;bcgsc.ca	37	11	66481628	66481628	+	Missense_Mutation	SNP	T	T	C	rs148154681	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTBN2	NM_006946	exon6	c.A590G	p.N197S	.	.	154	7	63	0	T|1.000;C|0.000	155
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41012182	41012182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTBN4	NM_020971	exon13	c.G1705A	p.E569K	.	.	136	26	66	0	.	94
SPTLC3	55304	bcgsc.ca	37	20	12990024	12990024	+	Missense_Mutation	SNP	G	G	A	rs112329671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTLC3	NM_018327	exon1	c.G109A	p.E37K	.	.	76	6	32	0	G|0.997;A|0.003	90
SPTLC3	55304	bcgsc.ca	37	20	13071816	13071816	+	Silent	SNP	C	C	T	rs6109692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SPTLC3	NM_018327	exon5	c.C693T	p.F231F	.	.	280	8	117	0	C|0.913;T|0.087	90
SRCRB4D	136853	bcgsc.ca	37	7	76028057	76028057	+	Missense_Mutation	SNP	G	G	A	rs73361545	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SRCRB4D	NM_080744	exon5	c.C533T	p.T178M	.	.	496	16	168	0	G|0.945;A|0.055	91
SREK1IP1	285672	bcgsc.ca	37	5	64023981	64023981	+	Silent	SNP	C	C	T	rs275819	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SREK1IP1	NM_173829	exon4	c.G231A	p.K77K	.	.	388	24	174	0	T|0.623;C|0.377	23
SRGAP1	57522	bcgsc.ca	37	12	64519890	64519890	+	Silent	SNP	C	C	T	rs12303060	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SRGAP1	NM_020762	exon19	c.C2358T	p.N786N	.	.	196	9	73	0	C|0.973;T|0.027	653
SRMS	6725	bcgsc.ca	37	20	62173925	62173925	+	Silent	SNP	T	T	G	rs404613	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SRMS	NM_080823	exon4	c.A655C	p.R219R	.	.	149	12	39	0	T|0.680;G|0.320	521
SRP72	6731	bcgsc.ca	37	4	57361553	57361553	+	Silent	SNP	A	A	G	rs34419325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SRP72	NM_006947	exon17	c.A1671G	p.K557K	.	.	809	36	370	0	A|0.915;G|0.085	116
SRRM5	100170229	bcgsc.ca	37	19	44117675	44117675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145641	exon1	c.A1402T	p.N468Y	.	.	120	12	98	0	.	.
SRRT	51593	bcgsc.ca	37	7	100486110	100486110	+	Silent	SNP	C	C	T	rs11171	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SRRT	NM_015908	exon20	c.C2571T	p.D857D	.	.	438	16	155	0	C|0.905;T|0.095	92
SSBP4	170463	ucsc.edu;bcgsc.ca	37	19	18538742	18538742	+	Silent	SNP	A	A	C	rs10405636	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSBP4	NM_001009998	exon4	c.A229C	p.R77R	.	.	122	15	42	0	A|0.545;C|0.455	90
SSC5D	284297	bcgsc.ca	37	19	56011411	56011411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001195267	exon10	c.T1934C	p.V645A	.	.	105	5	49	0	.	.
SSH2	85464	bcgsc.ca	37	17	27977710	27977710	+	Silent	SNP	C	C	T	rs116740540	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSH2	NM_033389	exon12	c.G1107A	p.A369A	.	.	243	19	94	0	C|0.992;T|0.008	92
SSMEM1	0	bcgsc.ca	37	7	129855837	129855837	+	Missense_Mutation	SNP	C	C	T	rs4728190	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_145268	exon3	c.C262T	p.R88W	.	.	214	10	116	0	C|0.758;T|0.242	.
SSPN	8082	bcgsc.ca	37	12	26383959	26383959	+	Missense_Mutation	SNP	G	G	A	rs12313736	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSPN	NM_005086	exon3	c.G682A	p.V228I	.	.	77	6	38	0	G|0.913;A|0.087	90
SSPO	23145	hgsc.bcm.edu	37	7	149506160	149506160	+	Missense_Mutation	SNP	C	C	T	rs139270844		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_198455	exon63	c.C9152T	p.P3051L	.	.	198	11	55	0	C|0.994;T|0.006	.
SSPO	23145	hgsc.bcm.edu	37	7	149506195	149506195	+	Missense_Mutation	SNP	C	C	T	rs73727627	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_198455	exon63	c.C9187T	p.R3063C	.	.	247	16	63	0	C|0.978;T|0.022	.
SSR3	6747	bcgsc.ca	37	3	156262210	156262210	+	Silent	SNP	A	A	G	rs6768440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSR3	NM_007107	exon4	c.T378C	p.N126N	.	.	402	15	129	0	A|0.988;G|0.012	90
SSRP1	6749	ucsc.edu	37	11	57102096	57102096	+	Silent	SNP	A	A	G	rs2230649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSRP1	NM_003146	exon3	c.T81C	p.R27R	.	.	72	11	16	0	A|0.799;G|0.201	228
SSU72	29101	ucsc.edu	37	1	1479333	1479333	+	Silent	SNP	A	A	G	rs7533	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSU72	NM_014188	exon4	c.T399C	p.P133P	.	.	64	7	14	0	A|0.488;G|0.512	90
SSUH2	51066	ucsc.edu;bcgsc.ca	37	3	8675584	8675584	+	Missense_Mutation	SNP	G	G	A	rs116434336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015931	exon4	c.C41T	p.P14L	.	.	73	6	35	0	G|0.996;A|0.004	.
SSX1	6756	bcgsc.ca	37	X	48125798	48125798	+	Silent	SNP	T	T	C	rs75496160		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SSX1	NM_005635	exon7	c.T543C	p.S181S	.	.	1078	77	319	0	.	522
ST3GAL6	10402	bcgsc.ca	37	3	98512540	98512540	+	Missense_Mutation	SNP	G	G	A	rs28489284	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST3GAL6	NM_001271145	exon10	c.G1090A	p.A364T	.	.	137	7	89	0	G|0.949;A|0.051	91
ST6GAL1	6480	bcgsc.ca	37	3	186793423	186793423	+	Silent	SNP	C	C	T	rs7629263	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST6GAL1	NM_003032	exon7	c.C1053T	p.D351D	.	.	189	6	45	0	C|0.922;T|0.078	650
ST6GAL2	84620	bcgsc.ca	37	2	107450589	107450589	+	Silent	SNP	C	C	T	rs3796111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST6GAL2	NM_032528	exon3	c.G957A	p.A319A	.	.	178	7	72	0	C|0.716;T|0.284	191
ST6GALNAC1	55808	bcgsc.ca	37	17	74622774	74622774	+	Missense_Mutation	SNP	T	T	C	rs35948039	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST6GALNAC1	NM_018414	exon5	c.A1270G	p.I424V	.	.	208	9	61	0	T|0.973;C|0.027	90
ST6GALNAC1	55808	bcgsc.ca	37	17	74625686	74625686	+	Missense_Mutation	SNP	A	A	G	rs8077382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST6GALNAC1	NM_018414	exon2	c.T239C	p.V80A	.	.	1187	30	354	0	A|0.898;G|0.102	90
ST6GALNAC1	55808	bcgsc.ca	37	17	74625715	74625715	+	Silent	SNP	T	T	C	rs8081258	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST6GALNAC1	NM_018414	exon2	c.A210G	p.A70A	.	.	941	30	289	0	T|0.901;C|0.099	90
ST6GALNAC3	256435	bcgsc.ca	37	1	77093180	77093180	+	Missense_Mutation	SNP	C	C	A	rs1184626	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST6GALNAC3	NM_152996	exon4	c.C667A	p.L223I	.	.	235	15	79	0	C|0.543;A|0.457	95
ST7L	54879	broad.mit.edu	37	1	113093300	113093300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST7L	NM_138729	exon13	c.C1412T	p.P471L	.	.	110	26	87	2	.	90
ST8SIA2	8128	bcgsc.ca	37	15	92987938	92987938	+	Silent	SNP	C	C	G	rs2305561	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST8SIA2	NM_006011	exon5	c.C621G	p.P207P	.	.	121	8	39	0	C|0.616;G|0.384	90
ST8SIA5	29906	bcgsc.ca	37	18	44268822	44268822	+	Silent	SNP	A	A	C	rs76732091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST8SIA5	NM_013305	exon4	c.T372G	p.T124T	.	.	191	6	67	0	A|0.985;C|0.015	517
ST8SIA5	29906	bcgsc.ca	37	18	44268858	44268858	+	Silent	SNP	G	G	A	rs34504902	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ST8SIA5	NM_013305	exon4	c.C336T	p.N112N	.	.	126	5	38	0	G|0.985;A|0.015	517
STAB1	23166	bcgsc.ca	37	3	52554246	52554246	+	Silent	SNP	G	G	A	rs72947532	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAB1	NM_015136	exon52	c.G5439A	p.L1813L	.	.	143	6	42	0	G|0.974;A|0.026	139
STAB1	23166	bcgsc.ca	37	3	52558133	52558133	+	Silent	SNP	T	T	C	rs13621	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAB1	NM_015136	exon68	c.T7560C	p.D2520D	.	.	153	10	49	0	A|0.000;C|0.428;G|0.000;T|0.572	139
STAG1	10274	bcgsc.ca	37	3	136062724	136062724	+	Missense_Mutation	SNP	C	C	G	rs34149860	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAG1	NM_005862	exon30	c.G3396C	p.Q1132H	.	.	243	9	99	0	C|0.684;G|0.316	228
STAG2	10735	bcgsc.ca	37	X	123224507	123224507	+	Silent	SNP	A	A	G	rs34567090	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAG2	NM_001042749	exon31	c.A3360G	p.Q1120Q	.	.	115	6	45	0	A|0.992;G|0.008	134
STAG3	10734	bcgsc.ca	37	7	99799845	99799845	+	Silent	SNP	T	T	A	rs1043915	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAG3	NM_012447	exon24	c.T2445A	p.I815I	.	.	255	17	64	0	T|0.625;A|0.375	543
STAP1	26228	bcgsc.ca	37	4	68442968	68442968	+	Silent	SNP	A	A	G	rs11556614	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAP1	NM_012108	exon4	c.A354G	p.T118T	.	.	396	37	120	1	T|0.221;G|0.340	68
STAT2	6773	bcgsc.ca	37	12	56742997	56742997	+	Missense_Mutation	SNP	T	T	C	rs2066811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STAT2	NM_005419	exon16	c.A1390G	p.I464V	.	.	129	10	44	0	T|0.936;C|0.064	847
STEAP1B	256227	bcgsc.ca	37	7	22478207	22478207	+	Silent	SNP	G	G	T	rs2528843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001164460	exon5	c.C930A	p.A310A	.	.	89	5	32	0	G|0.487;T|0.513	.
STEAP4	79689	bcgsc.ca	37	7	87913221	87913221	+	Missense_Mutation	SNP	C	C	T	rs34741656	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STEAP4	NM_001205315	exon3	c.G364A	p.A122T	.	.	160	6	74	0	C|0.862;T|0.138	90
STIL	6491	bcgsc.ca	37	1	47726087	47726087	+	Missense_Mutation	SNP	T	T	C	rs13376679	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STIL	NM_001048166	exon16	c.A2954G	p.H985R	.	.	916	35	415	0	T|0.764;C|0.236	659
STIL	6491	bcgsc.ca	37	1	47746678	47746678	+	Silent	SNP	G	G	C	rs10789505	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STIL	NM_003035	exon12	c.C1452G	p.S484S	.	.	281	8	141	0	G|0.817;C|0.183	659
STK33	65975	bcgsc.ca	37	11	8486310	8486310	+	Silent	SNP	C	C	A	rs1446464	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK33	NM_030906	exon5	c.G399T	p.A133A	.	.	918	29	270	0	C|0.587;A|0.413	337
STK36	27148	bcgsc.ca	37	2	219544652	219544652	+	Missense_Mutation	SNP	G	G	A	rs34027859	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK36	NM_015690	exon9	c.G985A	p.D329N	.	.	155	6	104	0	G|0.987;A|0.013	1004
STK36	27148	bcgsc.ca	37	2	219555262	219555262	+	Missense_Mutation	SNP	G	G	A	rs1344642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK36	NM_015690	exon14	c.G1748A	p.R583Q	.	.	122	7	51	0	G|0.530;A|0.470	1004
STK36	27148	bcgsc.ca	37	2	219559018	219559018	+	Missense_Mutation	SNP	C	C	G	rs73079072	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK36	NM_015690	exon20	c.C2368G	p.L790V	.	.	399	10	101	0	C|0.979;G|0.021	1004
STK36	27148	bcgsc.ca	37	2	219562677	219562677	+	Missense_Mutation	SNP	G	G	A	rs55633575	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK36	NM_015690	exon25	c.G3010A	p.V1004I	.	.	266	10	68	0	G|0.945;A|0.055	1004
STK36	27148	bcgsc.ca	37	2	219563496	219563496	+	Silent	SNP	T	T	C	rs58753698	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK36	NM_015690	exon26	c.T3229C	p.L1077L	.	.	456	11	133	0	T|0.946;C|0.054	1004
STK36	27148	bcgsc.ca	37	2	219563958	219563958	+	Missense_Mutation	SNP	T	T	G	rs73079079	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STK36	NM_015690	exon26	c.T3691G	p.C1231G	.	.	197	10	73	0	T|0.946;G|0.054	1004
STON1	11037	bcgsc.ca	37	2	48807976	48807976	+	Silent	SNP	T	T	C	rs3828340	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STON1	NM_001198595	exon3	c.T204C	p.D68D	.	.	211	8	72	0	T|0.675;C|0.325	91
STON1	11037	bcgsc.ca	37	2	48808152	48808152	+	Missense_Mutation	SNP	G	G	C	rs940389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STON1	NM_001198595	exon3	c.G380C	p.R127T	.	.	152	12	71	0	G|0.659;C|0.341	91
STOX2	56977	bcgsc.ca	37	4	184932032	184932032	+	Missense_Mutation	SNP	G	G	A	rs61730748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STOX2	NM_020225	exon3	c.G2041A	p.V681I	.	.	125	7	124	0	G|0.974;A|0.026	22
STPG2	285555	bcgsc.ca	37	4	99027159	99027159	+	Missense_Mutation	SNP	T	T	C	rs28403003	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_174952	exon5	c.A557G	p.Y186C	.	.	209	11	91	0	T|0.933;C|0.067	.
STRA6	64220	bcgsc.ca	37	15	74473127	74473127	+	Silent	SNP	G	G	A	rs142048815	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STRA6	NM_001199042	exon18	c.C1953T	p.D651D	.	.	161	7	43	0	G|0.995;A|0.005	90
STRC	161497	bcgsc.ca	37	15	43892847	43892847	+	Silent	SNP	G	G	C	rs12438025	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STRC	NM_153700	exon26	c.C4878G	p.L1626L	.	.	261	7	82	0	G|0.784;C|0.216	90
STRC	161497	bcgsc.ca	37	15	43893072	43893072	+	Silent	SNP	G	G	A	rs55877445		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STRC	NM_153700	exon25	c.C4842T	p.F1614F	.	.	378	24	112	0	.	90
STRN3	29966	bcgsc.ca	37	14	31364948	31364948	+	Missense_Mutation	SNP	A	A	G	rs114922597	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STRN3	NM_001083893	exon17	c.T2144C	p.M715T	.	.	175	6	88	0	A|0.990;G|0.010	226
STX2	2054	bcgsc.ca	37	12	131306278	131306278	+	Missense_Mutation	SNP	T	T	C	rs7301926	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STX2	NM_194356	exon3	c.A161G	p.K54R	.	.	350	23	153	0	T|0.947;C|0.053	90
STX3	6809	hgsc.bcm.edu;bcgsc.ca	37	11	59564795	59564795	+	Missense_Mutation	SNP	G	G	A	rs34563654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STX3	NM_004177	exon10	c.G826A	p.G276S	.	.	411	19	183	0	G|0.991;A|0.009	92
STX5	6811	bcgsc.ca	37	11	62592961	62592961	+	Silent	SNP	T	T	C	rs2228627	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STX5	NM_003164	exon6	c.A474G	p.R158R	.	.	194	8	68	0	T|0.535;G|0.042;C|0.051;A|0.372	154
STXBP4	252983	bcgsc.ca	37	17	53077063	53077063	+	Missense_Mutation	SNP	T	T	C	rs34870302	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	STXBP4	NM_178509	exon6	c.T358C	p.C120R	.	.	407	15	183	0	T|0.933;C|0.067	91
SUCLA2	8803	hgsc.bcm.edu;bcgsc.ca	37	13	48571139	48571139	+	Missense_Mutation	SNP	A	A	C	rs62636645	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUCLA2	NM_003850	exon2	c.T110G	p.L37W	.	.	367	17	71	0	A|0.971;C|0.029	226
SUCLG2	8801	hgsc.bcm.edu;bcgsc.ca	37	3	67546244	67546244	+	Missense_Mutation	SNP	T	T	C	rs9843840	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUCLG2	NM_001177599	exon9	c.A1040G	p.K347R	.	.	162	7	59	0	T|0.980;C|0.020	227
SUCLG2	8801	hgsc.bcm.edu;bcgsc.ca	37	3	67578624	67578624	+	Missense_Mutation	SNP	C	C	T	rs13318110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUCLG2	NM_001177599	exon4	c.G349A	p.A117T	.	.	307	15	115	0	C|0.985;T|0.015	227
SUCNR1	56670	bcgsc.ca	37	3	151598946	151598946	+	Silent	SNP	C	C	T	rs143625759	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUCNR1	NM_033050	exon3	c.C615T	p.F205F	.	.	458	16	215	1	C|0.997;T|0.003	711
SUCO	51430	bcgsc.ca	37	1	172547465	172547465	+	Silent	SNP	A	A	G	rs2285664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014283	exon14	c.A1368G	p.E456E	.	.	387	28	225	0	A|0.770;G|0.230	.
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172520658	172520658	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014283	exon2	c.C69T	p.P23P	.	.	162	53	38	0	.	.
SULT1C4	27233	bcgsc.ca	37	2	108994808	108994808	+	Missense_Mutation	SNP	C	C	G	rs1402467	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SULT1C4	NM_006588	exon1	c.C15G	p.D5E	.	.	129	13	34	0	C|0.602;G|0.398	22
SUMO4	387082	ucsc.edu;bcgsc.ca	37	6	149721690	149721690	+	Missense_Mutation	SNP	G	G	A	rs237025	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUMO4	NM_001002255	exon1	c.G163A	p.V55M	.	.	148	17	62	0	G|0.397;A|0.603	108
SUPT20HL1	100130302	bcgsc.ca	37	X	24382173	24382173	+	Silent	SNP	C	C	T	rs61735228		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136234	exon1	c.C1296T	p.V432V	.	.	582	22	204	0	C|0.987;T|0.013	.
SUPT20HL1	100130302	bcgsc.ca	37	X	24382200	24382200	+	Silent	SNP	A	A	G	rs61735230	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136234	exon1	c.A1323G	p.P441P	.	.	723	25	242	0	A|0.962;G|0.038	.
SUPT20HL1	100130302	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24381387	24381387	+	Silent	SNP	G	G	C	rs1207577	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136234	exon1	c.G510C	p.T170T	.	.	669	84	268	0	G|0.448;C|0.552	.
SUPT3H	8464	bcgsc.ca	37	6	44929544	44929544	+	Missense_Mutation	SNP	T	T	C	rs149029686	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUPT3H	NM_181356	exon9	c.A559G	p.I187V	.	.	673	18	243	0	T|0.999;C|0.001	92
SUPV3L1	6832	bcgsc.ca	37	10	70940191	70940191	+	Silent	SNP	C	C	T	rs2292192	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUPV3L1	NM_003171	exon1	c.C144T	p.A48A	.	.	84	7	37	0	C|0.883;T|0.117	227
SURF4	6836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136230610	136230610	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SURF4	NM_033161	exon6	c.C569G	p.A190G	.	.	70	23	34	0	.	90
SUSD3	203328	bcgsc.ca	37	9	95840256	95840256	+	Missense_Mutation	SNP	A	A	G	rs1131773	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUSD3	NM_145006	exon3	c.A406G	p.K136E	.	.	114	6	44	0	A|0.759;G|0.241	292
SUSD5	26032	bcgsc.ca	37	3	33194990	33194990	+	Missense_Mutation	SNP	C	C	A	rs6810039	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SUSD5	NM_015551	exon5	c.G1134T	p.E378D	.	.	433	28	110	0	C|0.374;A|0.626	24
SV2B	9899	bcgsc.ca	37	15	91811749	91811749	+	Silent	SNP	G	G	A	rs3743444	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SV2B	NM_014848	exon10	c.G1287A	p.V429V	.	.	218	11	109	0	G|0.848;A|0.152	97
SV2B	9899	bcgsc.ca	37	15	91825027	91825027	+	Silent	SNP	C	C	T	rs1117388	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SV2B	NM_014848	exon11	c.C1443T	p.D481D	.	.	160	10	60	0	C|0.652;T|0.348	97
SV2B	9899	hgsc.bcm.edu;bcgsc.ca	37	15	91810850	91810850	+	Silent	SNP	G	G	C	rs140870303	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SV2B	NM_014848	exon9	c.G1185C	p.V395V	.	.	995	46	267	0	G|0.997;C|0.003	97
SVEP1	79987	bcgsc.ca	37	9	113208250	113208250	+	Missense_Mutation	SNP	T	T	G	rs7863519	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SVEP1	NM_153366	exon26	c.A4330C	p.M1444L	.	.	186	12	74	1	T|0.684;G|0.316	75
SVIL	6840	bcgsc.ca	37	10	29821523	29821523	+	Silent	SNP	T	T	C	rs1328323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SVIL	NM_021738	exon8	c.A1773G	p.K591K	.	.	171	13	48	0	C|0.381;G|0.000;T|0.619	96
SVIL	6840	bcgsc.ca	37	10	29840038	29840038	+	Silent	SNP	A	A	G	rs3740003	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SVIL	NM_003174	exon8	c.T315C	p.I105I	.	.	286	20	79	0	A|0.678;G|0.322	96
SVIL	6840	bcgsc.ca	37	10	29843833	29843833	+	Silent	SNP	C	C	T	rs1547169	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SVIL	NM_003174	exon7	c.G39A	p.G13G	.	.	157	11	59	0	C|0.740;T|0.260	96
SVIL	6840	ucsc.edu;bcgsc.ca	37	10	29840164	29840164	+	Silent	SNP	A	A	G	rs3740002	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SVIL	NM_003174	exon8	c.T189C	p.S63S	.	.	74	10	31	0	A|0.744;G|0.256	96
SYCP1	6847	hgsc.bcm.edu;bcgsc.ca	37	1	115527364	115527364	+	Missense_Mutation	SNP	C	C	T	rs150731809	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYCP1	NM_003176	exon30	c.C2578T	p.P860S	.	.	488	24	236	0	C|0.998;T|0.002	91
SYCP2	10388	bcgsc.ca	37	20	58475307	58475307	+	Silent	SNP	G	G	A	rs6027185	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYCP2	NM_014258	exon17	c.C1290T	p.V430V	.	.	254	12	136	0	G|0.919;A|0.081	525
SYCP2	10388	bcgsc.ca	37	20	58476774	58476774	+	Silent	SNP	G	G	A	rs6027186	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYCP2	NM_014258	exon15	c.C1125T	p.D375D	.	.	393	12	113	0	G|0.900;A|0.100	525
SYDE2	84144	bcgsc.ca	37	1	85624661	85624661	+	Silent	SNP	A	A	G	rs74980814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYDE2	NM_032184	exon7	c.T3357C	p.D1119D	.	.	246	12	137	0	A|0.951;G|0.049	70
SYN2	6854	bcgsc.ca	37	3	12229015	12229015	+	Missense_Mutation	SNP	A	A	G	rs794999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYN2	.	.	.	.	.	.	154	7	76	0	A|0.302;G|0.698	24
SYN3	8224	ucsc.edu;bcgsc.ca	37	22	32914089	32914089	+	Silent	SNP	A	A	G	rs12170405	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYN3	NM_003490	exon12	c.T1551C	p.R517R	.	.	109	12	44	0	A|0.962;G|0.038	92
SYNE1	23345	bcgsc.ca	37	6	152470752	152470752	+	Missense_Mutation	SNP	C	C	A	rs17082236	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNE1	NM_182961	exon136	c.G24502T	p.A8168S	.	.	231	9	57	0	C|0.878;A|0.122	607
SYNE1	23345	bcgsc.ca	37	6	152792803	152792803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNE1	NM_033071	exon16	c.T1582C	p.S528P	.	.	159	5	44	0	.	607
SYNE2	23224	bcgsc.ca	37	14	64447776	64447776	+	Missense_Mutation	SNP	T	T	C	rs9944035	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNE2	NM_182914	exon16	c.T1721C	p.I574T	.	.	196	13	91	0	T|0.889;C|0.111	164
SYNE2	23224	bcgsc.ca	37	14	64469890	64469890	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNE2	NM_182914	exon30	c.A4239G	p.T1413T	.	.	109	5	49	0	.	164
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64492098	64492098	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNE2	NM_182914	exon41	c.G6211C	p.E2071Q	.	.	90	38	57	0	.	164
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64656855	64656855	+	Silent	SNP	T	T	C	rs2256191	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNE2	NM_182914	exon99	c.T17938C	p.L5980L	.	.	199	21	80	0	T|0.498;C|0.502	164
SYNE3	161176	bcgsc.ca	37	14	95918625	95918625	+	Silent	SNP	T	T	C	rs4905318	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152592	exon6	c.A1233G	p.P411P	.	.	90	5	33	0	T|0.562;C|0.438	.
SYNE3	161176	hgsc.bcm.edu	37	14	95916347	95916348	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152592	exon7	c.1370_1371insG	p.A457fs	.	.	146	12	66	0	.	.
SYNGAP1	8831	bcgsc.ca	37	6	33411299	33411299	+	Silent	SNP	C	C	T	rs61421477	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNGAP1	NM_006772	exon15	c.C2970T	p.S990S	.	.	70	4	29	0	C|0.942;T|0.058	48
SYNJ2	8871	bcgsc.ca	37	6	158499302	158499302	+	Silent	SNP	G	G	T	rs2296507	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNJ2	NM_003898	exon18	c.G2556T	p.A852A	.	.	209	18	94	0	G|0.445;T|0.555	227
SYNJ2	8871	bcgsc.ca	37	6	158505088	158505088	+	Silent	SNP	A	A	G	rs1744173	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNJ2	NM_003898	exon22	c.A3090G	p.G1030G	.	.	100	8	43	0	A|0.153;G|0.847	227
SYNJ2	8871	ucsc.edu;bcgsc.ca	37	6	158509750	158509750	+	Silent	SNP	A	A	G	rs350289	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNJ2	NM_003898	exon24	c.A3402G	p.G1134G	.	.	88	10	30	0	A|0.147;G|0.853	227
SYNM	23336	bcgsc.ca	37	15	99670265	99670265	+	Missense_Mutation	SNP	C	C	T	rs3743244	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNM	.	.	.	.	.	.	79	8	40	0	A|0.000;C|0.864;T|0.135	26
SYNM	23336	bcgsc.ca	37	15	99670518	99670518	+	Silent	SNP	T	T	C	rs1670227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNM	.	.	.	.	.	.	130	6	67	0	T|0.745;C|0.255	26
SYNRG	11276	bcgsc.ca	37	17	35902390	35902390	+	Silent	SNP	T	T	G	rs61753647	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYNRG	NM_007247	exon15	c.A2886C	p.P962P	.	.	169	13	74	0	G|0.058;T|0.942	92
SYT10	341359	bcgsc.ca	37	12	33535395	33535395	+	Missense_Mutation	SNP	G	G	C	rs35190376	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYT10	NM_198992	exon5	c.C1259G	p.T420S	.	.	481	15	185	0	G|0.677;C|0.323	92
SYT10	341359	bcgsc.ca	37	12	33579408	33579408	+	Silent	SNP	A	A	T	rs10844596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYT10	NM_198992	exon2	c.T174A	p.A58A	.	.	120	10	62	0	A|0.868;T|0.132	92
SYT10	341359	ucsc.edu;bcgsc.ca	37	12	33579297	33579297	+	Silent	SNP	C	C	G	rs11052695	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYT10	NM_198992	exon2	c.G285C	p.T95T	.	.	232	23	119	0	C|0.867;G|0.133;T|0.000	92
SYT11	23208	bcgsc.ca	37	1	155850379	155850379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYT11	NM_152280	exon3	c.A950G	p.H317R	.	.	169	6	62	0	.	92
SYT2	127833	bcgsc.ca	37	1	202565948	202565948	+	Silent	SNP	G	G	A	rs504261	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYT2	NM_177402	exon9	c.C1197T	p.I399I	.	.	114	6	32	0	G|0.655;A|0.345	93
SYT6	148281	bcgsc.ca	37	1	114680540	114680540	+	Silent	SNP	C	C	T	rs17032441	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYT6	NM_205848	exon3	c.G393A	p.S131S	.	.	351	18	114	0	C|0.783;N|0.001	94
SYTL2	54843	bcgsc.ca	37	11	85445236	85445236	+	Missense_Mutation	SNP	T	T	C	rs74337189	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYTL2	NM_001162953	exon6	c.A1136G	p.Q379R	.	.	260	19	127	2	T|0.970;C|0.030	137
SYTL2	54843	bcgsc.ca	37	11	85445453	85445453	+	Missense_Mutation	SNP	T	T	C	rs77076792	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYTL2	NM_001162953	exon6	c.A919G	p.I307V	.	.	237	10	93	0	T|0.982;C|0.018	137
SYTL4	94121	mdanderson.org	37	X	99955925	99955925	+	Silent	SNP	T	T	C	rs16983588	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYTL4	NM_001129896	exon6	c.A507G	p.R169R	.	.	223	26	47	1	0|0.004;C|0.166	132
SYTL5	94122	bcgsc.ca	37	X	37967868	37967868	+	Silent	SNP	T	T	C	rs5918476	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SYTL5	NM_001163334	exon12	c.T1416C	p.Y472Y	.	.	318	26	160	0	T|0.570;C|0.430	131
SZT2	23334	bcgsc.ca	37	1	43911565	43911565	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	SZT2	NM_015284	exon62	c.C8655T	p.S2885S	.	.	64	5	34	0	.	144
T	6862	ucsc.edu;bcgsc.ca	37	6	166580188	166580188	+	Silent	SNP	G	G	A	rs1056048	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	T	NM_003181	exon3	c.C363T	p.S121S	.	.	97	10	51	0	G|0.749;A|0.251	516
TAAR1	134864	bcgsc.ca	37	6	132966348	132966348	+	Silent	SNP	G	G	A	rs8192619	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAAR1	NM_138327	exon1	c.C795T	p.C265C	.	.	250	13	139	0	G|0.935;A|0.065	90
TAAR2	9287	bcgsc.ca	37	6	132938817	132938817	+	Silent	SNP	G	G	A	rs61745666	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAAR2	NM_001033080	exon2	c.C528T	p.F176F	.	.	111	7	58	0	A|0.164;G|0.836;T|0.000	91
TAAR5	9038	bcgsc.ca	37	6	132910612	132910612	+	Silent	SNP	G	G	A	rs3813355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAAR5	NM_003967	exon1	c.C214T	p.L72L	.	.	102	6	50	0	G|0.342;A|0.658	91
TAAR6	319100	bcgsc.ca	37	6	132892332	132892332	+	Missense_Mutation	SNP	G	G	A	rs8192625	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAAR6	NM_175067	exon1	c.G872A	p.C291Y	.	.	359	12	154	0	G|0.930;A|0.070	93
TAAR6	319100	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	132892143	132892143	+	Missense_Mutation	SNP	C	C	T	rs17061409	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAAR6	NM_175067	exon1	c.C683T	p.A228V	.	.	100	9	61	0	C|0.946;T|0.054	93
TAB3	257397	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	30872578	30872578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAB3	NM_152787	exon6	c.G1204C	p.A402P	.	.	183	15	91	0	.	131
TACR2	6865	bcgsc.ca	37	10	71176012	71176012	+	Missense_Mutation	SNP	A	A	G	rs5030920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TACR2	NM_001057	exon1	c.T68C	p.I23T	.	.	144	13	50	0	A|0.748;G|0.252	522
TAF10	6881	bcgsc.ca	37	11	6632450	6632450	+	Silent	SNP	C	C	T	rs12451	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF10	NM_006284	exon4	c.G537A	p.T179T	.	.	292	8	73	0	C|0.817;T|0.183	90
TAF1A	9015	bcgsc.ca	37	1	222753212	222753212	+	Missense_Mutation	SNP	A	A	C	rs17163271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF1A	NM_005681	exon4	c.T294G	p.I98M	.	.	111	5	78	0	A|0.968;C|0.032	44
TAF1A	9015	bcgsc.ca	37	1	222757625	222757625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF1A	NM_005681	exon3	c.A136G	p.R46G	.	.	83	4	32	0	.	44
TAF1C	9013	bcgsc.ca	37	16	84212853	84212853	+	Silent	SNP	G	G	C	rs4150174	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF1C	NM_005679	exon14	c.C2304G	p.P768P	.	.	71	7	36	0	G|0.624;C|0.376	91
TAF1L	138474	bcgsc.ca	37	9	32630472	32630472	+	Silent	SNP	T	T	C	rs10758145	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF1L	NM_153809	exon1	c.A5106G	p.K1702K	.	.	259	19	137	0	T|0.672;C|0.328	870
TAF1L	138474	bcgsc.ca	37	9	32631369	32631369	+	Silent	SNP	C	C	T	rs10971047	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF1L	NM_153809	exon1	c.G4209A	p.T1403T	.	.	490	26	287	1	C|0.873;T|0.127	870
TAF1L	138474	hgsc.bcm.edu;bcgsc.ca	37	9	32630282	32630282	+	Missense_Mutation	SNP	T	T	C	rs61736667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF1L	NM_153809	exon1	c.A5296G	p.I1766V	.	.	424	23	220	0	T|0.988;C|0.012	870
TAF2	6873	bcgsc.ca	37	8	120744349	120744349	+	Missense_Mutation	SNP	T	T	C	rs956748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF2	NM_003184	exon26	c.A3415G	p.T1139A	.	.	629	14	151	1	T|0.823;C|0.177	274
TAF2	6873	bcgsc.ca	37	8	120790304	120790304	+	Silent	SNP	T	T	C	rs1509348	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF2	NM_003184	exon18	c.A2319G	p.T773T	.	.	921	35	187	0	T|0.408;C|0.592	274
TAF2	6873	bcgsc.ca	37	8	120793296	120793296	+	Silent	SNP	C	C	T	rs7002501	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF2	NM_003184	exon17	c.G2250A	p.Q750Q	.	.	199	6	49	0	C|0.713;T|0.287	274
TAF5L	27097	bcgsc.ca	37	1	229738296	229738296	+	Silent	SNP	G	G	A	rs35136694	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF5L	NM_001025247	exon4	c.C618T	p.D206D	.	.	165	8	85	0	G|0.993;A|0.007	91
TAF7L	54457	bcgsc.ca	37	X	100532621	100532621	+	Missense_Mutation	SNP	T	T	C	rs35899692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAF7L	NM_024885	exon9	c.A922G	p.S308G	.	.	117	9	46	0	0|0.013;C|0.185	130
TANK	10010	bcgsc.ca	37	2	162087835	162087835	+	Missense_Mutation	SNP	G	G	A	rs10183668	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TANK	NM_004180	exon7	c.G874A	p.G292R	.	.	241	10	140	0	G|0.955;A|0.045	228
TAOK1	57551	hgsc.bcm.edu;bcgsc.ca	37	17	27802783	27802783	+	Silent	SNP	A	A	G	rs147203802	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAOK1	NM_025142	exon4	c.A300G	p.T100T	.	.	333	17	111	0	A|0.998;G|0.002	521
TAPBP	6892	bcgsc.ca	37	6	33271573	33271573	+	Silent	SNP	T	T	C	rs73410025	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAPBP	NM_172208	exon7	c.A1494G	p.G498G	.	.	127	8	70	0	T|0.980;C|0.020	23
TAPBPL	55080	bcgsc.ca	37	12	6562753	6562753	+	Missense_Mutation	SNP	A	A	G	rs2532501	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAPBPL	NM_018009	exon3	c.A436G	p.M146V	.	.	124	5	29	0	A|0.341;G|0.659	90
TAPT1	202018	bcgsc.ca	37	4	16215451	16215451	+	Silent	SNP	C	C	T	rs6823623	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAPT1	NM_153365	exon2	c.G270A	p.K90K	.	.	269	11	115	0	C|0.863;T|0.137	90
TARBP1	6894	bcgsc.ca	37	1	234603386	234603386	+	Silent	SNP	G	G	T	rs270502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TARBP1	NM_005646	exon4	c.C1110A	p.L370L	.	.	219	8	93	0	G|0.791;T|0.209	93
TARM1	441864	bcgsc.ca	37	19	54577266	54577266	+	Silent	SNP	G	G	A	rs138729841	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001135686	exon4	c.C564T	p.A188A	.	.	161	8	37	0	G|0.995;A|0.005	.
