Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	bcgsc.ca	37	12	8998036	8998036	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	A2ML1	NM_144670	exon13	c.1477-2A>T	.	.	.	66	5	43	0	.	93
AANAT	15	broad.mit.edu;bcgsc.ca	37	17	74465897	74465897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AANAT	NM_001166579	exon7	c.G604A	p.A202T	.	.	91	7	65	0	.	90
ABCA1	19	bcgsc.ca	37	9	107573117	107573117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCA1	NM_005502	exon29	c.A4139G	p.Q1380R	.	.	102	5	116	0	.	1016
ABCA1	19	bcgsc.ca	37	9	107584905	107584905	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCA1	NM_005502	exon19	c.C2700T	p.S900S	.	.	118	5	112	0	.	1016
ABCB10	23456	hgsc.bcm.edu;bcgsc.ca	37	1	229666086	229666086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCB10	NM_012089	exon8	c.C1505T	p.P502L	.	.	90	5	119	0	.	153
ABCC12	94160	bcgsc.ca	37	16	48177832	48177832	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCC12	NM_033226	exon2	c.C264A	p.T88T	.	.	86	4	168	0	.	93
ABCC2	1244	bcgsc.ca	37	10	101554224	101554224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCC2	NM_000392	exon6	c.A631G	p.S211G	.	.	147	5	358	0	.	91
ABCC4	10257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95887013	95887013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABCC4	NM_005845	exon4	c.T382G	p.S128A	.	.	105	26	118	0	.	515
ABHD12	26090	bcgsc.ca	37	20	25295562	25295562	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABHD12	NM_001042472	exon6	c.A618G	p.R206R	.	.	81	4	104	1	.	91
ABI3BP	25890	bcgsc.ca	37	3	100568907	100568907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABI3BP	NM_015429	exon15	c.A1357G	p.M453V	.	.	228	6	268	0	.	138
ABO	28	bcgsc.ca	37	9	136133523	136133523	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ABO	NM_020469	exon6	c.204-1G>T	.	.	.	62	4	52	0	.	90
ACADVL	37	bcgsc.ca	37	17	7123946	7123946	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACADVL	NM_001270447	exon5	c.A297G	p.G99G	.	.	71	4	128	0	.	93
ACAP1	9744	bcgsc.ca	37	17	7249744	7249744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACAP1	NM_014716	exon12	c.T941C	p.L314P	.	.	122	6	130	0	.	153
ACE	1636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61556398	61556398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACE	NM_000789	exon3	c.A448G	p.I150V	.	.	91	44	98	0	.	94
ACOX1	51	bcgsc.ca	37	17	73945677	73945677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACOX1	NM_007292	exon11	c.G1483A	p.V495I	.	.	139	5	145	0	.	91
ACSBG2	81616	bcgsc.ca	37	19	6147649	6147649	+	Missense_Mutation	SNP	A	A	G	rs143949111	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACSBG2	NM_030924	exon3	c.A260G	p.Y87C	.	.	65	4	116	0	A|1.000;C|0.000	23
ACTA1	58	hgsc.bcm.edu	37	1	229568488	229568488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACTA1	NM_001100	exon3	c.A269G	p.H90R	.	.	100	4	132	0	.	90
ACTN2	88	bcgsc.ca	37	1	236902792	236902792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACTN2	NM_001103	exon10	c.A1067G	p.N356S	.	.	119	7	171	1	.	95
ACVR1B	91	bcgsc.ca	37	12	52385776	52385776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ACVR1B	NM_020328	exon9	c.A1514G	p.E505G	.	.	103	5	145	0	.	1015
ADAMTS19	171019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129070694	129070694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADAMTS19	NM_133638	exon22	c.C3364A	p.H1122N	.	.	496	228	425	2	.	295
ADAMTS20	80070	bcgsc.ca	37	12	43750330	43750330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADAMTS20	NM_025003	exon38	c.T5600C	p.L1867P	.	.	97	4	126	0	.	795
ADAMTS6	11174	hgsc.bcm.edu	37	5	64558682	64558682	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADAMTS6	NM_197941	exon13	c.A1728G	p.G576G	.	.	88	4	53	0	.	226
ADAMTSL1	92949	bcgsc.ca	37	9	18474261	18474261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADAMTSL1	NM_052866	exon1	c.A31G	p.T11A	.	.	234	7	242	0	.	230
ADD2	119	hgsc.bcm.edu	37	2	70919547	70919547	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADD2	NM_001185055	exon6	c.G741A	p.P247P	.	.	92	4	78	0	.	93
ADGB	79747	bcgsc.ca	37	6	146993370	146993370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_024694	exon8	c.A854G	p.D285G	.	.	229	7	230	0	.	.