TAS2R10	50839	bcgsc.ca	37	12	10978242	10978242	+	Silent	SNP	C	C	T	rs12307411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R10	NM_023921	exon1	c.G627A	p.S209S	.	.	153	11	86	0	C|0.927;T|0.073	90
TAS2R13	50838	bcgsc.ca	37	12	11061122	11061122	+	Missense_Mutation	SNP	T	T	C	rs1015443	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R13	NM_023920	exon1	c.A776G	p.N259S	.	.	186	7	92	0	T|0.499;C|0.501	154
TAS2R19	259294	bcgsc.ca	37	12	11174753	11174753	+	Silent	SNP	G	G	A	rs1868769	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R19	NM_176888	exon1	c.C418T	p.L140L	.	.	229	10	166	0	G|0.293;A|0.707	91
TAS2R30	259293	bcgsc.ca	37	12	11286088	11286088	+	Missense_Mutation	SNP	A	A	C	rs2599404	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001097643	exon1	c.T756G	p.F252L	.	.	353	12	192	0	A|0.579;C|0.421	.
TAS2R30	259293	bcgsc.ca	37	12	11286790	11286790	+	Silent	SNP	A	A	C	rs2600355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001097643	exon1	c.T54G	p.V18V	.	.	343	11	137	0	A|0.635;C|0.365	.
TAS2R31	259290	bcgsc.ca	37	12	11183108	11183108	+	Missense_Mutation	SNP	G	G	C	rs74807793		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.C827G	p.P276R	.	.	610	24	300	1	.	.
TAS2R31	259290	bcgsc.ca	37	12	11183217	11183217	+	Missense_Mutation	SNP	C	C	T	rs10772423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.G718A	p.V240I	.	.	466	13	256	0	C|0.591;T|0.409	.
TAS2R31	259290	bcgsc.ca	37	12	11183255	11183255	+	Missense_Mutation	SNP	G	G	A	rs10845293	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.C680T	p.A227V	.	.	448	11	238	0	G|0.597;A|0.403	.
TAS2R31	259290	bcgsc.ca	37	12	11183286	11183286	+	Missense_Mutation	SNP	G	G	C	rs10845294	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.C649G	p.Q217E	.	.	386	9	217	0	G|0.834;C|0.166	.
TAS2R31	259290	bcgsc.ca	37	12	11183336	11183336	+	Missense_Mutation	SNP	C	C	T	rs74062424		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.G599A	p.C200Y	.	.	317	11	158	0	C|0.994;T|0.006	.
TAS2R31	259290	bcgsc.ca	37	12	11183451	11183451	+	Missense_Mutation	SNP	A	A	T	rs10743938	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.T484A	p.L162M	.	.	294	13	137	1	A|0.239;C|0.001;T|0.760	.
TAS2R31	259290	bcgsc.ca	37	12	11183832	11183832	+	Missense_Mutation	SNP	G	G	A	rs10845295	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_176885	exon1	c.C103T	p.R35W	.	.	371	20	168	0	G|0.582;A|0.418	.
TAS2R42	353164	bcgsc.ca	37	12	11338781	11338781	+	Missense_Mutation	SNP	C	C	A	rs1669413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R42	NM_181429	exon1	c.G763T	p.G255W	.	.	137	8	104	0	C|0.252;A|0.748	69
TAS2R4	50832	bcgsc.ca	37	7	141478296	141478296	+	Missense_Mutation	SNP	G	G	A	rs2233995	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R4	NM_016944	exon1	c.G8A	p.R3Q	.	.	285	10	132	0	G|0.987;A|0.013	90
TAS2R46	259292	bcgsc.ca	37	12	11214212	11214212	+	Missense_Mutation	SNP	A	A	T	rs2708380	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R46	NM_176887	exon1	c.T682A	p.L228M	.	.	423	12	186	0	A|0.387;T|0.613	1
TAS2R46	259292	bcgsc.ca	37	12	11214360	11214360	+	Silent	SNP	C	C	T	rs73260771	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R46	NM_176887	exon1	c.G534A	p.T178T	.	.	300	8	147	0	C|0.833;T|0.167	1
TAS2R46	259292	bcgsc.ca	37	12	11214383	11214383	+	Missense_Mutation	SNP	C	C	T	rs115475128		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R46	NM_176887	exon1	c.G511A	p.A171T	.	.	276	7	128	0	C|0.999;T|0.001	1
TAS2R50	259296	bcgsc.ca	37	12	11138683	11138683	+	Silent	SNP	C	C	T	rs10772397	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TAS2R50	NM_176890	exon1	c.G777A	p.P259P	.	.	230	12	140	0	C|0.483;T|0.517	92
TBC1D10B	26000	bcgsc.ca	37	16	30376486	30376486	+	Silent	SNP	T	T	C	rs8049108	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015527	exon3	c.A1104G	p.K368K	.	.	143	5	30	0	T|0.608;C|0.392	.
TBC1D10C	374403	bcgsc.ca	37	11	67174151	67174151	+	Missense_Mutation	SNP	C	C	T	rs74706151	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D10C	NM_001256508	exon7	c.C632T	p.T211M	.	.	199	16	40	0	C|0.965;T|0.035	90
TBC1D12	23232	bcgsc.ca	37	10	96260023	96260023	+	Silent	SNP	C	C	T	rs61737860	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D12	NM_015188	exon6	c.C1458T	p.P486P	.	.	218	11	96	0	C|0.994;T|0.006	68
TBC1D1	23216	bcgsc.ca	37	4	38054737	38054737	+	Missense_Mutation	SNP	C	C	T	rs58983546	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D1	NM_001253912	exon13	c.C2083T	p.R695C	.	.	636	32	239	0	C|0.910;T|0.090	91
TBC1D13	54662	bcgsc.ca	37	9	131550655	131550655	+	Silent	SNP	A	A	G	rs35557291	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D13	NM_018201	exon2	c.A66G	p.A22A	.	.	190	6	64	0	A|0.955;G|0.045	90
TBC1D13	54662	ucsc.edu;bcgsc.ca	37	9	131565554	131565554	+	Missense_Mutation	SNP	T	T	C	rs1572912	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D13	NM_018201	exon8	c.T569C	p.V190A	.	.	164	21	60	0	T|0.535;C|0.464	90
TBC1D15	64786	bcgsc.ca	37	12	72307616	72307616	+	Silent	SNP	A	A	G	rs3759171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D15	NM_022771	exon13	c.A1362G	p.Q454Q	.	.	130	13	43	0	A|0.446;G|0.554	90
TBC1D17	79735	bcgsc.ca	37	19	50387750	50387750	+	Silent	SNP	G	G	C	rs2305915	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D17	NM_024682	exon12	c.G1278C	p.P426P	.	.	330	14	91	0	G|0.734;C|0.266	90
TBC1D20	128637	bcgsc.ca	37	20	428553	428553	+	Missense_Mutation	SNP	T	T	C	rs36088178	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D20	NM_144628	exon2	c.A236G	p.N79S	.	.	129	6	33	0	T|0.953;C|0.047	90
TBC1D25	4943	ucsc.edu;bcgsc.ca	37	X	48418659	48418659	+	Missense_Mutation	SNP	G	G	A	rs235836	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D25	NM_002536	exon6	c.G1363A	p.A455T	.	.	100	12	38	0	G|0.442;A|0.558	131
TBC1D2	55357	bcgsc.ca	37	9	101006338	101006338	+	Silent	SNP	A	A	T	rs61752516	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D2	NM_001267571	exon3	c.T585A	p.A195A	.	.	84	8	38	0	A|0.949;T|0.051	93
TBC1D29	26083	hgsc.bcm.edu;bcgsc.ca	37	17	28887185	28887185	+	Silent	SNP	G	G	A	rs9900264	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D29	NM_015594	exon2	c.G63A	p.R21R	.	.	342	18	99	0	G|0.960;A|0.040	22
TBC1D3P1-DHX40P1	653645	bcgsc.ca	37	17	58053395	58053395	+	RNA	SNP	T	T	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	992	41	435	0	.	.
TBC1D4	9882	bcgsc.ca	37	13	75861001	75861001	+	Missense_Mutation	SNP	A	A	G	rs557337	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D4	NM_014832	exon21	c.T3824C	p.V1275A	.	.	650	31	217	0	A|0.827;G|0.173	95
TBC1D8B	54885	bcgsc.ca	37	X	106061924	106061924	+	Silent	SNP	G	G	A	rs6523896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D8B	NM_198881	exon2	c.G162A	p.L54L	.	.	113	9	36	0	0|0.003;A|0.095	133
TBC1D8B	54885	hgsc.bcm.edu;bcgsc.ca	37	X	106083331	106083331	+	Silent	SNP	A	A	G	rs73531168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D8B	NM_198881	exon9	c.A1407G	p.G469G	.	.	379	19	153	0	A|0.917;G|0.083	133
TBC1D8B	54885	hgsc.bcm.edu;bcgsc.ca	37	X	106097460	106097460	+	Silent	SNP	T	T	C	rs7886676	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBC1D8B	NM_017752	exon14	c.T2286C	p.H762H	.	.	262	24	101	0	T|0.903;C|0.097	133
TBCD	6904	bcgsc.ca	37	17	80863857	80863857	+	Missense_Mutation	SNP	T	T	C	rs2292971	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBCD	NM_005993	exon20	c.T1850C	p.M617T	.	.	133	8	34	0	T|0.550;C|0.450	22
TBCK	93627	bcgsc.ca	37	4	107151587	107151587	+	Silent	SNP	A	A	G	rs56312801	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBCK	NM_001163436	exon19	c.T1707C	p.C569C	.	.	134	6	54	0	A|0.943;G|0.057	336
TBL1X	6907	bcgsc.ca	37	X	9679669	9679669	+	Silent	SNP	G	G	A	rs5979158	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBL1X	NM_001139466	exon16	c.G1458A	p.T486T	.	.	261	10	63	0	G|0.986;A|0.014	131
TBL3	10607	bcgsc.ca	37	16	2025206	2025206	+	Silent	SNP	A	A	C	rs8053843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBL3	NM_006453	exon8	c.A654C	p.I218I	.	.	145	8	50	0	A|0.782;C|0.218	90
TBL3	10607	bcgsc.ca	37	16	2025411	2025411	+	Silent	SNP	G	G	C	rs12925447	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBL3	NM_006453	exon9	c.G777C	p.G259G	.	.	140	9	33	1	G|0.918;C|0.082	90
TBL3	10607	bcgsc.ca	37	16	2028402	2028402	+	Silent	SNP	A	A	C	rs8460	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBL3	NM_006453	exon21	c.A2223C	p.R741R	.	.	42	4	34	1	A|0.593;C|0.407	90
TBP	6908	bcgsc.ca	37	6	170878793	170878793	+	Silent	SNP	T	T	C	rs1042327	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBP	NM_003194	exon6	c.T771C	p.N257N	.	.	259	10	78	0	T|0.400;C|0.600	91
TBRG4	9238	bcgsc.ca	37	7	45141654	45141654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBRG4	NM_001261834	exon8	c.A1370G	p.K457R	.	.	62	4	38	0	.	90
TBX22	50945	bcgsc.ca	37	X	79282268	79282268	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBX22	NM_016954	exon5	c.T699C	p.V233V	.	.	89	4	35	0	.	628
TBX22	50945	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79281202	79281202	+	Missense_Mutation	SNP	G	G	A	rs34244923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TBX22	NM_016954	exon4	c.G559A	p.E187K	.	.	139	20	47	0	G|0.961;A|0.039	628
TCEA1	6917	bcgsc.ca	37	8	54906239	54906239	+	Silent	SNP	T	T	G	rs140433206		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCEA1	NM_006756	exon4	c.A309C	p.A103A	.	.	752	16	160	0	T|0.996;G|0.004	661
TCEAL4	79921	bcgsc.ca	37	X	102842041	102842041	+	Silent	SNP	T	T	C	rs11010	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCEAL4	NM_001006935	exon3	c.T438C	p.H146H	.	.	121	10	68	0	0|0.006;C|0.292	130
TCEANC	170082	hgsc.bcm.edu;bcgsc.ca	37	X	13681057	13681057	+	Silent	SNP	T	T	C	rs7061978	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCEANC	NM_152634	exon4	c.T520C	p.L174L	.	.	118	8	45	0	T|0.962;C|0.038	41
TCEB3	6924	bcgsc.ca	37	1	24077554	24077554	+	Silent	SNP	T	T	C	rs35397069	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCEB3	NM_003198	exon4	c.T537C	p.D179D	.	.	189	10	71	0	T|0.913;C|0.087	91
TCF20	6942	bcgsc.ca	37	22	42607817	42607817	+	Missense_Mutation	SNP	C	C	T	rs17002890	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCF20	NM_181492	exon1	c.G3495A	p.M1165I	.	.	194	8	76	0	C|0.967;T|0.033	95
TCF20	6942	bcgsc.ca	37	22	42609872	42609872	+	Silent	SNP	A	A	C	rs17002894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCF20	NM_181492	exon1	c.T1440G	p.T480T	.	.	194	6	70	0	A|0.967;C|0.033	95
TCN1	6947	bcgsc.ca	37	11	59623433	59623433	+	Silent	SNP	G	G	A	rs1042613	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCN1	NM_001062	exon6	c.C846T	p.S282S	.	.	181	9	52	0	G|0.704;A|0.296	92
TCN2	6948	bcgsc.ca	37	22	31006860	31006860	+	Missense_Mutation	SNP	A	A	G	rs9606756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCN2	NM_001184726	exon2	c.A67G	p.I23V	.	.	174	6	41	0	A|0.885;G|0.115	90
TCN2	6948	bcgsc.ca	37	22	31011610	31011610	+	Missense_Mutation	SNP	G	G	C	rs1801198	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCN2	NM_000355	exon6	c.G776C	p.R259P	.	.	112	5	31	0	G|0.390;C|0.610	90
TCP10	6953	hgsc.bcm.edu;bcgsc.ca	37	6	167786673	167786673	+	Missense_Mutation	SNP	T	T	C	rs181671268		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCP10	NM_004610	exon8	c.A965G	p.Q322R	.	.	171	9	77	0	T|0.999;C|0.001	89
TCP10L	140290	bcgsc.ca	37	21	33951068	33951068	+	Missense_Mutation	SNP	T	T	C	rs9622	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TCP10L	NM_144659	exon4	c.A434G	p.H145R	.	.	569	27	203	0	T|0.791;C|0.209	90
TDGF1	6997	bcgsc.ca	37	3	46622629	46622629	+	Silent	SNP	T	T	C	rs112928637	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDGF1	NM_003212	exon6	c.T456C	p.L152L	.	.	144	5	63	0	T|0.972;C|0.028	90
TDP1	55775	bcgsc.ca	37	14	90459822	90459822	+	Silent	SNP	C	C	T	rs147837596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDP1	NM_018319	exon14	c.C1536T	p.V512V	.	.	140	6	78	0	C|0.999;T|0.001	92
TDRD10	126668	bcgsc.ca	37	1	154516477	154516477	+	Missense_Mutation	SNP	G	G	A	rs12750774	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD10	NM_182499	exon9	c.G542A	p.R181Q	.	.	260	9	72	0	G|0.809;A|0.191	91
TDRD10	126668	bcgsc.ca	37	1	154516944	154516944	+	Missense_Mutation	SNP	C	C	T	rs150373758	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD10	NM_182499	exon10	c.C748T	p.R250C	.	.	157	6	56	0	C|0.998;T|0.002	91
TDRD12	91646	bcgsc.ca	37	19	33240734	33240734	+	Missense_Mutation	SNP	A	A	G	rs7260392	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001110822	exon6	c.A541G	p.T181A	.	.	109	7	67	0	A|0.968;G|0.032	.
TDRD5	163589	bcgsc.ca	37	1	179562792	179562792	+	Missense_Mutation	SNP	G	G	A	rs77758448	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD5	NM_173533	exon3	c.G430A	p.A144T	.	.	745	32	330	0	G|0.949;A|0.051	94
TDRD6	221400	bcgsc.ca	37	6	46658905	46658905	+	Missense_Mutation	SNP	C	C	G	rs9381472	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD6	NM_001168359	exon1	c.C3040G	p.Q1014E	.	.	65	6	55	0	C|0.649;G|0.351	138
TDRD7	23424	bcgsc.ca	37	9	100234702	100234702	+	Silent	SNP	A	A	G	rs115297535	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD7	NM_014290	exon10	c.A1869G	p.S623S	.	.	191	12	76	0	A|0.989;G|0.011	93
TDRD9	122402	bcgsc.ca	37	14	104436931	104436931	+	Silent	SNP	C	C	T	rs11851097	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD9	NM_153046	exon6	c.C819T	p.L273L	.	.	133	7	51	0	C|0.648;T|0.352	70
TDRD9	122402	bcgsc.ca	37	14	104452640	104452640	+	Silent	SNP	G	G	A	rs10143389	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD9	NM_153046	exon8	c.G1098A	p.L366L	.	.	309	11	117	0	G|0.674;A|0.326	70
TDRD9	122402	bcgsc.ca	37	14	104497543	104497543	+	Silent	SNP	C	C	T	rs10135507	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TDRD9	NM_153046	exon29	c.C3381T	p.L1127L	.	.	171	5	55	0	C|0.684;T|0.316	70
TECTA	7007	bcgsc.ca	37	11	121030928	121030928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TECTA	NM_005422	exon14	c.A4774G	p.T1592A	.	.	131	5	38	0	.	225
TECTA	7007	bcgsc.ca	37	11	121038909	121038909	+	Silent	SNP	T	T	G	rs516678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TECTA	NM_005422	exon18	c.T5733G	p.V1911V	.	.	409	9	175	0	T|0.960;G|0.040	225
TEK	7010	bcgsc.ca	37	9	27158010	27158010	+	Silent	SNP	G	G	A	rs55892210	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEK	NM_000459	exon2	c.G234A	p.V78V	.	.	153	10	115	0	G|0.986;A|0.014	1584
TEK	7010	bcgsc.ca	37	9	27205021	27205021	+	Silent	SNP	G	G	A	rs542913	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEK	NM_000459	exon14	c.G2322A	p.R774R	.	.	182	9	85	0	G|0.808;A|0.192	1584
TEKT1	83659	bcgsc.ca	37	17	6716242	6716242	+	Missense_Mutation	SNP	G	G	A	rs3744395	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEKT1	NM_053285	exon6	c.C760T	p.R254C	.	.	233	9	52	0	G|0.790;A|0.210	92
TEKT1	83659	bcgsc.ca	37	17	6733672	6733672	+	Silent	SNP	T	T	C	rs8078571	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEKT1	NM_053285	exon2	c.A24G	p.P8P	.	.	462	27	216	0	T|0.415;C|0.585	92
TEKT3	64518	bcgsc.ca	37	17	15215660	15215660	+	Silent	SNP	T	T	C	rs2286516	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEKT3	NM_031898	exon7	c.A1017G	p.Q339Q	.	.	210	7	68	0	T|0.770;C|0.230	92
TENM1	10178	bcgsc.ca	37	X	123554331	123554331	+	Silent	SNP	C	C	T	rs139935272	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163278	exon25	c.G4812A	p.P1604P	.	.	100	6	46	0	C|0.995;T|0.005	.
TENM1	10178	bcgsc.ca	37	X	124097564	124097564	+	Silent	SNP	T	T	C	rs143307335	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163278	exon1	c.A39G	p.P13P	.	.	359	28	102	0	T|0.986;C|0.014	.
TENM2	57451	bcgsc.ca	37	5	167645888	167645888	+	Silent	SNP	T	T	C	rs1363560	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001122679	exon23	c.T4965C	p.N1655N	.	.	169	7	71	0	T|0.589;C|0.411	.
TENM4	26011	bcgsc.ca	37	11	78380739	78380739	+	Silent	SNP	G	G	A	rs61747204	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001098816	exon32	c.C6651T	p.Y2217Y	.	.	188	6	102	0	G|0.983;A|0.017	.
TENM4	26011	bcgsc.ca	37	11	78574128	78574128	+	Missense_Mutation	SNP	C	C	G	rs111280970		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001098816	exon10	c.G1134C	p.Q378H	.	.	128	6	59	0	C|0.993;G|0.007	.
TEP1	7011	bcgsc.ca	37	14	20837701	20837701	+	Missense_Mutation	SNP	G	G	C	rs938886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEP1	NM_007110	exon53	c.C7458G	p.I2486M	.	.	820	32	332	0	G|0.702;C|0.297	95
TES	26136	bcgsc.ca	37	7	115897392	115897392	+	Silent	SNP	G	G	C	rs4710	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TES	NM_015641	exon7	c.G1122C	p.R374R	.	.	259	18	88	0	T|0.000;G|0.612;C|0.388	514
TESPA1	9840	bcgsc.ca	37	12	55356404	55356404	+	Silent	SNP	G	G	A	rs61733024	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001098815	exon9	c.C1278T	p.A426A	.	.	656	33	132	1	G|0.986;A|0.014	.
TET2	54790	bcgsc.ca	37	4	106158189	106158189	+	Silent	SNP	G	G	A	rs10516517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TET2	NM_001127208	exon3	c.G3090A	p.Q1030Q	.	.	220	7	99	0	G|0.969;A|0.031	4618
TET2	54790	bcgsc.ca	37	4	106190862	106190862	+	Silent	SNP	T	T	C	rs3733609	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	TET2,NS,haematopoietic_neoplasm,+2	TET2	NM_001127208	exon9	c.T4140C	p.H1380H	.	.	242	8	64	0	T|0.867;C|0.133	4618
TEX15	56154	bcgsc.ca	37	8	30702525	30702525	+	Missense_Mutation	SNP	A	A	C	rs323344	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEX15	NM_031271	exon1	c.T4009G	p.L1337V	.	.	144	14	141	2	A|0.700;C|0.300	97
TEX15	56154	bcgsc.ca	37	8	30702602	30702602	+	Missense_Mutation	SNP	T	T	C	rs323345	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEX15	NM_031271	exon1	c.A3932G	p.N1311S	.	.	211	18	176	0	T|0.707;C|0.293	97
TEX15	56154	hgsc.bcm.edu;bcgsc.ca	37	8	30703066	30703066	+	Silent	SNP	G	G	A	rs61736164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEX15	NM_031271	exon1	c.C3468T	p.S1156S	.	.	221	14	142	0	G|0.986;A|0.014	97
TEX2	55852	bcgsc.ca	37	17	62290990	62290990	+	Silent	SNP	C	C	T	rs111854160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEX2	NM_018469	exon2	c.G588A	p.S196S	.	.	203	9	55	1	C|0.996;T|0.004	91
TEX2	55852	bcgsc.ca	37	17	62291096	62291096	+	Missense_Mutation	SNP	G	G	A	rs112665037	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEX2	NM_018469	exon2	c.C482T	p.S161F	.	.	118	6	62	0	G|0.996;A|0.004	91
TEX2	55852	bcgsc.ca	37	17	62291105	62291105	+	Missense_Mutation	SNP	G	G	A	rs28605685	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TEX2	NM_018469	exon2	c.C473T	p.T158I	.	.	113	9	65	0	G|0.937;A|0.063	91
TFAP2E	339488	bcgsc.ca	37	1	36056346	36056346	+	Missense_Mutation	SNP	A	A	C	rs201780685		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TFAP2E	NM_178548	exon6	c.A1016C	p.H339P	.	.	62	21	32	0	.	90
TFB1M	51106	bcgsc.ca	37	6	155581434	155581434	+	Missense_Mutation	SNP	C	C	T	rs73579353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TFB1M	NM_016020	exon6	c.G767A	p.R256Q	.	.	178	9	66	0	C|0.992;T|0.008	91
TFCP2L1	29842	ucsc.edu;bcgsc.ca	37	2	121981950	121981950	+	Silent	SNP	A	A	G	rs11890430	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TFCP2L1	NM_014553	exon15	c.T1407C	p.D469D	.	.	98	11	45	0	A|0.666;G|0.334	93
TFDP1	7027	bcgsc.ca	37	13	114277541	114277541	+	Silent	SNP	C	C	T	rs4150756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TFDP1	NM_007111	exon4	c.C126T	p.L42L	.	.	166	7	41	0	C|0.982;T|0.018	416
TFG	10342	bcgsc.ca	37	3	100467018	100467018	+	Silent	SNP	T	T	C	rs11353	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TFG	NM_006070	exon8	c.T846C	p.P282P	.	.	342	18	144	0	T|0.339;C|0.661	861
TFPI	7035	bcgsc.ca	37	2	188343497	188343497	+	Missense_Mutation	SNP	T	T	C	rs7586970	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TFPI	NM_001032281	exon7	c.A662G	p.N221S	.	.	129	8	44	0	T|0.703;C|0.297	91
TGFBR3	7049	bcgsc.ca	37	1	92327045	92327045	+	Missense_Mutation	SNP	G	G	A	rs1805110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGFBR3	NM_001195684	exon3	c.C44T	p.S15F	.	.	265	20	125	0	G|0.841;A|0.159	93
TGIF2LX	90316	bcgsc.ca	37	X	89177673	89177673	+	Missense_Mutation	SNP	G	G	A	rs2290380	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGIF2LX	NM_138960	exon2	c.G589A	p.V197I	.	.	218	10	111	0	G|0.233;A|0.767	92
TGM4	7047	bcgsc.ca	37	3	44926860	44926860	+	Silent	SNP	C	C	T	rs34630572	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGM4	NM_003241	exon2	c.C63T	p.A21A	.	.	326	12	88	0	C|0.977;T|0.023	91
TGM5	9333	ucsc.edu	37	15	43531411	43531411	+	Missense_Mutation	SNP	G	G	C	rs28756768	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGM5	NM_201631	exon8	c.C1055G	p.A352G	.	.	74	7	26	0	G|0.789;C|0.211	90
TGM7	116179	bcgsc.ca	37	15	43571390	43571390	+	Silent	SNP	C	C	G	rs567357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGM7	NM_052955	exon11	c.G1764C	p.A588A	.	.	129	9	65	0	C|0.491;G|0.509	92
TGOLN2	10618	bcgsc.ca	37	2	85549874	85549874	+	Missense_Mutation	SNP	A	A	G	rs3637	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGOLN2	NM_001206841	exon4	c.T1316C	p.F439S	.	.	126	6	101	0	A|0.637;G|0.363	22
TGS1	96764	bcgsc.ca	37	8	56698935	56698935	+	Missense_Mutation	SNP	A	A	G	rs3213971	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TGS1	NM_024831	exon4	c.A478G	p.I160V	.	.	652	13	171	0	A|0.982;G|0.018	227
THADA	63892	bcgsc.ca	37	2	43518843	43518843	+	Missense_Mutation	SNP	A	A	G	rs17030648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THADA	NM_001083953	exon34	c.T5002C	p.C1668R	.	.	295	14	98	0	A|0.958;G|0.042	228
THADA	63892	bcgsc.ca	37	2	43732823	43732823	+	Missense_Mutation	SNP	T	T	C	rs7578597	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THADA	NM_001083953	exon24	c.A3559G	p.T1187A	.	.	260	20	91	0	T|0.871;C|0.129	228
THADA	63892	bcgsc.ca	37	2	43804229	43804229	+	Silent	SNP	T	T	C	rs13021894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THADA	NM_001083953	exon10	c.A969G	p.G323G	.	.	148	10	57	0	T|0.636;C|0.364	228
THADA	63892	bcgsc.ca	37	2	43805739	43805739	+	Silent	SNP	C	C	T	rs61754256	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THADA	NM_001083953	exon9	c.G729A	p.L243L	.	.	200	6	75	0	C|0.866;T|0.134	228
THADA	63892	bcgsc.ca	37	2	43819139	43819139	+	Silent	SNP	A	A	G	rs17031095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THADA	NM_001083953	exon3	c.T123C	p.H41H	.	.	217	6	88	0	A|0.885;G|0.115	228
THAP7-AS1	439931	bcgsc.ca	37	22	21363744	21363744	+	RNA	SNP	T	T	C	rs2075276	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	223	11	79	0	C|0.308;N|0.001	.
THBS2	7058	bcgsc.ca	37	6	169621536	169621536	+	Silent	SNP	A	A	G	rs1132742	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THBS2	NM_003247	exon21	c.T3360C	p.T1120T	.	.	193	22	70	0	G|0.241;N|0.001	95
THG1L	54974	bcgsc.ca	37	5	157158553	157158553	+	Silent	SNP	C	C	T	rs2270817	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THG1L	NM_017872	exon1	c.C105T	p.F35F	.	.	148	8	49	0	C|0.913;T|0.087	90
THNSL1	79896	hgsc.bcm.edu;bcgsc.ca	37	10	25312306	25312306	+	Missense_Mutation	SNP	C	C	A	rs73608227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THNSL1	NM_024838	exon3	c.C154A	p.L52I	.	.	230	22	126	0	C|0.982;A|0.018	91
THOC5	8563	bcgsc.ca	37	22	29908025	29908025	+	Silent	SNP	G	G	A	rs16987733	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THOC5	NM_001002878	exon19	c.C1782T	p.N594N	.	.	225	8	50	0	G|0.970;A|0.030	585
THRAP3	9967	bcgsc.ca	37	1	36752245	36752245	+	Silent	SNP	G	G	A	rs2937374	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THRAP3	NM_005119	exon4	c.G414A	p.R138R	.	.	80	7	62	0	G|0.964;A|0.036	663
THRAP3	9967	bcgsc.ca	37	1	36754663	36754663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THRAP3	NM_005119	exon5	c.A1043G	p.Y348C	.	.	79	4	56	0	.	663
THSD7A	221981	bcgsc.ca	37	7	11501652	11501652	+	Silent	SNP	C	C	A	rs7807697	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7A	NM_015204	exon10	c.G2487T	p.A829A	.	.	176	9	64	0	C|0.988;A|0.012	71
THSD7A	221981	bcgsc.ca	37	7	11581134	11581134	+	Silent	SNP	T	T	C	rs2074603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7A	NM_015204	exon6	c.A1734G	p.A578A	.	.	269	14	97	1	T|0.532;C|0.468	71
THSD7A	221981	bcgsc.ca	37	7	11675795	11675795	+	Silent	SNP	A	A	G	rs61996272		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7A	NM_015204	exon2	c.T984C	p.V328V	.	.	735	19	228	0	A|0.981;G|0.019	71
THSD7A	221981	bcgsc.ca	37	7	11675855	11675855	+	Silent	SNP	C	C	T	rs61996273	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7A	NM_015204	exon2	c.G924A	p.R308R	.	.	814	56	285	0	C|0.879;T|0.121	71
THSD7A	221981	bcgsc.ca	37	7	11676377	11676377	+	Silent	SNP	G	G	A	rs2074598	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7A	NM_015204	exon2	c.C402T	p.P134P	.	.	224	9	105	0	G|0.745;N|0.000	71
THSD7A	221981	hgsc.bcm.edu;bcgsc.ca	37	7	11419287	11419287	+	Silent	SNP	C	C	T	rs17164530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7A	NM_015204	exon24	c.G4560A	p.P1520P	.	.	158	10	73	0	C|0.987;T|0.013	71
THSD7B	80731	bcgsc.ca	37	2	137917922	137917922	+	Missense_Mutation	SNP	T	T	A	rs4954474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7B	.	.	.	.	.	.	312	13	67	0	T|0.686;A|0.314	75
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138329990	138329990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THSD7B	.	.	.	.	.	.	304	102	137	0	.	75
THUMPD1	55623	bcgsc.ca	37	16	20748331	20748331	+	Missense_Mutation	SNP	C	C	A	rs11074471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	THUMPD1	NM_017736	exon4	c.G933T	p.E311D	.	.	1191	41	303	0	C|0.868;A|0.132	90
TICRR	90381	bcgsc.ca	37	15	90135325	90135325	+	Missense_Mutation	SNP	C	C	T	rs143515773		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152259	exon5	c.C1459T	p.P487S	.	.	244	17	105	0	C|0.994;T|0.006	.
TICRR	90381	bcgsc.ca	37	15	90167903	90167903	+	Silent	SNP	T	T	C	rs78363401	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152259	exon20	c.T4362C	p.P1454P	.	.	74	4	33	0	T|0.975;C|0.025	.