ADORA3	140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	112042758	112042758	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ADORA3	NM_000677	exon2	c.T771A	p.G257G	.	.	341	20	202	1	.	156
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	88035706	88035706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFF1	NM_001166693	exon12	c.C1721A	p.S574Y	.	.	62	17	76	0	.	289
AFF3	3899	hgsc.bcm.edu	37	2	100343586	100343586	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFF3	NM_001025108	exon10	c.A1119G	p.K373K	.	.	80	4	83	0	.	230
AFMID	125061	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	76198608	76198608	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AFMID	NM_001145526	exon3	c.G183A	p.K61K	.	.	53	31	55	0	.	136
AHNAK	79026	bcgsc.ca	37	11	62288596	62288596	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AHNAK	NM_001620	exon5	c.T13293C	p.P4431P	.	.	226	8	299	0	.	109
AK2	204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33478978	33478978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AK2	NM_013411	exon6	c.G524A	p.R175Q	.	.	109	44	161	0	.	252
AKAP7	9465	broad.mit.edu;bcgsc.ca	37	6	131486326	131486326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AKAP7	NM_016377	exon4	c.A397G	p.M133V	.	.	299	9	366	0	.	228
AKAP9	10142	bcgsc.ca	37	7	91631754	91631754	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AKAP9	NM_005751	exon8	c.A2523G	p.E841E	.	.	167	6	218	1	.	755
AKNAD1	254268	bcgsc.ca	37	1	109391381	109391381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AKNAD1	NM_152763	exon5	c.A1238G	p.K413R	.	.	229	8	139	1	.	93
AKR1C2	1646	bcgsc.ca	37	10	5043800	5043800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AKR1C2	NM_001354	exon4	c.A158G	p.H53R	.	.	205	7	297	0	.	514
ALDH1A2	8854	bcgsc.ca	37	15	58287280	58287280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALDH1A2	NM_003888	exon5	c.T551C	p.I184T	.	.	89	4	88	0	.	226
ALOX12	239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6905064	6905064	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALOX12	NM_000697	exon8	c.C1095T	p.H365H	.	.	73	19	95	0	.	226
ALPK1	80216	bcgsc.ca	37	4	113360965	113360965	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALPK1	NM_001102406	exon14	c.T3475C	p.L1159L	.	.	129	5	148	1	.	337
ALPK2	115701	bcgsc.ca	37	18	56246933	56246933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALPK2	NM_052947	exon4	c.A1075G	p.S359G	.	.	138	5	194	0	.	765
ALPK2	115701	broad.mit.edu;bcgsc.ca	37	18	56246726	56246726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ALPK2	NM_052947	exon4	c.G1282C	p.G428R	.	.	130	9	149	0	.	765
ANK2	287	hgsc.bcm.edu	37	4	114274414	114274414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ANK2	NM_001148	exon38	c.A4640G	p.E1547G	.	.	106	5	121	0	.	583
ANK3	288	bcgsc.ca	37	10	61822999	61822999	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ANK3	NM_020987	exon40	c.T12465C	p.T4155T	.	.	89	4	95	0	.	107
ANKS1B	56899	broad.mit.edu	37	12	100166783	100166783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_152788	exon8	c.T1045C	p.C349R	.	.	532	10	531	0	.	.
ANXA4	307	bcgsc.ca	37	2	70046451	70046451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ANXA4	NM_001153	exon11	c.A764G	p.K255R	.	.	160	5	219	0	.	90
AP2M1	1173	bcgsc.ca	37	3	183899712	183899712	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AP2M1	NM_001025205	exon8	c.C834T	p.T278T	.	.	131	5	173	0	.	90
AP3B2	8120	bcgsc.ca	37	15	83349683	83349683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AP3B2	NM_004644	exon7	c.A677G	p.N226S	.	.	153	7	143	1	.	94
AP3D1	8943	ucsc.edu	37	19	2120900	2120900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	AP3D1	NM_001261826	exon14	c.T1442C	p.V481A	.	.	45	4	83	1	.	90
APMAP	57136	bcgsc.ca	37	20	24950973	24950973	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_020531	exon6	c.C573T	p.P191P	.	.	146	7	160	1	.	.
ARHGAP24	83478	bcgsc.ca	37	4	86916370	86916370	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGAP24	NM_001025616	exon9	c.A1563G	p.G521G	.	.	78	4	131	1	.	227
ARHGAP25	9938	hgsc.bcm.edu;bcgsc.ca	37	2	69053300	69053300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGAP25	NM_001007231	exon11	c.A1915G	p.M639V	.	.	67	4	102	0	.	274
ARHGAP30	257106	broad.mit.edu	37	1	161018555	161018555	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGAP30	NM_001025598	exon12	c.A2256G	p.R752R	.	.	2612	18	1010	2	.	25
ARHGAP31	57514	bcgsc.ca	37	3	119133128	119133128	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGAP31	NM_020754	exon12	c.T2352C	p.A784A	.	.	61	5	80	1	.	92
ARHGEF11	9826	hgsc.bcm.edu	37	1	156909536	156909536	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGEF11	NM_198236	exon37	c.T3900C	p.G1300G	.	.	164	7	71	0	.	233
ARHGEF26	26084	bcgsc.ca	37	3	153905524	153905524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGEF26	NM_001251962	exon7	c.A1538G	p.D513G	.	.	323	8	403	1	.	47
ARHGEF37	389337	hgsc.bcm.edu	37	5	148980772	148980772	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGEF37	NM_001001669	exon3	c.A288G	p.E96E	.	.	100	4	86	0	.	90
ARHGEF40	55701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21552186	21552186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARHGEF40	NM_018071	exon17	c.G3766A	p.V1256M	.	.	97	35	160	0	.	228
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27056354	27056354	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARID1A	NM_006015	exon2	c.G1350A	p.Q450Q	.	.	223	129	315	1	.	584
ARSJ	79642	bcgsc.ca	37	4	114823509	114823509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ARSJ	NM_024590	exon2	c.A1721G	p.K574R	.	.	206	6	203	1	.	91
ART3	419	hgsc.bcm.edu	37	4	77018798	77018798	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ART3	NM_001130017	exon4	c.A783G	p.G261G	.	.	97	4	139	0	.	92