TIMELESS	8914	bcgsc.ca	37	12	56814653	56814653	+	Missense_Mutation	SNP	G	G	A	rs2291739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TIMELESS	NM_003920	exon25	c.C3053T	p.P1018L	.	.	151	8	61	0	G|0.548;A|0.452	159
TIMMDC1	51300	ucsc.edu;bcgsc.ca	37	3	119219573	119219573	+	Missense_Mutation	SNP	A	A	G	rs11539377	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TIMMDC1	NM_016589	exon2	c.A226G	p.N76D	.	.	282	26	87	0	A|0.828;G|0.172	91
TINAG	27283	bcgsc.ca	37	6	54219421	54219421	+	Missense_Mutation	SNP	G	G	A	rs34011963	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TINAG	NM_014464	exon9	c.G1237A	p.V413I	.	.	251	12	133	0	G|0.982;A|0.018	93
TJP2	9414	bcgsc.ca	37	9	71841018	71841018	+	Silent	SNP	A	A	G	rs17062695	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TJP2	NM_001170416	exon7	c.A1230G	p.L410L	.	.	288	13	132	0	A|0.907;G|0.093	115
TJP2	9414	bcgsc.ca	37	9	71861675	71861675	+	Missense_Mutation	SNP	A	A	G	rs75450131	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TJP2	NM_001170416	exon18	c.A2729G	p.Q910R	.	.	157	10	69	0	A|0.998;G|0.002	115
TJP2	9414	ucsc.edu;bcgsc.ca	37	9	71835842	71835842	+	Missense_Mutation	SNP	C	C	A	rs41305539	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TJP2	NM_001170416	exon5	c.C475A	p.Q159K	.	.	105	10	56	0	C|0.892;A|0.108	115
TJP3	27134	bcgsc.ca	37	19	3750622	3750622	+	Silent	SNP	A	A	C	rs1046271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TJP3	NM_001267561	exon21	c.A2727C	p.V909V	.	.	185	10	56	0	A|0.434;C|0.566	92
TLE6	79816	bcgsc.ca	37	19	2982150	2982150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLE6	NM_001143986	exon5	c.A185G	p.H62R	.	.	105	8	27	0	.	91
TLE6	79816	bcgsc.ca	37	19	2989697	2989697	+	Silent	SNP	T	T	C	rs6510730	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLE6	NM_001143986	exon13	c.T1158C	p.D386D	.	.	205	16	53	0	T|0.637;C|0.363	91
TLL1	7092	bcgsc.ca	37	4	166999164	166999164	+	Silent	SNP	T	T	C	rs17047232	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLL1	NM_012464	exon18	c.T2424C	p.P808P	.	.	107	7	49	0	T|0.937;C|0.063	158
TLN2	83660	bcgsc.ca	37	15	63047793	63047793	+	Silent	SNP	C	C	T	rs4775538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLN2	NM_015059	exon34	c.C4539T	p.I1513I	.	.	132	6	46	0	C|0.774;T|0.226	573
TLR10	81793	bcgsc.ca	37	4	38776303	38776303	+	Silent	SNP	T	T	C	rs11466652	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR10	NM_001017388	exon2	c.A909G	p.K303K	.	.	274	11	108	0	T|0.814;C|0.186	522
TLR10	81793	bcgsc.ca	37	4	38776491	38776491	+	Missense_Mutation	SNP	T	T	G	rs11096957	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR10	NM_001017388	exon2	c.A721C	p.N241H	.	.	195	14	108	1	T|0.541;G|0.459	522
TLR10	81793	bcgsc.ca	37	4	38777173	38777173	+	Silent	SNP	A	A	T	rs10856838	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR10	NM_001017388	exon2	c.T39A	p.I13I	.	.	266	10	77	0	A|0.630;T|0.370	522
TLR2	7097	hgsc.bcm.edu;bcgsc.ca	37	4	154625685	154625685	+	Silent	SNP	C	C	G	rs5743701	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR2	NM_003264	exon3	c.C1626G	p.L542L	.	.	321	13	62	0	C|0.989;G|0.011	523
TLR3	7098	bcgsc.ca	37	4	187005865	187005865	+	Silent	SNP	C	C	T	rs73873710	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR3	NM_003265	exon5	c.C2553T	p.F851F	.	.	328	17	128	0	C|0.941;T|0.059	524
TLR6	10333	bcgsc.ca	37	4	38830116	38830116	+	Missense_Mutation	SNP	C	C	T	rs3796508	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR6	NM_006068	exon2	c.G979A	p.V327M	.	.	161	8	59	0	C|0.981;T|0.019	524
TLR6	10333	bcgsc.ca	37	4	38830736	38830736	+	Missense_Mutation	SNP	A	A	G	rs5743808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR6	NM_006068	exon2	c.T359C	p.I120T	.	.	181	12	74	0	A|0.959;G|0.041	524
TLR7	51284	ucsc.edu;bcgsc.ca	37	X	12906714	12906714	+	Silent	SNP	A	A	G	rs5741881	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR7	NM_016562	exon3	c.A3087G	p.L1029L	.	.	93	16	50	0	A|0.913;0|0.014	564
TLR8	51311	bcgsc.ca	37	X	12937804	12937804	+	Silent	SNP	C	C	T	rs5744080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR8	NM_138636	exon2	c.C645T	p.H215H	.	.	189	16	56	0	C|0.402;0|0.003	629
TLR8	51311	bcgsc.ca	37	X	12939112	12939112	+	Silent	SNP	G	G	C	rs2407992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR8	NM_138636	exon2	c.G1953C	p.L651L	.	.	183	18	82	0	0|0.007;C|0.614	629
TLR8	51311	ucsc.edu;bcgsc.ca	37	X	12937237	12937237	+	Silent	SNP	C	C	T	rs5744078	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR8	NM_138636	exon2	c.C78T	p.A26A	.	.	137	14	57	0	C|0.914;0|0.007	629
TLR8	51311	ucsc.edu;bcgsc.ca	37	X	12938471	12938471	+	Silent	SNP	C	C	A	rs5744081	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TLR8	NM_138636	exon2	c.C1312A	p.R438R	.	.	82	10	45	0	0|0.006;A|0.088	629
TM4SF5	9032	bcgsc.ca	37	17	4686414	4686414	+	Silent	SNP	A	A	C	rs3851	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TM4SF5	NM_003963	exon5	c.A585C	p.T195T	.	.	199	9	63	0	A|0.629;C|0.371	91
TM6SF2	53345	bcgsc.ca	37	19	19380993	19380993	+	Silent	SNP	G	G	A	rs78386089	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TM6SF2	NM_001001524	exon4	c.C390T	p.A130A	.	.	151	6	53	0	G|0.989;A|0.011	44
TMC2	117532	bcgsc.ca	37	20	2591232	2591232	+	Silent	SNP	C	C	T	rs6050576	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMC2	NM_080751	exon12	c.C1581T	p.D527D	.	.	203	13	93	0	C|0.711;T|0.289	93
TMC5	79838	bcgsc.ca	37	16	19460888	19460888	+	Missense_Mutation	SNP	G	G	A	rs16972013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMC5	NM_001105249	exon5	c.G983A	p.S328N	.	.	314	10	133	0	G|0.986;A|0.014	91
TMC6	11322	bcgsc.ca	37	17	76121864	76121864	+	Missense_Mutation	SNP	A	A	G	rs2748427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMC6	NM_001127198	exon5	c.T373C	p.W125R	.	.	112	8	46	0	A|0.702;G|0.298	90
TMC7	79905	hgsc.bcm.edu	37	16	19051741	19051741	+	Missense_Mutation	SNP	G	G	A	rs73528934	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMC7	NM_024847	exon9	c.G1310A	p.G437D	.	.	97	8	25	0	G|0.979;A|0.021	93
TMCC2	9911	bcgsc.ca	37	1	205238716	205238716	+	Silent	SNP	C	C	T	rs7538074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMCC2	NM_014858	exon3	c.C1386T	p.S462S	.	.	109	7	32	0	C|0.978;T|0.022	91
TMCO3	55002	bcgsc.ca	37	13	114154419	114154419	+	Silent	SNP	G	G	A	rs2260159	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMCO3	NM_017905	exon4	c.G771A	p.K257K	.	.	207	10	85	0	G|0.796;A|0.204	90
TMCO3	55002	bcgsc.ca	37	13	114156093	114156093	+	Silent	SNP	C	C	T	rs2260080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMCO3	NM_017905	exon5	c.C843T	p.S281S	.	.	287	11	112	1	C|0.772;T|0.228	90
TMED6	146456	bcgsc.ca	37	16	69381769	69381769	+	Silent	SNP	C	C	T	rs16958777	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMED6	NM_144676	exon3	c.G411A	p.G137G	.	.	344	18	90	0	C|0.926;T|0.074	91
TMED8	283578	bcgsc.ca	37	14	77810046	77810046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMED8	NM_213601	exon4	c.A448G	p.R150G	.	.	160	5	62	0	.	90
TMEM106B	54664	bcgsc.ca	37	7	12269417	12269417	+	Missense_Mutation	SNP	C	C	G	rs3173615	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM106B	NM_001134232	exon5	c.C554G	p.T185S	.	.	534	40	232	0	C|0.481;G|0.519	90
TMEM132A	54972	bcgsc.ca	37	11	60703403	60703403	+	Missense_Mutation	SNP	G	G	A	rs524523	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM132A	NM_017870	exon11	c.G2099A	p.R700H	.	.	197	11	71	0	G|0.918;A|0.082	227
TMEM133	83935	bcgsc.ca	37	11	100863319	100863319	+	Missense_Mutation	SNP	A	A	C	rs61995873	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM133	NM_032021	exon1	c.A280C	p.N94H	.	.	168	7	81	0	A|0.949;C|0.051	90
TMEM155	132332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122681517	122681517	+	Missense_Mutation	SNP	T	T	A	rs145109523	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM155	NM_152399	exon6	c.A325T	p.I109L	.	.	277	87	95	0	T|1.000;C|0.000	90
TMEM159	57146	bcgsc.ca	37	16	21185354	21185354	+	Missense_Mutation	SNP	T	T	C	rs35345508	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM159	NM_020422	exon4	c.T289C	p.F97L	.	.	482	18	110	2	T|0.974;C|0.026	69
TMEM171	134285	bcgsc.ca	37	5	72419267	72419267	+	Missense_Mutation	SNP	T	T	C	rs638333	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM171	NM_173490	exon2	c.T67C	p.F23L	.	.	439	18	181	1	T|0.788;C|0.212	68
TMEM181	57583	bcgsc.ca	37	6	159026379	159026379	+	Silent	SNP	T	T	C	rs16900870	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM181	NM_020823	exon7	c.T984C	p.T328T	.	.	178	8	44	0	T|0.976;C|0.024	70
TMEM184A	202915	bcgsc.ca	37	7	1589552	1589552	+	Silent	SNP	G	G	A	rs10275771		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM184A	NM_001097620	exon6	c.C582T	p.P194P	.	.	136	9	30	0	G|0.986;A|0.014	90
TMEM192	201931	bcgsc.ca	37	4	166021811	166021811	+	Silent	SNP	G	G	C	rs6536890	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM192	NM_001100389	exon3	c.C408G	p.L136L	.	.	248	12	95	0	G|0.671;C|0.329	69
TMEM198	130612	bcgsc.ca	37	2	220414019	220414019	+	Silent	SNP	T	T	C	rs13023533	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM198	NM_001005209	exon4	c.T888C	p.P296P	.	.	197	11	70	0	T|0.559;C|0.441	23
TMEM200A	114801	bcgsc.ca	37	6	130761795	130761795	+	Silent	SNP	T	T	C	rs9492593	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM200A	NM_001258277	exon3	c.T228C	p.I76I	.	.	252	10	153	0	T|0.995;C|0.005	23
TMEM200A	114801	bcgsc.ca	37	6	130761804	130761804	+	Silent	SNP	C	C	T	rs12200105	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM200A	NM_001258277	exon3	c.C237T	p.A79A	.	.	213	6	138	2	C|0.743;T|0.257	23
TMEM200A	114801	bcgsc.ca	37	6	130762377	130762377	+	Silent	SNP	C	C	T	rs17059033	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM200A	NM_001258277	exon3	c.C810T	p.S270S	.	.	161	8	57	0	C|0.995;T|0.005	23
TMEM201	199953	hgsc.bcm.edu;bcgsc.ca	37	1	9661189	9661189	+	Silent	SNP	G	G	A	rs141781360	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM201	NM_001010866	exon5	c.G633A	p.P211P	.	.	250	12	75	0	G|0.988;A|0.012	68
TMEM204	79652	bcgsc.ca	37	16	1584294	1584294	+	Silent	SNP	C	C	T	rs79579867		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM204	NM_024600	exon1	c.C18T	p.L6L	.	.	178	7	67	0	C|0.979;T|0.021	90
TMEM208	29100	bcgsc.ca	37	16	67262775	67262775	+	Silent	SNP	C	C	T	rs1140380	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014187	exon5	c.C375T	p.F125F	.	.	290	21	101	0	C|0.914;T|0.086	.
TMEM2	23670	bcgsc.ca	37	9	74305098	74305098	+	Missense_Mutation	SNP	C	C	T	rs2297089	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM2	NM_013390	exon22	c.G3761A	p.S1254N	.	.	62	4	33	0	C|0.911;T|0.089	92
TMEM2	23670	bcgsc.ca	37	9	74332968	74332968	+	Silent	SNP	G	G	A	rs111777728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM2	NM_013390	exon13	c.C2295T	p.P765P	.	.	93	6	60	0	G|0.999;A|0.001	92
TMEM2	23670	bcgsc.ca	37	9	74347303	74347303	+	Silent	SNP	T	T	C	rs80145528	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM2	NM_013390	exon7	c.A1527G	p.Q509Q	.	.	189	9	77	0	T|0.991;C|0.009	92
TMEM225	338661	bcgsc.ca	37	11	123754791	123754791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM225	NM_001013743	exon3	c.T454C	p.S152P	.	.	58	4	29	0	.	93
TMEM230	29058	bcgsc.ca	37	20	5086939	5086939	+	Silent	SNP	A	A	T	rs6116651	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001009923	exon4	c.T306A	p.P102P	.	.	115	5	53	0	A|0.852;T|0.148	.
TMEM232	642987	bcgsc.ca	37	5	109904162	109904162	+	Missense_Mutation	SNP	T	T	C	rs1488596	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039763	exon11	c.A1441G	p.I481V	.	.	717	33	387	0	T|0.986;C|0.014	.
TMEM232	642987	bcgsc.ca	37	5	109954164	109954164	+	Missense_Mutation	SNP	C	C	T	rs61978570	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039763	exon8	c.G868A	p.V290I	.	.	344	10	75	0	C|0.979;T|0.021	.
TMEM232	642987	bcgsc.ca	37	5	109960989	109960989	+	Silent	SNP	A	A	G	rs61730920	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039763	exon7	c.T747C	p.Y249Y	.	.	289	11	177	0	A|0.859;G|0.141	.
TMEM240	339453	bcgsc.ca	37	1	1475087	1475087	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001114748	exon2	c.C141T	p.R47R	.	.	99	11	77	0	.	.
TMEM25	84866	bcgsc.ca	37	11	118404804	118404804	+	Silent	SNP	G	G	A	rs6589664	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM25	NM_032780	exon7	c.G897A	p.P299P	.	.	105	5	57	0	G|0.738;A|0.262	90
TMEM30B	161291	bcgsc.ca	37	14	61747119	61747119	+	Missense_Mutation	SNP	G	G	C	rs28731324	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM30B	NM_001017970	exon1	c.C747G	p.D249E	.	.	178	8	64	1	G|0.967;C|0.033	90
TMEM39B	55116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32560397	32560397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM39B	NM_018056	exon7	c.T940C	p.Y314H	.	.	220	93	82	0	.	90
TMEM44	93109	bcgsc.ca	37	3	194336333	194336333	+	Silent	SNP	A	A	G	rs144775506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM44	NM_001166305	exon8	c.T1018C	p.L340L	.	.	438	16	124	0	A|0.997;G|0.003	90
TMEM60	85025	ucsc.edu;bcgsc.ca	37	7	77423574	77423574	+	Silent	SNP	G	G	A	rs7953	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM60	NM_032936	exon2	c.C117T	p.F39F	.	.	129	13	54	0	G|0.424;A|0.576	90
TMEM70	54968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74893799	74893799	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM70	NM_017866	exon3	c.A726G	p.E242E	.	.	185	20	59	0	.	91
TMEM70	54968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74893820	74893820	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM70	NM_017866	exon3	c.A747C	p.E249D	.	.	121	15	48	0	.	91
TMEM72	643236	ucsc.edu;bcgsc.ca	37	10	45430394	45430394	+	Missense_Mutation	SNP	G	G	A	rs73279307	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM72	NM_001123376	exon5	c.G640A	p.D214N	.	.	68	9	26	0	G|0.987;A|0.013	90
TMEM88B	643965	ucsc.edu;bcgsc.ca	37	1	1361555	1361555	+	Silent	SNP	T	T	C	rs1695848	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001146685	exon1	c.T48C	p.G16G	.	.	66	7	32	0	G|0.172;C|0.000	.
TMEM98	26022	bcgsc.ca	37	17	31260255	31260255	+	Silent	SNP	C	C	T	rs29019	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMEM98	NM_001033504	exon3	c.C195T	p.D65D	.	.	139	8	59	0	C|0.920;T|0.080	90
TMF1	7110	hgsc.bcm.edu;bcgsc.ca	37	3	69079037	69079037	+	Silent	SNP	T	T	C	rs61737464		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMF1	NM_007114	exon11	c.A2523G	p.E841E	.	.	325	13	101	0	T|0.994;C|0.006	90
TMPRSS11E	28983	bcgsc.ca	37	4	69343287	69343287	+	Missense_Mutation	SNP	A	A	G	rs976002	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS11E	NM_014058	exon8	c.A908G	p.Y303C	.	.	1086	45	423	3	A|0.777;G|0.223	70
TMPRSS12	283471	bcgsc.ca	37	12	51236802	51236802	+	Missense_Mutation	SNP	T	T	C	rs10876100	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_182559	exon1	c.T55C	p.Y19H	.	.	141	7	70	0	T|0.715;C|0.285	.
TMPRSS13	84000	bcgsc.ca	37	11	117789462	117789462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS13	NM_001206790	exon2	c.A113G	p.Q38R	.	.	70	2	38	0	.	91
TMPRSS3	64699	bcgsc.ca	37	21	43803167	43803167	+	Missense_Mutation	SNP	T	T	C	rs2839500	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS3	NM_001256317	exon8	c.A757G	p.I253V	.	.	46	4	29	0	A|0.006;C|0.194	155
TMPRSS3	64699	bcgsc.ca	37	21	43805637	43805637	+	Silent	SNP	C	C	T	rs2839501	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS3	NM_001256317	exon6	c.G453A	p.V151V	.	.	107	10	49	0	A|0.004;C|0.505;G|0.004;T|0.487	155
TMPRSS5	80975	bcgsc.ca	37	11	113561054	113561054	+	Missense_Mutation	SNP	A	A	G	rs7110736	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS5	NM_030770	exon11	c.T1105C	p.F369L	.	.	155	10	37	0	A|0.249;G|0.751	1
TMPRSS5	80975	bcgsc.ca	37	11	113561057	113561057	+	Silent	SNP	A	A	G	rs7110738	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS5	NM_030770	exon11	c.T1102C	p.L368L	.	.	153	10	38	0	A|0.259;G|0.741	1
TMPRSS7	344805	bcgsc.ca	37	3	111799810	111799810	+	Missense_Mutation	SNP	G	G	T	rs202054476		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMPRSS7	NM_001042575	exon16	c.G2033T	p.W678L	.	.	769	28	355	1	.	70
TMTC4	84899	bcgsc.ca	37	13	101257380	101257380	+	Silent	SNP	A	A	G	rs61995746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMTC4	NM_032813	exon19	c.T2151C	p.R717R	.	.	354	13	124	0	A|0.997;G|0.003	155
TMTC4	84899	bcgsc.ca	37	13	101288980	101288980	+	Silent	SNP	G	G	A	rs61733530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TMTC4	NM_032813	exon10	c.C1008T	p.N336N	.	.	246	9	111	0	G|0.995;A|0.005	155
TNC	3371	bcgsc.ca	37	9	117826152	117826152	+	Missense_Mutation	SNP	G	G	A	rs141044950		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNC	NM_002160	exon12	c.C3683T	p.A1228V	.	.	169	9	61	0	G|1.000;A|0.000	517
TNFAIP3	7128	bcgsc.ca	37	6	138196066	138196066	+	Missense_Mutation	SNP	T	T	G	rs2230926	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFAIP3	NM_001270507	exon3	c.T380G	p.F127C	.	.	200	17	78	0	T|0.857;G|0.143	1498
TNFRSF10D	8793	bcgsc.ca	37	8	22995448	22995448	+	Silent	SNP	G	G	A	rs34427213	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF10D	NM_003840	exon9	c.C1096T	p.L366L	.	.	185	6	83	0	G|0.994;A|0.006	651
TNFRSF10D	8793	bcgsc.ca	37	8	22995487	22995487	+	Missense_Mutation	SNP	G	G	T	rs112449156	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF10D	NM_003840	exon9	c.C1057A	p.L353M	.	.	162	5	72	0	G|0.994;T|0.006	651
TNFRSF13B	23495	bcgsc.ca	37	17	16842912	16842912	+	Silent	SNP	A	A	G	rs11078355	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF13B	NM_012452	exon5	c.T831C	p.S277S	.	.	166	6	42	0	A|0.484;G|0.516	228
TNFRSF17	608	hgsc.bcm.edu;bcgsc.ca	37	16	12060114	12060114	+	Missense_Mutation	SNP	A	A	G	rs11570147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF17	NM_001192	exon2	c.A193G	p.I65V	.	.	370	15	125	0	A|0.998;G|0.002	1083
TNFRSF21	27242	bcgsc.ca	37	6	47251758	47251758	+	Missense_Mutation	SNP	C	C	T	rs115625609	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF21	NM_014452	exon3	c.G1159A	p.A387T	.	.	375	24	132	0	C|0.975;T|0.025	227
TNFRSF25	8718	bcgsc.ca	37	1	6524501	6524501	+	Missense_Mutation	SNP	T	T	C	rs11800462	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF25	NM_003790	exon5	c.A476G	p.D159G	.	.	108	11	40	0	T|0.895;C|0.105	714
TNFRSF25	8718	bcgsc.ca	37	1	6525592	6525592	+	Missense_Mutation	SNP	C	C	T	rs35771371	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF25	NM_148967	exon2	c.G68A	p.R23Q	.	.	134	13	80	0	C|0.967;T|0.033	714
TNFRSF8	943	bcgsc.ca	37	1	12186058	12186058	+	Missense_Mutation	SNP	A	A	G	rs2230625	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFRSF8	NM_001243	exon11	c.A1204G	p.S402G	.	.	448	21	156	1	A|0.922;G|0.078	654
TNFSF4	7292	bcgsc.ca	37	1	173157676	173157676	+	Silent	SNP	G	G	A	rs141837753	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNFSF4	NM_003326	exon2	c.C186T	p.I62I	.	.	371	8	173	0	G|0.998;A|0.002	227
TNIK	23043	bcgsc.ca	37	3	170824990	170824990	+	Silent	SNP	G	G	A	rs904617	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNIK	NM_015028	exon21	c.C2388T	p.Y796Y	.	.	237	8	121	0	G|0.925;A|0.075	550
TNIK	23043	bcgsc.ca	37	3	170946002	170946002	+	Silent	SNP	A	A	G	rs17217552	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNIK	NM_001161562	exon3	c.T132C	p.H44H	.	.	146	8	40	0	A|0.884;G|0.116	550
TNK2	10188	bcgsc.ca	37	3	195595054	195595054	+	Silent	SNP	C	C	T	rs7516	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNK2	NM_001010938	exon13	c.G2304A	p.P768P	.	.	134	7	46	0	C|0.920;T|0.080	957
TNMD	64102	ucsc.edu;bcgsc.ca	37	X	99849017	99849017	+	Silent	SNP	G	G	A	rs2073162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNMD	NM_022144	exon3	c.G306A	p.V102V	.	.	281	30	172	2	0|0.015;A|0.433	130
TNN	63923	bcgsc.ca	37	1	175046826	175046826	+	Missense_Mutation	SNP	G	G	A	rs41266078	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNN	NM_022093	exon2	c.G272A	p.R91H	.	.	161	8	76	1	G|0.963;A|0.037	138
TNN	63923	bcgsc.ca	37	1	175087729	175087729	+	Missense_Mutation	SNP	T	T	C	rs6696455	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNN	NM_022093	exon11	c.T2419C	p.W807R	.	.	166	10	62	0	T|0.488;C|0.512	138
TNPO2	30000	bcgsc.ca	37	19	12813683	12813683	+	Silent	SNP	T	T	C	rs16978630	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNPO2	NM_013433	exon20	c.A2259G	p.E753E	.	.	515	17	199	0	T|0.866;C|0.134	227
TNPO2	30000	bcgsc.ca	37	19	12816559	12816559	+	Silent	SNP	G	G	T	rs7248726	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNPO2	NM_013433	exon15	c.C1692A	p.P564P	.	.	170	8	46	0	G|0.849;T|0.151	227
TNR	7143	bcgsc.ca	37	1	175335162	175335162	+	Silent	SNP	T	T	C	rs7516376	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNR	NM_003285	exon11	c.A2166G	p.P722P	.	.	286	11	142	0	T|0.929;C|0.071	324
TNR	7143	hgsc.bcm.edu;bcgsc.ca	37	1	175306758	175306758	+	Missense_Mutation	SNP	G	G	A	rs61731114	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNR	NM_003285	exon19	c.C3440T	p.T1147I	.	.	82	5	37	0	G|0.989;A|0.011	324
TNRC6C	57690	ucsc.edu;bcgsc.ca	37	17	76047249	76047249	+	Silent	SNP	G	G	A	rs34587560	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNRC6C	NM_018996	exon4	c.G2106A	p.K702K	.	.	60	6	30	0	G|0.976;A|0.024	24
TNS1	7145	bcgsc.ca	37	2	218674614	218674614	+	Silent	SNP	C	C	T	rs13417442	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNS1	NM_022648	exon30	c.G4893A	p.T1631T	.	.	291	12	100	0	C|0.935;T|0.065	156
TNS1	7145	ucsc.edu;bcgsc.ca	37	2	218745682	218745682	+	Silent	SNP	G	G	A	rs61745427	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNS1	NM_022648	exon16	c.C993T	p.D331D	.	.	59	7	26	0	G|0.990;A|0.010	156
TNXB	7148	bcgsc.ca	37	6	32025940	32025940	+	Missense_Mutation	SNP	T	T	C	rs187409250		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNXB	NM_019105	exon22	c.A7720G	p.K2574E	.	.	179	16	42	0	T|0.993;C|0.007	90
TNXB	7148	bcgsc.ca	37	6	32025949	32025949	+	Missense_Mutation	SNP	G	G	C	rs188116087		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNXB	NM_019105	exon22	c.C7711G	p.Q2571E	.	.	179	15	40	0	G|0.993;C|0.007	90
TNXB	7148	bcgsc.ca	37	6	32036363	32036363	+	Silent	SNP	T	T	C	rs61744966		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNXB	NM_019105	exon17	c.A6024G	p.T2008T	.	.	189	11	63	0	T|0.992;C|0.008	90
TNXB	7148	bcgsc.ca;mdanderson.org	37	6	32025956	32025956	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TNXB	NM_019105	exon22	c.T7704C	p.V2568V	.	.	184	17	42	0	.	90
TOMM34	10953	bcgsc.ca	37	20	43572217	43572217	+	Silent	SNP	T	T	C	rs1804644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOMM34	NM_006809	exon6	c.A702G	p.A234A	.	.	175	15	84	0	T|0.833;C|0.167	90
TOMM70A	9868	bcgsc.ca	37	3	100084432	100084432	+	Silent	SNP	G	G	A	rs277644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOMM70A	NM_014820	exon12	c.C1803T	p.Y601Y	.	.	447	19	184	0	G|0.834;A|0.166	91
TOP1P1	7151	ucsc.edu	37	1	171309078	171309078	+	RNA	SNP	C	C	G	rs12057885	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	75	7	75	1	C|0.578;G|0.422	.
TOP2A	7153	bcgsc.ca	37	17	38545824	38545824	+	Missense_Mutation	SNP	C	C	A	rs11540720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOP2A	NM_001067	exon35	c.G4543T	p.A1515S	.	.	111	9	54	0	C|0.957;A|0.043	655
TOP2A	7153	bcgsc.ca	37	17	38548586	38548586	+	Silent	SNP	T	T	G	rs34270904	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOP2A	NM_001067	exon31	c.A3972C	p.T1324T	.	.	580	14	226	0	T|0.966;G|0.034	655
TOP2A	7153	bcgsc.ca	37	17	38556533	38556533	+	Silent	SNP	T	T	C	rs34273139	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOP2A	NM_001067	exon23	c.A2928G	p.K976K	.	.	479	26	149	0	T|0.985;C|0.015	655
TOPAZ1	375337	bcgsc.ca	37	3	44283808	44283808	+	Missense_Mutation	SNP	C	C	A	rs7645375	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145030	exon1	c.C263A	p.P88Q	.	.	103	8	76	0	C|0.152;A|0.848	.
TOPAZ1	375337	bcgsc.ca	37	3	44284584	44284584	+	Missense_Mutation	SNP	G	G	A	rs9284879	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145030	exon2	c.G586A	p.V196I	.	.	170	6	81	0	G|0.463;A|0.537	.
TOPBP1	11073	hgsc.bcm.edu;bcgsc.ca	37	3	133372234	133372234	+	Missense_Mutation	SNP	T	T	C	rs199655255		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOPBP1	NM_007027	exon7	c.A877G	p.M293V	.	.	574	30	159	0	.	540
TOX3	27324	bcgsc.ca	37	16	52473263	52473263	+	Silent	SNP	A	A	G	rs9925256	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TOX3	NM_001080430	exon7	c.T1605C	p.P535P	.	.	112	15	58	0	A|0.542;G|0.458	68
TP53BP1	7158	bcgsc.ca	37	15	43748304	43748304	+	Silent	SNP	A	A	G	rs690367	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53BP1	NM_001141980	exon12	c.T2502C	p.D834D	.	.	200	17	64	0	A|0.491;G|0.509	294
TP53BP1	7158	bcgsc.ca	37	15	43762196	43762196	+	Missense_Mutation	SNP	C	C	T	rs689647	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53BP1	NM_001141980	exon11	c.G1249A	p.G417S	.	.	179	13	85	0	C|0.671;N|0.000	294
TP53BP1	7158	ucsc.edu;bcgsc.ca	37	15	43724646	43724646	+	Missense_Mutation	SNP	T	T	G	rs2602141	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53BP1	NM_001141980	exon17	c.A3421C	p.K1141Q	.	.	232	22	110	0	G|0.508;N|0.000	294
TP53BP2	7159	bcgsc.ca	37	1	223980207	223980207	+	Silent	SNP	G	G	C	rs1153936	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53BP2	NM_001031685	exon15	c.C2880G	p.L960L	.	.	148	6	50	0	G|0.824;C|0.176	229
TP53BP2	7159	ucsc.edu;bcgsc.ca	37	1	223976870	223976870	+	Silent	SNP	T	T	C	rs61758080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53BP2	NM_001031685	exon16	c.A3003G	p.P1001P	.	.	77	9	32	0	T|0.992;C|0.008	229
TP53I3	9540	bcgsc.ca	37	2	24305993	24305993	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53I3	NM_147184	exon3	c.A168G	p.G56G	.	.	198	6	47	0	.	226
TP53RK	112858	bcgsc.ca	37	20	45315750	45315750	+	Missense_Mutation	SNP	G	G	A	rs61729174	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TP53RK	NM_033550	exon2	c.C404T	p.T135I	.	.	221	9	55	0	G|0.993;A|0.007	333
TPCN1	53373	bcgsc.ca	37	12	113705650	113705650	+	Silent	SNP	C	C	T	rs147093889	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPCN1	NM_001143819	exon6	c.C633T	p.V211V	.	.	160	6	55	0	C|0.995;T|0.005	93
TPM4	7171	bcgsc.ca	37	19	16197320	16197320	+	Silent	SNP	T	T	C	rs78297427	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPM4	NM_001145160	exon4	c.T462C	p.I154I	.	.	206	10	92	0	.	316
TPP1	1200	bcgsc.ca	37	11	6638907	6638907	+	Silent	SNP	C	C	T	rs145853102		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPP1	NM_000391	exon4	c.G330A	p.K110K	.	.	151	11	56	0	C|0.999;T|0.001	90
TPP2	7174	bcgsc.ca	37	13	103328660	103328660	+	Silent	SNP	A	A	G	rs2230856	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPP2	NM_003291	exon28	c.A3555G	p.A1185A	.	.	451	16	225	0	A|0.897;G|0.103;T|0.000	92
TPPP	11076	bcgsc.ca	37	5	678005	678005	+	Silent	SNP	G	G	A	rs7737292	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPPP	NM_007030	exon2	c.C171T	p.R57R	.	.	151	13	72	0	G|0.965;A|0.035	90
TPPP	11076	ucsc.edu;bcgsc.ca	37	5	678079	678079	+	Silent	SNP	G	G	A	rs7737452	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPPP	NM_007030	exon2	c.C97T	p.L33L	.	.	257	24	82	0	G|0.953;A|0.047	90
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	1	186344137	186344137	+	Silent	SNP	G	G	A	rs75545265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPR	NM_003292	exon1	c.C24T	p.V8V	.	.	153	8	59	0	G|0.957;A|0.043	228
TPRX1	284355	bcgsc.ca	37	19	48305554	48305554	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPRX1	NM_198479	exon2	c.G714A	p.P238P	.	.	47	11	19	0	.	90
TPRX1	284355	ucsc.edu	37	19	48305550	48305550	+	Missense_Mutation	SNP	G	G	A	rs75909117		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPRX1	NM_198479	exon2	c.C718T	p.P240S	.	.	51	13	20	1	G|0.971;A|0.029	90
TPSD1	23430	bcgsc.ca	37	16	1306642	1306642	+	Missense_Mutation	SNP	C	C	T	rs61739908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPSD1	NM_012217	exon2	c.C208T	p.L70F	.	.	149	11	56	0	C|0.872;T|0.128	90
TPTE2	93492	bcgsc.ca	37	13	20025309	20025309	+	Silent	SNP	T	T	G	rs4529973	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TPTE2	NM_199254	exon12	c.A798C	p.L266L	.	.	131	7	61	0	T|0.985;G|0.015	92
TRABD	80305	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	50636268	50636268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRABD	NM_025204	exon8	c.C688A	p.R230S	.	.	59	24	19	0	.	90
TRAF3IP1	26146	bcgsc.ca	37	2	239237751	239237751	+	Missense_Mutation	SNP	A	A	G	rs3769110	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAF3IP1	NM_015650	exon5	c.A683G	p.N228S	.	.	228	9	184	2	A|0.850;G|0.150	228
TRAF3IP1	26146	bcgsc.ca	37	2	239253224	239253224	+	Missense_Mutation	SNP	A	A	T	rs58277463	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAF3IP1	NM_015650	exon9	c.A1246T	p.T416S	.	.	132	7	38	0	A|0.882;T|0.118	228
TRAF3IP3	80342	bcgsc.ca	37	1	209936914	209936914	+	Silent	SNP	C	C	T	rs17015169	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAF3IP3	NM_025228	exon8	c.C684T	p.A228A	.	.	145	12	69	1	C|0.643;T|0.357	291
TRAF3IP3	80342	hgsc.bcm.edu;bcgsc.ca	37	1	209933659	209933659	+	Missense_Mutation	SNP	G	G	A	rs78296889	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAF3IP3	NM_025228	exon3	c.G275A	p.R92Q	.	.	174	11	65	0	G|0.984;A|0.016	291
TRAF3IP3	80342	ucsc.edu;bcgsc.ca	37	1	209933540	209933540	+	Silent	SNP	A	A	G	rs2076150	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAF3IP3	NM_025228	exon3	c.A156G	p.Q52Q	.	.	119	15	45	0	A|0.652;C|0.000;G|0.348	291
TRANK1	9881	bcgsc.ca	37	3	36872587	36872587	+	Silent	SNP	C	C	T	rs17035654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRANK1	NM_014831	exon21	c.G8355A	p.R2785R	.	.	335	13	115	0	C|0.911;T|0.089	24
TRAPPC10	7109	bcgsc.ca	37	21	45502844	45502844	+	Missense_Mutation	SNP	T	T	G	rs915877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAPPC10	NM_003274	exon14	c.T1899G	p.I633M	.	.	158	8	50	0	T|0.954;G|0.046	92
TRAPPC10	7109	bcgsc.ca	37	21	45506819	45506819	+	Silent	SNP	T	T	C	rs1131999	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAPPC10	NM_003274	exon16	c.T2517C	p.A839A	.	.	88	6	32	0	T|0.658;C|0.342	92
TRAPPC10	7109	ucsc.edu	37	21	45503121	45503121	+	Missense_Mutation	SNP	G	G	A	rs2071152	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRAPPC10	NM_003274	exon14	c.G2176A	p.V726M	.	.	73	7	15	0	G|0.661;A|0.339	92
TRDMT1	1787	bcgsc.ca	37	10	17204187	17204187	+	Missense_Mutation	SNP	G	G	A	rs11254413	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRDMT1	NM_004412	exon4	c.C301T	p.H101Y	.	.	186	12	89	0	G|0.579;A|0.421	227
TRDMT1	1787	bcgsc.ca	37	10	17216556	17216556	+	Silent	SNP	C	C	T	rs2273734	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRDMT1	NM_004412	exon2	c.G168A	p.T56T	.	.	126	11	39	0	C|0.581;T|0.419	227
TRDN	10345	bcgsc.ca	37	6	123658776	123658776	+	Missense_Mutation	SNP	G	G	T	rs6569336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRDN	NM_006073	exon22	c.C1408A	p.L470M	.	.	122	5	49	0	G|0.885;T|0.115	91
TRDN	10345	bcgsc.ca	37	6	123696766	123696766	+	Missense_Mutation	SNP	G	G	T	rs17737379	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRDN	NM_001251987	exon19	c.C1260A	p.D420E	.	.	225	8	92	0	G|0.834;N|0.000	91
TRDN	10345	bcgsc.ca	37	6	123869716	123869716	+	Missense_Mutation	SNP	C	C	T	rs34808221		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRDN	NM_001256022	exon3	c.G274A	p.V92I	.	.	108	6	34	0	C|0.986;T|0.014	91
TREM1	54210	bcgsc.ca	37	6	41250466	41250466	+	Missense_Mutation	SNP	T	T	A	rs2234237	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TREM1	NM_001242590	exon2	c.A73T	p.T25S	.	.	297	13	104	0	T|0.723;N|0.000	577
TRERF1	55809	bcgsc.ca	37	6	42232475	42232475	+	Silent	SNP	G	G	A	rs2295274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRERF1	NM_033502	exon7	c.C1602T	p.H534H	.	.	93	7	34	0	G|0.848;A|0.152	230
TRERF1	55809	bcgsc.ca	37	6	42233529	42233529	+	Silent	SNP	G	G	A	rs79466811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRERF1	NM_033502	exon6	c.C1444T	p.L482L	.	.	138	7	41	0	G|0.981;A|0.019	230
TRERF1	55809	bcgsc.ca	37	6	42236429	42236429	+	Silent	SNP	T	T	C	rs62640383	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRERF1	NM_033502	exon5	c.A900G	p.P300P	.	.	465	12	212	1	T|0.977;C|0.023	230
TRERF1	55809	bcgsc.ca	37	6	42237070	42237070	+	Missense_Mutation	SNP	T	T	C	rs116259507	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRERF1	NM_033502	exon5	c.A259G	p.S87G	.	.	117	5	32	0	T|0.981;C|0.019	230
TRHDE	29953	bcgsc.ca	37	12	73014917	73014917	+	Silent	SNP	A	A	G	rs7139238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRHDE	NM_013381	exon14	c.A2364G	p.T788T	.	.	151	5	67	0	A|0.784;G|0.216	93
TRIM10	10107	bcgsc.ca	37	6	30128442	30128442	+	Missense_Mutation	SNP	C	C	T	rs12212092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM10	NM_052828	exon1	c.G194A	p.R65H	.	.	193	10	53	0	C|0.895;T|0.105	226
TRIM14	9830	bcgsc.ca	37	9	100857175	100857175	+	Missense_Mutation	SNP	G	G	A	rs114314984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM14	NM_033219	exon4	c.C674T	p.T225M	.	.	100	5	46	0	G|0.983;A|0.017	226
TRIM23	373	bcgsc.ca	37	5	64892939	64892939	+	Silent	SNP	T	T	G	rs33945461	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM23	NM_033228	exon8	c.A1248C	p.G416G	.	.	163	7	125	0	T|0.950;G|0.050	230
TRIM28	10155	hgsc.bcm.edu;bcgsc.ca	37	19	59059082	59059082	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM28	NM_005762	exon5	c.839+2T>A	.	.	.	171	8	35	0	.	870
TRIM31	11074	bcgsc.ca	37	6	30075864	30075864	+	Silent	SNP	A	A	G	rs2023472	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM31	NM_007028	exon6	c.T849C	p.H283H	.	.	383	18	160	0	G|0.652;A|0.348	658
TRIM31	11074	bcgsc.ca	37	6	30075903	30075903	+	Silent	SNP	C	C	T	rs28400887	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM31	NM_007028	exon6	c.G810A	p.L270L	.	.	359	11	159	0	C|0.759;T|0.241	658
TRIM34	53840	hgsc.bcm.edu	37	11	5662437	5662437	+	Missense_Mutation	SNP	G	G	C	rs74051049	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM34	NM_130390	exon4	c.G791C	p.R264T	.	.	381	18	194	0	G|0.970;C|0.030	227
TRIM36	55521	bcgsc.ca	37	5	114482847	114482847	+	Silent	SNP	T	T	C	rs12109197	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM36	NM_018700	exon3	c.A543G	p.E181E	.	.	615	20	286	0	T|0.998;C|0.002	725
TRIM41	90933	bcgsc.ca	37	5	180651172	180651172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM41	NM_201627	exon1	c.A173G	p.E58G	.	.	67	5	32	0	.	226
TRIM48	79097	bcgsc.ca	37	11	55029787	55029787	+	Missense_Mutation	SNP	G	G	A	rs12799381	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM48	NM_024114	exon1	c.G44A	p.R15Q	.	.	196	15	102	1	G|0.891;A|0.109	130
TRIM4	89122	bcgsc.ca	37	7	99500911	99500911	+	Silent	SNP	A	A	G	rs2247761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM4	NM_033017	exon6	c.T849C	p.S283S	.	.	156	8	60	1	A|0.383;G|0.617	227
TRIM49C	642612	bcgsc.ca	37	11	89774236	89774236	+	Missense_Mutation	SNP	C	C	G	rs74584169	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001195234	exon8	c.C877G	p.H293D	.	.	182	18	63	0	C|0.658;G|0.342	.
TRIM5	85363	bcgsc.ca	37	11	5688940	5688940	+	Missense_Mutation	SNP	C	C	T	rs11038628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM5	NM_033092	exon5	c.G746A	p.G249D	.	.	111	8	49	0	C|0.821;T|0.179	227
TRIM64B	642446	bcgsc.ca	37	11	89604109	89604109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001164397	exon6	c.G1030A	p.V344M	.	.	915	228	400	1	.	.