ASAP2	8853	hgsc.bcm.edu;bcgsc.ca	37	2	9541497	9541497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASAP2	NM_003887	exon27	c.T2918C	p.V973A	.	.	148	7	138	0	.	90
ASH1L	55870	broad.mit.edu	37	1	155449851	155449851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASH1L	NM_018489	exon3	c.A2810G	p.E937G	.	.	554	9	205	0	.	234
ASIP	434	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	32856830	32856830	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ASIP	NM_001672	exon3	c.C256A	p.R86R	.	.	51	26	42	0	.	90
ATAD5	79915	bcgsc.ca	37	17	29221117	29221117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATAD5	NM_024857	exon21	c.T5246C	p.V1749A	.	.	102	5	116	1	.	93
ATM	472	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	108127032	108127032	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATM	NM_000051	exon14	c.G2215T	p.E739X	.	.	120	43	136	1	.	3419
ATP10B	23120	hgsc.bcm.edu;bcgsc.ca	37	5	160063301	160063301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATP10B	NM_025153	exon11	c.A1016G	p.N339S	.	.	85	4	65	0	.	72
ATP2B1	490	bcgsc.ca	37	12	90028964	90028964	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATP2B1	NM_001001323	exon3	c.T471C	p.A157A	.	.	140	5	132	0	.	516
ATP8A2	51761	bcgsc.ca	37	13	26127985	26127985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ATP8A2	NM_016529	exon12	c.A1112G	p.N371S	.	.	220	6	262	0	.	138
BANF1	8815	bcgsc.ca	37	11	65771210	65771210	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BANF1	NM_001143985	exon3	c.A237G	p.G79G	.	.	143	6	158	1	.	90
BANP	54971	bcgsc.ca	37	16	88014707	88014707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BANP	NM_001173540	exon3	c.A154G	p.I52V	.	.	81	4	158	0	.	226
BCKDHA	593	bcgsc.ca	37	19	41928532	41928532	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BCKDHA	NM_000709	exon7	c.854-2A>G	.	.	.	79	4	48	0	.	90
BDP1	55814	bcgsc.ca	37	5	70820149	70820149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BDP1	NM_018429	exon25	c.A5771G	p.E1924G	.	.	264	7	271	1	.	92
BHLHE40	8553	hgsc.bcm.edu;bcgsc.ca	37	3	5025019	5025019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BHLHE40	NM_003670	exon5	c.T881C	p.L294P	.	.	83	5	95	0	.	91
BIRC3	330	broad.mit.edu;bcgsc.ca	37	11	102196278	102196278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BIRC3	NM_001165	exon3	c.A935G	p.H312R	.	.	397	10	494	1	.	662
BIRC5	332	bcgsc.ca	37	17	76210844	76210844	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BIRC5	NM_001012270	exon2	c.A195G	p.E65E	.	.	166	5	121	0	.	1083
BMP3	651	bcgsc.ca	37	4	81967214	81967214	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BMP3	NM_001201	exon2	c.A639G	p.E213E	.	.	63	4	75	1	.	518
BPTF	2186	bcgsc.ca	37	17	65971910	65971910	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BPTF	NM_182641	exon27	c.A8562G	p.R2854R	.	.	118	5	111	0	.	94
BTBD16	118663	bcgsc.ca	37	10	124089010	124089010	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	BTBD16	NM_144587	exon11	c.T927C	p.C309C	.	.	72	4	95	1	.	91
BTBD19	149478	hgsc.bcm.edu;bcgsc.ca	37	1	45275896	45275896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001136537	exon2	c.T98C	p.F33S	.	.	80	4	65	0	.	.
C10orf12	26148	bcgsc.ca	37	10	98742788	98742788	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C10orf12	NM_015652	exon1	c.A1641G	p.K547K	.	.	62	4	103	0	.	92
C16orf62	57020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19567048	19567048	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C16orf62	NM_020314	exon1	c.G264T	p.G88G	.	.	88	31	68	0	.	69
C16orf96	342346	bcgsc.ca	37	16	4638305	4638305	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001145011	exon9	c.G2565A	p.E855E	.	.	96	4	80	0	.	.
C18orf8	29919	bcgsc.ca	37	18	21083637	21083637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C18orf8	NM_013326	exon1	c.A55G	p.K19E	.	.	75	4	73	0	.	91
C1GALT1C1	29071	bcgsc.ca	37	X	119760957	119760957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C1GALT1C1	NM_152692	exon3	c.T65C	p.I22T	.	.	52	4	79	0	.	130
C1orf122	127687	broad.mit.edu	37	1	38274651	38274651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C1orf122	NM_198446	exon3	c.A239G	p.N80S	.	.	121	4	106	0	.	90
C1orf127	148345	bcgsc.ca	37	1	11024324	11024324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C1orf127	NM_001170754	exon5	c.C377T	p.A126V	.	.	38	4	83	0	.	91
C1orf198	84886	hgsc.bcm.edu	37	1	231004122	231004122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C1orf198	NM_032800	exon1	c.A137G	p.D46G	.	.	108	5	110	0	.	90
C2	717	bcgsc.ca	37	6	31907016	31907016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C2	NM_000063	exon9	c.A1138G	p.N380D	.	.	134	5	148	0	.	92
C2	717	bcgsc.ca	37	6	31911968	31911968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C2	NM_000063	exon15	c.A1867G	p.S623G	.	.	191	6	201	0	.	92
C2orf16	84226	hgsc.bcm.edu	37	2	27803857	27803857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C2orf16	NM_032266	exon1	c.A4418G	p.Q1473R	.	.	74	5	78	0	.	67
C2orf57	165100	hgsc.bcm.edu	37	2	232458839	232458839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C2orf57	NM_152614	exon1	c.A1177G	p.N393D	.	.	100	4	84	0	.	91
C3orf20	84077	hgsc.bcm.edu	37	3	14724660	14724660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C3orf20	NM_032137	exon3	c.A440G	p.E147G	.	.	118	5	109	0	.	94
C4orf21	55345	bcgsc.ca	37	4	113483531	113483531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C4orf21	NM_018392	exon18	c.A4693G	p.T1565A	.	.	155	5	207	0	.	90
C4orf22	255119	hgsc.bcm.edu;bcgsc.ca	37	4	81791253	81791254	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	C4orf22,upper_back,malignant_melanoma,0	C4orf22	NM_001206997	exon5	c.491_492insA	p.G164fs	.	.	257	74	279	0	.	93
C8orf48	157773	bcgsc.ca	37	8	13424938	13424938	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001007090	exon1	c.A438G	p.R146R	.	.	162	5	175	2	.	.