TRIM64C	646754	bcgsc.ca	37	11	49075680	49075680	+	Missense_Mutation	SNP	A	A	T	rs73471244	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM64C	NM_001206631	exon6	c.T939A	p.D313E	.	.	660	23	274	0	A|0.967;T|0.033	68
TRIM64C	646754	bcgsc.ca	37	11	49080536	49080536	+	Silent	SNP	T	T	G	rs7947781	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM64C	NM_001206631	exon1	c.A129C	p.S43S	.	.	315	15	124	0	T|0.967;G|0.033	68
TRIM66	9866	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	8662139	8662139	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM66	NM_014818	exon9	c.C1348G	p.Q450E	.	.	95	34	57	0	.	68
TRIM6-TRIM34	445372	bcgsc.ca	37	11	5629607	5629607	+	Silent	SNP	G	G	A	rs10769121	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM6-TRIM34	NM_001003819	exon5	c.G840A	p.V280V	.	.	219	14	132	0	G|0.632;A|0.368	45
TRIM6-TRIM34	445372	bcgsc.ca	37	11	5664684	5664684	+	Missense_Mutation	SNP	T	T	G	rs16933844	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIM6-TRIM34	NM_001003819	exon14	c.T2274G	p.N758K	.	.	367	15	167	0	T|0.938;G|0.062	45
TRIO	7204	bcgsc.ca	37	5	14389469	14389469	+	Silent	SNP	C	C	T	rs7715916	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIO	NM_007118	exon25	c.C4020T	p.I1340I	.	.	112	8	44	0	C|0.891;T|0.109	562
TRIO	7204	bcgsc.ca	37	5	14397238	14397238	+	Silent	SNP	T	T	C	rs30774	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIO	NM_007118	exon29	c.T4398C	p.D1466D	.	.	155	13	70	0	T|0.590;C|0.410	562
TRIOBP	11078	bcgsc.ca	37	22	38121152	38121152	+	Missense_Mutation	SNP	C	C	A	rs9610841	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIOBP	NM_001039141	exon7	c.C2589A	p.N863K	.	.	228	18	88	0	C|0.623;A|0.377	136
TRIOBP	11078	bcgsc.ca	37	22	38129332	38129332	+	Silent	SNP	G	G	A	rs7284476	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIOBP	NM_001039141	exon8	c.G3975A	p.Q1325Q	.	.	104	6	54	0	G|0.639;A|0.361	136
TRIOBP	11078	bcgsc.ca	37	22	38151170	38151170	+	Silent	SNP	G	G	A	rs11704996	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIOBP	NM_001039141	exon14	c.G5550A	p.V1850V	.	.	127	8	34	0	G|0.950;A|0.050	136
TRIP4	9325	bcgsc.ca	37	15	64706312	64706312	+	Missense_Mutation	SNP	A	A	G	rs74019250	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRIP4	NM_016213	exon8	c.A1072G	p.N358D	.	.	180	7	53	0	A|0.998;G|0.002	188
TRMT13	54482	bcgsc.ca	37	1	100609686	100609686	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019083	exon9	c.T804C	p.C268C	.	.	106	7	75	0	.	.
TRMT2A	27037	hgsc.bcm.edu;bcgsc.ca	37	22	20100181	20100181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRMT2A	NM_022727	exon12	c.A1783T	p.T595S	.	.	539	22	150	0	.	153
TRMT44	152992	bcgsc.ca	37	4	8467157	8467157	+	Missense_Mutation	SNP	A	A	G	rs34873641	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_152544	exon8	c.A1363G	p.I455V	.	.	740	22	250	0	A|0.975;G|0.025	.
TRMT5	57570	bcgsc.ca	37	14	61442412	61442412	+	Missense_Mutation	SNP	T	T	G	rs78987129	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRMT5	NM_020810	exon4	c.A1225C	p.S409R	.	.	270	13	112	0	T|0.997;G|0.003	91
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72948639	72948639	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPA1	NM_007332	exon21	c.G2439T	p.T813T	.	.	560	76	117	0	.	230
TRPC1	7220	bcgsc.ca	37	3	142503605	142503605	+	Silent	SNP	G	G	A	rs7621642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPC1	NM_001251845	exon7	c.G1020A	p.S340S	.	.	258	23	104	0	G|0.616;A|0.384	92
TRPC1	7220	bcgsc.ca	37	3	142524858	142524858	+	Silent	SNP	G	G	A	rs1132030	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPC1	NM_001251845	exon13	c.G2163A	p.R721R	.	.	213	16	127	0	A|0.353;G|0.647;T|0.000	92
TRPC4AP	26133	bcgsc.ca	37	20	33657126	33657126	+	Silent	SNP	G	G	A	rs1998233	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPC4AP	NM_199368	exon3	c.C387T	p.Y129Y	.	.	582	38	263	0	G|0.223;A|0.777	91
TRPC6	7225	bcgsc.ca	37	11	101325788	101325788	+	Silent	SNP	G	G	A	rs72984209	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPC6	NM_004621	exon11	c.C2529T	p.F843F	.	.	428	26	260	0	G|0.853;A|0.147	93
TRPC6	7225	bcgsc.ca	37	11	101342958	101342958	+	Silent	SNP	G	G	A	rs61743044	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPC6	NM_004621	exon8	c.C2115T	p.Y705Y	.	.	100	6	44	0	G|0.956;A|0.044	93
TRPM1	4308	bcgsc.ca	37	15	31362279	31362279	+	Silent	SNP	A	A	G	rs74010762		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM1	NM_001252020	exon3	c.T285C	p.Y95Y	.	.	302	9	73	0	A|0.984;G|0.016	94
TRPM1	4308	bcgsc.ca	37	15	31369123	31369123	+	Missense_Mutation	SNP	A	A	G	rs4779816	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM1	NM_001252020	exon2	c.T119C	p.M40T	.	.	152	7	93	0	A|0.119;G|0.881	94
TRPM3	80036	bcgsc.ca	37	9	73240431	73240431	+	Silent	SNP	T	T	G	rs73451725	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM3	NM_206945	exon13	c.A1176C	p.R392R	.	.	247	10	164	0	T|0.873;G|0.127	521
TRPM6	140803	bcgsc.ca	37	9	77376647	77376647	+	Missense_Mutation	SNP	T	T	C	rs2274924	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM6	NM_017662	exon27	c.A4750G	p.K1584E	.	.	378	19	191	0	T|0.756;C|0.244	335
TRPM6	140803	bcgsc.ca	37	9	77377410	77377410	+	Missense_Mutation	SNP	C	C	T	rs3750425	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM6	NM_017662	exon26	c.G4177A	p.V1393I	.	.	142	8	45	0	C|0.855;T|0.145	335
TRPM8	79054	bcgsc.ca	37	2	234863788	234863788	+	Missense_Mutation	SNP	G	G	A	rs7593557	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM8	NM_024080	exon11	c.G1256A	p.S419N	.	.	156	13	61	0	G|0.732;A|0.268	94
TRPM8	79054	bcgsc.ca	37	2	234915540	234915540	+	Silent	SNP	C	C	G	rs11563071	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPM8	NM_024080	exon23	c.C3174G	p.V1058V	.	.	157	8	56	0	C|0.880;G|0.120	94
TRPV3	162514	bcgsc.ca	37	17	3422077	3422077	+	Silent	SNP	G	G	A	rs12946883	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV3	NM_001258205	exon15	c.C1878T	p.S626S	.	.	167	13	66	0	G|0.699;A|0.301	94
TRPV3	162514	bcgsc.ca	37	17	3445901	3445901	+	Silent	SNP	T	T	G	rs11078458	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV3	NM_001258205	exon6	c.A558C	p.I186I	.	.	289	9	106	0	T|0.460;G|0.540	94
TRPV3	162514	bcgsc.ca	37	17	3446840	3446840	+	Missense_Mutation	SNP	C	C	T	rs8066242	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV3	NM_001258205	exon5	c.G394A	p.V132M	.	.	147	6	58	0	C|0.926;T|0.074	94
TRPV4	59341	bcgsc.ca	37	12	110240838	110240838	+	Silent	SNP	T	T	G	rs3825394	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV4	NM_001177433	exon3	c.A670C	p.R224R	.	.	120	8	36	0	T|0.359;G|0.641	94
TRPV5	56302	bcgsc.ca	37	7	142625249	142625249	+	Silent	SNP	T	T	C	rs4252418	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV5	NM_019841	exon7	c.A843G	p.T281T	.	.	176	10	61	0	T|0.755;C|0.245	177
TRPV5	56302	bcgsc.ca	37	7	142625882	142625882	+	Silent	SNP	G	G	A	rs4252412	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV5	NM_019841	exon6	c.C666T	p.Y222Y	.	.	369	20	141	1	G|0.792;A|0.208	177
TRPV5	56302	bcgsc.ca	37	7	142625933	142625933	+	Silent	SNP	G	G	A	rs4252411	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV5	NM_019841	exon6	c.C615T	p.L205L	.	.	395	10	154	0	G|0.861;A|0.139	177
TRPV5	56302	ucsc.edu;bcgsc.ca	37	7	142622714	142622714	+	Silent	SNP	G	G	A	rs4252435	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV5	NM_019841	exon8	c.C1032T	p.T344T	.	.	182	18	90	0	G|0.782;A|0.218	177
TRPV6	55503	bcgsc.ca	37	7	142569596	142569596	+	Missense_Mutation	SNP	A	A	G	rs4987682	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV6	NM_018646	exon15	c.T2042C	p.M681T	.	.	151	12	38	0	A|0.785;G|0.215	92
TRPV6	55503	ucsc.edu	37	7	142570142	142570142	+	Silent	SNP	T	T	C	rs4987679	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV6	NM_018646	exon14	c.A1878G	p.G626G	.	.	58	9	17	0	T|0.785;C|0.215	92
TRPV6	55503	ucsc.edu	37	7	142574913	142574913	+	Missense_Mutation	SNP	A	A	G	rs4987657	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV6	NM_018646	exon4	c.T469C	p.C157R	.	.	104	15	24	0	A|0.797;G|0.203	92
TRPV6	55503	ucsc.edu;bcgsc.ca	37	7	142572908	142572908	+	Missense_Mutation	SNP	T	T	C	rs4987667	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRPV6	NM_018646	exon9	c.A1132G	p.M378V	.	.	97	10	28	0	T|0.791;C|0.209	92
TRRAP	8295	hgsc.bcm.edu;bcgsc.ca	37	7	98545948	98545948	+	Silent	SNP	G	G	T	rs35426979	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TRRAP	NM_001244580	exon33	c.G4632T	p.R1544R	.	.	120	6	48	0	G|0.992;T|0.008	923
TSC1	7248	bcgsc.ca	37	9	135786904	135786904	+	Missense_Mutation	SNP	A	A	G	rs1073123	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSC1	NM_000368	exon10	c.T965C	p.M322T	.	.	148	7	62	0	A|0.859;C|0.001	1906
TSC2	7249	bcgsc.ca	37	16	2120487	2120487	+	Missense_Mutation	SNP	G	G	A	rs1800729	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSC2	NM_001114382	exon17	c.G1747A	p.A583T	.	.	213	8	47	0	G|0.997;A|0.003	1908
TSEN54	283989	bcgsc.ca	37	17	73513289	73513289	+	Silent	SNP	C	C	G	rs6501818	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSEN54	NM_207346	exon4	c.C333G	p.R111R	.	.	161	6	45	0	C|0.822;G|0.178	91
TSG101	7251	bcgsc.ca	37	11	18503306	18503306	+	Silent	SNP	G	G	A	rs8018	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSG101	NM_006292	exon9	c.C954T	p.I318I	.	.	271	7	105	0	G|0.973;A|0.027	90
TSKS	60385	bcgsc.ca	37	19	50248501	50248501	+	Missense_Mutation	SNP	T	T	C	rs2304202	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSKS	NM_021733	exon7	c.A1145G	p.D382G	.	.	102	16	39	0	T|0.894;C|0.106	154
TSNAX-DISC1	0	mdanderson.org	37	1	232099113	232099113	+	RNA	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	81	24	22	0	.	.
TSPAN10	83882	bcgsc.ca	37	17	79612443	79612443	+	Silent	SNP	T	T	C	rs7210193	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPAN10	.	.	.	.	.	.	56	4	29	0	T|0.396;C|0.604	23
TSPAN16	26526	bcgsc.ca	37	19	11408905	11408905	+	Missense_Mutation	SNP	T	T	G	rs34162761	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPAN16	NM_012466	exon2	c.T157G	p.Y53D	.	.	218	16	74	0	T|0.952;G|0.048	91
TSPAN17	26262	bcgsc.ca	37	5	176078805	176078805	+	Silent	SNP	C	C	T	rs35207938	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPAN17	NM_001006616	exon3	c.C189T	p.P63P	.	.	255	8	56	0	C|0.992;T|0.008	226
TSPAN18	90139	bcgsc.ca	37	11	44940828	44940828	+	Missense_Mutation	SNP	G	G	A	rs2291334	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPAN18	NM_130783	exon6	c.G397A	p.V133I	.	.	122	7	61	0	G|0.710;A|0.290	68
TSPAN3	10099	bcgsc.ca	37	15	77344793	77344793	+	Silent	SNP	T	T	A	rs11737	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPAN3	NM_005724	exon6	c.A603T	p.V201V	.	.	206	10	47	0	T|0.446;A|0.554	90
TSPAN7	7102	bcgsc.ca	37	X	38525530	38525530	+	Silent	SNP	T	T	C	rs7049247	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPAN7	NM_004615	exon2	c.T237C	p.A79A	.	.	208	7	72	0	0|0.003;C|0.063	63
TSPEAR	54084	bcgsc.ca	37	21	46131379	46131379	+	Silent	SNP	G	G	A	rs75351275	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSPEAR	NM_144991	exon1	c.C51T	p.G17G	.	.	375	13	113	0	G|0.993;A|0.007	244
TSR1	55720	hgsc.bcm.edu	37	17	2233869	2233869	+	Silent	SNP	G	G	A	rs111973646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSR1	NM_018128	exon10	c.C1710T	p.V570V	.	.	185	11	79	0	G|0.988;A|0.012	91
TSSC4	10078	bcgsc.ca	37	11	2424541	2424541	+	Missense_Mutation	SNP	C	C	G	rs2234279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSSC4	NM_005706	exon2	c.C678G	p.H226Q	.	.	120	8	41	0	C|0.883;G|0.117	90
TSSK2	23617	ucsc.edu	37	22	19119545	19119545	+	Silent	SNP	C	C	T	rs45604134	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSSK2	NM_053006	exon1	c.C633T	p.C211C	.	.	113	15	26	0	C|0.846;T|0.154	333
TSTD2	158427	bcgsc.ca	37	9	100388119	100388119	+	Missense_Mutation	SNP	G	G	T	rs10817858	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TSTD2	NM_139246	exon3	c.C326A	p.A109D	.	.	220	6	85	0	G|0.832;T|0.168	92
TTBK2	146057	bcgsc.ca	37	15	43038059	43038059	+	Silent	SNP	G	G	A	rs74398902		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTBK2	NM_173500	exon15	c.C3669T	p.H1223H	.	.	510	14	203	0	G|0.987;A|0.013	338
TTBK2	146057	bcgsc.ca	37	15	43170793	43170793	+	Missense_Mutation	SNP	A	A	G	rs6493068	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTBK2	NM_173500	exon2	c.T23C	p.L8P	.	.	187	14	46	0	A|0.525;G|0.475	338
TTC18	118491	bcgsc.ca	37	10	75035257	75035257	+	Missense_Mutation	SNP	T	T	C	rs4294502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC18	NM_145170	exon23	c.A2830G	p.N944D	.	.	170	9	55	0	T|0.811;C|0.189	92
TTC18	118491	bcgsc.ca	37	10	75095253	75095253	+	Silent	SNP	G	G	A	rs7910541	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC18	NM_145170	exon8	c.C822T	p.C274C	.	.	222	7	81	0	G|0.871;A|0.129	92
TTC21A	199223	bcgsc.ca	37	3	39152345	39152345	+	Missense_Mutation	SNP	G	G	A	rs1112438	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC21A	NM_001105513	exon4	c.G272A	p.R91Q	.	.	156	5	47	0	G|0.661;A|0.339	91
TTC21A	199223	bcgsc.ca	37	3	39161456	39161456	+	Missense_Mutation	SNP	G	G	A	rs1274972	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC21A	NM_145755	exon8	c.G869A	p.R290K	.	.	299	19	122	0	G|0.554;A|0.446	91
TTC21A	199223	bcgsc.ca	37	3	39161464	39161464	+	Missense_Mutation	SNP	G	G	A	rs1274971	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC21A	NM_145755	exon8	c.G877A	p.E293K	.	.	274	17	120	2	G|0.552;A|0.448	91
TTC21B	79809	bcgsc.ca	37	2	166788324	166788324	+	Missense_Mutation	SNP	T	T	C	rs112868646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC21B	NM_024753	exon8	c.A838G	p.M280V	.	.	136	6	49	0	T|0.985;C|0.015	94
TTC21B	79809	bcgsc.ca	37	2	166797582	166797582	+	Missense_Mutation	SNP	T	T	A	rs80026831	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC21B	NM_024753	exon6	c.A665T	p.Q222L	.	.	182	8	72	0	T|0.985;A|0.015	94
TTC23L	153657	bcgsc.ca	37	5	34840841	34840841	+	Missense_Mutation	SNP	A	A	G	rs6451173	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC23L	NM_144725	exon2	c.A65G	p.H22R	.	.	204	15	64	0	A|0.456;G|0.544	22
TTC3	7267	bcgsc.ca	37	21	38563725	38563725	+	Silent	SNP	G	G	A	rs2835655	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC3	NM_001001894	exon40	c.G5115A	p.K1705K	.	.	394	21	152	0	G|0.654;A|0.346	590
TTC37	9652	bcgsc.ca	37	5	94826655	94826655	+	Missense_Mutation	SNP	C	C	A	rs2303650	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC37	NM_014639	exon37	c.G3888T	p.R1296S	.	.	496	18	174	2	C|0.776;A|0.224	94
TTC37	9652	hgsc.bcm.edu;bcgsc.ca	37	5	94820541	94820541	+	Missense_Mutation	SNP	C	C	T	rs74664147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC37	NM_014639	exon38	c.G3940A	p.E1314K	.	.	200	9	86	0	C|0.998;T|0.002	94
TTC39B	158219	bcgsc.ca	37	9	15187010	15187010	+	Silent	SNP	T	T	C	rs112186053	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC39B	NM_152574	exon15	c.A1419G	p.A473A	.	.	111	7	61	0	T|0.993;C|0.007	187
TTC40	54777	bcgsc.ca	37	10	134736076	134736076	+	Missense_Mutation	SNP	T	T	G	rs4880288	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001200049	exon12	c.A1393C	p.I465L	.	.	95	7	28	0	T|0.485;G|0.515	.
TTC40	54777	bcgsc.ca	37	10	134738232	134738232	+	Silent	SNP	A	A	G	rs4075501	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001200049	exon11	c.T1224C	p.A408A	.	.	114	12	40	0	A|0.499;G|0.501	.
TTC40	54777	ucsc.edu;bcgsc.ca	37	10	134735672	134735672	+	Silent	SNP	A	A	G	rs7915371	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001200049	exon13	c.T1542C	p.N514N	.	.	237	24	64	0	A|0.515;G|0.485	.
TTC7A	57217	bcgsc.ca	37	2	47301029	47301029	+	Silent	SNP	A	A	G	rs3739099	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC7A	NM_020458	exon20	c.A2544G	p.V848V	.	.	201	9	93	0	A|0.774;G|0.226	136
TTC7B	145567	bcgsc.ca	37	14	91161862	91161862	+	Silent	SNP	C	C	T	rs10146731	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTC7B	NM_001010854	exon6	c.G759A	p.T253T	.	.	233	8	81	0	C|0.384;T|0.616	92
TTF1	7270	bcgsc.ca	37	9	135277096	135277096	+	Silent	SNP	T	T	C	rs141270032	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTF1	NM_007344	exon2	c.A1113G	p.E371E	.	.	345	23	164	1	T|0.994;C|0.006	94
TTF1	7270	bcgsc.ca	37	9	135277269	135277269	+	Missense_Mutation	SNP	C	C	G	rs141751698	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTF1	NM_007344	exon2	c.G940C	p.V314L	.	.	116	8	53	0	C|0.994;G|0.006	94
TTI2	80185	ucsc.edu	37	8	33369944	33369944	+	Missense_Mutation	SNP	T	T	C	rs2304748	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001265581	exon2	c.A188G	p.E63G	.	.	117	17	78	1	C|0.548;N|0.000	.
TTLL10	254173	bcgsc.ca	37	1	1118275	1118275	+	Silent	SNP	C	C	T	rs61733845	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL10	NM_001130045	exon11	c.C936T	p.C312C	.	.	163	8	48	0	C|0.845;T|0.155	153
TTLL10	254173	bcgsc.ca	37	1	1120431	1120431	+	Missense_Mutation	SNP	G	G	A	rs1320571	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL10	NM_001130045	exon13	c.G1343A	p.S448N	.	.	135	6	31	0	G|0.839;A|0.161	153
TTLL13	440307	bcgsc.ca	37	15	90800408	90800408	+	Silent	SNP	C	C	G	rs2063742	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL13	NM_001029964	exon7	c.C744G	p.V248V	.	.	223	13	96	0	C|0.716;G|0.284	44
TTLL13	440307	bcgsc.ca	37	15	90800449	90800449	+	Missense_Mutation	SNP	C	C	T	rs2063743	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL13	NM_001029964	exon7	c.C785T	p.T262I	.	.	171	9	70	1	C|0.720;T|0.280	44
TTLL2	83887	bcgsc.ca	37	6	167754710	167754710	+	Missense_Mutation	SNP	A	A	C	rs41266331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL2	NM_031949	exon3	c.A1322C	p.K441T	.	.	140	5	78	0	A|0.857;C|0.143	92
TTLL4	9654	bcgsc.ca	37	2	219602819	219602819	+	Silent	SNP	G	G	A	rs3731876	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL4	NM_014640	exon3	c.G420A	p.P140P	.	.	52	5	28	0	G|0.459;A|0.541	93
TTLL4	9654	hgsc.bcm.edu;bcgsc.ca	37	2	219614067	219614067	+	Missense_Mutation	SNP	G	G	A	rs143759265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL4	NM_014640	exon14	c.G2692A	p.E898K	.	.	154	8	64	0	G|0.999;A|0.001	93
TTLL4	9654	ucsc.edu;bcgsc.ca	37	2	219610433	219610433	+	Silent	SNP	A	A	G	rs586194	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTLL4	NM_014640	exon7	c.A1806G	p.E602E	.	.	125	16	40	0	A|0.446;G|0.554	93
TTN	7273	bcgsc.ca	37	2	179571448	179571448	+	Missense_Mutation	SNP	A	A	G	rs4893852	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon102	c.T29153C	p.I9718T	.	.	188	9	134	0	A|0.910;G|0.090	636
TTN	7273	bcgsc.ca	37	2	179577870	179577870	+	Silent	SNP	T	T	C	rs61232800	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon93	c.A26991G	p.T8997T	.	.	350	16	127	0	T|0.981;C|0.019	636
TTN	7273	bcgsc.ca	37	2	179578730	179578730	+	Silent	SNP	G	G	A	rs2562839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon92	c.C26655T	p.S8885S	.	.	262	8	95	0	G|0.614;A|0.386	636
TTN	7273	bcgsc.ca	37	2	179579212	179579212	+	Silent	SNP	T	T	C	rs2562838	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon91	c.A26289G	p.E8763E	.	.	127	6	51	0	T|0.582;C|0.418	636
TTN	7273	bcgsc.ca	37	2	179579822	179579822	+	Silent	SNP	T	T	A	rs2562836	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon90	c.A26091T	p.L8697L	.	.	483	25	123	0	T|0.496;N|0.001	636
TTN	7273	bcgsc.ca	37	2	179586779	179586779	+	Silent	SNP	A	A	G	rs16866469	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon78	c.T22611C	p.H7537H	.	.	194	6	99	0	A|0.983;G|0.017	636
TTN	7273	bcgsc.ca	37	2	179600648	179600648	+	Missense_Mutation	SNP	C	C	T	rs2742347	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon50	c.G14525A	p.R4842K	.	.	384	17	106	0	C|0.858;T|0.142	636
TTN	7273	bcgsc.ca	37	2	179605843	179605843	+	Silent	SNP	G	G	A	rs55895721	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon48	c.C12117T	p.P4039P	.	.	126	6	41	0	G|0.981;A|0.019	636
TTN	7273	bcgsc.ca	37	2	179611680	179611680	+	Silent	SNP	G	G	A	rs72648911	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_133379	exon46	c.C15447T	p.Y5149Y	.	.	398	24	179	0	G|0.954;A|0.046	636
TTN	7273	bcgsc.ca	37	2	179611851	179611851	+	Silent	SNP	C	C	T	rs72648910	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_133379	exon46	c.G15276A	p.L5092L	.	.	454	27	97	0	C|0.965;T|0.035	636
TTN	7273	bcgsc.ca	37	2	179611875	179611875	+	Silent	SNP	A	A	G	rs61233923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_133379	exon46	c.T15252C	p.Y5084Y	.	.	472	25	98	0	A|0.963;G|0.037	636
TTN	7273	bcgsc.ca	37	2	179613147	179613147	+	Missense_Mutation	SNP	G	G	C	rs75785339	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_133379	exon46	c.C13980G	p.H4660Q	.	.	855	18	305	0	G|0.964;C|0.036	636
TTN	7273	bcgsc.ca	37	2	179621353	179621353	+	Missense_Mutation	SNP	G	G	A	rs57389274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon46	c.C10850T	p.S3617F	.	.	149	5	54	0	G|0.982;A|0.018	636
TTN	7273	bcgsc.ca	37	2	179641951	179641951	+	Missense_Mutation	SNP	G	G	A	rs73973147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon27	c.C4739T	p.T1580M	.	.	260	8	66	0	G|0.995;A|0.005	636
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179431170	179431170	+	Silent	SNP	G	G	T	rs10185798	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTN	NM_001267550	exon326	c.C79689A	p.V26563V	.	.	174	10	56	0	G|0.993;T|0.007	636
TTYH2	94015	bcgsc.ca	37	17	72246466	72246466	+	Silent	SNP	C	C	T	rs7224615	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TTYH2	NM_032646	exon10	c.C1086T	p.T362T	.	.	208	8	56	0	C|0.592;T|0.408	138
TUB	7275	bcgsc.ca	37	11	8060566	8060566	+	Missense_Mutation	SNP	G	G	A	rs55648406	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TUB	NM_003320	exon1	c.G146A	p.R49Q	.	.	71	6	27	0	G|0.993;A|0.007	91
TUBA1A	7846	bcgsc.ca	37	12	49579696	49579696	+	Silent	SNP	C	C	G	rs697624	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TUBA1A	NM_001270399	exon4	c.G453C	p.S151S	.	.	402	17	139	2	C|0.566;G|0.434	90
TUBA1A	7846	bcgsc.ca	37	12	49580180	49580180	+	Silent	SNP	T	T	C	rs1056875	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TUBA1A	NM_001270399	exon3	c.A288G	p.K96K	.	.	242	15	60	0	T|0.550;C|0.450	90
TUBA1B	10376	bcgsc.ca	37	12	49522605	49522605	+	Silent	SNP	C	C	T	rs1057548	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TUBA1B	NM_006082	exon4	c.G492A	p.K164K	.	.	423	19	159	1	C|0.576;T|0.424	90
TUBGCP5	114791	bcgsc.ca	37	15	22867588	22867588	+	Silent	SNP	G	G	A	rs61739977	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TUBGCP5	NM_052903	exon19	c.G2664A	p.V888V	.	.	185	6	85	0	G|0.997;A|0.003	91
TUBGCP6	85378	hgsc.bcm.edu	37	22	50656942	50656942	+	Silent	SNP	G	G	A	rs147939592	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TUBGCP6	NM_020461	exon22	c.C4929T	p.D1643D	.	.	127	6	25	0	G|0.997;A|0.003	93
TULP3	7289	bcgsc.ca	37	12	3046802	3046802	+	Silent	SNP	A	A	G	rs33973716	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TULP3	NM_003324	exon9	c.A930G	p.T310T	.	.	302	13	71	0	A|0.796;G|0.204	226
TULP3	7289	bcgsc.ca	37	12	3049698	3049698	+	Missense_Mutation	SNP	T	T	C	rs998814	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TULP3	NM_001160408	exon12	c.T1312C	p.C438R	.	.	141	8	47	0	A|0.008;C|0.256	226
TXLNB	167838	bcgsc.ca	37	6	139563968	139563968	+	Silent	SNP	A	A	G	rs61741440	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXLNB	NM_153235	exon10	c.T1750C	p.L584L	.	.	132	6	59	0	A|0.975;G|0.025	91
TXLNB	167838	bcgsc.ca	37	6	139563972	139563972	+	Silent	SNP	G	G	C	rs61741439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXLNB	NM_153235	exon10	c.C1746G	p.A582A	.	.	135	7	54	0	G|0.967;C|0.033	91
TXLNG	55787	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16859628	16859628	+	Silent	SNP	G	G	A	rs5924530	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXLNG	NM_018360	exon10	c.G1326A	p.Q442Q	.	.	194	23	101	0	0|0.012;A|0.602	130
TXNDC11	51061	bcgsc.ca	37	16	11773662	11773662	+	Missense_Mutation	SNP	C	C	G	rs3190321	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC11	NM_015914	exon12	c.G2266C	p.V756L	.	.	218	18	72	0	C|0.495;G|0.505	90
TXNDC11	51061	bcgsc.ca	37	16	11782221	11782221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC11	NM_015914	exon9	c.T1981C	p.S661P	.	.	85	4	45	0	.	90
TXNDC16	57544	bcgsc.ca	37	14	52985950	52985950	+	Missense_Mutation	SNP	T	T	A	rs28593180	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC16	NM_020784	exon7	c.A454T	p.N152Y	.	.	402	31	118	0	T|0.959;A|0.041	22
TXNDC16	57544	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52985997	52985997	+	Missense_Mutation	SNP	C	C	T	rs28759013	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC16	NM_020784	exon7	c.G407A	p.S136N	.	.	223	24	71	0	C|0.970;T|0.030	22
TXNDC2	84203	bcgsc.ca	37	18	9887149	9887149	+	Missense_Mutation	SNP	G	G	C	rs11662946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC2	NM_001098529	exon2	c.G673C	p.A225P	.	.	148	13	77	1	G|0.937;C|0.063	92
TXNDC2	84203	bcgsc.ca	37	18	9887463	9887463	+	Silent	SNP	C	C	T	rs111251988		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC2	NM_001098529	exon2	c.C987T	p.I329I	.	.	127	5	66	0	C|0.500;T|0.500	92
TXNDC2	84203	bcgsc.ca	37	18	9888027	9888027	+	Silent	SNP	C	C	T	rs11664080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TXNDC2	NM_001098529	exon2	c.C1551T	p.C517C	.	.	274	9	80	1	C|0.941;T|0.059	92
TYRO3	7301	hgsc.bcm.edu;bcgsc.ca	37	15	41870245	41870245	+	Missense_Mutation	SNP	C	C	T	rs1042057	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TYRO3	NM_006293	exon19	c.C2444T	p.A815V	.	.	121	8	49	0	C|0.996;T|0.004	1388
TYW3	127253	bcgsc.ca	37	1	75204447	75204447	+	Missense_Mutation	SNP	G	G	A	rs11538281	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TYW3	NM_138467	exon3	c.G329A	p.R110Q	.	.	191	12	70	0	G|0.963;A|0.037	70
TYW3	127253	bcgsc.ca	37	1	75217990	75217990	+	Silent	SNP	A	A	T	rs61741065	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	TYW3	NM_138467	exon5	c.A441T	p.T147T	.	.	210	20	107	0	A|0.962;T|0.038	70
UACA	55075	bcgsc.ca	37	15	70960685	70960685	+	Missense_Mutation	SNP	A	A	T	rs114734080	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UACA	NM_018003	exon16	c.T2338A	p.L780M	.	.	394	29	159	1	A|0.987;T|0.013	94
UAP1	6675	bcgsc.ca	37	1	162560114	162560114	+	Missense_Mutation	SNP	A	A	C	rs61743675	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UAP1	NM_003115	exon8	c.A1171C	p.K391Q	.	.	348	16	146	0	A|0.986;C|0.014	230
UAP1L1	91373	bcgsc.ca	37	9	139973820	139973820	+	Missense_Mutation	SNP	C	C	T	rs7037849	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UAP1L1	NM_207309	exon5	c.C956T	p.A319V	.	.	109	7	35	0	C|0.558;T|0.442	91
UAP1L1	91373	ucsc.edu	37	9	139975195	139975195	+	Silent	SNP	C	C	T	rs41302685	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UAP1L1	NM_207309	exon7	c.C1233T	p.N411N	.	.	63	6	25	0	C|0.927;T|0.073	91
UBA1	7317	ucsc.edu;bcgsc.ca	37	X	47070261	47070261	+	Silent	SNP	G	G	A	rs2230147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBA1	NM_153280	exon19	c.G2220A	p.P740P	.	.	138	16	46	0	0|0.004;A|0.126	227
UBA3	9039	bcgsc.ca	37	3	69113229	69113229	+	Silent	SNP	A	A	G	rs61737489	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBA3	NM_003968	exon7	c.T462C	p.T154T	.	.	239	12	117	0	A|0.986;G|0.014	227
UBAP2L	9898	bcgsc.ca	37	1	154209584	154209584	+	Silent	SNP	T	T	C	rs35699480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBAP2L	NM_001127320	exon8	c.T675C	p.T225T	.	.	395	9	142	0	T|0.981;C|0.019	91
UBASH3A	53347	bcgsc.ca	37	21	43824106	43824106	+	Missense_Mutation	SNP	A	A	G	rs2277798	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBASH3A	NM_018961	exon1	c.A52G	p.S18G	.	.	138	11	38	0	A|0.426;G|0.574	93
UBASH3A	53347	bcgsc.ca	37	21	43857602	43857602	+	Missense_Mutation	SNP	C	C	G	rs17114930	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBASH3A	NM_018961	exon11	c.C1398G	p.D466E	.	.	162	11	41	0	C|0.929;G|0.071;T|0.000	93
UBASH3B	84959	bcgsc.ca	37	11	122678778	122678778	+	Missense_Mutation	SNP	A	A	G	rs35343548	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBASH3B	NM_032873	exon13	c.A1706G	p.N569S	.	.	184	7	85	0	A|0.992;G|0.008	68
UBE2O	63893	bcgsc.ca	37	17	74387284	74387284	+	Missense_Mutation	SNP	C	C	T	rs3803739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE2O	NM_022066	exon18	c.G3619A	p.G1207S	.	.	140	8	50	0	C|0.584;T|0.416	272
UBE2O	63893	bcgsc.ca	37	17	74395733	74395733	+	Silent	SNP	C	C	T	rs34471769	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE2O	NM_022066	exon9	c.G1425A	p.S475S	.	.	302	13	111	0	C|0.983;T|0.017	272
UBE2T	29089	bcgsc.ca	37	1	202304868	202304868	+	Silent	SNP	T	T	C	rs14451	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE2T	NM_014176	exon2	c.A15G	p.S5S	.	.	216	15	40	0	T|0.421;G|0.086;C|0.373;A|0.120	90
UBE2U	148581	bcgsc.ca	37	1	64672526	64672526	+	Silent	SNP	G	G	A	rs35834004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE2U	NM_152489	exon3	c.G228A	p.P76P	.	.	319	15	191	0	G|0.945;A|0.055	90
UBE2U	148581	hgsc.bcm.edu;bcgsc.ca	37	1	64686577	64686577	+	Missense_Mutation	SNP	C	C	T	rs139887828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE2U	NM_152489	exon6	c.C493T	p.R165C	.	.	404	21	182	0	C|0.991;T|0.009	90
UBE3A	7337	bcgsc.ca	37	15	25602024	25602024	+	Silent	SNP	T	T	C	rs34670662	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE3A	NM_000462	exon9	c.A1782G	p.E594E	.	.	266	10	126	0	T|0.976;C|0.024	660
UBE4B	10277	bcgsc.ca	37	1	10218439	10218439	+	Silent	SNP	T	T	C	rs2273299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBE4B	NM_001105562	exon22	c.T2952C	p.S984S	.	.	166	12	69	1	T|0.658;C|0.342	229
UBP1	7342	bcgsc.ca	37	3	33431826	33431826	+	Silent	SNP	C	C	T	rs41285089	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBP1	NM_014517	exon16	c.G1620A	p.K540K	.	.	325	17	116	0	C|0.982;T|0.018	537
UBP1	7342	bcgsc.ca	37	3	33458266	33458266	+	Missense_Mutation	SNP	T	T	C	rs3736563	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBP1	NM_001128160	exon3	c.A326G	p.N109S	.	.	576	36	265	0	T|0.585;C|0.415	537
UBQLN1	29979	bcgsc.ca	37	9	86278817	86278817	+	Silent	SNP	C	C	A	rs7866234	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBQLN1	NM_013438	exon10	c.G1590T	p.L530L	.	.	228	12	102	0	C|0.700;A|0.300	90
UBQLN3	50613	bcgsc.ca	37	11	5530705	5530705	+	Silent	SNP	C	C	T	rs1368694	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBQLN3	NM_017481	exon2	c.G84A	p.T28T	.	.	299	15	107	0	C|0.945;T|0.055	93
UBQLNL	143630	bcgsc.ca	37	11	5536415	5536415	+	Silent	SNP	C	C	T	rs10769023	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBQLNL	NM_145053	exon1	c.G1257A	p.E419E	.	.	314	14	101	0	C|0.719;T|0.281	136
UBQLNL	143630	bcgsc.ca	37	11	5537045	5537045	+	Silent	SNP	T	T	G	rs872751	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBQLNL	NM_145053	exon1	c.A627C	p.P209P	.	.	171	11	82	0	T|0.688;G|0.312	136
UBR1	197131	bcgsc.ca	37	15	43335475	43335475	+	Missense_Mutation	SNP	T	T	A	rs34568456	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBR1	NM_174916	exon15	c.A1787T	p.K596M	.	.	221	9	80	0	T|0.996;A|0.004	91
UBR2	23304	bcgsc.ca	37	6	42571346	42571346	+	Silent	SNP	A	A	T	rs16895863	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBR2	NM_001184801	exon5	c.A552T	p.S184S	.	.	96	6	63	0	A|0.793;T|0.207	94
UBR3	130507	bcgsc.ca	37	2	170885930	170885930	+	Missense_Mutation	SNP	C	C	A	rs77587723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBR3	NM_172070	exon31	c.C4528A	p.L1510I	.	.	130	6	56	0	C|0.955;A|0.045	68
UBR4	23352	bcgsc.ca	37	1	19415439	19415439	+	Silent	SNP	C	C	T	rs16862517	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBR4	NM_020765	exon98	c.G14244A	p.L4748L	.	.	90	6	40	0	C|0.948;T|0.052	612
UBR4	23352	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19499560	19499560	+	Missense_Mutation	SNP	T	T	C	rs16862578	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBR4	NM_020765	exon25	c.A3319G	p.T1107A	.	.	94	14	49	0	T|0.825;C|0.175	612
UBTF	7343	bcgsc.ca	37	17	42287519	42287519	+	Silent	SNP	C	C	T	rs2071167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBTF	NM_014233	exon15	c.G1599A	p.K533K	.	.	569	20	201	0	C|0.599;T|0.401	90
UBTFL1	642623	bcgsc.ca	37	11	89819304	89819304	+	Missense_Mutation	SNP	A	A	G	rs78550664	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001143975	exon1	c.A187G	p.I63V	.	.	827	34	343	0	A|0.500;G|0.500	.
UBXN10	127733	hgsc.bcm.edu;bcgsc.ca	37	1	20517834	20517834	+	Silent	SNP	G	G	A	rs77365331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UBXN10	NM_152376	exon2	c.G780A	p.E260E	.	.	124	9	50	0	G|0.996;A|0.004	91
UCKL1	54963	bcgsc.ca	37	20	62577179	62577179	+	Silent	SNP	C	C	T	rs61743506	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UCKL1	NM_017859	exon4	c.G561A	p.T187T	.	.	409	16	156	2	C|0.998;T|0.002	115
UEVLD	55293	bcgsc.ca	37	11	18568542	18568542	+	Silent	SNP	A	A	T	rs34242612	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UEVLD	NM_018314	exon8	c.T771A	p.G257G	.	.	73	6	29	0	A|0.700;T|0.300	226
UFL1	23376	bcgsc.ca	37	6	96999725	96999725	+	Silent	SNP	C	C	T	rs1127175	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_015323	exon17	c.C1911T	p.D637D	.	.	443	10	247	0	C|0.662;T|0.338	.
UFSP2	55325	hgsc.bcm.edu;bcgsc.ca	37	4	186339770	186339770	+	Silent	SNP	A	A	G	rs78119878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UFSP2	NM_018359	exon3	c.T237C	p.S79S	.	.	218	16	91	0	A|0.995;G|0.005	90
UGDH	7358	bcgsc.ca	37	4	39512347	39512347	+	Silent	SNP	T	T	C	rs11544855	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGDH	NM_003359	exon4	c.A399G	p.P133P	.	.	523	18	171	0	T|0.904;C|0.096	156
UGGT1	56886	bcgsc.ca	37	2	128886642	128886642	+	Silent	SNP	G	G	A	rs73955931	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT1	NM_020120	exon13	c.G1266A	p.E422E	.	.	419	14	170	0	G|0.994;A|0.006	91
UGGT1	56886	bcgsc.ca	37	2	128931476	128931476	+	Missense_Mutation	SNP	A	A	G	rs73955974	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT1	NM_020120	exon30	c.A3416G	p.N1139S	.	.	204	8	60	0	A|0.994;G|0.006	91
UGGT1	56886	bcgsc.ca	37	2	128934400	128934400	+	Silent	SNP	T	T	C	rs2290111	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT1	NM_020120	exon32	c.T3552C	p.T1184T	.	.	220	8	71	0	T|0.323;C|0.677	91
UGGT1	56886	bcgsc.ca	37	2	128939817	128939817	+	Silent	SNP	G	G	A	rs1699	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT1	NM_020120	exon37	c.G4197A	p.K1399K	.	.	226	11	76	0	G|0.589;A|0.411	91
UGGT1	56886	bcgsc.ca	37	2	128945121	128945121	+	Silent	SNP	C	C	T	rs57084330	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT1	NM_020120	exon40	c.C4575T	p.I1525I	.	.	248	15	154	2	C|0.994;T|0.006	91
UGGT2	55757	bcgsc.ca	37	13	96540204	96540204	+	Missense_Mutation	SNP	T	T	G	rs12876018	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT2	NM_020121	exon26	c.A2980C	p.M994L	.	.	313	19	94	0	G|0.357;N|0.001	92
UGGT2	55757	bcgsc.ca	37	13	96553101	96553101	+	Missense_Mutation	SNP	T	T	C	rs35060832	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGGT2	NM_020121	exon22	c.A2594G	p.K865R	.	.	130	6	43	0	T|0.992;C|0.008	92
UGT1A10	54575	bcgsc.ca	37	2	234545579	234545579	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A10	NM_019075	exon1	c.A411T	p.L137F	.	.	280	10	123	0	.	27
UGT1A10	54575	bcgsc.ca	37	2	234545765	234545765	+	Silent	SNP	T	T	C	rs45523834	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A10	NM_019075	exon1	c.T597C	p.D199D	.	.	405	22	140	0	T|0.988;C|0.012	27
UGT1A10	54575	bcgsc.ca	37	2	234545861	234545861	+	Silent	SNP	C	C	T	rs17854828	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A10	NM_019075	exon1	c.C693T	p.A231A	.	.	335	13	143	0	C|0.868;T|0.132	27
UGT1A10	54575	bcgsc.ca	37	2	234545898	234545898	+	Missense_Mutation	SNP	C	C	A	rs28969685	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A10	NM_019075	exon1	c.C730A	p.L244I	.	.	322	12	126	0	C|0.987;A|0.013	27
UGT1A4	54657	bcgsc.ca	37	2	234627914	234627914	+	Silent	SNP	T	T	C	rs12468274	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A4	NM_007120	exon1	c.T448C	p.L150L	.	.	492	28	162	0	T|0.913;C|0.087	2
UGT1A4	54657	bcgsc.ca	37	2	234628270	234628270	+	Silent	SNP	G	G	A	rs3732217	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A4	NM_007120	exon1	c.G804A	p.P268P	.	.	290	14	76	0	G|0.918;A|0.082	2
UGT1A5	54579	bcgsc.ca	37	2	234621780	234621780	+	Missense_Mutation	SNP	T	T	C	rs3755323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.T143C	p.L48S	.	.	146	8	58	0	T|0.901;C|0.099	3
UGT1A5	54579	bcgsc.ca	37	2	234621787	234621787	+	Missense_Mutation	SNP	C	C	G	rs3755322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.C150G	p.D50E	.	.	149	8	56	0	C|0.711;G|0.289	3
UGT1A5	54579	bcgsc.ca	37	2	234621825	234621825	+	Missense_Mutation	SNP	T	T	C	rs3755321	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.T188C	p.L63P	.	.	181	8	69	0	T|0.890;C|0.110	3
UGT1A5	54579	bcgsc.ca	37	2	234621850	234621850	+	Silent	SNP	A	A	G	rs45470199	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.A213G	p.E71E	.	.	207	8	67	0	A|0.988;G|0.012	3
UGT1A5	54579	bcgsc.ca	37	2	234622061	234622061	+	Missense_Mutation	SNP	C	C	A	rs3755320	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.C424A	p.H142N	.	.	333	14	137	0	C|0.882;A|0.118	3
UGT1A5	54579	bcgsc.ca	37	2	234622110	234622110	+	Missense_Mutation	SNP	C	C	G	rs12475068	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.C473G	p.A158G	.	.	397	15	170	1	C|0.893;G|0.107	3
UGT1A5	54579	bcgsc.ca	37	2	234622282	234622282	+	Silent	SNP	C	C	T	rs17868333	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.C645T	p.L215L	.	.	454	13	177	0	C|0.895;T|0.105	3
UGT1A5	54579	bcgsc.ca	37	2	234622294	234622294	+	Silent	SNP	C	C	T	rs17863790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.C657T	p.A219A	.	.	458	18	173	0	C|0.892;T|0.108	3
UGT1A5	54579	bcgsc.ca	37	2	234622310	234622310	+	Missense_Mutation	SNP	C	C	T	rs17862867	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A5	NM_019078	exon1	c.C673T	p.H225Y	.	.	457	17	154	0	C|0.895;T|0.105	3
UGT1A6	54578	bcgsc.ca	37	2	234601881	234601881	+	Silent	SNP	C	C	A	rs142919887		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A6	NM_001072	exon1	c.C231A	p.I77I	.	.	202	8	97	0	C|1.000;A|0.000	71
UGT1A6	54578	bcgsc.ca	37	2	234602277	234602277	+	Silent	SNP	G	G	T	rs17863783	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT1A6	NM_001072	exon1	c.G627T	p.V209V	.	.	356	12	155	0	G|0.944;T|0.056	71
UGT2A2	574537	bcgsc.ca	37	4	70462042	70462042	+	Missense_Mutation	SNP	C	C	T	rs4148301	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001105677	exon3	c.G949A	p.G317R	.	.	183	6	71	0	C|0.916;T|0.084	.
UGT2B10	7365	bcgsc.ca	37	4	69681741	69681741	+	Missense_Mutation	SNP	G	G	A	rs115244875	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B10	.	.	.	.	.	.	408	15	127	0	G|0.983;A|0.017	65
UGT2B10	7365	bcgsc.ca	37	4	69681746	69681746	+	Silent	SNP	G	G	A	rs115319615	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B10	.	.	.	.	.	.	425	15	135	0	G|0.983;A|0.017	65
UGT2B11	10720	hgsc.bcm.edu	37	4	70066424	70066424	+	Missense_Mutation	SNP	T	T	C	rs201914215	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B11	NM_001073	exon6	c.A1324G	p.I442V	.	.	219	11	105	0	T|0.848;C|0.151	93
UGT2B17	7367	hgsc.bcm.edu	37	4	69416569	69416569	+	Missense_Mutation	SNP	C	C	T	rs145097129	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B17	NM_001077	exon5	c.G1139A	p.G380D	.	.	43	19	2	0	C|0.995;T|0.005	91
UGT2B28	54490	bcgsc.ca	37	4	70146804	70146804	+	Missense_Mutation	SNP	G	G	C	rs72551402		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B28	NM_053039	exon1	c.G586C	p.V196L	.	.	254	22	85	0	.	91
UGT2B4	7363	bcgsc.ca	37	4	70361342	70361342	+	Missense_Mutation	SNP	A	A	G	rs41299978		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B4	NM_021139	exon1	c.T238C	p.S80P	.	.	233	10	82	0	A|0.993;G|0.007	92
UGT2B7	7364	bcgsc.ca	37	4	69964391	69964391	+	Silent	SNP	C	C	A	rs34661811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B7	NM_001074	exon2	c.C855A	p.A285A	.	.	419	15	139	0	C|0.963;A|0.037	92
UGT2B7	7364	bcgsc.ca	37	4	69973921	69973921	+	Silent	SNP	C	C	T	rs57913007	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT2B7	NM_001074	exon5	c.C1191T	p.A397A	.	.	715	34	240	0	C|0.963;T|0.037	92
UGT3A1	133688	bcgsc.ca	37	5	35965611	35965611	+	Silent	SNP	A	A	G	rs61733467	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UGT3A1	NM_152404	exon4	c.T720C	p.L240L	.	.	305	10	154	0	A|0.988;G|0.012	92
UHRF1BP1L	23074	bcgsc.ca	37	12	100452832	100452832	+	Silent	SNP	C	C	T	rs11832216	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UHRF1BP1L	NM_015054	exon14	c.G2223A	p.P741P	.	.	321	17	146	0	C|0.936;T|0.064	24
UIMC1	51720	bcgsc.ca	37	5	176370402	176370402	+	Missense_Mutation	SNP	A	A	G	rs13360277	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UIMC1	NM_016290	exon10	c.T1531C	p.C511R	.	.	179	9	59	0	A|0.847;G|0.153	208
UIMC1	51720	bcgsc.ca	37	5	176378574	176378574	+	Silent	SNP	G	G	T	rs365132	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UIMC1	NM_016290	exon9	c.C1344A	p.T448T	.	.	302	22	167	0	G|0.406;T|0.594	208
UIMC1	51720	bcgsc.ca	37	5	176382995	176382995	+	Missense_Mutation	SNP	G	G	A	rs3733876	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UIMC1	NM_016290	exon8	c.C1304T	p.P435L	.	.	285	9	107	0	G|0.879;A|0.121	208
UIMC1	51720	bcgsc.ca;mdanderson.org	37	5	176402401	176402401	+	Silent	SNP	G	G	A	rs1700490	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UIMC1	NM_016290	exon3	c.C228T	p.I76I	.	.	929	66	354	0	G|0.412;N|0.001	208
ULBP2	80328	bcgsc.ca	37	6	150267527	150267527	+	Silent	SNP	A	A	C	rs61730070	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ULBP2	NM_025217	exon3	c.A369C	p.A123A	.	.	265	16	94	0	A|0.889;C|0.111	90
ULK4	54986	bcgsc.ca	37	3	41756965	41756965	+	Missense_Mutation	SNP	C	C	T	rs61744388	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ULK4	NM_017886	exon24	c.G2551A	p.V851I	.	.	133	9	52	0	C|0.772;T|0.228	297
ULK4	54986	bcgsc.ca	37	3	41756986	41756986	+	Missense_Mutation	SNP	A	A	T	rs61744385	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ULK4	NM_017886	exon24	c.T2530A	p.L844M	.	.	126	6	57	0	A|0.770;T|0.230	297
ULK4	54986	bcgsc.ca	37	3	41877414	41877414	+	Missense_Mutation	SNP	T	T	C	rs3774372	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ULK4	NM_017886	exon18	c.A1706G	p.K569R	.	.	532	12	239	0	T|0.818;C|0.182	297
ULK4	54986	bcgsc.ca	37	3	41952838	41952838	+	Silent	SNP	A	A	G	rs9877875	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ULK4	NM_017886	exon11	c.T1056C	p.G352G	.	.	439	13	220	1	A|0.948;G|0.052	297
UMODL1	89766	bcgsc.ca	37	21	43510514	43510514	+	Silent	SNP	C	C	G	rs2839464	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UMODL1	NM_173568	exon6	c.C897G	p.A299A	.	.	160	12	54	0	C|0.733;G|0.267	93
UNC13A	23025	bcgsc.ca	37	19	17741050	17741050	+	Silent	SNP	A	A	G	rs60048755		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UNC13A	NM_001080421	exon29	c.T3573C	p.D1191D	.	.	130	5	50	0	A|0.973;G|0.027	25
UNC13D	201294	bcgsc.ca	37	17	73824121	73824121	+	Silent	SNP	T	T	C	rs7210574	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UNC13D	NM_199242	exon32	c.A3198G	p.E1066E	.	.	175	8	62	0	T|0.444;C|0.556	92
UNC5C	8633	bcgsc.ca	37	4	96256616	96256616	+	Silent	SNP	A	A	G	rs4699423	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UNC5C	NM_003728	exon2	c.T291C	p.S97S	.	.	392	35	158	1	A|0.582;G|0.418	94
UNC5D	137970	bcgsc.ca	37	8	35616857	35616857	+	Missense_Mutation	SNP	G	G	A	rs35487923	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UNC5D	NM_080872	exon14	c.G2183A	p.R728K	.	.	84	7	62	0	G|0.990;A|0.010	96
UNC5D	137970	ucsc.edu;bcgsc.ca	37	8	35583815	35583815	+	Silent	SNP	G	G	C	rs6996645	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UNC5D	NM_080872	exon10	c.G1449C	p.V483V	.	.	84	11	48	0	G|0.839;C|0.161	96
UNC79	57578	bcgsc.ca	37	14	94088665	94088665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020818	exon30	c.T4555C	p.F1519L	.	.	77	4	45	0	.	.
UNK	85451	ucsc.edu;bcgsc.ca	37	17	73819525	73819525	+	Silent	SNP	C	C	T	rs8078208	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UNK	NM_001080419	exon15	c.C2199T	p.S733S	.	.	118	10	49	0	C|0.528;T|0.472	68
UPF2	26019	bcgsc.ca	37	10	12071397	12071397	+	Silent	SNP	G	G	A	rs11257490	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UPF2	NM_080599	exon3	c.C492T	p.L164L	.	.	325	27	158	0	G|0.765;A|0.235	515
UPK3A	7380	bcgsc.ca	37	22	45683116	45683116	+	Missense_Mutation	SNP	A	A	T	rs6006979	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UPK3A	NM_006953	exon3	c.A272T	p.Q91L	.	.	102	6	30	0	A|0.986;T|0.014	90
UQCR10	29796	ucsc.edu;bcgsc.ca	37	22	30163526	30163526	+	Missense_Mutation	SNP	A	A	G	rs76013375	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UQCR10	NM_001003684	exon1	c.A139G	p.I47V	.	.	41	6	25	0	A|0.883;G|0.117	23
URB1	9875	bcgsc.ca	37	21	33755763	33755763	+	Silent	SNP	G	G	A	rs2833795	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_014825	exon4	c.C535T	p.L179L	.	.	91	7	27	0	G|0.470;A|0.529	.
URB2	9816	bcgsc.ca	37	1	229772932	229772932	+	Missense_Mutation	SNP	A	A	G	rs3811474	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	URB2	NM_014777	exon4	c.A2572G	p.K858E	.	.	233	11	83	0	A|0.836;G|0.164	174
URB2	9816	bcgsc.ca	37	1	229773441	229773441	+	Silent	SNP	C	C	T	rs3811475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	URB2	NM_014777	exon4	c.C3081T	p.T1027T	.	.	206	8	87	0	C|0.856;T|0.144	174
URGCP	55665	bcgsc.ca	37	7	43916727	43916727	+	Missense_Mutation	SNP	T	T	G	rs2232108	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	URGCP	NM_001077663	exon6	c.A2335C	p.M779L	.	.	167	8	69	1	T|0.515;G|0.485	94
USH2A	7399	bcgsc.ca	37	1	215848808	215848808	+	Missense_Mutation	SNP	A	A	G	rs115884084	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USH2A	NM_206933	exon63	c.T12445C	p.W4149R	.	.	111	8	47	0	A|0.988;G|0.012	115
USH2A	7399	bcgsc.ca	37	1	215901531	215901531	+	Silent	SNP	T	T	A	rs61635304	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USH2A	NM_206933	exon61	c.A11907T	p.P3969P	.	.	193	9	80	1	T|0.961;A|0.039	115
USH2A	7399	bcgsc.ca	37	1	216052345	216052345	+	Silent	SNP	G	G	A	rs56829872	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USH2A	NM_206933	exon42	c.C8319T	p.S2773S	.	.	208	7	83	0	G|0.995;A|0.005	115
USH2A	7399	hgsc.bcm.edu;bcgsc.ca	37	1	215990450	215990450	+	Silent	SNP	G	G	A	rs73090721	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USH2A	NM_206933	exon48	c.C9459T	p.C3153C	.	.	334	18	93	0	G|0.994;A|0.006	115
USP14	9097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	180336	180336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP14	NM_005151	exon5	c.A401G	p.K134R	.	.	99	37	45	0	.	659
USP18	11274	bcgsc.ca	37	22	18650682	18650682	+	Missense_Mutation	SNP	C	C	T	rs3180408	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP18	NM_017414	exon6	c.C506T	p.T169M	.	.	362	16	117	0	C|0.674;N|0.000	658
USP20	10868	bcgsc.ca	37	9	132620855	132620855	+	Missense_Mutation	SNP	C	C	A	rs36086252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP20	NM_001008563	exon6	c.C308A	p.S103Y	.	.	129	6	39	0	C|0.997;A|0.003	658
USP24	23358	bcgsc.ca	37	1	55590233	55590233	+	Silent	SNP	T	T	C	rs187148846	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP24	NM_015306	exon35	c.A4029G	p.A1343A	.	.	85	6	48	0	T|0.996;C|0.004	521
USP24	23358	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	55620128	55620128	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP24	NM_015306	exon14	c.T1566C	p.T522T	.	.	115	24	68	0	.	521
USP25	29761	bcgsc.ca	37	21	17203785	17203785	+	Silent	SNP	A	A	T	rs2297248	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP25	NM_013396	exon16	c.A1830T	p.A610A	.	.	309	10	167	0	A|0.826;T|0.174	663
USP29	57663	bcgsc.ca	37	19	57641296	57641296	+	Missense_Mutation	SNP	A	A	G	rs34233382	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP29	NM_020903	exon4	c.A1253G	p.K418R	.	.	450	26	190	0	A|0.996;G|0.004	661
USP31	57478	bcgsc.ca	37	16	23098422	23098422	+	Missense_Mutation	SNP	A	A	G	rs13339649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP31	NM_020718	exon9	c.T1613C	p.I538T	.	.	238	7	96	0	A|0.742;G|0.258	663
USP33	23032	bcgsc.ca	37	1	78201745	78201745	+	Silent	SNP	G	G	T	rs2296227	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP33	NM_201626	exon7	c.C543A	p.A181A	.	.	249	13	107	0	G|0.550;T|0.450	659
USP34	9736	bcgsc.ca	37	2	61571095	61571095	+	Silent	SNP	T	T	G	rs11891480	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP34	NM_014709	exon16	c.A2355C	p.S785S	.	.	381	14	135	0	T|0.986;G|0.014	579
USP35	57558	bcgsc.ca	37	11	77920563	77920563	+	Silent	SNP	G	G	T	rs2510045	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP35	NM_020798	exon10	c.G1662T	p.P554P	.	.	115	9	37	0	G|0.761;T|0.239	637
USP35	57558	bcgsc.ca	37	11	77920930	77920930	+	Missense_Mutation	SNP	A	A	G	rs2511188	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP35	NM_020798	exon10	c.A2029G	p.I677V	.	.	108	6	69	0	A|0.644;G|0.356	637
USP35	57558	ucsc.edu	37	11	77921013	77921013	+	Silent	SNP	A	A	G	rs78142936	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP35	NM_020798	exon10	c.A2112G	p.G704G	.	.	54	5	27	0	A|0.936;G|0.064	637
USP39	10713	ucsc.edu;bcgsc.ca	37	2	85852667	85852667	+	Silent	SNP	G	G	A	rs2304564	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP39	NM_001256725	exon5	c.G576A	p.V192V	.	.	142	17	29	0	G|0.888;A|0.112	658
USP3	9960	bcgsc.ca	37	15	63882944	63882944	+	Silent	SNP	C	C	T	rs34527287	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP3	NM_006537	exon15	c.C1482T	p.D494D	.	.	89	8	39	0	C|0.975;T|0.025	658
USP3	9960	hgsc.bcm.edu;bcgsc.ca	37	15	63866314	63866314	+	Missense_Mutation	SNP	A	A	G	rs138310278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP3	NM_006537	exon10	c.A978G	p.I326M	.	.	300	15	97	0	A|1.000;G|0.000	658
USP43	124739	bcgsc.ca	37	17	9631569	9631569	+	Silent	SNP	T	T	C	rs61729500	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP43	NM_153210	exon15	c.T2634C	p.D878D	.	.	66	4	53	0	T|0.989;C|0.011	637
USP44	84101	bcgsc.ca	37	12	95926991	95926991	+	Missense_Mutation	SNP	T	T	C	rs7135642	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP44	NM_032147	exon2	c.A1042G	p.R348G	.	.	143	6	54	0	T|0.975;C|0.025	658
USP44	84101	bcgsc.ca	37	12	95927631	95927631	+	Silent	SNP	G	G	A	rs61750877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP44	NM_032147	exon2	c.C402T	p.D134D	.	.	305	9	165	0	G|0.950;A|0.050	658
USP50	373509	bcgsc.ca	37	15	50835873	50835873	+	Silent	SNP	T	T	C	rs60073047	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP50	NM_203494	exon3	c.A366G	p.A122A	.	.	275	8	86	0	T|0.983;C|0.017	658
USP53	54532	bcgsc.ca	37	4	120181724	120181724	+	Silent	SNP	A	A	G	rs35372126	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP53	NM_019050	exon10	c.A738G	p.T246T	.	.	315	18	135	0	A|0.753;G|0.247	660
USP54	159195	hgsc.bcm.edu;bcgsc.ca	37	10	75277310	75277310	+	Silent	SNP	C	C	A	rs144319515		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP54	NM_152586	exon18	c.G2874T	p.S958S	.	.	315	14	116	0	C|0.999;A|0.001	721
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	41027391	41027394	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AGTA	AGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	USP9X	NM_001039591	exon18	c.2556_2559del	p.852_853del	.	.	270	153	101	0	.	563
UTP11L	51118	bcgsc.ca	37	1	38485026	38485026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UTP11L	NM_016037	exon6	c.A538G	p.K180E	.	.	97	5	55	0	.	90
UTP14A	10813	bcgsc.ca	37	X	129055438	129055438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UTP14A	NM_006649	exon11	c.A1223G	p.E408G	.	.	192	6	112	0	.	132
UTP18	51096	hgsc.bcm.edu;bcgsc.ca	37	17	49365500	49365500	+	Missense_Mutation	SNP	C	C	T	rs61732669		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UTP18	NM_016001	exon11	c.C1439T	p.T480I	.	.	442	32	196	0	C|0.999;T|0.001	90
UTP18	51096	ucsc.edu;bcgsc.ca	37	17	49340637	49340637	+	Silent	SNP	T	T	C	rs28379319	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UTP18	NM_016001	exon2	c.T345C	p.V115V	.	.	81	10	49	0	T|0.982;C|0.018	90
UTRN	7402	bcgsc.ca	37	6	144779958	144779958	+	Silent	SNP	A	A	G	rs34481184	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UTRN	NM_007124	exon19	c.A2337G	p.E779E	.	.	307	12	116	0	A|0.974;G|0.026	95
UTRN	7402	bcgsc.ca	37	6	144878337	144878337	+	Silent	SNP	G	G	T	rs2293536	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UTRN	NM_007124	exon49	c.G7179T	p.A2393A	.	.	132	7	58	0	G|0.844;T|0.156	95
UVRAG	7405	bcgsc.ca	37	11	75851956	75851956	+	Silent	SNP	C	C	T	rs11825644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	UVRAG	NM_003369	exon15	c.C1599T	p.T533T	.	.	180	12	74	0	C|0.992;T|0.008	229
VAC14	55697	bcgsc.ca	37	16	70731093	70731093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VAC14	NM_018052	exon16	c.T1904C	p.L635P	.	.	117	5	70	0	.	227
VARS2	57176	bcgsc.ca	37	6	30888876	30888876	+	Missense_Mutation	SNP	C	C	T	rs61746524	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VARS2	NM_001167734	exon16	c.C1604T	p.S535F	.	.	138	7	35	0	C|0.984;T|0.016	26
VARS2	57176	bcgsc.ca	37	6	30892242	30892242	+	Silent	SNP	C	C	T	rs116118019	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VARS2	NM_001167734	exon26	c.C2668T	p.L890L	.	.	190	15	45	0	C|0.985;T|0.015	26
VARS	7407	hgsc.bcm.edu;bcgsc.ca	37	6	31760289	31760289	+	Silent	SNP	G	G	A	rs61730575	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VARS	NM_006295	exon5	c.C666T	p.P222P	.	.	339	19	129	0	G|0.991;A|0.009	93
VBP1	7411	bcgsc.ca	37	X	154467113	154467113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VBP1	NM_003372	exon6	c.A584G	p.N195S	.	.	219	8	86	0	.	226
VCAN	1462	bcgsc.ca	37	5	82849319	82849319	+	Silent	SNP	C	C	T	rs16900564	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VCAN	NM_004385	exon11	c.C9630T	p.H3210H	.	.	111	7	48	0	C|0.929;T|0.071	238
VCX3A	51481	bcgsc.ca	37	X	6451856	6451856	+	Missense_Mutation	SNP	A	A	G	rs75344159		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VCX3A	NM_016379	exon3	c.T491C	p.L164P	.	.	588	20	184	2	.	22
VDAC2	7417	bcgsc.ca	37	10	76982013	76982013	+	Silent	SNP	T	T	C	rs17849278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	VDAC2,NS,NS,0	VDAC2	NM_001184783	exon9	c.T633C	p.N211N	.	.	281	13	126	0	T|0.982;C|0.018	93
VDAC2	7417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76971363	76971363	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VDAC2	NM_001184783	exon3	c.A22C	p.R8R	.	.	152	51	85	0	.	93
VIM	7431	bcgsc.ca	37	10	17275861	17275861	+	Silent	SNP	C	C	T	rs4903	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VIM	NM_003380	exon5	c.C813T	p.D271D	.	.	105	5	35	0	C|0.938;T|0.062	291
VIPR2	7434	bcgsc.ca	37	7	158835780	158835780	+	Silent	SNP	G	G	A	rs7792767	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VIPR2	NM_003382	exon6	c.C543T	p.D181D	.	.	122	5	39	0	G|0.950;A|0.050	91
VKORC1	79001	bcgsc.ca	37	16	31102589	31102589	+	Missense_Mutation	SNP	G	G	A	rs7200749	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VKORC1	NM_206824	exon2	c.C248T	p.P83L	.	.	124	7	40	1	G|0.926;A|0.074	90
VLDLR	7436	bcgsc.ca	37	9	2635545	2635545	+	Missense_Mutation	SNP	G	G	A	rs6149	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VLDLR	NM_003383	exon2	c.G175A	p.V59I	.	.	275	17	158	0	G|0.934;A|0.066	516
VN1R1	57191	bcgsc.ca	37	19	57967049	57967049	+	Missense_Mutation	SNP	G	G	T	rs61744949	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VN1R1	NM_020633	exon1	c.C806A	p.A269D	.	.	789	32	344	0	G|0.675;T|0.325	91
VN1R1	57191	bcgsc.ca	37	19	57967133	57967133	+	Missense_Mutation	SNP	G	G	A	rs28649880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VN1R1	NM_020633	exon1	c.C722T	p.S241F	.	.	592	25	278	0	G|0.675;A|0.325	91
VN1R2	317701	bcgsc.ca	37	19	53762684	53762684	+	Silent	SNP	T	T	C	rs61734065	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VN1R2	NM_173856	exon1	c.T1056C	p.A352A	.	.	468	15	161	1	T|0.983;C|0.017	90
VN1R4	317703	bcgsc.ca	37	19	53770846	53770846	+	Missense_Mutation	SNP	C	C	G	rs148896466	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VN1R4	NM_173857	exon1	c.G73C	p.V25L	.	.	451	18	126	1	C|0.953;G|0.047	92
VNN1	8876	bcgsc.ca	37	6	133015271	133015271	+	Missense_Mutation	SNP	T	T	C	rs2272996	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VNN1	NM_004666	exon3	c.A392G	p.N131S	.	.	304	10	92	0	T|0.736;C|0.264	93
VPS13C	54832	bcgsc.ca	37	15	62165577	62165577	+	Silent	SNP	G	G	A	rs17303894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS13C	NM_020821	exon78	c.C10446T	p.T3482T	.	.	370	15	180	0	G|0.932;A|0.068	92
VPS13C	54832	bcgsc.ca	37	15	62208039	62208039	+	Silent	SNP	T	T	C	rs35606606	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS13C	NM_020821	exon61	c.A8238G	p.T2746T	.	.	100	5	46	0	T|0.994;C|0.006	92
VPS13C	54832	bcgsc.ca	37	15	62243174	62243174	+	Silent	SNP	G	G	A	rs141116283	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS13C	NM_020821	exon40	c.C4506T	p.D1502D	.	.	365	8	176	0	G|0.999;A|0.001	92
VPS13C	54832	bcgsc.ca	37	15	62253919	62253919	+	Silent	SNP	G	G	C	rs36089949	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS13C	NM_020821	exon35	c.C3777G	p.T1259T	.	.	159	7	81	0	G|0.997;C|0.003	92
VPS13C	54832	hgsc.bcm.edu;bcgsc.ca	37	15	62269392	62269392	+	Missense_Mutation	SNP	G	G	T	rs115290371	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS13C	NM_020821	exon24	c.C2297A	p.T766N	.	.	270	13	88	0	G|0.987;T|0.013	92
VPS13D	55187	hgsc.bcm.edu;bcgsc.ca	37	1	12304644	12304644	+	Silent	SNP	C	C	T	rs34489138	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS13D	NM_015378	exon5	c.C417T	p.S139S	.	.	182	9	97	0	C|0.994;T|0.006	95
VPS25	84313	bcgsc.ca	37	17	40931054	40931054	+	Silent	SNP	T	T	C	rs3744239	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS25	NM_032353	exon6	c.T498C	p.T166T	.	.	167	8	54	0	T|0.877;C|0.123	90
VPS41	27072	bcgsc.ca	37	7	38829465	38829465	+	Silent	SNP	C	C	T	rs1001476	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS41	NM_014396	exon10	c.G720A	p.V240V	.	.	198	11	57	0	T|0.114;G|0.197	93
VPS4A	27183	bcgsc.ca	37	16	69349994	69349994	+	Silent	SNP	G	G	A	rs80035728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_013245	exon2	c.G105A	p.A35A	.	.	86	6	44	0	G|0.980;A|0.020	.
VPS52	6293	bcgsc.ca	37	6	33237285	33237285	+	Silent	SNP	G	G	A	rs77672870	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS52	NM_022553	exon5	c.C354T	p.A118A	.	.	146	8	52	0	G|0.987;A|0.013	95
VPS8	23355	bcgsc.ca	37	3	184633247	184633247	+	Silent	SNP	A	A	C	rs4686879	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VPS8	NM_001009921	exon27	c.A2367C	p.L789L	.	.	302	8	116	1	A|0.516;C|0.484	91
VSIG10	54621	bcgsc.ca	37	12	118506186	118506186	+	Silent	SNP	A	A	T	rs67405503	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019086	exon8	c.T1563A	p.L521L	.	.	524	36	144	1	A|0.602;T|0.398	.
VSIG10	54621	bcgsc.ca	37	12	118509191	118509191	+	Missense_Mutation	SNP	G	G	A	rs7307331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_019086	exon6	c.C1303T	p.H435Y	.	.	174	11	52	0	G|0.472;A|0.528	.
VSIG10L	147645	bcgsc.ca	37	19	51837171	51837171	+	Silent	SNP	A	A	G	rs7255306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163922	exon9	c.T2448C	p.P816P	.	.	102	7	39	0	A|0.563;G|0.437	.
VSIG10L	147645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51840536	51840536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163922	exon7	c.G2261T	p.G754V	.	.	70	22	26	0	.	.
VSIG10L	147645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51840537	51840537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001163922	exon7	c.G2260T	p.G754W	.	.	71	25	26	0	.	.
VSIG1	340547	bcgsc.ca	37	X	107320539	107320539	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VSIG1	NM_001170553	exon8	c.A1200G	p.P400P	.	.	122	5	51	0	.	132
VSTM2B	342865	bcgsc.ca	37	19	30019349	30019349	+	Missense_Mutation	SNP	A	A	G	rs148923526	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VSTM2B	NM_001146339	exon3	c.A277G	p.K93E	.	.	162	6	52	0	A|0.998;G|0.002	68
VSX1	30813	bcgsc.ca	37	20	25059381	25059381	+	Silent	SNP	A	A	T	rs56157240	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VSX1	NM_199425	exon3	c.T711A	p.P237P	.	.	141	10	65	0	A|0.749;T|0.251	90
VSX1	30813	bcgsc.ca	37	20	25059546	25059546	+	Silent	SNP	T	T	C	rs12480307	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VSX1	NM_014588	exon3	c.A546G	p.A182A	.	.	145	6	54	0	T|0.715;C|0.285	90
VTA1	51534	bcgsc.ca	37	6	142468512	142468512	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VTA1	NM_016485	exon1	c.C88A	p.R30R	.	.	61	4	47	0	.	90
VWA3A	146177	bcgsc.ca	37	16	22137603	22137603	+	Missense_Mutation	SNP	G	G	A	rs55732851	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VWA3A	NM_173615	exon17	c.G1637A	p.C546Y	.	.	189	11	76	0	G|0.908;A|0.092	1
VWA3A	146177	bcgsc.ca	37	16	22155629	22155629	+	Missense_Mutation	SNP	A	A	G	rs9937453	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VWA3A	NM_173615	exon26	c.A2654G	p.N885S	.	.	454	14	132	0	A|0.627;G|0.373	1
VWA3B	200403	bcgsc.ca	37	2	98709684	98709684	+	Silent	SNP	T	T	C	rs298917	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VWA3B	NM_144992	exon2	c.T129C	p.H43H	.	.	257	8	99	0	T|0.871;C|0.129	139
VWA5A	4013	bcgsc.ca	37	11	124006972	124006972	+	Missense_Mutation	SNP	G	G	T	rs2276054	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VWA5A	NM_014622	exon12	c.G1496T	p.S499I	.	.	163	10	57	0	G|0.877;T|0.123	92
VWA5A	4013	bcgsc.ca	37	11	124006993	124006993	+	Missense_Mutation	SNP	G	G	A	rs2276053	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VWA5A	NM_014622	exon12	c.G1517A	p.R506K	.	.	148	9	57	0	G|0.883;A|0.117	92
VWA5B2	90113	bcgsc.ca	37	3	183958689	183958689	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_138345	exon16	c.C2851G	p.P951A	.	.	137	6	39	0	.	.