C9orf41	138199	bcgsc.ca	37	9	77614740	77614740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C9orf41	NM_152420	exon4	c.A637G	p.R213G	.	.	95	4	125	1	.	92
C9orf72	203228	bcgsc.ca	37	9	27562468	27562468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	C9orf72	NM_018325	exon4	c.A511G	p.S171G	.	.	74	4	74	0	.	517
CA12	771	bcgsc.ca	37	15	63632933	63632933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CA12	NM_206925	exon6	c.A575G	p.H192R	.	.	78	5	79	0	.	515
CACNA1A	773	bcgsc.ca	37	19	13363907	13363907	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CACNA1A	NM_001127221	exon30	c.G4767A	p.G1589G	.	.	60	4	85	0	.	67
CACNA1D	776	hgsc.bcm.edu	37	3	53839136	53839136	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CACNA1D	NM_000720	exon46	c.A5772G	p.R1924R	.	.	29	4	41	0	.	100
CACNA1I	8911	broad.mit.edu;bcgsc.ca	37	22	40061623	40061623	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CACNA1I	NM_021096	exon22	c.A3972G	p.G1324G	.	.	277	10	331	0	.	135
CACNA2D1	781	bcgsc.ca	37	7	81589090	81589090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CACNA2D1	NM_000722	exon37	c.A3022G	p.S1008G	.	.	176	6	147	0	.	96
CAMK4	814	bcgsc.ca	37	5	110809056	110809056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CAMK4	NM_001744	exon8	c.T673C	p.W225R	.	.	143	5	108	0	.	386
CAPN13	92291	broad.mit.edu	37	2	30977174	30977174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CAPN13	NM_144575	exon9	c.G923A	p.R308Q	.	.	261	8	263	1	.	136
CARM1	10498	ucsc.edu	37	19	11027135	11027135	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CARM1	NM_199141	exon7	c.A900G	p.E300E	.	.	37	4	79	1	.	90
CASC1	55259	bcgsc.ca	37	12	25274739	25274739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CASC1	NM_001082972	exon11	c.T1361C	p.I454T	.	.	91	5	124	0	.	92
CASP8	841	hgsc.bcm.edu	37	2	202134252	202134252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CASP8	NM_001228	exon4	c.A325G	p.S109G	.	.	98	6	98	0	.	660
CASP8AP2	9994	bcgsc.ca	37	6	90566899	90566899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CASP8AP2	NM_001137667	exon6	c.A397G	p.I133V	.	.	71	4	69	0	.	24
CCDC135	84229	ucsc.edu;bcgsc.ca	37	16	57758704	57758704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCDC135	NM_032269	exon12	c.A1715G	p.K572R	.	.	40	4	54	0	.	90
CCDC150	284992	hgsc.bcm.edu	37	2	197521794	197521794	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001080539	exon4	c.A510G	p.E170E	.	.	98	4	148	0	.	.
CCDC168	643677	broad.mit.edu	37	13	103384547	103384547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001146197	exon4	c.A18500G	p.K6167R	.	.	2081	16	798	1	.	.
CCDC172	374355	bcgsc.ca	37	10	118084897	118084897	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_198515	exon3	c.T162A	p.S54S	.	.	85	4	153	0	.	.
CCDC53	51019	bcgsc.ca	37	12	102437904	102437904	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_016053	exon4	c.A303G	p.E101E	.	.	319	10	326	0	.	.
CCNB1	891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68467214	68467214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCNB1	NM_031966	exon4	c.G481A	p.G161R	.	.	286	88	237	0	.	650
CCNB3	85417	bcgsc.ca	37	X	50053098	50053098	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCNB3	NM_033031	exon5	c.A1929G	p.K643K	.	.	154	5	180	0	.	482
CCNE1	898	bcgsc.ca	37	19	30308063	30308063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CCNE1	NM_001238	exon5	c.T200C	p.V67A	.	.	163	5	222	0	.	1270
CD44	960	bcgsc.ca	37	11	35232958	35232958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CD44	NM_000610	exon14	c.T1772C	p.V591A	.	.	162	6	196	0	.	227
CD8A	925	hgsc.bcm.edu	37	2	87013062	87013062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CD8A	NM_001145873	exon9	c.T689C	p.L230P	.	.	106	4	105	0	.	91
CDH17	1015	broad.mit.edu	37	8	95188813	95188813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CDH17	NM_004063	exon5	c.T380C	p.L127P	.	.	1276	12	561	0	.	96
CDH22	64405	bcgsc.ca	37	20	44828143	44828143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CDH22	NM_021248	exon8	c.A1342G	p.T448A	.	.	85	6	87	1	.	95
CDKAL1	54901	bcgsc.ca	37	6	20781431	20781431	+	Silent	SNP	A	A	G	rs148570049	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CDKAL1	NM_017774	exon8	c.A573G	p.G191G	.	.	134	9	168	3	A|1.000;C|0.000	92
CEACAM1	634	bcgsc.ca	37	19	43016597	43016597	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CEACAM1	NM_001712	exon6	c.T1281C	p.P427P	.	.	118	5	109	0	.	515
CEACAM20	125931	bcgsc.ca	37	19	45026881	45026881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CEACAM20	NM_001102600	exon4	c.A533G	p.E178G	.	.	138	6	116	0	.	67
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104053878	104053878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CENPE	NM_001813	exon42	c.T6896A	p.V2299E	.	.	236	92	348	0	.	277
CENPK	64105	bcgsc.ca	37	5	64814309	64814309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CENPK	NM_001267038	exon11	c.A803G	p.H268R	.	.	231	6	241	1	.	90
CEP170	9859	bcgsc.ca	37	1	243319646	243319646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CEP170	NM_014812	exon14	c.T3788C	p.L1263P	.	.	175	6	229	0	.	93
CFH	3075	hgsc.bcm.edu	37	1	196705955	196705955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CFH	NM_000186	exon16	c.G2415T	p.M805I	.	.	105	6	59	0	.	566
CFTR	1080	bcgsc.ca	37	7	117307132	117307132	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CFTR	NM_000492	exon27	c.A4413G	p.T1471T	.	.	136	5	148	0	.	518
CHAMP1	283489	broad.mit.edu	37	13	115090363	115090363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001164144	exon3	c.A1046G	p.K349R	.	.	742	9	261	0	.	.
CHD5	26038	hgsc.bcm.edu;bcgsc.ca	37	1	6188597	6188597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHD5	NM_015557	exon24	c.C3692T	p.A1231V	.	.	79	4	153	0	.	719
CHFR	55743	bcgsc.ca	37	12	133419611	133419611	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHFR	NM_001161344	exon17	c.A1938G	p.K646K	.	.	78	4	105	0	.	227
CHRNA2	1135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27320514	27320514	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHRNA2	NM_000742	exon6	c.T1446C	p.S482S	.	.	117	26	120	0	.	91
CHRNB4	1143	bcgsc.ca	37	15	78921680	78921680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHRNB4	NM_000750	exon5	c.T967C	p.S323P	.	.	78	4	122	0	.	90
CHST4	10164	bcgsc.ca	37	16	71571140	71571140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CHST4	NM_001166395	exon2	c.T560C	p.L187P	.	.	60	4	84	1	.	90
CIAO1	9391	bcgsc.ca	37	2	96935052	96935052	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CIAO1	NM_004804	exon6	c.T738C	p.T246T	.	.	219	8	187	1	.	90
CKAP5	9793	bcgsc.ca	37	11	46804904	46804904	+	Silent	SNP	A	A	G	rs145673951		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CKAP5	NM_001008938	exon18	c.T2169C	p.A723A	.	.	71	5	74	0	A|1.000;G|0.000	92
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	122227423	122227423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CLASP1	NM_001207051	exon9	c.C826T	p.R276C	.	.	108	6	96	0	.	91
CLCNKB	1188	hgsc.bcm.edu	37	1	16377074	16377074	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CLCNKB	NM_000085	exon11	c.C1032T	p.A344A	.	.	74	4	102	0	.	91
CLIP2	7461	bcgsc.ca	37	7	73803487	73803487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CLIP2	NM_003388	exon13	c.A2618G	p.E873G	.	.	92	5	95	0	.	93
CLTC	1213	bcgsc.ca	37	17	57759029	57759029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CLTC	NM_004859	exon21	c.A3271G	p.N1091D	.	.	216	6	145	0	.	835
CNGA1	1259	hgsc.bcm.edu	37	4	47973031	47973031	+	Silent	SNP	G	G	A	rs28475840	byfrequency	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNGA1	NM_001142564	exon2	c.C87T	p.F29F	.	.	5	5	0	0	G|0.742;A|0.258	92
CNKSR1	10256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26514760	26514760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNKSR1	NM_006314	exon17	c.A1490G	p.Y497C	.	.	78	42	118	0	.	846
CNOT10	25904	hgsc.bcm.edu;bcgsc.ca	37	3	32811404	32811404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNOT10	NM_001256742	exon18	c.A2210G	p.E737G	.	.	82	4	93	0	.	91
CNOT3	4849	bcgsc.ca	37	19	54647771	54647771	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNOT3	NM_014516	exon6	c.A288G	p.R96R	.	.	107	5	154	0	.	93
CNTNAP5	129684	hgsc.bcm.edu	37	2	125204453	125204453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CNTNAP5	NM_130773	exon6	c.A857G	p.D286G	.	.	149	6	182	0	.	524
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165552127	165552127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COBLL1	NM_014900	exon12	c.A1889G	p.N630S	.	.	654	232	667	0	.	93
COG5	10466	bcgsc.ca	37	7	107198535	107198535	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COG5	NM_006348	exon2	c.A213G	p.E71E	.	.	122	5	172	0	.	93
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	103364262	103364262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL11A1	NM_080629	exon56	c.A4244T	p.K1415M	.	.	421	63	202	0	.	586
COL16A1	1307	hgsc.bcm.edu;bcgsc.ca	37	1	32149600	32149600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL16A1	NM_001856	exon33	c.A2288G	p.Q763R	.	.	105	5	164	0	.	98
COL6A6	131873	hgsc.bcm.edu;bcgsc.ca	37	3	130285737	130285737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	COL6A6	NM_001102608	exon4	c.A1474G	p.K492E	.	.	123	5	148	0	.	76
CORO1A	11151	bcgsc.ca	37	16	30197952	30197952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CORO1A	NM_001193333	exon4	c.T232C	p.C78R	.	.	60	4	71	0	.	226
CORO6	84940	bcgsc.ca	37	17	27948325	27948325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CORO6	NM_032854	exon1	c.T115C	p.F39L	.	.	65	4	93	0	.	90
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	7317	7317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	ENST00000361624	exon1	c.A1414G	p.I472V	.	.	246	78	371	1	.	.
CPS1	1373	bcgsc.ca	37	2	211456652	211456652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPS1	NM_001122633	exon11	c.T1063C	p.W355R	.	.	150	5	126	0	.	162
CPS1	1373	hgsc.bcm.edu;bcgsc.ca	37	2	211523405	211523405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPS1	NM_001122633	exon32	c.A3767G	p.D1256G	.	.	91	4	121	0	.	162
CPSF4L	642843	bcgsc.ca	37	17	71257866	71257866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPSF4L	NM_001129885	exon1	c.A92G	p.Q31R	.	.	138	5	84	0	.	68
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50209501	50209501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CPT1C	NM_001199752	exon12	c.C1174A	p.Q392K	.	.	67	15	49	0	.	92
CSMD2	114784	hgsc.bcm.edu	37	1	34035040	34035040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CSMD2	NM_052896	exon53	c.G8071A	p.V2691M	.	.	77	4	98	0	.	103
CSRP2	1466	bcgsc.ca	37	12	77259978	77259978	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CSRP2	NM_001321	exon2	c.A63G	p.E21E	.	.	140	5	105	0	.	91
CTAGE5	4253	bcgsc.ca	37	14	39816919	39816919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CTAGE5	NM_001247989	exon22	c.G1972A	p.G658R	.	.	214	7	248	0	.	90
CTNNA1	1495	hgsc.bcm.edu	37	5	138260967	138260967	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CTNNA1	NM_001903	exon13	c.A1770G	p.Q590Q	.	.	97	5	75	0	.	671
CTSK	1513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150778691	150778691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CTSK	NM_000396	exon3	c.A130G	p.I44V	.	.	341	258	133	1	.	91
CTSW	1521	bcgsc.ca	37	11	65650760	65650760	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CTSW	NM_001335	exon9	c.G885A	p.L295L	.	.	81	4	88	0	.	90
CWF19L2	143884	broad.mit.edu	37	11	107219762	107219762	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CWF19L2	NM_152434	exon14	c.C2103T	p.P701P	.	.	337	7	349	0	.	68
CXCR4	7852	hgsc.bcm.edu	37	2	136872711	136872711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CXCR4	NM_001008540	exon1	c.T799C	p.S267P	.	.	80	4	109	0	.	1082
CYP27C1	339761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	127958787	127958787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CYP27C1	NM_001001665	exon3	c.A299C	p.Y100S	.	.	88	31	94	0	.	90
CYP2C18	1562	bcgsc.ca	37	10	96484252	96484252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	CYP2C18	NM_000772	exon7	c.A1111G	p.T371A	.	.	103	5	187	0	.	95
CYP4Z2P	163720	bcgsc.ca	37	1	47364658	47364658	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NR_002788	exon3	c.219-2A>G	.	.	.	234	7	109	0	.	.