VWDE	221806	bcgsc.ca	37	7	12406989	12406989	+	Missense_Mutation	SNP	C	C	G	rs6460939	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	VWDE	NM_001135924	exon13	c.G2892C	p.K964N	.	.	205	9	117	0	C|0.513;G|0.487	68
WARS	7453	bcgsc.ca	37	14	100828122	100828122	+	Missense_Mutation	SNP	T	T	A	rs140996628	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WARS	NM_004184	exon3	c.A236T	p.E79V	.	.	532	15	106	1	T|1.000;A|0.000	153
WBP2NL	164684	bcgsc.ca	37	22	42394835	42394835	+	Missense_Mutation	SNP	C	C	G	rs17002790	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WBP2NL	NM_152613	exon1	c.C13G	p.Q5E	.	.	71	6	31	0	C|0.967;G|0.033	92
WBP2NL	164684	ucsc.edu;bcgsc.ca	37	22	42423110	42423110	+	Missense_Mutation	SNP	G	G	C	rs2301521	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WBP2NL	NM_152613	exon6	c.G855C	p.Q285H	.	.	69	10	23	0	G|0.245;C|0.755	92
WBP4	11193	hgsc.bcm.edu;bcgsc.ca	37	13	41656881	41656881	+	Missense_Mutation	SNP	A	A	G	rs115960433	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WBP4	NM_007187	exon10	c.A962G	p.Y321C	.	.	142	7	61	0	A|0.996;G|0.004	289
WDFY1	57590	bcgsc.ca	37	2	224765956	224765956	+	Silent	SNP	C	C	T	rs2272317	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDFY1	NM_020830	exon5	c.G429A	p.T143T	.	.	79	6	33	0	C|0.938;T|0.062	226
WDFY2	115825	bcgsc.ca	37	13	52313195	52313195	+	Silent	SNP	C	C	T	rs1885854	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDFY2	NM_052950	exon7	c.C609T	p.T203T	.	.	243	12	59	0	C|0.887;T|0.113	90
WDFY4	57705	bcgsc.ca	37	10	49998824	49998824	+	Silent	SNP	C	C	T	rs10857644	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDFY4	NM_020945	exon23	c.C4119T	p.G1373G	.	.	166	10	42	0	C|0.835;T|0.165	22
WDFY4	57705	bcgsc.ca	37	10	50034833	50034833	+	Missense_Mutation	SNP	G	G	A	rs6537579	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDFY4	NM_020945	exon36	c.G6100A	p.G2034S	.	.	320	15	79	0	G|0.801;A|0.199	22
WDFY4	57705	bcgsc.ca	37	10	50109895	50109895	+	Missense_Mutation	SNP	A	A	C	rs35423873	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDFY4	NM_020945	exon47	c.A7573C	p.T2525P	.	.	114	11	35	0	A|0.874;C|0.126	22
WDHD1	11169	bcgsc.ca	37	14	55422317	55422317	+	Silent	SNP	G	G	A	rs61747434	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDHD1	NM_007086	exon24	c.C3012T	p.T1004T	.	.	297	9	93	1	G|0.965;A|0.035	91
WDHD1	11169	bcgsc.ca	37	14	55462356	55462356	+	Missense_Mutation	SNP	C	C	T	rs61744418	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDHD1	NM_007086	exon11	c.G1118A	p.R373Q	.	.	207	13	106	0	C|0.966;T|0.034	91
WDR19	57728	bcgsc.ca	37	4	39216221	39216221	+	Silent	SNP	C	C	T	rs2167494	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR19	NM_025132	exon10	c.C891T	p.C297C	.	.	262	15	109	0	C|0.721;T|0.279	67
WDR19	57728	bcgsc.ca	37	4	39236391	39236391	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR19	NM_025132	exon20	c.A2259G	p.R753R	.	.	129	5	47	0	.	67
WDR24	84219	bcgsc.ca	37	16	735921	735921	+	Silent	SNP	T	T	C	rs763053	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR24	NM_032259	exon5	c.A1521G	p.A507A	.	.	127	7	54	0	T|0.601;C|0.399	91
WDR41	55255	hgsc.bcm.edu;bcgsc.ca	37	5	76732219	76732219	+	Missense_Mutation	SNP	C	C	A	rs150624821	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR41	NM_018268	exon12	c.G1094T	p.G365V	.	.	146	11	64	0	C|0.997;A|0.003	90
WDR44	54521	ucsc.edu;bcgsc.ca	37	X	117528142	117528142	+	Silent	SNP	C	C	T	rs6603401	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR44	NM_001184965	exon5	c.C951T	p.T317T	.	.	126	15	45	0	C|0.475;T|0.525	133
WDR48	57599	bcgsc.ca	37	3	39111140	39111140	+	Silent	SNP	C	C	A	rs2293312	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR48	NM_020839	exon7	c.C577A	p.R193R	.	.	125	9	64	0	C|0.529;N|0.000	91
WDR5	11091	bcgsc.ca	37	9	137017126	137017126	+	Silent	SNP	A	A	G	rs34523253	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR5	NM_052821	exon8	c.A606G	p.S202S	.	.	144	6	35	0	A|0.920;G|0.080	90
WDR53	348793	bcgsc.ca;mdanderson.org	37	3	196281263	196281263	+	Missense_Mutation	SNP	C	C	T	rs61730533	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR53	NM_182627	exon4	c.G896A	p.G299D	.	.	1365	91	498	0	C|0.942;T|0.058	154
WDR55	54853	bcgsc.ca	37	5	140048209	140048209	+	Silent	SNP	T	T	C	rs2251860	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR55	NM_017706	exon4	c.T393C	p.N131N	.	.	277	16	132	0	T|0.493;C|0.507	91
WDR59	79726	bcgsc.ca	37	16	75018874	75018874	+	Silent	SNP	G	G	A	rs12448858	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR59	NM_030581	exon1	c.C42T	p.F14F	.	.	88	5	45	0	G|0.886;A|0.114	92
WDR60	55112	bcgsc.ca	37	7	158719106	158719106	+	Silent	SNP	G	G	A	rs61747095	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR60	NM_018051	exon19	c.G2385A	p.L795L	.	.	158	6	95	0	G|0.975;A|0.025	92
WDR60	55112	ucsc.edu;bcgsc.ca	37	7	158672619	158672619	+	Missense_Mutation	SNP	A	A	G	rs2788478	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR60	NM_018051	exon5	c.A818G	p.Q273R	.	.	263	29	191	1	A|0.435;G|0.565	92
WDR6	11180	bcgsc.ca	37	3	49050368	49050368	+	Silent	SNP	C	C	T	rs143317829	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR6	NM_018031	exon2	c.C1491T	p.I497I	.	.	106	5	51	0	C|0.996;T|0.004	90
WDR62	284403	ucsc.edu	37	19	36594063	36594063	+	Silent	SNP	C	C	T	rs17851502	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR62	NM_001083961	exon29	c.C3468T	p.L1156L	.	.	75	10	18	0	C|0.869;T|0.131	90
WDR63	126820	bcgsc.ca	37	1	85594466	85594466	+	Missense_Mutation	SNP	G	G	A	rs709783	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR63	NM_145172	exon21	c.G2393A	p.R798H	.	.	275	11	110	0	G|0.780;A|0.220	95
WDR65	149465	bcgsc.ca	37	1	43649334	43649334	+	Missense_Mutation	SNP	G	G	T	rs6663799	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR65	NM_001195831	exon4	c.G547T	p.A183S	.	.	180	8	90	1	G|0.974;T|0.026	91
WDR65	149465	bcgsc.ca	37	1	43664212	43664212	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR65	NM_001195831	exon8	c.T1323C	p.S441S	.	.	127	6	48	0	.	91
WDR65	149465	bcgsc.ca	37	1	43664218	43664218	+	Silent	SNP	C	C	T	rs603123	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR65	NM_001195831	exon8	c.C1329T	p.H443H	.	.	129	8	48	0	C|0.742;T|0.258	91
WDR66	144406	bcgsc.ca	37	12	122392038	122392038	+	Missense_Mutation	SNP	C	C	T	rs11043265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR66	NM_001178003	exon10	c.C1333T	p.L445F	.	.	135	8	57	0	C|0.752;T|0.248	92
WDR72	256764	bcgsc.ca	37	15	53907948	53907948	+	Missense_Mutation	SNP	G	G	A	rs17730281	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR72	NM_182758	exon15	c.C2455T	p.L819F	.	.	180	8	99	0	G|0.773;A|0.227	92
WDR74	54663	ucsc.edu	37	11	62606596	62606596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR74	NM_018093	exon4	c.C283A	p.Q95K	.	.	40	4	11	0	.	23
WDR86	349136	bcgsc.ca	37	7	151079054	151079054	+	Silent	SNP	G	G	A	rs116376908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_198285	exon5	c.C876T	p.S292S	.	.	119	13	41	0	G|0.972;A|0.028	.
WDR87	83889	bcgsc.ca	37	19	38377773	38377773	+	Missense_Mutation	SNP	G	G	A	rs34785154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_031951	exon6	c.C6421T	p.R2141W	.	.	301	10	155	1	G|0.663;A|0.337	.
WDR87	83889	bcgsc.ca	37	19	38378107	38378107	+	Silent	SNP	G	G	A	rs60704260	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_031951	exon6	c.C6087T	p.S2029S	.	.	544	42	278	1	G|0.650;A|0.350	.
WDR87	83889	bcgsc.ca	37	19	38382328	38382328	+	Silent	SNP	C	C	T	rs953370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_031951	exon5	c.G3141A	p.P1047P	.	.	132	12	60	0	C|0.366;T|0.634	.
WDR87	83889	bcgsc.ca;mdanderson.org	37	19	38379446	38379446	+	Missense_Mutation	SNP	C	C	T	rs6508750	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_031951	exon6	c.G4748A	p.R1583Q	.	.	1472	98	313	1	C|0.387;T|0.613	.
WDR88	126248	bcgsc.ca	37	19	33647379	33647379	+	Missense_Mutation	SNP	T	T	C	rs11881580	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR88	NM_173479	exon7	c.T928C	p.C310R	.	.	110	8	34	0	T|0.773;C|0.227	154
WDR92	116143	bcgsc.ca	37	2	68364478	68364478	+	Missense_Mutation	SNP	T	T	C	rs13009282	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR92	NM_001256476	exon6	c.A721G	p.M241V	.	.	145	9	91	0	T|0.804;C|0.196	68
WDR93	56964	bcgsc.ca	37	15	90272256	90272256	+	Missense_Mutation	SNP	C	C	T	rs7178234	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR93	NM_020212	exon10	c.C1055T	p.T352M	.	.	154	7	33	0	C|0.967;T|0.033	24
WDR96	80217	bcgsc.ca	37	10	105927460	105927460	+	Silent	SNP	C	C	T	rs17750886	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDR96	NM_025145	exon22	c.G2727A	p.P909P	.	.	86	5	35	0	C|0.910;T|0.090	95
WDSUB1	151525	bcgsc.ca	37	2	160114315	160114315	+	Silent	SNP	G	G	A	rs3815475	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDSUB1	NM_152528	exon8	c.C906T	p.D302D	.	.	191	11	107	0	G|0.891;A|0.109	90
WDSUB1	151525	bcgsc.ca	37	2	160132089	160132089	+	Missense_Mutation	SNP	T	T	G	rs16843852	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDSUB1	NM_152528	exon4	c.A644C	p.K215T	.	.	348	16	156	0	G|0.185;N|0.000	90
WDYHV1	55093	bcgsc.ca	37	8	124440174	124440174	+	Missense_Mutation	SNP	A	A	G	rs6999234	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDYHV1	NM_018024	exon2	c.A94G	p.I32V	.	.	213	12	45	0	A|0.626;G|0.374	92
WDYHV1	55093	bcgsc.ca	37	8	124448736	124448736	+	Missense_Mutation	SNP	A	A	G	rs7014678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDYHV1	NM_018024	exon4	c.A278G	p.N93S	.	.	1195	39	207	2	A|0.626;G|0.374	92
WDYHV1	55093	bcgsc.ca	37	8	124448804	124448804	+	Missense_Mutation	SNP	T	T	A	rs6470147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDYHV1	NM_018024	exon4	c.T346A	p.F116I	.	.	836	21	132	0	T|0.626;A|0.374	92
WDYHV1	55093	bcgsc.ca	37	8	124449466	124449466	+	Missense_Mutation	SNP	C	C	T	rs3824250	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WDYHV1	NM_018024	exon5	c.C400T	p.R134C	.	.	280	12	55	0	C|0.628;N|0.000	92
WEE2	494551	bcgsc.ca	37	7	141420768	141420768	+	Silent	SNP	A	A	G	rs6967301	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WEE2	NM_001105558	exon5	c.A792G	p.A264A	.	.	159	15	37	0	A|0.485;G|0.515	305
WFS1	7466	bcgsc.ca	37	4	6303327	6303327	+	Missense_Mutation	SNP	C	C	T	rs2230720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WFS1	NM_001145853	exon8	c.C1805T	p.A602V	.	.	227	8	57	0	C|0.972;T|0.028	91
WFS1	7466	hgsc.bcm.edu;bcgsc.ca	37	4	6303319	6303319	+	Silent	SNP	C	C	A	rs71524361	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WFS1	NM_001145853	exon8	c.C1797A	p.V599V	.	.	220	11	58	0	A|0.013;C|0.987	91
WFS1	7466	hgsc.bcm.edu;bcgsc.ca	37	4	6303322	6303322	+	Silent	SNP	C	C	T	rs71524362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WFS1	NM_001145853	exon8	c.C1800T	p.T600T	.	.	222	10	56	0	C|0.987;T|0.013	91
WHSC1L1	54904	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	38153339	38153339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WHSC1L1	NM_023034	exon16	c.G2890A	p.V964I	.	.	116	10	64	0	.	658
WISP3	8838	hgsc.bcm.edu;bcgsc.ca	37	6	112382364	112382364	+	Silent	SNP	A	A	T	rs139375158		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WISP3	NM_198239	exon2	c.A273T	p.G91G	.	.	222	13	94	0	A|1.000;T|0.000	90
WNK2	65268	ucsc.edu	37	9	95993170	95993170	+	Silent	SNP	A	A	G	rs7048527	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WNK2	NM_006648	exon3	c.A855G	p.T285T	.	.	52	6	24	0	A|0.821;G|0.179	765
WNK3	65267	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	54263455	54263455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WNK3	NM_020922	exon20	c.C4544T	p.S1515L	.	.	241	15	76	0	.	441
WNK4	65266	bcgsc.ca	37	17	40947163	40947163	+	Silent	SNP	G	G	A	rs2290042	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WNK4	NM_032387	exon14	c.G2724A	p.P908P	.	.	439	30	191	0	G|0.918;A|0.082	336
WNK4	65266	bcgsc.ca	37	17	40947320	40947320	+	Missense_Mutation	SNP	C	C	T	rs2290041	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WNK4	NM_032387	exon14	c.C2881T	p.P961S	.	.	217	18	79	0	C|0.927;T|0.073	336
WRAP53	55135	bcgsc.ca	37	17	7592560	7592560	+	Silent	SNP	C	C	T	rs2287498	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WRAP53	NM_001143991	exon3	c.C450T	p.F150F	.	.	217	8	46	0	C|0.843;T|0.157	115
WRAP53	55135	bcgsc.ca	37	17	7606722	7606722	+	Missense_Mutation	SNP	C	C	G	rs7640	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WRAP53	NM_001143991	exon11	c.C1565G	p.A522G	.	.	140	10	65	0	C|0.592;G|0.408	115
WRN	7486	bcgsc.ca	37	8	31024638	31024638	+	Silent	SNP	C	C	T	rs1801196	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WRN	NM_000553	exon34	c.C4083T	p.S1361S	.	.	138	5	76	0	C|0.728;T|0.272	1036
WT1-AS	51352	ucsc.edu	37	11	32461561	32461561	+	RNA	SNP	A	A	G	rs115320154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WT1-AS	.	.	.	.	.	.	150	15	82	0	A|0.980;G|0.020	68
WTAP	9589	bcgsc.ca	37	6	160169258	160169258	+	Silent	SNP	G	G	T	rs7766006	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WTAP	NM_001270533	exon6	c.G309T	p.P103P	.	.	422	12	143	1	G|0.800;T|0.200	90
WWC1	23286	ucsc.edu;bcgsc.ca	37	5	167850748	167850748	+	Silent	SNP	A	A	G	rs12054944	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WWC1	NM_015238	exon11	c.A1485G	p.S495S	.	.	82	6	43	0	A|0.448;G|0.552	157
WWP1	11059	bcgsc.ca	37	8	87439926	87439926	+	Silent	SNP	C	C	T	rs60177164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WWP1	NM_007013	exon11	c.C1212T	p.T404T	.	.	298	7	62	0	C|0.862;T|0.138	659
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87473479	87473479	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	WWP1	NM_007013	exon23	c.A2526G	p.V842V	.	.	346	61	86	0	.	659
XAF1	54739	bcgsc.ca	37	17	6663895	6663895	+	Silent	SNP	C	C	G	rs2271231	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XAF1	NM_017523	exon4	c.C396G	p.R132R	.	.	206	15	71	0	C|0.536;G|0.464	90
XAF1	54739	bcgsc.ca	37	17	6674016	6674016	+	Missense_Mutation	SNP	G	G	A	rs34625877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XAF1	NM_017523	exon6	c.G562A	p.E188K	.	.	203	6	79	0	G|0.981;A|0.019	90
XCR1	2829	bcgsc.ca	37	3	46063329	46063329	+	Silent	SNP	T	T	C	rs2230322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XCR1	NM_001024644	exon2	c.A111G	p.L37L	.	.	161	6	65	0	T|0.794;C|0.206	523
XG	7499	bcgsc.ca	37	X	2707734	2707734	+	Silent	SNP	C	C	T	rs17090623	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XG	NM_001141920	exon5	c.C240T	p.S80S	.	.	282	18	93	0	C|0.922;0|0.004	131
XIRP1	165904	bcgsc.ca	37	3	39226436	39226436	+	Missense_Mutation	SNP	C	C	T	rs58805228	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP1	NM_194293	exon2	c.G4501A	p.V1501M	.	.	113	6	47	0	C|0.930;T|0.070	158
XIRP2	129446	bcgsc.ca	37	2	168099738	168099738	+	Silent	SNP	T	T	C	rs10497323	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.T1836C	p.G612G	.	.	427	22	148	0	T|0.689;C|0.311	104
XIRP2	129446	bcgsc.ca	37	2	168099775	168099775	+	Missense_Mutation	SNP	C	C	G	rs16853305	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.C1873G	p.P625A	.	.	402	23	161	0	C|0.784;G|0.216	104
XIRP2	129446	bcgsc.ca	37	2	168099796	168099796	+	Missense_Mutation	SNP	T	T	C	rs16853306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.T1894C	p.Y632H	.	.	394	25	165	0	T|0.775;C|0.225	104
XIRP2	129446	bcgsc.ca	37	2	168103863	168103863	+	Silent	SNP	G	G	A	rs7581012	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G5961A	p.A1987A	.	.	148	13	76	0	G|0.836;A|0.164	104
XIRP2	129446	bcgsc.ca	37	2	168103925	168103925	+	Missense_Mutation	SNP	A	A	G	rs7607246	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.A6023G	p.N2008S	.	.	189	11	103	0	A|0.837;G|0.163	104
XIRP2	129446	bcgsc.ca	37	2	168104370	168104370	+	Silent	SNP	A	A	C	rs61748715	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.A6468C	p.T2156T	.	.	149	7	135	1	A|0.860;C|0.140	104
XIRP2	129446	bcgsc.ca	37	2	168104627	168104627	+	Missense_Mutation	SNP	G	G	A	rs61750760	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G6725A	p.R2242Q	.	.	309	28	178	0	G|0.842;A|0.158	104
XIRP2	129446	bcgsc.ca	37	2	168104988	168104988	+	Missense_Mutation	SNP	G	G	T	rs59889092	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G7086T	p.M2362I	.	.	161	12	81	0	G|0.860;T|0.140	104
XIRP2	129446	bcgsc.ca	37	2	168106085	168106085	+	Missense_Mutation	SNP	G	G	A	rs16853328	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G8183A	p.S2728N	.	.	241	16	126	1	G|0.837;A|0.163	104
XIRP2	129446	bcgsc.ca	37	2	168106246	168106246	+	Missense_Mutation	SNP	G	G	A	rs16853330	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G8344A	p.V2782I	.	.	198	13	122	0	G|0.774;A|0.225	104
XIRP2	129446	bcgsc.ca	37	2	168107155	168107155	+	Missense_Mutation	SNP	G	G	A	rs16853331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G9253A	p.A3085T	.	.	197	14	106	0	G|0.817;A|0.183	104
XIRP2	129446	bcgsc.ca	37	2	168107491	168107491	+	Missense_Mutation	SNP	A	A	G	rs3749004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.A9589G	p.I3197V	.	.	172	11	66	0	A|0.817;G|0.183	104
XIRP2	129446	bcgsc.ca	37	2	168115710	168115710	+	Missense_Mutation	SNP	T	T	G	rs3749006	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_001199143	exon11	c.T2753G	p.V918G	.	.	135	12	65	0	T|0.808;G|0.192	104
XIRP2	129446	bcgsc.ca	37	2	168115769	168115769	+	Missense_Mutation	SNP	G	G	C	rs16853344	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_001199143	exon11	c.G2812C	p.E938Q	.	.	117	9	49	0	G|0.841;C|0.159	104
XIRP2	129446	bcgsc.ca	37	2	168115797	168115797	+	Missense_Mutation	SNP	G	G	C	rs75758327	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_001199143	exon11	c.G2840C	p.R947T	.	.	129	7	48	0	G|0.922;C|0.078	104
XIRP2	129446	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168103304	168103304	+	Missense_Mutation	SNP	G	G	A	rs16853309	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XIRP2	NM_152381	exon9	c.G5402A	p.R1801H	.	.	217	29	97	0	G|0.820;A|0.180	104
XKR3	150165	bcgsc.ca	37	22	17280822	17280822	+	Missense_Mutation	SNP	G	G	A	rs5748648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XKR3	NM_175878	exon3	c.C428T	p.T143M	.	.	884	22	316	0	G|0.881;A|0.119	92
XPC	7508	bcgsc.ca	37	3	14201277	14201277	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XPC	NM_004628	exon8	c.T954C	p.S318S	.	.	150	8	39	0	.	662
XPNPEP2	7512	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	128881685	128881685	+	Missense_Mutation	SNP	C	C	T	rs191887278	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XPNPEP2	NM_003399	exon7	c.C593T	p.P198L	.	.	79	9	42	0	C|1.000;T|0.000	130
XPO4	64328	bcgsc.ca	37	13	21361707	21361707	+	Silent	SNP	C	C	T	rs35518636	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XPO4	NM_022459	exon21	c.G3078A	p.L1026L	.	.	207	7	65	0	C|0.973;T|0.027	272
XPO7	23039	bcgsc.ca	37	8	21833965	21833965	+	Silent	SNP	C	C	T	rs2306641	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XPO7	NM_015024	exon7	c.C696T	p.I232I	.	.	131	12	57	0	C|0.655;T|0.345	273
XPO7	23039	bcgsc.ca	37	8	21846586	21846586	+	Silent	SNP	G	G	C	rs2306646	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XPO7	NM_015024	exon16	c.G1860C	p.L620L	.	.	147	7	60	0	G|0.404;C|0.596	273
XPO7	23039	bcgsc.ca	37	8	21862551	21862551	+	Silent	SNP	A	A	G	rs1058486	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XPO7	NM_015024	exon28	c.A3216G	p.S1072S	.	.	95	9	43	0	A|0.407;G|0.593	273
XRCC4	7518	bcgsc.ca	37	5	82648943	82648943	+	Splice_Site	SNP	G	G	A	rs1805377	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XRCC4	NM_022406	exon8	c.894-1G>A	.	.	.	328	17	122	0	G|0.679;A|0.321	229
XRCC4	7518	bcgsc.ca	37	5	82648977	82648977	+	Silent	SNP	T	T	G	rs1056503	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XRCC4	NM_022406	exon8	c.T927G	p.S309S	.	.	432	17	175	0	T|0.685;G|0.315	229
XRN1	54464	bcgsc.ca	37	3	142122599	142122599	+	Missense_Mutation	SNP	T	T	C	rs35214510	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XRN1	NM_001042604	exon18	c.A2020G	p.S674G	.	.	427	11	184	1	T|0.989;C|0.011	93
XRN2	22803	bcgsc.ca	37	20	21312258	21312258	+	Silent	SNP	T	T	C	rs146130710	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XRN2	NM_012255	exon7	c.T636C	p.I212I	.	.	132	7	79	0	T|0.996;C|0.004	515
XRN2	22803	bcgsc.ca	37	20	21346241	21346241	+	Silent	SNP	C	C	T	rs35050238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XRN2	NM_012255	exon26	c.C2355T	p.D785D	.	.	182	7	101	0	C|0.963;T|0.037	515
XRRA1	143570	hgsc.bcm.edu;bcgsc.ca	37	11	74559426	74559426	+	Missense_Mutation	SNP	T	T	C	rs12291445	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XRRA1	NM_182969	exon15	c.A1438G	p.K480E	.	.	141	9	57	0	T|0.989;C|0.011	68
XYLT1	64131	bcgsc.ca	37	16	17211545	17211545	+	Missense_Mutation	SNP	C	C	T	rs7200466	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XYLT1	NM_022166	exon11	c.G2515A	p.V839I	.	.	183	10	82	0	C|0.934;T|0.066	94
XYLT1	64131	bcgsc.ca	37	16	17211729	17211729	+	Silent	SNP	A	A	G	rs7201590	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XYLT1	NM_022166	exon11	c.T2331C	p.N777N	.	.	288	14	103	0	A|0.934;G|0.066	94
XYLT1	64131	bcgsc.ca	37	16	17353090	17353090	+	Missense_Mutation	SNP	G	G	C	rs113276942	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XYLT1	NM_022166	exon3	c.C668G	p.A223G	.	.	203	10	72	1	G|0.950;C|0.050	94
XYLT1	64131	hgsc.bcm.edu;bcgsc.ca	37	16	17211764	17211764	+	Missense_Mutation	SNP	G	G	C	rs12325439	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XYLT1	NM_022166	exon11	c.C2296G	p.P766A	.	.	242	14	93	0	G|0.998;C|0.002	94
XYLT1	64131	hgsc.bcm.edu;bcgsc.ca	37	16	17353337	17353337	+	Missense_Mutation	SNP	G	G	A	rs74993523	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	XYLT1	NM_022166	exon3	c.C421T	p.R141W	.	.	163	7	59	0	G|0.997;A|0.003	94
YAE1D1	57002	bcgsc.ca	37	7	39610177	39610177	+	Missense_Mutation	SNP	A	A	G	rs6947660	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020192	exon2	c.A202G	p.K68E	.	.	154	6	59	0	A|0.858;G|0.142	.
YME1L1	10730	bcgsc.ca	37	10	27434483	27434483	+	Silent	SNP	G	G	A	rs2274634	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	YME1L1	NM_139312	exon4	c.C376T	p.L126L	.	.	224	11	72	0	G|0.727;A|0.273	91
ZAK	0	bcgsc.ca	37	2	174055646	174055646	+	Silent	SNP	T	T	C	rs35853276	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZAK	NM_133646	exon6	c.T439C	p.L147L	.	.	254	10	109	1	T|0.858;C|0.142	522
ZAN	7455	bcgsc.ca	37	7	100349764	100349764	+	Missense_Mutation	SNP	C	C	T	rs115934396		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZAN	.	.	.	.	.	.	524	23	282	0	C|0.993;T|0.007	142
ZAN	7455	bcgsc.ca	37	7	100350618	100350618	+	Missense_Mutation	SNP	A	A	G	rs200290458		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZAN	.	.	.	.	.	.	602	20	369	0	.	142
ZAN	7455	bcgsc.ca	37	7	100367573	100367573	+	Missense_Mutation	SNP	T	T	C	rs17147735	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZAN	.	.	.	.	.	.	149	11	39	0	T|0.937;C|0.063	142
ZAN	7455	bcgsc.ca	37	7	100385532	100385532	+	Missense_Mutation	SNP	A	A	C	rs60783739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZAN	.	.	.	.	.	.	98	7	41	0	A|0.938;C|0.062	142
ZBED1	9189	bcgsc.ca	37	X	2407927	2407927	+	Silent	SNP	C	C	T	rs145542250	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBED1	NM_001171135	exon2	c.G834A	p.A278A	.	.	152	10	53	0	C|0.980;T|0.020	40
ZBED1	9189	bcgsc.ca;mdanderson.org	37	X	2408545	2408545	+	Silent	SNP	G	G	A	rs151076245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBED1	NM_001171135	exon2	c.C216T	p.P72P	.	.	572	48	205	0	G|0.976;A|0.024	40
ZBED5	58486	bcgsc.ca	37	11	10875200	10875200	+	Silent	SNP	C	C	T	rs2232925	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_021211	exon3	c.G1293A	p.E431E	.	.	140	5	88	0	C|0.889;T|0.111	.
ZBTB12	221527	bcgsc.ca	37	6	31868306	31868306	+	Silent	SNP	C	C	T	rs150122946	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBTB12	NM_181842	exon2	c.G777A	p.P259P	.	.	45	5	32	0	C|0.990;T|0.010	90
ZBTB14	7541	hgsc.bcm.edu;bcgsc.ca	37	18	5291304	5291304	+	Silent	SNP	C	C	T	rs34402690	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001243702	exon4	c.G903A	p.A301A	.	.	208	9	53	0	C|0.981;T|0.019	.
ZBTB40	9923	hgsc.bcm.edu;bcgsc.ca	37	1	22817038	22817038	+	Missense_Mutation	SNP	T	T	G	rs147346219	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBTB40	NM_001083621	exon3	c.T597G	p.N199K	.	.	108	9	38	0	T|0.999;G|0.001	91
ZBTB41	360023	bcgsc.ca	37	1	197168625	197168625	+	Missense_Mutation	SNP	C	C	A	rs10494751	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBTB41	NM_194314	exon1	c.G979T	p.D327Y	.	.	384	10	112	0	C|0.913;A|0.087	92
ZBTB6	10773	bcgsc.ca	37	9	125673457	125673457	+	Silent	SNP	G	G	A	rs148918915		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBTB6	NM_006626	exon2	c.C895T	p.L299L	.	.	94	5	50	0	G|1.000;A|0.000	90
ZBTB6	10773	bcgsc.ca	37	9	125673640	125673640	+	Missense_Mutation	SNP	G	G	C	rs141134308		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBTB6	NM_006626	exon2	c.C712G	p.P238A	.	.	142	9	70	0	G|1.000;C|0.000	90
ZBTB8OS	339487	bcgsc.ca	37	1	33099637	33099637	+	Silent	SNP	A	A	G	rs704878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZBTB8OS	NM_178547	exon3	c.T195C	p.F65F	.	.	303	7	94	0	A|0.832;G|0.168	90
ZC2HC1C	79696	bcgsc.ca	37	14	75537381	75537381	+	Silent	SNP	C	C	T	rs11546525	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	FAM164C,NS,carcinoma,+2	.	NM_024643	exon2	c.C105T	p.Y35Y	.	.	125	9	44	0	C|0.608;T|0.392	.
ZC2HC1C	79696	bcgsc.ca	37	14	75538217	75538217	+	Missense_Mutation	SNP	G	G	T	rs3742778	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_024643	exon2	c.G941T	p.G314V	.	.	76	5	37	0	G|0.478;T|0.522	.
ZC3H13	23091	bcgsc.ca	37	13	46549614	46549614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZC3H13	NM_015070	exon12	c.A2272G	p.R758G	.	.	665	9	201	1	.	92
ZC3H7B	23264	bcgsc.ca	37	22	41751488	41751488	+	Missense_Mutation	SNP	C	C	T	rs35055668	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZC3H7B	NM_017590	exon18	c.C2050T	p.H684Y	.	.	138	5	37	0	C|0.986;T|0.014	90
ZCCHC11	23318	bcgsc.ca	37	1	52896881	52896881	+	Silent	SNP	G	G	A	rs6669945	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC11	NM_001009881	exon28	c.C4515T	p.S1505S	.	.	205	11	98	0	A|0.034;C|0.000;G|0.966;T|0.000	93
ZCCHC11	23318	bcgsc.ca	37	1	52897034	52897034	+	Silent	SNP	T	T	C	rs61732684	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC11	NM_001009881	exon28	c.A4362G	p.Q1454Q	.	.	205	12	82	0	T|0.971;C|0.029	93
ZCCHC16	340595	bcgsc.ca	37	X	111698036	111698036	+	Missense_Mutation	SNP	T	T	C	rs6568050	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC16	NM_001004308	exon3	c.T80C	p.L27P	.	.	215	17	82	0	0|0.015;C|0.551	91
ZCCHC5	203430	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77913569	77913569	+	Missense_Mutation	SNP	G	G	A	rs4077512	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC5	NM_152694	exon2	c.C349T	p.P117S	.	.	127	18	26	0	G|0.872;A|0.128	131
ZCCHC6	79670	hgsc.bcm.edu;bcgsc.ca	37	9	88938596	88938596	+	Missense_Mutation	SNP	C	C	T	rs188666254		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC6	NM_024617	exon13	c.G2069A	p.C690Y	.	.	306	19	184	0	C|0.999;T|0.001	92
ZCCHC7	84186	bcgsc.ca	37	9	37126682	37126682	+	Missense_Mutation	SNP	G	G	A	rs35119826	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC7	NM_032226	exon2	c.G353A	p.G118D	.	.	162	8	108	0	G|0.954;A|0.046	92
ZCCHC7	84186	bcgsc.ca	37	9	37304280	37304280	+	Silent	SNP	T	T	C	rs34242363	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC7	NM_032226	exon4	c.T750C	p.G250G	.	.	173	8	100	0	T|0.953;C|0.047	92
ZCCHC7	84186	bcgsc.ca	37	9	37305603	37305603	+	Silent	SNP	C	C	A	rs35378147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC7	NM_032226	exon5	c.C843A	p.P281P	.	.	258	8	76	0	C|0.953;A|0.047	92
ZCCHC8	55596	bcgsc.ca;mdanderson.org	37	12	122958095	122958095	+	Silent	SNP	C	C	T	rs78310827	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC8	NM_017612	exon14	c.G2073A	p.L691L	.	.	1030	75	303	0	C|0.984;T|0.016	90
ZCCHC9	84240	bcgsc.ca	37	5	80600619	80600619	+	Missense_Mutation	SNP	C	C	G	rs16878594	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCCHC9	NM_001131036	exon2	c.C43G	p.P15A	.	.	202	7	123	0	C|0.916;G|0.084	91
ZCWPW2	152098	bcgsc.ca	37	3	28520417	28520417	+	Missense_Mutation	SNP	T	T	A	rs1563656	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZCWPW2	NM_001040432	exon4	c.T605A	p.L202Q	.	.	439	11	215	0	T|0.574;A|0.426	24
ZDHHC11	79844	bcgsc.ca	37	5	825280	825280	+	Missense_Mutation	SNP	C	C	T	rs1809008	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZDHHC11	NM_024786	exon8	c.G1022A	p.R341Q	.	.	89	7	35	0	C|0.724;T|0.276	92
ZDHHC11	79844	bcgsc.ca	37	5	843766	843766	+	Missense_Mutation	SNP	C	C	T	rs76685897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZDHHC11	NM_024786	exon4	c.G577A	p.V193I	.	.	262	15	118	0	C|0.961;T|0.039	92
ZDHHC11	79844	bcgsc.ca	37	5	843815	843815	+	Silent	SNP	C	C	T	rs71591190	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZDHHC11	NM_024786	exon4	c.G528A	p.S176S	.	.	207	16	104	0	C|0.865;T|0.135	92
ZDHHC11	79844	ucsc.edu;bcgsc.ca	37	5	843723	843723	+	Missense_Mutation	SNP	C	C	A	rs71273553		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZDHHC11	NM_024786	exon4	c.G620T	p.R207M	.	.	173	21	94	0	C|0.500;A|0.500	92
ZDHHC23	254887	bcgsc.ca	37	3	113673125	113673125	+	Missense_Mutation	SNP	A	A	G	rs11921691	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZDHHC23	NM_173570	exon3	c.A740G	p.K247R	.	.	165	9	58	0	A|0.415;G|0.585	92
ZDHHC4	55146	bcgsc.ca	37	7	6621277	6621277	+	Missense_Mutation	SNP	G	G	A	rs11559146	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZDHHC4	NM_018106	exon4	c.G157A	p.V53M	.	.	661	17	245	0	G|0.691;A|0.309	154
ZFAT	57623	bcgsc.ca	37	8	135524797	135524797	+	Silent	SNP	G	G	T	rs3739429	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFAT	NM_020863	exon14	c.C3282A	p.I1094I	.	.	540	27	69	0	G|0.797;T|0.203	90
ZFHX3	463	hgsc.bcm.edu;bcgsc.ca	37	16	72993238	72993238	+	Silent	SNP	G	G	A	rs150043800	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFHX3	NM_006885	exon2	c.C807T	p.F269F	.	.	105	6	63	0	G|0.998;A|0.002	72
ZFP106	64397	bcgsc.ca	37	15	42742464	42742464	+	Missense_Mutation	SNP	A	A	G	rs12101559	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP106	NM_022473	exon2	c.T1937C	p.I646T	.	.	279	10	130	0	A|0.833;G|0.167	515
ZFP112	7771	bcgsc.ca	37	19	44831989	44831989	+	Missense_Mutation	SNP	T	T	G	rs2609881	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon5	c.A2339C	p.E780A	.	.	413	16	134	0	T|0.766;G|0.234	95
ZFP112	7771	bcgsc.ca	37	19	44832684	44832684	+	Silent	SNP	T	T	G	rs2609880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon5	c.A1644C	p.T548T	.	.	271	10	106	0	T|0.377;G|0.623	95
ZFP112	7771	bcgsc.ca	37	19	44832875	44832875	+	Missense_Mutation	SNP	A	A	G	rs2722722	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon5	c.T1453C	p.Y485H	.	.	333	16	108	0	A|0.372;G|0.628	95
ZFP112	7771	bcgsc.ca	37	19	44832992	44832992	+	Missense_Mutation	SNP	C	C	G	rs2722723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon5	c.G1336C	p.E446Q	.	.	225	7	85	0	C|0.375;G|0.625	95
ZFP112	7771	bcgsc.ca	37	19	44833506	44833506	+	Silent	SNP	C	C	T	rs4325673	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon5	c.G822A	p.E274E	.	.	307	16	109	0	C|0.291;T|0.709	95
ZFP112	7771	bcgsc.ca	37	19	44833851	44833851	+	Missense_Mutation	SNP	G	G	C	rs4280359	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon5	c.C477G	p.F159L	.	.	231	13	106	0	G|0.272;C|0.727	95
ZFP112	7771	bcgsc.ca	37	19	44840789	44840789	+	Silent	SNP	T	T	C	rs2571104	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP112	NM_001083335	exon4	c.A225G	p.R75R	.	.	274	7	74	0	T|0.373;C|0.627	95
ZFP64	55734	bcgsc.ca	37	20	50769379	50769379	+	Missense_Mutation	SNP	C	C	T	rs3746414	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP64	NM_018197	exon6	c.G1352A	p.S451N	.	.	128	6	51	0	C|0.848;T|0.152	155
ZFP69B	65243	bcgsc.ca;mdanderson.org	37	1	40922701	40922701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_023070	exon3	c.C298T	p.R100W	.	.	125	9	64	0	.	.