DAPK1	1612	bcgsc.ca	37	9	90254285	90254285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DAPK1	NM_004938	exon5	c.T440C	p.L147P	.	.	166	5	222	0	.	359
DBF4B	80174	bcgsc.ca	37	17	42828185	42828185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DBF4B	NM_145663	exon14	c.A1412G	p.E471G	.	.	115	5	103	0	.	227
DBR1	51163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137880850	137880850	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DBR1	NM_016216	exon8	c.A1516T	p.T506S	.	.	540	194	602	0	.	90
DCUN1D1	54165	hgsc.bcm.edu	37	3	182665120	182665120	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DCUN1D1	NM_020640	exon6	c.A606G	p.E202E	.	.	90	4	107	0	.	91
DDC	1644	bcgsc.ca	37	7	50537801	50537801	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DDC	NM_001082971	exon12	c.A1110G	p.G370G	.	.	115	5	118	0	.	92
DDX6	1656	bcgsc.ca	37	11	118651893	118651893	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DDX6	NM_004397	exon3	c.A201G	p.K67K	.	.	155	5	175	0	.	659
DGKK	139189	bcgsc.ca	37	X	50146158	50146158	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DGKK	.	.	.	.	.	.	90	4	109	0	.	227
DHX33	56919	bcgsc.ca	37	17	5347674	5347674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DHX33	NM_020162	exon12	c.T1975C	p.F659L	.	.	120	7	116	0	.	228
DHX58	79132	bcgsc.ca	37	17	40253852	40253852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DHX58	NM_024119	exon14	c.T1964C	p.V655A	.	.	160	7	139	0	.	90
DISP2	85455	bcgsc.ca	37	15	40660411	40660411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DISP2	NM_033510	exon8	c.A2098G	p.I700V	.	.	28	4	30	0	.	92
DMXL2	23312	bcgsc.ca	37	15	51750969	51750969	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DMXL2	NM_001174116	exon34	c.A7950G	p.P2650P	.	.	116	5	205	1	.	99
DMXL2	23312	bcgsc.ca	37	15	51772147	51772147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DMXL2	NM_001174116	exon25	c.A6754G	p.K2252E	.	.	70	4	189	1	.	99
DNAH1	25981	hgsc.bcm.edu	37	3	52429610	52429610	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNAH1	NM_015512	exon70	c.A11175G	p.K3725K	.	.	93	4	126	0	.	67
DNAH6	1768	bcgsc.ca	37	2	84932754	84932754	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNAH6	NM_001370	exon52	c.A8610G	p.K2870K	.	.	231	6	256	1	.	69
DNAH6	1768	hgsc.bcm.edu	37	2	84949784	84949784	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNAH6	NM_001370	exon60	c.A9828G	p.E3276E	.	.	97	4	112	0	.	69
DNAH7	56171	bcgsc.ca	37	2	196722337	196722337	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNAH7	NM_018897	exon44	c.A8178G	p.T2726T	.	.	159	6	174	0	.	102
DNAH7	56171	hgsc.bcm.edu	37	2	196750867	196750867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNAH7	NM_018897	exon34	c.G5536A	p.E1846K	.	.	88	4	100	0	.	102
DNAJC18	202052	bcgsc.ca	37	5	138755819	138755819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNAJC18	NM_152686	exon7	c.T875C	p.L292P	.	.	237	6	213	0	.	227
DND1	373863	hgsc.bcm.edu;bcgsc.ca	37	5	140052972	140052972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DND1	NM_194249	exon2	c.T26C	p.L9P	.	.	121	5	97	0	.	90
DNHD1	144132	bcgsc.ca	37	11	6520190	6520190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DNHD1	NM_173589	exon2	c.A745G	p.R249G	.	.	79	4	82	0	.	24
DOM3Z	1797	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31938796	31938796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DOM3Z	NM_005510	exon3	c.T485C	p.L162P	.	.	77	32	86	1	.	90
DPCD	25911	bcgsc.ca	37	10	103368605	103368605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DPCD	NM_015448	exon5	c.T418C	p.F140L	.	.	75	4	94	0	.	69
DPPA2	151871	hgsc.bcm.edu;bcgsc.ca	37	3	109028179	109028179	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DPPA2	NM_138815	exon5	c.182-2A>G	.	.	.	124	5	210	0	.	93
DSCAML1	57453	bcgsc.ca	37	11	117403141	117403141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DSCAML1	NM_020693	exon4	c.A788G	p.K263R	.	.	235	6	213	1	.	159
DSEL	92126	bcgsc.ca	37	18	65178224	65178224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DSEL	NM_032160	exon2	c.C3652A	p.P1218T	.	.	219	6	236	2	.	157
DYNC1H1	1778	bcgsc.ca	37	14	102446238	102446238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DYNC1H1	NM_001376	exon4	c.A701G	p.D234G	.	.	142	6	172	0	.	98
DYRK1B	9149	bcgsc.ca	37	19	40319046	40319046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	DYRK1B	NM_006483	exon6	c.T698C	p.L233P	.	.	95	4	107	0	.	337
E2F6	1876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11587894	11587894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	E2F6	NM_198256	exon6	c.A658G	p.I220V	.	.	141	55	265	0	.	838
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233344956	233344956	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ECEL1	NM_004826	exon18	c.G2235T	p.L745L	.	.	102	49	143	0	.	90
EDNRB	1910	bcgsc.ca	37	13	78492254	78492254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EDNRB	NM_001201397	exon2	c.T725C	p.V242A	.	.	65	4	108	0	.	522
EFHC2	80258	bcgsc.ca	37	X	44108073	44108073	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EFHC2	NM_025184	exon6	c.T948C	p.D316D	.	.	87	4	98	1	.	135
EHMT1	79813	bcgsc.ca	37	9	140728902	140728902	+	Missense_Mutation	SNP	G	G	A	rs200829345	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EHMT1	NM_024757	exon26	c.G3642A	p.M1214I	.	.	75	4	79	0	G|0.999;C|0.001	154
EIF2B5	8893	bcgsc.ca	37	3	183857939	183857939	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EIF2B5	NM_003907	exon6	c.T837C	p.N279N	.	.	140	5	178	0	.	95
EIF4G1	1981	hgsc.bcm.edu	37	3	184049876	184049876	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EIF4G1	NM_001194946	exon33	c.4639+2T>A	.	.	.	65	4	88	0	.	344
ENO1	2023	hgsc.bcm.edu;bcgsc.ca	37	1	8930511	8930511	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ENO1	NM_001428	exon4	c.G240A	p.K80K	.	.	54	4	85	0	.	652
ENO2	2026	bcgsc.ca	37	12	7025635	7025635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ENO2	NM_001975	exon3	c.T140C	p.L47P	.	.	174	5	189	1	.	226
ENTHD1	150350	bcgsc.ca	37	22	40217023	40217023	+	Silent	SNP	T	T	C	rs138393426	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ENTHD1	NM_152512	exon5	c.A807G	p.E269E	.	.	90	4	101	0	T|1.000;G|0.000	93
EP300	2033	bcgsc.ca	37	22	41554427	41554427	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EP300	NM_001429	exon19	c.T3513C	p.S1171S	.	.	163	6	171	0	.	2011
EPHA10	284656	hgsc.bcm.edu;bcgsc.ca	37	1	38186511	38186511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EPHA10	NM_001099439	exon12	c.A2152G	p.T718A	.	.	84	5	94	0	.	1246
EPHB6	2051	bcgsc.ca	37	7	142567596	142567596	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EPHB6	NM_004445	exon17	c.A2484G	p.A828A	.	.	198	6	285	1	.	1489
EPN3	55040	bcgsc.ca	37	17	48618869	48618869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EPN3	NM_017957	exon9	c.G1399T	p.G467C	.	.	70	5	64	0	.	91
ERGIC3	51614	bcgsc.ca	37	20	34143805	34143805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ERGIC3	NM_198398	exon10	c.T734C	p.I245T	.	.	148	5	176	0	.	585
EXOC3L2	90332	bcgsc.ca	37	19	45735109	45735109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXOC3L2	NM_138568	exon2	c.T2C	p.M1T	.	.	70	4	53	1	.	91
EXOC4	60412	bcgsc.ca	37	7	132973696	132973696	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXOC4	NM_021807	exon3	c.A297G	p.S99S	.	.	80	4	79	0	.	159
EXOC4	60412	bcgsc.ca	37	7	133160204	133160204	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXOC4	NM_021807	exon8	c.A1305G	p.Q435Q	.	.	98	5	114	0	.	159
EXTL3	2137	bcgsc.ca	37	8	28573715	28573715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXTL3	NM_001440	exon3	c.G139T	p.A47S	.	.	129	5	119	0	.	92
EXTL3	2137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28574774	28574774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	EXTL3	NM_001440	exon3	c.T1198C	p.C400R	.	.	103	43	88	0	.	92
FAAH2	158584	bcgsc.ca	37	X	57515236	57515236	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAAH2	NM_174912	exon11	c.A1470G	p.G490G	.	.	60	5	43	0	.	133
FAM122B	159090	bcgsc.ca	37	X	133930145	133930145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM122B	NM_001170756	exon1	c.G91A	p.G31R	.	.	60	4	49	0	.	130
FAM180A	389558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135421867	135421867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM180A	NM_205855	exon2	c.G157A	p.E53K	.	.	75	38	124	0	.	92
FAM184B	27146	hgsc.bcm.edu;bcgsc.ca	37	4	17641002	17641002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM184B	NM_015688	exon14	c.A2537G	p.Q846R	.	.	85	4	105	0	.	23
FAM193B	54540	hgsc.bcm.edu	37	5	176951436	176951436	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001190946	exon6	c.A2046G	p.K682K	.	.	100	5	129	0	.	.