ZFP82	284406	bcgsc.ca	37	19	36884651	36884651	+	Silent	SNP	C	C	A	rs114627398	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP82	NM_133466	exon5	c.G591T	p.P197P	.	.	210	7	90	0	C|0.989;A|0.011	91
ZFP90	146198	bcgsc.ca	37	16	68598007	68598007	+	Silent	SNP	A	A	G	rs1177648	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFP90	NM_133458	exon4	c.A1317G	p.Q439Q	.	.	109	6	59	0	A|0.462;G|0.538	91
ZFPM1	161882	hgsc.bcm.edu	37	16	88598517	88598518	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFPM1	NM_153813	exon7	c.820_821insC	p.A274fs	.	.	175	11	104	0	.	90
ZFR	51663	bcgsc.ca	37	5	32400266	32400266	+	Missense_Mutation	SNP	A	A	G	rs1051489	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFR	NM_016107	exon9	c.T1559C	p.I520T	.	.	265	13	95	0	A|0.734;G|0.266	90
ZFYVE26	23503	bcgsc.ca	37	14	68251991	68251991	+	Missense_Mutation	SNP	G	G	A	rs3742885	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFYVE26	NM_015346	exon19	c.C3308T	p.P1103L	.	.	129	6	53	0	G|0.931;A|0.069	162
ZFYVE26	23503	bcgsc.ca	37	14	68264867	68264867	+	Silent	SNP	A	A	G	rs12891164	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFYVE26	NM_015346	exon11	c.T2112C	p.P704P	.	.	254	11	66	0	A|0.302;G|0.698	162
ZFYVE9	9372	bcgsc.ca	37	1	52705015	52705015	+	Silent	SNP	C	C	A	rs146046897	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZFYVE9	NM_007323	exon4	c.C1926A	p.V642V	.	.	75	4	56	0	C|0.999;T|0.000	230
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39833003	39833003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZHX3	NM_015035	exon3	c.C554A	p.P185Q	.	.	244	77	110	0	.	93
ZKSCAN3	80317	bcgsc.ca	37	6	28331094	28331094	+	Missense_Mutation	SNP	G	G	A	rs17856167	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZKSCAN3	NM_024493	exon4	c.G565A	p.V189M	.	.	117	11	34	0	G|0.921;A|0.079	92
ZKSCAN7	55888	bcgsc.ca	37	3	44612684	44612684	+	Missense_Mutation	SNP	T	T	G	rs113863022	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_018651	exon6	c.T2082G	p.N694K	.	.	82	5	38	0	T|0.999;G|0.001	.
ZKSCAN8	7745	bcgsc.ca	37	6	28116547	28116547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_006298	exon2	c.A362G	p.E121G	.	.	125	7	59	0	.	.
ZMIZ1	57178	bcgsc.ca	37	10	81064950	81064950	+	Silent	SNP	G	G	C	rs34305410	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMIZ1	NM_020338	exon20	c.G2316C	p.L772L	.	.	145	7	55	0	G|0.957;C|0.043	292
ZMYM2	7750	bcgsc.ca	37	13	20579253	20579253	+	Silent	SNP	G	G	A	rs115819790		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYM2	NM_001190964	exon6	c.G1173A	p.V391V	.	.	571	14	212	0	G|0.993;A|0.007	685
ZMYM2	7750	bcgsc.ca	37	13	20608465	20608465	+	Silent	SNP	T	T	C	rs79833154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYM2	NM_001190964	exon12	c.T2040C	p.Y680Y	.	.	130	12	36	0	T|0.911;C|0.089	685
ZMYM3	9203	bcgsc.ca	37	X	70472522	70472522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYM3	NM_005096	exon2	c.T584C	p.V195A	.	.	98	6	34	0	.	131
ZMYM5	9205	bcgsc.ca	37	13	20425948	20425948	+	Missense_Mutation	SNP	T	T	C	rs9579718	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYM5	NM_001039650	exon3	c.A373G	p.I125V	.	.	407	12	152	0	T|0.901;C|0.099	90
ZMYM6	9204	bcgsc.ca	37	1	35452986	35452986	+	Missense_Mutation	SNP	C	C	T	rs16837147	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYM6	NM_007167	exon16	c.G3697A	p.E1233K	.	.	296	11	122	0	C|0.940;T|0.060	93
ZMYM6NB	100506144	bcgsc.ca	37	1	35447598	35447598	+	Missense_Mutation	SNP	C	C	G	rs3892091	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001195156	exon3	c.G412C	p.V138L	.	.	209	10	77	0	C|0.966;G|0.034	.
ZMYND12	84217	bcgsc.ca	37	1	42896441	42896441	+	Missense_Mutation	SNP	C	C	A	rs41301052	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYND12	NM_032257	exon8	c.G1064T	p.S355I	.	.	372	17	113	0	C|0.979;A|0.021	91
ZMYND12	84217	bcgsc.ca	37	1	42898843	42898843	+	Missense_Mutation	SNP	A	A	G	rs1034268	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZMYND12	NM_032257	exon7	c.T946C	p.F316L	.	.	132	7	64	0	A|0.361;G|0.639	91
ZNF107	51427	bcgsc.ca	37	7	64168641	64168641	+	Silent	SNP	A	A	G	rs73363327	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF107	NM_016220	exon7	c.A1959G	p.R653R	.	.	77	7	39	0	A|0.985;G|0.015	69
ZNF12	7559	bcgsc.ca	37	7	6732315	6732315	+	Missense_Mutation	SNP	A	A	C	rs61227179	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF12	NM_016265	exon5	c.T258G	p.D86E	.	.	340	10	128	0	A|0.942;C|0.058	90
ZNF131	7690	bcgsc.ca	37	5	43175103	43175103	+	Silent	SNP	C	C	T	rs35397154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF131	NM_003432	exon8	c.C1638T	p.S546S	.	.	200	9	118	0	C|0.891;T|0.109	90
ZNF143	7702	bcgsc.ca	37	11	9519250	9519250	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF143	NM_003442	exon10	c.T870G	p.T290T	.	.	163	8	81	0	.	90
ZNF154	7710	bcgsc.ca	37	19	58213969	58213969	+	Silent	SNP	T	T	G	rs11878316	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF154	NM_001085384	exon3	c.A348C	p.S116S	.	.	263	11	84	0	T|0.861;G|0.139	90
ZNF155	7711	bcgsc.ca	37	19	44500701	44500701	+	Missense_Mutation	SNP	C	C	T	rs58537897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF155	NM_001260488	exon6	c.C725T	p.P242L	.	.	286	12	110	0	C|0.950;T|0.050	154
ZNF157	7712	bcgsc.ca	37	X	47272531	47272531	+	Silent	SNP	A	A	G	rs7053739	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF157	NM_003446	exon4	c.A1059G	p.T353T	.	.	124	11	34	0	A|0.893;0|0.003	130
ZNF16	7564	bcgsc.ca	37	8	146156247	146156247	+	Silent	SNP	C	C	A	rs3735789	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF16	NM_006958	exon3	c.G1926T	p.S642S	.	.	229	8	34	0	C|0.699;A|0.301	95
ZNF169	169841	bcgsc.ca	37	9	97062295	97062295	+	Missense_Mutation	SNP	C	C	T	rs34433105	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF169	NM_194320	exon5	c.C455T	p.S152L	.	.	103	7	47	0	C|0.930;T|0.070	92
ZNF17	7565	bcgsc.ca	37	19	57931553	57931553	+	Silent	SNP	C	C	T	rs10417533	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF17	NM_006959	exon3	c.C693T	p.S231S	.	.	187	8	63	0	C|0.772;T|0.228	90
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44980850	44980850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF180	NM_013256	exon5	c.G1848T	p.Q616H	.	.	214	84	66	0	.	92
ZNF195	7748	bcgsc.ca	37	11	3382010	3382010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF195	NM_001130520	exon5	c.T382C	p.S128P	.	.	302	10	170	0	.	90
ZNF197	10168	bcgsc.ca	37	3	44684805	44684805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF197	NM_006991	exon6	c.A2183G	p.H728R	.	.	83	5	32	0	.	230
ZNF208	7757	bcgsc.ca	37	19	22156470	22156470	+	Missense_Mutation	SNP	C	C	G	rs7255075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF208	NM_007153	exon4	c.G1366C	p.E456Q	.	.	139	5	55	0	C|0.961;G|0.039	7
ZNF211	10520	hgsc.bcm.edu;bcgsc.ca	37	19	58152182	58152182	+	Missense_Mutation	SNP	G	G	A	rs34897843	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF211	NM_001265597	exon5	c.G523A	p.D175N	.	.	332	21	108	0	G|0.991;A|0.009	92
ZNF217	7764	bcgsc.ca	37	20	52198967	52198967	+	Silent	SNP	A	A	G	rs1326862	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF217	NM_006526	exon1	c.T399C	p.C133C	.	.	589	24	199	1	A|0.921;G|0.079	723
ZNF219	51222	ucsc.edu	37	14	21561104	21561104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF219	NM_001102454	exon3	c.C352T	p.R118C	.	.	49	4	22	0	.	90
ZNF224	7767	bcgsc.ca	37	19	44611162	44611162	+	Silent	SNP	G	G	T	rs13346417	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF224	NM_013398	exon6	c.G849T	p.T283T	.	.	149	8	62	0	G|0.904;T|0.096	92
ZNF224	7767	bcgsc.ca	37	19	44611957	44611957	+	Silent	SNP	T	T	C	rs3746322	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF224	NM_013398	exon6	c.T1644C	p.S548S	.	.	182	11	96	1	T|0.850;C|0.150	92
ZNF225	7768	bcgsc.ca	37	19	44636802	44636802	+	Missense_Mutation	SNP	A	A	T	rs16978738	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_013362	exon5	c.A2035T	p.T679S	.	.	251	9	102	0	A|0.937;T|0.063	.
ZNF226	7769	ucsc.edu;bcgsc.ca	37	19	44680489	44680489	+	Silent	SNP	G	G	A	rs2178342	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001032372	exon6	c.G1074A	p.T358T	.	.	148	15	66	0	G|0.865;A|0.135	.
ZNF227	7770	bcgsc.ca	37	19	44732658	44732658	+	Silent	SNP	C	C	G	rs922063	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF227	NM_182490	exon4	c.C120G	p.L40L	.	.	449	38	155	0	C|0.816;G|0.184	91
ZNF227	7770	bcgsc.ca	37	19	44739031	44739031	+	Missense_Mutation	SNP	G	G	A	rs73553206	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF227	NM_182490	exon6	c.G448A	p.E150K	.	.	318	10	138	0	G|0.986;A|0.014	91
ZNF229	7772	bcgsc.ca	37	19	44933706	44933706	+	Missense_Mutation	SNP	C	C	T	rs57014690	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF229	NM_014518	exon6	c.G1250A	p.S417N	.	.	236	15	77	0	C|0.848;T|0.152	94
ZNF229	7772	bcgsc.ca	37	19	44934653	44934653	+	Silent	SNP	T	T	C	rs8113370	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF229	NM_014518	exon6	c.A303G	p.K101K	.	.	136	6	48	0	T|0.846;C|0.154	94
ZNF230	7773	bcgsc.ca	37	19	44515352	44515352	+	Silent	SNP	T	T	G	rs1060880	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF230	NM_006300	exon5	c.T1161G	p.T387T	.	.	236	9	118	1	T|0.801;G|0.199	90
ZNF233	353355	bcgsc.ca	37	19	44778797	44778797	+	Missense_Mutation	SNP	T	T	A	rs2884015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF233	NM_001207005	exon5	c.T1984A	p.L662M	.	.	87	6	45	0	T|0.880;A|0.120	92
ZNF233	353355	ucsc.edu;bcgsc.ca	37	19	44778405	44778405	+	Missense_Mutation	SNP	A	A	C	rs1233428	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF233	NM_001207005	exon5	c.A1592C	p.K531T	.	.	116	13	60	0	A|0.273;C|0.727	92
ZNF235	9310	bcgsc.ca	37	19	44792967	44792967	+	Silent	SNP	T	T	C	rs61743788	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF235	NM_004234	exon5	c.A621G	p.L207L	.	.	270	8	86	0	T|0.984;C|0.016	137
ZNF235	9310	bcgsc.ca	37	19	44792969	44792969	+	Silent	SNP	G	G	A	rs2609908	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF235	NM_004234	exon5	c.C619T	p.L207L	.	.	269	22	83	1	G|0.286;A|0.714	137
ZNF239	8187	bcgsc.ca	37	10	44053042	44053042	+	Silent	SNP	T	T	C	rs74138142		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF239	NM_001099284	exon3	c.A486G	p.S162S	.	.	147	11	69	0	T|0.986;C|0.014	90
ZNF257	113835	bcgsc.ca	37	19	22256347	22256347	+	Silent	SNP	G	G	A	rs10423157	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF257	NM_033468	exon3	c.G207A	p.E69E	.	.	155	5	57	0	G|0.927;A|0.073	90
ZNF257	113835	bcgsc.ca	37	19	22256358	22256358	+	Missense_Mutation	SNP	A	A	G	rs73930397	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF257	NM_033468	exon3	c.A218G	p.K73R	.	.	151	5	56	0	A|0.967;G|0.033	90
ZNF257	113835	bcgsc.ca	37	19	22271246	22271246	+	Missense_Mutation	SNP	G	G	A	rs143566184		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF257	NM_033468	exon4	c.G694A	p.E232K	.	.	174	6	71	0	G|0.997;A|0.003	90
ZNF280B	140883	bcgsc.ca	37	22	22842788	22842788	+	Silent	SNP	G	G	A	rs151119614	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF280B	NM_080764	exon4	c.C936T	p.C312C	.	.	229	9	68	0	G|0.989;A|0.011	70
ZNF280C	55609	ucsc.edu;bcgsc.ca	37	X	129349295	129349295	+	Silent	SNP	T	T	G	rs209238	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF280C	NM_017666	exon15	c.A1851C	p.G617G	.	.	129	14	65	0	0|0.003;G|0.509	132
ZNF285	26974	bcgsc.ca	37	19	44890841	44890841	+	Silent	SNP	G	G	A	rs59953894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF285	NM_152354	exon4	c.C1566T	p.S522S	.	.	339	8	118	0	G|0.962;A|0.038	94
ZNF286A	57335	bcgsc.ca	37	17	15611495	15611495	+	Missense_Mutation	SNP	T	T	C	rs3760299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF286A	NM_020652	exon5	c.T268C	p.Y90H	.	.	216	14	73	0	T|0.541;C|0.459	90
ZNF286B	729288	bcgsc.ca	37	17	18566386	18566386	+	Missense_Mutation	SNP	G	G	A	rs143643706	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145045	exon5	c.C433T	p.R145W	.	.	580	18	232	0	G|0.945;A|0.055	.
ZNF287	57336	bcgsc.ca	37	17	16455476	16455476	+	Silent	SNP	G	G	A	rs149309490	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF287	NM_020653	exon6	c.C1980T	p.G660G	.	.	501	19	154	1	G|0.999;A|0.001	90
ZNF287	57336	bcgsc.ca	37	17	16456614	16456614	+	Missense_Mutation	SNP	T	T	G	rs7224723	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF287	NM_020653	exon6	c.A842C	p.K281T	.	.	294	12	92	0	T|0.859;G|0.141	90
ZNF292	23036	bcgsc.ca	37	6	87969341	87969341	+	Silent	SNP	G	G	A	rs16878809	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF292	NM_015021	exon8	c.G5994A	p.P1998P	.	.	153	6	77	0	G|0.910;A|0.090	72
ZNF30	90075	bcgsc.ca	37	19	35435069	35435069	+	Missense_Mutation	SNP	A	A	G	rs765746	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF30	NM_001099438	exon5	c.A1202G	p.Y401C	.	.	118	10	52	0	A|0.758;G|0.242	24
ZNF30	90075	hgsc.bcm.edu;bcgsc.ca	37	19	35434438	35434438	+	Missense_Mutation	SNP	G	G	A	rs8100497	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF30	NM_001099438	exon5	c.G571A	p.A191T	.	.	169	12	77	0	G|0.985;A|0.015	24
ZNF311	282890	bcgsc.ca	37	6	28964086	28964086	+	Silent	SNP	G	G	A	rs61751894	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF311	NM_001010877	exon7	c.C693T	p.N231N	.	.	237	9	109	0	G|0.919;A|0.081	22
ZNF318	24149	bcgsc.ca	37	6	43305790	43305790	+	Silent	SNP	T	T	C	rs34761878	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF318	NM_014345	exon10	c.A5946G	p.L1982L	.	.	690	20	210	1	T|0.993;C|0.007	157
ZNF331	55422	bcgsc.ca	37	19	54080279	54080279	+	Silent	SNP	T	T	C	rs1351	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF331	NM_001253801	exon5	c.T465C	p.G155G	.	.	169	9	56	0	T|0.881;C|0.119	663
ZNF334	55713	bcgsc.ca	37	20	45130453	45130453	+	Missense_Mutation	SNP	T	T	C	rs142810617	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF334	NM_018102	exon5	c.A1525G	p.R509G	.	.	300	8	79	0	T|0.999;C|0.001	92
ZNF334	55713	bcgsc.ca	37	20	45131596	45131596	+	Missense_Mutation	SNP	G	G	C	rs147941756	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF334	NM_018102	exon5	c.C382G	p.P128A	.	.	652	22	273	0	G|0.992;C|0.008	92
ZNF337	26152	ucsc.edu;bcgsc.ca	37	20	25666737	25666737	+	Missense_Mutation	SNP	C	C	T	rs926487	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF337	NM_015655	exon3	c.G49A	p.V17I	.	.	82	8	33	0	C|0.838;T|0.162	90
ZNF343	79175	bcgsc.ca	37	20	2465100	2465100	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF343	NM_024325	exon6	c.A507G	p.E169E	.	.	307	7	123	0	.	92
ZNF354A	6940	bcgsc.ca	37	5	178140090	178140090	+	Silent	SNP	C	C	T	rs1132336	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF354A	NM_005649	exon5	c.G789A	p.T263T	.	.	179	6	108	0	C|0.762;T|0.238	93
ZNF354B	117608	bcgsc.ca	37	5	178293265	178293265	+	Silent	SNP	C	C	T	rs1132331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF354B	NM_058230	exon3	c.C54T	p.D18D	.	.	324	10	134	0	C|0.957;T|0.043	92
ZNF354B	117608	bcgsc.ca	37	5	178294060	178294060	+	Missense_Mutation	SNP	G	G	A	rs11955074	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF354B	NM_058230	exon4	c.G244A	p.V82I	.	.	184	10	85	0	G|0.854;A|0.146	92
ZNF366	167465	bcgsc.ca	37	5	71756355	71756355	+	Silent	SNP	G	G	A	rs35721849	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF366	NM_152625	exon2	c.C969T	p.H323H	.	.	153	10	58	0	G|0.950;A|0.050	91
ZNF366	167465	bcgsc.ca	37	5	71757037	71757037	+	Missense_Mutation	SNP	G	G	A	rs6887708	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF366	NM_152625	exon2	c.C287T	p.T96I	.	.	574	32	239	0	G|0.985;A|0.015	91
ZNF37BP	100129482	bcgsc.ca	37	10	43016411	43016411	+	RNA	SNP	C	C	T	rs7092920	bycluster;byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	149	8	59	0	C|0.984;T|0.016	.
ZNF385C	201181	bcgsc.ca	37	17	40189830	40189830	+	Silent	SNP	C	C	T	rs60110245		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF385C	NM_001242704	exon2	c.G87A	p.P29P	.	.	178	8	82	0	C|0.898;T|0.102	22
ZNF385C	201181	hgsc.bcm.edu;bcgsc.ca	37	17	40183707	40183707	+	Silent	SNP	G	G	C	rs75049227		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF385C	NM_001242704	exon4	c.C369G	p.A123A	.	.	600	24	149	0	G|0.994;C|0.006	22
ZNF385D	79750	bcgsc.ca	37	3	21552384	21552384	+	Silent	SNP	G	G	T	rs200837695		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF385D	NM_024697	exon4	c.C408A	p.T136T	.	.	761	32	310	1	G|0.999;T|0.000	156
ZNF385D	79750	hgsc.bcm.edu;bcgsc.ca	37	3	21706469	21706469	+	Missense_Mutation	SNP	G	G	T	rs114302168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF385D	NM_024697	exon2	c.C74A	p.P25H	.	.	137	8	49	0	G|0.973;T|0.027	156
ZNF396	252884	bcgsc.ca	37	18	32949555	32949555	+	Missense_Mutation	SNP	T	T	A	rs9963473	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF396	NM_145756	exon4	c.A632T	p.H211L	.	.	317	11	121	0	T|0.949;A|0.051	90
ZNF397	84307	bcgsc.ca	37	18	32823139	32823139	+	Silent	SNP	A	A	G	rs35852269	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF397	NM_032347	exon3	c.A438G	p.P146P	.	.	98	7	36	0	A|0.989;G|0.011	90
ZNF407	55628	bcgsc.ca	37	18	72344509	72344509	+	Missense_Mutation	SNP	G	G	A	rs7227263	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF407	NM_001146190	exon1	c.G1534A	p.G512R	.	.	99	9	49	0	G|0.910;A|0.090	92
ZNF407	55628	bcgsc.ca	37	18	72344553	72344553	+	Silent	SNP	G	G	A	rs7227391	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF407	NM_001146190	exon1	c.G1578A	p.T526T	.	.	165	13	79	0	G|0.907;A|0.093	92
ZNF407	55628	bcgsc.ca	37	18	72345890	72345890	+	Missense_Mutation	SNP	A	A	C	rs948615	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF407	NM_001146190	exon1	c.A2915C	p.N972T	.	.	264	9	89	0	A|0.797;C|0.203	92
ZNF408	79797	bcgsc.ca	37	11	46724289	46724289	+	Silent	SNP	C	C	G	rs4297419	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF408	NM_024741	exon3	c.C366G	p.A122A	.	.	564	48	345	0	C|0.685;G|0.315	90
ZNF410	57862	bcgsc.ca	37	14	74388908	74388908	+	Silent	SNP	T	T	C	rs1127392	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF410	NM_001242924	exon11	c.T1320C	p.D440D	.	.	240	8	70	0	A|0.000;C|0.298;T|0.702	91
ZNF415	55786	bcgsc.ca	37	19	53612055	53612055	+	Missense_Mutation	SNP	T	T	C	rs10410030	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF415	NM_018355	exon4	c.A1243G	p.N415D	.	.	129	5	55	0	T|0.842;C|0.158	91
ZNF415	55786	bcgsc.ca	37	19	53612609	53612609	+	Missense_Mutation	SNP	T	T	C	rs140509988	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF415	NM_018355	exon4	c.A689G	p.H230R	.	.	397	13	116	1	T|0.999;C|0.001	91
ZNF417	147687	bcgsc.ca	37	19	58420716	58420716	+	Missense_Mutation	SNP	G	G	C	rs10416686	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF417	NM_152475	exon3	c.C930G	p.S310R	.	.	396	11	150	0	G|0.972;C|0.028	90
ZNF41	7592	bcgsc.ca	37	X	47308509	47308509	+	Missense_Mutation	SNP	A	A	C	rs34301930	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF41	NM_007130	exon5	c.T660G	p.N220K	.	.	281	21	75	0	A|0.966;C|0.034	133
ZNF425	155054	ucsc.edu;bcgsc.ca	37	7	148801378	148801378	+	Missense_Mutation	SNP	C	C	T	rs61753417	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF425	NM_001001661	exon4	c.G1585A	p.A529T	.	.	95	13	41	0	C|0.943;T|0.057	136
ZNF426	79088	bcgsc.ca	37	19	9646898	9646898	+	Missense_Mutation	SNP	G	G	A	rs2042200	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF426	NM_024106	exon3	c.C11T	p.A4V	.	.	118	7	50	0	G|0.820;A|0.180	91
ZNF430	80264	bcgsc.ca	37	19	21239660	21239660	+	Silent	SNP	T	T	C	rs116573353	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF430	NM_025189	exon5	c.T546C	p.Y182Y	.	.	213	8	73	0	T|0.993;C|0.007	516
ZNF430	80264	bcgsc.ca	37	19	21240706	21240706	+	Missense_Mutation	SNP	A	A	G	rs61744901	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF430	NM_025189	exon5	c.A1592G	p.H531R	.	.	58	4	43	0	A|0.993;G|0.007	516
ZNF438	220929	bcgsc.ca	37	10	31146615	31146615	+	Missense_Mutation	SNP	T	T	C	rs16932010	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF438	NM_001143770	exon7	c.A1G	p.M1V	.	.	157	8	53	0	T|0.812;C|0.188	154
ZNF442	79973	bcgsc.ca	37	19	12461135	12461135	+	Missense_Mutation	SNP	C	C	T	rs11085808	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF442	NM_030824	exon6	c.G1264A	p.G422R	.	.	179	6	70	1	C|0.951;T|0.049	587
ZNF442	79973	bcgsc.ca	37	19	12461212	12461212	+	Missense_Mutation	SNP	A	A	G	rs11085809	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF442	NM_030824	exon6	c.T1187C	p.M396T	.	.	291	8	81	0	A|0.951;G|0.049	587
ZNF442	79973	bcgsc.ca	37	19	12461859	12461859	+	Silent	SNP	G	G	C	rs61737005	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF442	NM_030824	exon6	c.C540G	p.R180R	.	.	283	10	140	0	G|0.955;C|0.045	587
ZNF443	10224	hgsc.bcm.edu;bcgsc.ca	37	19	12541497	12541497	+	Missense_Mutation	SNP	T	T	C	rs115487665	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF443	NM_005815	exon4	c.A1489G	p.T497A	.	.	171	8	89	0	T|0.994;C|0.006	91
ZNF44	51710	bcgsc.ca	37	19	12384580	12384580	+	Missense_Mutation	SNP	T	T	C	rs11879168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF44	NM_001164276	exon5	c.A634G	p.T212A	.	.	231	9	110	0	T|0.801;C|0.199	23
ZNF446	55663	bcgsc.ca	37	19	58989495	58989495	+	Missense_Mutation	SNP	A	A	C	rs893185	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF446	NM_017908	exon4	c.A574C	p.N192H	.	.	190	8	47	0	T|0.116;G|0.096	91
ZNF449	203523	bcgsc.ca	37	X	134483151	134483151	+	Silent	SNP	C	C	T	rs2286479	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF449	NM_152695	exon3	c.C471T	p.A157A	.	.	87	7	31	0	0|0.003;T|0.112	132
ZNF462	58499	bcgsc.ca	37	9	109686634	109686634	+	Silent	SNP	C	C	A	rs140067056	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF462	NM_021224	exon3	c.C441A	p.S147S	.	.	131	5	67	0	C|0.997;A|0.003	95
ZNF462	58499	bcgsc.ca	37	9	109773145	109773145	+	Missense_Mutation	SNP	A	A	T	rs10217192	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF462	NM_021224	exon13	c.A7355T	p.H2452L	.	.	116	5	60	0	A|0.879;T|0.121	95
ZNF462	58499	hgsc.bcm.edu;bcgsc.ca	37	9	109687639	109687639	+	Silent	SNP	G	G	A	rs73522975	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF462	NM_021224	exon3	c.G1446A	p.S482S	.	.	164	9	49	0	G|0.990;A|0.010	95
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109691676	109691676	+	Missense_Mutation	SNP	A	A	G	rs3814538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF462	NM_021224	exon3	c.A5483G	p.N1828S	.	.	55	8	32	0	G|0.519;N|0.001	95
ZNF468	90333	bcgsc.ca	37	19	53344701	53344701	+	Silent	SNP	A	A	G	rs10420793	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF468	NM_001008801	exon4	c.T846C	p.H282H	.	.	151	5	56	0	A|0.649;G|0.351	92
ZNF468	90333	bcgsc.ca	37	19	53344919	53344919	+	Missense_Mutation	SNP	T	T	G	rs58239286	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF468	NM_001008801	exon4	c.A628C	p.M210L	.	.	299	13	153	1	T|0.795;G|0.205	92
ZNF469	84627	bcgsc.ca	37	16	88505287	88505287	+	Silent	SNP	G	G	C	rs150233193	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001127464	exon2	c.G11325C	p.G3775G	.	.	167	11	142	0	G|0.978;C|0.022	.
ZNF470	388566	bcgsc.ca	37	19	57089568	57089568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF470	NM_001001668	exon6	c.A1771G	p.R591G	.	.	118	5	53	0	.	92
ZNF470	388566	bcgsc.ca	37	19	57089835	57089835	+	Missense_Mutation	SNP	A	A	G	rs34863160	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF470	NM_001001668	exon6	c.A2038G	p.K680E	.	.	129	5	43	0	A|0.985;G|0.015	92
ZNF474	133923	bcgsc.ca	37	5	121487954	121487954	+	Missense_Mutation	SNP	G	G	A	rs116158782	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF474	NM_207317	exon2	c.G269A	p.R90H	.	.	164	12	106	0	G|0.988;A|0.012	90
ZNF474	133923	bcgsc.ca	37	5	121488280	121488280	+	Missense_Mutation	SNP	T	T	C	rs79886184	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF474	NM_207317	exon2	c.T595C	p.S199P	.	.	126	5	54	0	T|0.988;C|0.012	90
ZNF492	57615	bcgsc.ca	37	19	22847084	22847084	+	Missense_Mutation	SNP	G	G	T	rs71236901	bycluster;byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF492	NM_020855	exon4	c.G613T	p.A205S	.	.	1159	64	359	1	G|0.500;T|0.500	68
ZNF492	57615	bcgsc.ca	37	19	22847412	22847412	+	Missense_Mutation	SNP	G	G	A	rs4100182		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF492	NM_020855	exon4	c.G941A	p.C314Y	.	.	138	14	73	0	.	68
ZNF492	57615	bcgsc.ca	37	19	22847477	22847477	+	Missense_Mutation	SNP	C	C	A	rs74174088	alternate_allele	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF492	NM_020855	exon4	c.C1006A	p.P336T	.	.	225	11	105	0	CC|0.500;TT|0.500	68
ZNF492	57615	bcgsc.ca;mdanderson.org	37	19	22847072	22847072	+	Missense_Mutation	SNP	G	G	C	rs71236900	bycluster;byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF492	NM_020855	exon4	c.G601C	p.E201Q	.	.	1138	66	346	0	G|0.500;C|0.500	68
ZNF497	162968	bcgsc.ca	37	19	58868480	58868480	+	Missense_Mutation	SNP	G	G	T	rs12609654	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF497	NM_001207009	exon2	c.C522A	p.H174Q	.	.	203	14	88	0	G|0.561;T|0.439	90
ZNF518B	85460	bcgsc.ca	37	4	10447679	10447679	+	Missense_Mutation	SNP	C	C	T	rs10007352	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF518B	NM_053042	exon3	c.G274A	p.G92S	.	.	152	5	78	0	C|0.906;T|0.094	72
ZNF529	57711	bcgsc.ca	37	19	37038092	37038092	+	Silent	SNP	T	T	C	rs2278168	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF529	NM_001145649	exon6	c.A1368G	p.G456G	.	.	200	12	75	0	T|0.774;C|0.226	67
ZNF530	348327	bcgsc.ca	37	19	58117083	58117083	+	Missense_Mutation	SNP	A	A	G	rs9677004	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF530	NM_020880	exon3	c.A190G	p.T64A	.	.	149	11	46	0	A|0.716;G|0.284	90
ZNF532	55205	hgsc.bcm.edu;bcgsc.ca	37	18	56651544	56651544	+	Missense_Mutation	SNP	G	G	A	rs143994649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF532	NM_018181	exon11	c.G3752A	p.S1251N	.	.	225	12	72	0	G|0.999;A|0.001	154
ZNF534	147658	bcgsc.ca	37	19	52941335	52941335	+	Missense_Mutation	SNP	C	C	T	rs16983815	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF534	NM_001143939	exon4	c.C661T	p.H221Y	.	.	151	7	75	0	C|0.962;T|0.038	68
ZNF534	147658	bcgsc.ca	37	19	52942535	52942535	+	Missense_Mutation	SNP	T	T	G	rs138409078		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF534	NM_001143939	exon4	c.T1861G	p.C621G	.	.	116	5	65	0	T|0.974;G|0.026	68
ZNF540	163255	bcgsc.ca	37	19	38103878	38103878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF540	NM_152606	exon5	c.T1697C	p.F566S	.	.	96	4	58	0	.	153
ZNF543	125919	bcgsc.ca	37	19	57840547	57840547	+	Missense_Mutation	SNP	A	A	G	rs10410649	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF543	NM_213598	exon4	c.A1717G	p.M573V	.	.	126	7	51	0	A|0.737;G|0.263	92
ZNF558	148156	bcgsc.ca	37	19	8922441	8922441	+	Missense_Mutation	SNP	A	A	G	rs61742909	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF558	NM_144693	exon6	c.T725C	p.F242S	.	.	174	7	93	0	A|0.994;G|0.006	90
ZNF560	147741	bcgsc.ca	37	19	9577734	9577734	+	Missense_Mutation	SNP	T	T	C	rs10416098	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF560	NM_152476	exon10	c.A1889G	p.Y630C	.	.	161	6	61	0	T|0.950;C|0.050	158
ZNF560	147741	bcgsc.ca	37	19	9578459	9578459	+	Silent	SNP	C	C	T	rs16980696	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF560	NM_152476	exon10	c.G1164A	p.P388P	.	.	268	8	123	0	C|0.951;T|0.049	158
ZNF561	93134	bcgsc.ca	37	19	9721401	9721401	+	Silent	SNP	A	A	T	rs28445940	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF561	NM_152289	exon6	c.T936A	p.T312T	.	.	238	9	97	0	A|0.733;T|0.267	91
ZNF565	147929	bcgsc.ca	37	19	36674305	36674305	+	Missense_Mutation	SNP	A	A	G	rs4805162	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF565	NM_001042474	exon5	c.T563C	p.I188T	.	.	168	14	51	0	A|0.373;G|0.627	92
ZNF565	147929	bcgsc.ca	37	19	36674349	36674349	+	Silent	SNP	C	C	T	rs61743957	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF565	NM_001042474	exon5	c.G519A	p.G173G	.	.	242	12	69	0	C|0.969;T|0.031	92
ZNF567	163081	bcgsc.ca	37	19	37210529	37210529	+	Silent	SNP	A	A	G	rs3108200	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF567	NM_152603	exon4	c.A810G	p.R270R	.	.	178	12	80	0	A|0.701;G|0.299	90
ZNF57	126295	bcgsc.ca	37	19	2917287	2917287	+	Missense_Mutation	SNP	C	C	A	rs2288958	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF57	NM_173480	exon4	c.C668A	p.T223N	.	.	60	4	38	0	C|0.581;A|0.419	71
ZNF587	84914	bcgsc.ca	37	19	58370298	58370298	+	Missense_Mutation	SNP	G	G	A	rs3826671	bycluster	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF587	NM_032828	exon3	c.G518A	p.R173H	.	.	1181	113	518	45	G|0.500;A|0.500	90
ZNF587	84914	bcgsc.ca	37	19	58371175	58371175	+	Silent	SNP	G	G	A	rs61735222	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF587	NM_032828	exon3	c.G1395A	p.A465A	.	.	353	19	132	0	G|0.968;A|0.032	90
ZNF587B	100293516	bcgsc.ca	37	19	58352522	58352522	+	Silent	SNP	G	G	A	rs12981244	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001204818	exon3	c.G480A	p.R160R	.	.	678	51	252	0	G|0.431;A|0.569	.
ZNF587B	100293516	bcgsc.ca	37	19	58352754	58352754	+	Missense_Mutation	SNP	C	C	G	rs113335262	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001204818	exon3	c.C712G	p.R238G	.	.	267	12	101	0	C|0.989;G|0.011	.
ZNF596	169270	bcgsc.ca	37	8	195990	195990	+	Silent	SNP	T	T	C	rs73521331	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF596	NM_173539	exon6	c.T1143C	p.H381H	.	.	116	5	58	0	T|0.983;C|0.017	90
ZNF599	148103	bcgsc.ca	37	19	35249975	35249975	+	Silent	SNP	C	C	T	rs61730325	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF599	NM_001007248	exon4	c.G1731A	p.S577S	.	.	380	15	183	0	C|0.988;T|0.012	92
ZNF599	148103	bcgsc.ca	37	19	35258224	35258224	+	Missense_Mutation	SNP	C	C	T	rs74834692	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF599	NM_001007248	exon3	c.G238A	p.A80T	.	.	124	5	42	0	C|0.980;T|0.020	92
ZNF600	162966	bcgsc.ca	37	19	53270623	53270623	+	Missense_Mutation	SNP	G	G	C	rs79890896	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF600	NM_198457	exon3	c.C386G	p.P129R	.	.	260	12	125	0	G|0.938;C|0.062	90
ZNF607	84775	hgsc.bcm.edu;bcgsc.ca	37	19	38190665	38190665	+	Missense_Mutation	SNP	A	A	G	rs35735839	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF607	NM_032689	exon5	c.T367C	p.F123L	.	.	303	13	95	0	A|0.987;G|0.013	90
ZNF608	57507	bcgsc.ca	37	5	123976967	123976967	+	Silent	SNP	C	C	T	rs7703447	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF608	NM_020747	exon7	c.G4428A	p.P1476P	.	.	151	6	47	0	C|0.880;T|0.120	229
ZNF608	57507	bcgsc.ca	37	5	123983915	123983915	+	Missense_Mutation	SNP	G	G	T	rs6862252	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF608	NM_020747	exon4	c.C2162A	p.T721N	.	.	182	9	142	0	G|0.405;N|0.001	229
ZNF613	79898	bcgsc.ca	37	19	52448669	52448669	+	Silent	SNP	G	G	C	rs11880193	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF613	NM_001031721	exon6	c.G1533C	p.P511P	.	.	218	9	92	0	G|0.841;C|0.159	91
ZNF614	80110	bcgsc.ca	37	19	52520518	52520518	+	Silent	SNP	T	T	C	rs73934728	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF614	NM_025040	exon5	c.A333G	p.R111R	.	.	307	9	97	0	T|0.949;C|0.051	95
ZNF616	90317	bcgsc.ca	37	19	52619065	52619065	+	Missense_Mutation	SNP	T	T	C	rs3764537	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF616	NM_178523	exon4	c.A1352G	p.H451R	.	.	353	28	121	0	T|0.700;C|0.300	90
ZNF623	9831	bcgsc.ca	37	8	144733119	144733119	+	Silent	SNP	G	G	A	rs61744877	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF623	NM_014789	exon1	c.G1077A	p.T359T	.	.	197	7	38	0	G|0.957;A|0.043	90
ZNF625	90589	bcgsc.ca	37	19	12256912	12256912	+	Missense_Mutation	SNP	C	C	T	rs7258368	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF625	NM_145233	exon4	c.G319A	p.V107M	.	.	291	9	92	1	C|0.818;T|0.182	90
ZNF626	199777	bcgsc.ca	37	19	20808414	20808414	+	Missense_Mutation	SNP	C	C	T	rs8110802	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF626	NM_001076675	exon4	c.G269A	p.S90N	.	.	248	11	89	1	C|0.961;T|0.039	515
ZNF626	199777	bcgsc.ca	37	19	20808418	20808418	+	Missense_Mutation	SNP	G	G	C	rs8111015	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF626	NM_001076675	exon4	c.C265G	p.Q89E	.	.	255	12	91	0	G|0.944;C|0.056	515
ZNF630	57232	bcgsc.ca	37	X	47918160	47918160	+	Silent	SNP	A	A	G	rs61736415	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF630	NM_001037735	exon5	c.T1671C	p.H557H	.	.	67	4	28	0	A|0.987;G|0.013	131
ZNF644	84146	hgsc.bcm.edu;bcgsc.ca	37	1	91406186	91406186	+	Missense_Mutation	SNP	G	G	A	rs143932357	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF644	NM_201269	exon3	c.C725T	p.T242M	.	.	162	10	91	0	G|0.997;A|0.003	155
ZNF645	158506	bcgsc.ca	37	X	22291606	22291606	+	Missense_Mutation	SNP	C	C	A	rs5951426	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF645	NM_152577	exon1	c.C498A	p.D166E	.	.	122	9	64	0	0|0.023;T|0.070	131
ZNF646	9726	bcgsc.ca	37	16	31091209	31091209	+	Silent	SNP	T	T	C	rs3751855	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF646	NM_014699	exon2	c.T3564C	p.T1188T	.	.	99	6	51	0	A|0.000;C|0.415;T|0.584	153
ZNF649	65251	bcgsc.ca	37	19	52395086	52395086	+	Silent	SNP	C	C	T	rs140908786	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF649	NM_023074	exon5	c.G303A	p.T101T	.	.	703	32	223	2	C|1.000;T|0.000	92
ZNF652	22834	bcgsc.ca	37	17	47390136	47390136	+	Silent	SNP	A	A	G	rs11654557	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF652	NM_001145365	exon3	c.T972C	p.Y324Y	.	.	184	9	61	0	A|0.941;G|0.059	91
ZNF653	115950	bcgsc.ca	37	19	11598483	11598483	+	Silent	SNP	T	T	C	rs311805	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF653	NM_138783	exon4	c.A795G	p.P265P	.	.	208	15	51	0	T|0.730;C|0.270	90
ZNF667	63934	bcgsc.ca	37	19	56953272	56953272	+	Silent	SNP	G	G	A	rs3760850	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF667	NM_022103	exon5	c.C1092T	p.D364D	.	.	288	13	144	0	G|0.875;A|0.125	91
ZNF669	79862	hgsc.bcm.edu;bcgsc.ca	37	1	247265410	247265410	+	Silent	SNP	C	C	T	rs61730465	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF669	NM_024804	exon2	c.G267A	p.S89S	.	.	266	12	96	0	C|0.992;T|0.008	90
ZNF679	168417	bcgsc.ca	37	7	63726645	63726645	+	Missense_Mutation	SNP	T	T	C	rs1830035	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF679	NM_153363	exon5	c.T634C	p.Y212H	.	.	183	13	105	0	T|0.899;C|0.101	1
ZNF679	168417	bcgsc.ca	37	7	63726678	63726678	+	Missense_Mutation	SNP	T	T	A	rs1830036	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF679	NM_153363	exon5	c.T667A	p.C223S	.	.	142	6	93	0	T|0.899;A|0.101	1
ZNF682	91120	bcgsc.ca	37	19	20133846	20133846	+	Missense_Mutation	SNP	C	C	T	rs7255165	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF682	NM_033196	exon3	c.G193A	p.V65M	.	.	316	15	97	0	C|0.802;T|0.198	92
ZNF683	257101	bcgsc.ca	37	1	26688181	26688181	+	Silent	SNP	G	G	C	rs11583897	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_173574	exon6	c.C1476G	p.A492A	.	.	80	6	37	0	G|0.907;C|0.093	.
ZNF695	57116	bcgsc.ca	37	1	247151035	247151035	+	Missense_Mutation	SNP	T	T	G	rs2642993	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_020394	exon4	c.A782C	p.N261T	.	.	250	7	98	0	T|0.936;G|0.064	.
ZNF699	374879	bcgsc.ca	37	19	9406282	9406282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF699	NM_198535	exon5	c.T1798C	p.S600P	.	.	108	5	38	0	.	68
ZNF700	90592	bcgsc.ca	37	19	12058336	12058336	+	Silent	SNP	A	A	G	rs376075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF700	NM_001271848	exon3	c.A207G	p.K69K	.	.	653	27	237	0	A|0.947;G|0.053	90
ZNF701	55762	bcgsc.ca	37	19	53077411	53077411	+	Missense_Mutation	SNP	T	T	C	rs162832	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF701	NM_001172655	exon3	c.T209C	p.L70P	.	.	85	4	51	0	T|0.261;C|0.739	90
ZNF701	55762	bcgsc.ca	37	19	53085659	53085659	+	Missense_Mutation	SNP	C	C	T	rs366793	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF701	NM_001172655	exon5	c.C545T	p.T182I	.	.	440	24	153	0	C|0.310;T|0.690	90
ZNF705G	100131980	bcgsc.ca	37	8	7215836	7215836	+	Missense_Mutation	SNP	G	G	A	rs146117075	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001164457	exon5	c.C565T	p.R189W	.	.	155	10	141	0	G|0.992;A|0.008	.
ZNF70	7621	bcgsc.ca	37	22	24086107	24086107	+	Silent	SNP	A	A	G	rs5759985	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF70	NM_021916	exon2	c.T1221C	p.I407I	.	.	248	15	64	0	A|0.481;G|0.519	92
ZNF708	7562	bcgsc.ca	37	19	21476361	21476361	+	Silent	SNP	A	A	G	rs73535992	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF708	NM_021269	exon4	c.T1407C	p.I469I	.	.	79	6	28	0	A|0.991;G|0.009	516
ZNF716	441234	bcgsc.ca;mdanderson.org	37	7	57522210	57522210	+	Silent	SNP	G	G	A	rs116306894	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF716	NM_001159279	exon2	c.G84A	p.A28A	.	.	947	76	338	0	G|0.979;A|0.021	24
ZNF721	170960	bcgsc.ca	37	4	437831	437831	+	Missense_Mutation	SNP	C	C	T	rs72501950	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF721	NM_133474	exon3	c.C425A	p.S142Y	.	.	275	23	116	0	C|0.854;T|0.146	47
ZNF732	654254	bcgsc.ca	37	4	265278	265278	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF732	NM_001137608	exon3	c.A1365G	p.G455G	.	.	108	5	57	0	.	22
ZNF737	100129842	bcgsc.ca	37	19	20728636	20728636	+	Missense_Mutation	SNP	C	C	A	rs9653154	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF737	NM_001159293	exon4	c.G373T	p.V125L	.	.	609	24	253	0	C|0.979;A|0.021	1
ZNF749	388567	bcgsc.ca	37	19	57955244	57955244	+	Missense_Mutation	SNP	A	A	G	rs12986235	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001023561	exon3	c.A728G	p.Q243R	.	.	166	13	69	1	A|0.771;G|0.229	.
ZNF761	388561	bcgsc.ca	37	19	53958942	53958942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF761	NM_001008401	exon7	c.A1181G	p.K394R	.	.	82	4	35	0	.	91
ZNF763	284390	bcgsc.ca	37	19	12087882	12087882	+	Silent	SNP	G	G	A	rs111399037	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF763	NM_001012753	exon2	c.G42A	p.V14V	.	.	265	10	112	0	G|0.971;A|0.029	90
ZNF763	284390	bcgsc.ca	37	19	12089040	12089040	+	Missense_Mutation	SNP	C	C	T	rs183150224		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF763	NM_001012753	exon4	c.C310T	p.P104S	.	.	292	12	113	0	C|0.991;T|0.009	90
ZNF765	91661	bcgsc.ca	37	19	53911041	53911041	+	Missense_Mutation	SNP	A	A	G	rs116731689	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF765	NM_001040185	exon4	c.A233G	p.E78G	.	.	336	13	146	0	A|0.975;G|0.025	69
ZNF766	90321	bcgsc.ca	37	19	52793328	52793328	+	Missense_Mutation	SNP	G	G	A	rs12462608	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001010851	exon4	c.G284A	p.C95Y	.	.	133	5	69	0	G|0.916;A|0.084	.
ZNF766	90321	bcgsc.ca	37	19	52793332	52793332	+	Silent	SNP	A	A	G	rs12462567	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001010851	exon4	c.A288G	p.A96A	.	.	137	5	72	0	A|0.958;G|0.042	.
ZNF76	7629	bcgsc.ca	37	6	35253974	35253974	+	Missense_Mutation	SNP	C	C	T	rs2228265	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF76	NM_003427	exon3	c.C143T	p.T48M	.	.	112	6	43	0	C|0.910;T|0.090	90
ZNF76	7629	bcgsc.ca	37	6	35260727	35260727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF76	NM_003427	exon11	c.A1235G	p.E412G	.	.	116	5	39	0	.	90
ZNF773	374928	bcgsc.ca	37	19	58017758	58017758	+	Missense_Mutation	SNP	G	G	C	rs55823456	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF773	NM_198542	exon4	c.G295C	p.A99P	.	.	151	9	60	0	G|0.790;C|0.210	91
ZNF774	342132	bcgsc.ca	37	15	90897952	90897952	+	Silent	SNP	C	C	T	rs8023776	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF774	NM_001004309	exon2	c.C60T	p.L20L	.	.	213	13	92	0	C|0.716;T|0.284	90
ZNF77	58492	bcgsc.ca	37	19	2939289	2939289	+	Silent	SNP	A	A	C	rs12608916	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF77	NM_021217	exon2	c.T120G	p.L40L	.	.	114	8	31	0	A|0.853;C|0.147	91
ZNF778	197320	bcgsc.ca	37	16	89293890	89293890	+	Silent	SNP	C	C	T	rs7197077	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001201407	exon7	c.C1194T	p.C398C	.	.	90	5	57	0	C|0.944;T|0.056	.
ZNF780A	284323	bcgsc.ca	37	19	40578857	40578857	+	Silent	SNP	A	A	G	rs57822613	byfrequency;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF780A	NM_001142579	exon8	c.T384C	p.F128F	.	.	104	6	61	0	A|0.986;G|0.014	22
ZNF790	388536	bcgsc.ca	37	19	37310683	37310683	+	Missense_Mutation	SNP	T	T	C	rs141032362	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF790	NM_206894	exon5	c.A563G	p.H188R	.	.	226	8	110	0	T|0.998;C|0.002	92
ZNF799	90576	bcgsc.ca	37	19	12502787	12502787	+	Missense_Mutation	SNP	G	G	A	rs12974755	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF799	NM_001080821	exon4	c.C425T	p.T142M	.	.	658	17	208	0	G|0.898;A|0.102	74
ZNF804B	219578	bcgsc.ca	37	7	88963401	88963401	+	Missense_Mutation	SNP	C	C	T	rs141118086	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF804B	NM_181646	exon4	c.C1105T	p.P369S	.	.	92	6	65	0	C|0.986;T|0.014	101
ZNF804B	219578	bcgsc.ca	37	7	88964196	88964196	+	Missense_Mutation	SNP	T	T	A	rs74687205	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF804B	NM_181646	exon4	c.T1900A	p.F634I	.	.	149	8	79	1	T|0.591;A|0.409	101
ZNF80	7634	bcgsc.ca	37	3	113955820	113955820	+	Silent	SNP	G	G	C	rs3732780	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF80	NM_007136	exon1	c.C102G	p.S34S	.	.	233	12	71	0	G|0.618;C|0.382	90
ZNF80	7634	bcgsc.ca	37	3	113955890	113955890	+	Missense_Mutation	SNP	C	C	T	rs112412956	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF80	NM_007136	exon1	c.G32A	p.G11D	.	.	203	9	75	0	C|0.987;T|0.013	90
ZNF808	388558	bcgsc.ca	37	19	53056953	53056953	+	Missense_Mutation	SNP	G	G	A	rs329965	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039886	exon5	c.G784A	p.D262N	.	.	374	8	158	0	G|0.792;A|0.208	.
ZNF808	388558	hgsc.bcm.edu;bcgsc.ca	37	19	53056571	53056571	+	Missense_Mutation	SNP	G	G	C	rs329964	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001039886	exon5	c.G402C	p.K134N	.	.	592	24	162	0	G|0.983;C|0.017	.
ZNF812	729648	bcgsc.ca	37	19	9801441	9801445	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	rs112014279		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CTCTC	CTCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF812	NM_001199814	exon6	c.734_738del	p.245_246del	.	.	235	13	95	0	CTCTC|0.898;-|0.102	1
ZNF814	730051	bcgsc.ca	37	19	58386314	58386314	+	Silent	SNP	G	G	A	rs111313171	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001144989	exon3	c.C444T	p.Y148Y	.	.	956	31	303	0	G|0.940;A|0.060	.
ZNF816	125893	bcgsc.ca	37	19	53453777	53453777	+	Silent	SNP	C	C	T	rs8110062	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF816	NM_001202457	exon4	c.G1251A	p.K417K	.	.	113	10	42	0	C|0.506;T|0.494	68
ZNF816	125893	bcgsc.ca	37	19	53454789	53454789	+	Missense_Mutation	SNP	A	A	T	rs12459008	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF816	NM_001202457	exon4	c.T239A	p.I80N	.	.	400	12	116	1	A|0.532;T|0.468	68
ZNF816	125893	bcgsc.ca	37	19	53456127	53456127	+	Missense_Mutation	SNP	G	G	A	rs139679541	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF816	NM_001202457	exon3	c.C67T	p.R23C	.	.	83	5	67	0	G|0.999;A|0.001	68
ZNF833P	401898	bcgsc.ca	37	19	11796869	11796869	+	RNA	SNP	G	G	T	rs286299	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF833P	.	.	.	.	.	.	101	8	33	0	G|0.698;T|0.302	91
ZNF833P	401898	bcgsc.ca	37	19	11797112	11797112	+	RNA	SNP	C	C	T	rs8108874	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF833P	.	.	.	.	.	.	208	16	67	0	C|0.688;T|0.312	91
ZNF833P	401898	bcgsc.ca	37	19	11797252	11797252	+	RNA	SNP	T	T	A	rs185926	byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF833P	.	.	.	.	.	.	266	11	129	0	T|0.878;A|0.122	91
ZNF833P	401898	bcgsc.ca	37	19	11797308	11797308	+	RNA	SNP	C	C	T	rs286300	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF833P	.	.	.	.	.	.	236	8	126	0	C|0.814;T|0.186	91
ZNF835	90485	bcgsc.ca	37	19	57175955	57175955	+	Silent	SNP	C	C	A	rs11882271	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF835	NM_001005850	exon2	c.G612T	p.T204T	.	.	71	6	49	0	C|0.986;A|0.014	72
ZNF836	162962	bcgsc.ca	37	19	52660279	52660279	+	Missense_Mutation	SNP	C	C	T	rs1366245	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF836	NM_001102657	exon5	c.G657A	p.M219I	.	.	376	11	119	0	C|0.564;T|0.436	46
ZNF839	55778	bcgsc.ca	37	14	102797976	102797976	+	Silent	SNP	C	C	T	rs115710329		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF839	NM_018335	exon3	c.C1209T	p.D403D	.	.	120	7	50	0	C|0.997;T|0.003	91
ZNF839	55778	bcgsc.ca	37	14	102805245	102805245	+	Missense_Mutation	SNP	T	T	A	rs116469270		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF839	NM_018335	exon6	c.T1752A	p.D584E	.	.	184	8	81	0	T|0.994;A|0.006	91
ZNF841	284371	bcgsc.ca	37	19	52568422	52568422	+	Missense_Mutation	SNP	T	T	G	rs61743893	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136499	exon7	c.A2713C	p.T905P	.	.	342	11	153	0	T|0.939;G|0.061	.
ZNF841	284371	bcgsc.ca	37	19	52568642	52568642	+	Silent	SNP	G	G	A	rs61743324	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136499	exon7	c.C2493T	p.I831I	.	.	196	8	84	0	G|0.973;A|0.027	.
ZNF841	284371	bcgsc.ca	37	19	52569479	52569479	+	Silent	SNP	G	G	A	rs61738706	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136499	exon7	c.C1656T	p.Y552Y	.	.	81	5	41	0	G|0.979;A|0.021	.
ZNF844	284391	bcgsc.ca	37	19	12186148	12186148	+	Silent	SNP	T	T	C	rs10424893	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136501	exon4	c.T213C	p.V71V	.	.	55	4	33	0	T|0.724;C|0.276	.
ZNF844	284391	bcgsc.ca	37	19	12186611	12186611	+	Missense_Mutation	SNP	A	A	G	rs7259684	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136501	exon4	c.A676G	p.K226E	.	.	80	5	56	0	A|0.853;G|0.147	.
ZNF844	284391	bcgsc.ca	37	19	12186857	12186857	+	Missense_Mutation	SNP	G	G	C	rs6511763	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136501	exon4	c.G922C	p.A308P	.	.	179	6	55	0	G|0.739;C|0.261	.
ZNF844	284391	hgsc.bcm.edu;bcgsc.ca	37	19	12186815	12186815	+	Missense_Mutation	SNP	C	C	T	rs193079644	by1000genomes	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001136501	exon4	c.C880T	p.H294Y	.	.	152	11	60	0	C|0.999;T|0.000	.
ZNF846	162993	bcgsc.ca	37	19	9868278	9868278	+	Missense_Mutation	SNP	T	T	C	rs10420364	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF846	NM_001077624	exon6	c.A1475G	p.Y492C	.	.	334	22	117	0	T|0.774;C|0.226	23
ZNF846	162993	bcgsc.ca	37	19	9868404	9868404	+	Missense_Mutation	SNP	C	C	T	rs10414485	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF846	NM_001077624	exon6	c.G1349A	p.C450Y	.	.	235	19	102	0	C|0.748;T|0.252	23
ZNF860	344787	bcgsc.ca	37	3	32031135	32031135	+	Silent	SNP	A	A	G	rs6419811	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF860	NM_001137674	exon2	c.A564G	p.S188S	.	.	278	8	130	1	A|0.568;G|0.432	1
ZNF862	643641	bcgsc.ca	37	7	149547273	149547273	+	Silent	SNP	G	G	A	rs112719493		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF862	NM_001099220	exon5	c.G963A	p.S321S	.	.	323	14	132	0	G|0.960;A|0.040	69
ZNF8	7554	bcgsc.ca	37	19	58806083	58806083	+	Silent	SNP	T	T	C	rs260471	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF8	NM_021089	exon4	c.T909C	p.H303H	.	.	197	13	45	0	T|0.652;C|0.348	91
ZNF8	7554	bcgsc.ca	37	19	58806686	58806686	+	Silent	SNP	A	A	G	rs17853924	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF8	NM_021089	exon4	c.A1512G	p.Q504Q	.	.	75	4	49	0	A|0.946;G|0.054	91
ZNF878	729747	bcgsc.ca	37	19	12155494	12155494	+	Missense_Mutation	SNP	G	G	A	rs78408076		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001080404	exon4	c.C722T	p.S241L	.	.	295	12	87	0	G|0.971;A|0.029	.
ZNF880	400713	bcgsc.ca	37	19	52876384	52876384	+	Silent	SNP	C	C	T	rs7256752		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145434	exon2	c.C33T	p.D11D	.	.	392	15	113	0	C|0.975;T|0.025	.
ZNF880	400713	bcgsc.ca	37	19	52876400	52876400	+	Missense_Mutation	SNP	C	C	T	rs7256760		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145434	exon2	c.C49T	p.P17S	.	.	336	14	110	0	C|0.978;T|0.022	.
ZNF880	400713	bcgsc.ca	37	19	52877677	52877677	+	Missense_Mutation	SNP	G	G	A	rs79588580		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145434	exon3	c.G265A	p.A89T	.	.	181	9	81	0	G|0.975;A|0.025	.
ZNF880	400713	bcgsc.ca	37	19	52887294	52887294	+	Missense_Mutation	SNP	A	A	G	rs56370398	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001145434	exon4	c.A461G	p.K154R	.	.	214	7	116	0	A|0.974;G|0.026	.
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23556550	23556550	+	Missense_Mutation	SNP	G	G	A	rs148956643		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF91	NM_003430	exon3	c.C247T	p.P83S	.	.	253	18	64	0	G|0.992;A|0.008	90
ZNF92	168374	bcgsc.ca	37	7	64863392	64863392	+	Missense_Mutation	SNP	C	C	T	rs10265083	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF92	NM_152626	exon4	c.C365T	p.A122V	.	.	362	18	137	0	C|0.725;T|0.275	514
ZNF92	168374	bcgsc.ca	37	7	64864607	64864607	+	Missense_Mutation	SNP	G	G	A	rs10239197	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF92	NM_152626	exon4	c.G1580A	p.R527H	.	.	84	4	69	0	G|0.717;A|0.283	514
ZNF99	7652	bcgsc.ca	37	19	22940659	22940659	+	Silent	SNP	C	C	T	rs59621958	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF99	NM_001080409	exon4	c.G2052A	p.K684K	.	.	88	7	51	0	C|0.826;T|0.174	24
ZNF99	7652	bcgsc.ca	37	19	22940899	22940899	+	Silent	SNP	G	G	A	rs59017672	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF99	NM_001080409	exon4	c.C1812T	p.H604H	.	.	198	10	85	0	A|0.316;G|0.684;T|0.001	24
ZNF99	7652	bcgsc.ca	37	19	22941617	22941617	+	Missense_Mutation	SNP	T	T	C	rs58653025	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF99	NM_001080409	exon4	c.A1094G	p.E365G	.	.	124	9	46	0	T|0.811;C|0.189	24
ZNF99	7652	bcgsc.ca	37	19	22942325	22942325	+	Missense_Mutation	SNP	G	G	C	rs7255780	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF99	NM_001080409	exon4	c.C386G	p.A129G	.	.	312	21	134	0	G|0.636;C|0.364	24
ZNF99	7652	bcgsc.ca	37	19	22952111	22952111	+	Missense_Mutation	SNP	A	A	G	rs34726149	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZNF99	NM_001080409	exon2	c.T19C	p.W7R	.	.	220	15	90	0	A|0.809;G|0.191	24
ZP2	7783	bcgsc.ca	37	16	21217061	21217061	+	Silent	SNP	G	G	A	rs16971234	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZP2	NM_003460	exon6	c.C519T	p.D173D	.	.	243	10	131	0	G|0.763;A|0.237	91
ZP2	7783	bcgsc.ca	37	16	21217085	21217085	+	Silent	SNP	T	T	G	rs35162028	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZP2	NM_003460	exon6	c.A495C	p.P165P	.	.	260	9	142	0	T|0.984;G|0.016	91
ZP3	7784	bcgsc.ca	37	7	76069629	76069629	+	Silent	SNP	G	G	A	rs79425252		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZP3	NM_001110354	exon6	c.G894A	p.K298K	.	.	1343	32	388	0	.	90
ZP4	57829	bcgsc.ca	37	1	238049143	238049143	+	Missense_Mutation	SNP	G	G	A	rs34811980	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZP4	NM_021186	exon7	c.C883T	p.P295S	.	.	132	6	46	0	G|0.973;A|0.027	93
ZP4	57829	bcgsc.ca	37	1	238050136	238050136	+	Silent	SNP	T	T	C	rs520720	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZP4	NM_021186	exon6	c.A774G	p.E258E	.	.	164	13	43	0	T|0.856;C|0.144	93
ZP4	57829	bcgsc.ca	37	1	238053226	238053226	+	Missense_Mutation	SNP	G	G	A	rs34370253	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZP4	NM_021186	exon3	c.C341T	p.A114V	.	.	165	11	59	0	G|0.973;A|0.027	93
ZRANB3	84083	bcgsc.ca	37	2	136107710	136107710	+	Silent	SNP	T	T	G	rs58165671	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZRANB3	NM_032143	exon5	c.A435C	p.A145A	.	.	144	7	57	0	T|0.960;G|0.040	658
ZSCAN18	65982	bcgsc.ca	37	19	58597611	58597611	+	Missense_Mutation	SNP	G	G	C	rs147947490	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZSCAN18	NM_001145542	exon6	c.C936G	p.D312E	.	.	125	7	39	0	G|0.993;C|0.007	90
ZSCAN26	7741	bcgsc.ca	37	6	28239915	28239915	+	RNA	SNP	G	G	A	rs11965538	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	122	9	30	0	G|0.839;A|0.161	.
ZSCAN29	146050	bcgsc.ca	37	15	43661802	43661802	+	Missense_Mutation	SNP	T	T	C	rs3809482	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZSCAN29	NM_152455	exon1	c.A310G	p.R104G	.	.	249	22	88	0	T|0.485;C|0.515	91
ZSCAN29	146050	hgsc.bcm.edu;bcgsc.ca	37	15	43653851	43653851	+	Missense_Mutation	SNP	A	A	C	rs142885180	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZSCAN29	NM_152455	exon5	c.T1979G	p.F660C	.	.	229	10	119	0	A|0.998;C|0.002	91
ZSCAN31	64288	bcgsc.ca	37	6	28297313	28297313	+	Missense_Mutation	SNP	T	T	A	rs853678	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_030899	exon2	c.A148T	p.T50S	.	.	156	15	80	0	T|0.639;N|0.000	.
ZSCAN4	201516	bcgsc.ca	37	19	58189823	58189823	+	Missense_Mutation	SNP	G	G	C	rs116138022	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZSCAN4	NM_152677	exon5	c.G852C	p.E284D	.	.	127	5	64	0	G|0.975;C|0.025	91
ZSCAN5B	342933	bcgsc.ca	37	19	56702323	56702323	+	Missense_Mutation	SNP	C	C	T	rs4801296	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZSCAN5B	NM_001080456	exon3	c.G622A	p.V208I	.	.	502	17	121	0	C|0.532;T|0.468	24
ZSWIM1	90204	bcgsc.ca	37	20	44511627	44511627	+	Silent	SNP	C	C	T	rs11086984	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZSWIM1	NM_080603	exon2	c.C396T	p.F132F	.	.	220	8	78	0	C|0.930;T|0.070	91
ZW10	9183	hgsc.bcm.edu;bcgsc.ca	37	11	113607488	113607488	+	Silent	SNP	A	A	G	rs146501766	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZW10	NM_004724	exon15	c.T2073C	p.D691D	.	.	402	20	149	0	A|0.998;G|0.002	228
ZWINT	11130	bcgsc.ca	37	10	58118215	58118215	+	Silent	SNP	A	A	G	rs73283603	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZWINT	NM_007057	exon8	c.T798C	p.V266V	.	.	245	16	82	1	A|0.979;G|0.021	227
ZXDC	79364	ucsc.edu	37	3	126158533	126158533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZXDC	NM_025112	exon9	c.G2432A	p.R811H	.	.	40	4	17	0	.	91
ZYG11A	440590	bcgsc.ca	37	1	53326421	53326421	+	Missense_Mutation	SNP	A	A	G	rs61744306	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	NM_001004339	exon4	c.A1027G	p.M343V	.	.	293	17	109	0	A|0.983;G|0.017	.
ZZEF1	23140	bcgsc.ca	37	17	3920884	3920884	+	Silent	SNP	C	C	T	rs2676278	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon48	c.G7782A	p.E2594E	.	.	129	6	43	0	C|0.913;T|0.087	93
ZZEF1	23140	bcgsc.ca	37	17	3920977	3920977	+	Silent	SNP	C	C	T	rs2676279	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon48	c.G7689A	p.V2563V	.	.	107	7	45	0	C|0.923;T|0.077	93
ZZEF1	23140	bcgsc.ca	37	17	3924566	3924566	+	Missense_Mutation	SNP	C	C	T	rs781861	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon45	c.G7261A	p.A2421T	.	.	127	9	50	0	C|0.915;T|0.085	93
ZZEF1	23140	bcgsc.ca	37	17	3947644	3947644	+	Missense_Mutation	SNP	T	T	C	rs781831	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon38	c.A6040G	p.I2014V	.	.	433	31	180	2	T|0.364;G|0.108	93
ZZEF1	23140	bcgsc.ca	37	17	3953083	3953083	+	Silent	SNP	T	T	C	rs781853	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon37	c.A5934G	p.P1978P	.	.	128	7	37	0	T|0.502;C|0.498	93
ZZEF1	23140	bcgsc.ca	37	17	3953102	3953102	+	Missense_Mutation	SNP	A	A	G	rs781852	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon37	c.T5915C	p.L1972P	.	.	130	6	32	0	T|0.116;G|0.406	93
ZZEF1	23140	bcgsc.ca	37	17	4015997	4015997	+	Silent	SNP	A	A	G	rs58625333	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon5	c.T972C	p.N324N	.	.	183	8	47	0	A|0.736;G|0.264	93
ZZEF1	23140	ucsc.edu	37	17	3966064	3966064	+	Silent	SNP	A	A	G	rs781825	byfrequency	TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	ZZEF1	NM_015113	exon30	c.T4866C	p.C1622C	.	.	62	7	18	0	A|0.487;G|0.513	93
RP11-113D6.10	0	bcgsc.ca	37	11	18231433	18231434	+	Missense_Mutation	DNP	GG	GG	AC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.G74R	.	.	.	.	.	.	.	
OR5L2	26338	bcgsc.ca	37	11	55595114	55595115	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.R141C	.	.	.	.	.	.	.	
PIWIL4	143689	bcgsc.ca	37	11	94322352	94322353	+	Missense_Mutation	DNP	AG	AG	TA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.Q327L	.	.	.	.	.	.	.	
TAS2R42	353164	bcgsc.ca	37	12	11338613	11338614	+	Missense_Mutation	DNP	CA	CA	GG	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.A311P	.	.	.	.	.	.	.	
LINC00477	144360	bcgsc.ca	37	12	24737061	24737062	+	RNA	DNP	GC	GC	AA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	.	.	.	.	.	
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23909670	23909671	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.A2782I	.	.	.	.	.	.	.	
AHNAK2	113146	bcgsc.ca	37	14	105412259	105412260	+	Missense_Mutation	DNP	GG	GG	CC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.DL3176EV	.	.	.	.	.	.	.	
AHNAK2	113146	bcgsc.ca	37	14	105418275	105418276	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.P1171L	.	.	.	.	.	.	.	
NUSAP1	51203	ucsc.edu;bcgsc.ca	37	15	41634587	41634588	+	Missense_Mutation	DNP	AC	AC	GA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.T33D	.	.	.	.	.	.	.	
CTD-2022H16.2	0	bcgsc.ca	37	15	30297758	30297759	+	RNA	DNP	GT	GT	AC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	.	.	.	.	.	
FAM214A	56204	bcgsc.ca	37	15	52901283	52901284	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.T617A	.	.	.	.	.	.	.	
ZNF700	90592	bcgsc.ca	37	19	12058341	12058342	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.S68K	.	.	.	.	.	.	.	
BIRC8	112401	bcgsc.ca	37	19	53792954	53792955	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.A225M	.	.	.	.	.	.	.	
ZNF773	374928	bcgsc.ca	37	19	58017753	58017754	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.A97E	.	.	.	.	.	.	.	
PRAMEF2	65122	bcgsc.ca	37	1	12919623	12919624	+	Missense_Mutation	DNP	CC	CC	TG	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.L122V	.	.	.	.	.	.	.	
GSTM5	2949	bcgsc.ca	37	1	110257835	110257836	+	Silent	DNP	CT	CT	TC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.L198L	.	.	.	.	.	.	.	
FLG	2312	bcgsc.ca	37	1	152284456	152284457	+	Missense_Mutation	DNP	TT	TT	GA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.N969S	.	.	.	.	.	.	.	
FMO2	2327	bcgsc.ca	37	1	171168584	171168585	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.S195L	.	.	.	.	.	.	.	
VPREB1	7441	bcgsc.ca	37	22	22599215	22599216	+	Missense_Mutation	DNP	AT	AT	GC	rs35044569		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.M1A	.	.	.	.	.	.	.	
ANKRD36B	57730	bcgsc.ca	37	2	98206012	98206013	+	RNA	DNP	GC	GC	AT	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	.	.	.	.	.	
MERTK	10461	bcgsc.ca	37	2	112754942	112754943	+	Missense_Mutation	DNP	AC	AC	GT	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.N498S	.	.	.	.	.	.	.	
TANC1	85461	bcgsc.ca	37	2	160086653	160086654	+	Missense_Mutation	DNP	CA	CA	TG	rs67270488		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.T1573A	.	.	.	.	.	.	.	
CEP120	153241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122718561	122718562	+	Missense_Mutation	DNP	TT	TT	GC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.K628A	.	.	.	.	.	.	.	
ZKSCAN3	80317	bcgsc.ca	37	6	28331127	28331128	+	Missense_Mutation	DNP	AA	AA	GC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.K200A	.	.	.	.	.	.	.	
AQP1	358	bcgsc.ca	37	7	30915262	30915263	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.M655V	.	.	.	.	.	.	.	
RP5-1193P9.4	0	bcgsc.ca	37	7	63441827	63441828	+	RNA	DNP	TG	TG	CA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	.	.	.	.	.	
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113662542	113662543	+	Missense_Mutation	DNP	CC	CC	TA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.G1014Y	.	.	.	.	.	.	.	
DOCK8	81704	bcgsc.ca	37	9	368288	368289	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.W63R	.	.	.	.	.	.	.	
ANKRD18A	253650	bcgsc.ca	37	9	38575611	38575612	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	p.T942M	.	.	.	.	.	.	.	
RP13-60M5.2	0	bcgsc.ca	37	9	91262493	91262494	+	RNA	DNP	AG	AG	CT	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	.	.	.	.	.	
AC012078.2	0	bcgsc.ca	37	Y	3720391	3720392	+	RNA	DNP	AT	AT	GA	novel		TCGA-BC-A10S-01A-22D-A12Z-10	TCGA-BC-A10S-11A-11D-A16Z-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cc8663e0-7310-4ba7-b010-6f66361c2fa0	e82d722e-b10d-43fa-a968-b3378fbb0470	.	.	.	.	.	.	.	.	.	.	.	.	.	