FAM47A	158724	broad.mit.edu;bcgsc.ca	37	X	34148612	34148612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM47A	NM_203408	exon1	c.T1784C	p.V595A	.	.	147	9	113	1	.	134
FAM71D	161142	ucsc.edu;mdanderson.org	37	14	67671395	67671395	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM71D	NM_173526	exon5	c.G501A	p.W167X	.	.	228	86	270	0	.	23
FAM89A	375061	ucsc.edu;bcgsc.ca	37	1	231155652	231155652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAM89A	NM_198552	exon2	c.T512C	p.V171A	.	.	43	4	77	0	.	90
FASTK	10922	bcgsc.ca	37	7	150776623	150776623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FASTK	NM_006712	exon2	c.A469G	p.T157A	.	.	272	9	262	2	.	359
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187541014	187541014	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FAT1	NM_005245	exon10	c.G6726A	p.L2242L	.	.	76	4	168	0	.	34
FBN3	84467	bcgsc.ca	37	19	8194142	8194142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FBN3	NM_032447	exon16	c.T2152C	p.S718P	.	.	68	5	105	0	.	100
FBP1	2203	bcgsc.ca	37	9	97401475	97401475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FBP1	NM_000507	exon1	c.A118G	p.T40A	.	.	128	5	152	0	.	226
FBXO11	80204	hgsc.bcm.edu	37	2	48037548	48037548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FBXO11	NM_001190274	exon19	c.G2245T	p.D749Y	.	.	85	4	99	0	.	659
FBXW4	6468	ucsc.edu;bcgsc.ca	37	10	103436144	103436144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FBXW4	NM_022039	exon2	c.A310G	p.R104G	.	.	45	4	62	0	.	226
FGD5	152273	hgsc.bcm.edu;bcgsc.ca	37	3	14862587	14862587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGD5	NM_152536	exon1	c.A2009G	p.H670R	.	.	123	5	148	0	.	231
FGF6	2251	ucsc.edu;bcgsc.ca	37	12	4554699	4554699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGF6	NM_020996	exon1	c.G38A	p.R13Q	.	.	29	4	24	0	.	659
FGFR3	2261	hgsc.bcm.edu	37	4	1805419	1805419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FGFR3	NM_000142	exon8	c.A931G	p.T311A	.	.	68	5	127	0	.	9542
FHL1	2273	bcgsc.ca	37	X	135291477	135291477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FHL1	NM_001159702	exon7	c.T764C	p.L255S	.	.	58	4	56	0	.	130
FHL3	2275	bcgsc.ca	37	1	38463117	38463117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FHL3	NM_004468	exon6	c.A803G	p.D268G	.	.	74	5	84	3	.	90
FHL3	2275	hgsc.bcm.edu	37	1	38463119	38463119	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FHL3	NM_004468	exon6	c.A801G	p.G267G	.	.	76	4	86	0	.	90
FIGN	55137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164466794	164466794	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FIGN	NM_018086	exon3	c.G1548T	p.T516T	.	.	148	55	175	0	.	156
FLG2	388698	broad.mit.edu	37	1	152323838	152323838	+	Missense_Mutation	SNP	C	C	T	rs149503979	byfrequency	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FLG2	NM_001014342	exon3	c.G6424A	p.G2142R	.	.	1866	12	758	2	C|1.000;T|0.000	151
FLJ16171	0	bcgsc.ca	37	5	174350936	174350936	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FLJ16171	.	.	.	.	.	.	222	6	228	2	.	67
FLNA	2316	bcgsc.ca	37	X	153596284	153596284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FLNA	NM_001456	exon3	c.T548C	p.L183P	.	.	60	5	89	0	.	599
FLNC	2318	bcgsc.ca	37	7	128483581	128483581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FLNC	NM_001127487	exon18	c.A2761G	p.I921V	.	.	81	4	102	0	.	141
FLYWCH1	84256	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2980006	2980006	+	Missense_Mutation	SNP	A	A	G	rs146665306		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FLYWCH1	NM_020912	exon3	c.A320G	p.D107G	.	.	50	18	70	0	A|0.997;G|0.003	22
FMN2	56776	hgsc.bcm.edu	37	1	240370245	240370245	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FMN2	NM_020066	exon5	c.T2133C	p.L711L	.	.	73	4	142	0	.	145
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171965470	171965470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FNDC3B	NM_001135095	exon5	c.C412T	p.H138Y	.	.	263	101	289	0	.	155
FOXP2	93986	bcgsc.ca	37	7	114298120	114298120	+	Splice_Site	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FOXP2	NM_014491	exon11	c.1267-1G>T	.	.	.	76	4	63	0	.	295
FREM1	158326	bcgsc.ca	37	9	14813034	14813034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FREM1	NM_144966	exon17	c.T2669C	p.V890A	.	.	74	4	86	1	.	138
FRG1B	284802	bcgsc.ca	37	20	29625891	29625891	+	RNA	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FRG1B	.	.	.	.	.	.	464	19	629	10	.	22
FRMD7	90167	bcgsc.ca	37	X	131228081	131228081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FRMD7	NM_194277	exon5	c.A371G	p.H124R	.	.	28	4	54	0	.	228
FTCD	10841	bcgsc.ca	37	21	47557195	47557195	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FTCD	NM_206965	exon13	c.C1497T	p.L499L	.	.	81	4	78	0	.	92
FTMT	94033	hgsc.bcm.edu;bcgsc.ca	37	5	121187671	121187671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	FTMT	NM_177478	exon1	c.T13C	p.F5L	.	.	76	4	60	0	.	91
GAB1	2549	hgsc.bcm.edu;bcgsc.ca	37	4	144378870	144378870	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GAB1	NM_207123	exon7	c.T1623C	p.G541G	.	.	94	5	107	0	.	1146
GABARAP	11337	bcgsc.ca	37	17	7145590	7145610	+	In_Frame_Del	DEL	CTTCTCGCCCTCAGAGCGGCG	CTTCTCGCCCTCAGAGCGGCG	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	CTTCTCGCCCTCAGAGCGGCG	CTTCTCGCCCTCAGAGCGGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABARAP	NM_007278	exon1	c.40_60del	p.14_20del	.	.	97	6	138	0	.	90
GABRA5	2558	bcgsc.ca	37	15	27188474	27188474	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRA5	NM_001165037	exon10	c.C990T	p.F330F	.	.	89	4	130	1	.	91
GABRG2	2566	hgsc.bcm.edu;bcgsc.ca	37	5	161576259	161576259	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRG2	NM_198903	exon9	c.1188delG	p.L396fs	.	.	924	222	822	0	.	95
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161580269	161580269	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GABRG2	NM_198903	exon11	c.G1443A	p.R481R	.	.	718	200	589	0	.	95
GAD1	2571	hgsc.bcm.edu	37	2	171710458	171710458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GAD1	NM_000817	exon14	c.G1339A	p.D447N	.	.	99	5	134	0	.	91
GADD45A	1647	bcgsc.ca	37	1	68151204	68151204	+	Silent	SNP	A	A	G	rs148653649	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GADD45A	NM_001199741	exon1	c.A27G	p.G9G	.	.	173	17	127	12	A|1.000;C|0.000	227
GALNTL6	442117	hgsc.bcm.edu;bcgsc.ca	37	4	173730521	173730521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GALNTL6	NM_001034845	exon6	c.A563G	p.K188R	.	.	97	4	171	0	.	137
GALP	85569	bcgsc.ca	37	19	56693598	56693598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GALP	NM_033106	exon4	c.T194C	p.I65T	.	.	104	5	129	0	.	90
GCK	2645	bcgsc.ca	37	7	44190603	44190603	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GCK	NM_033507	exon4	c.C438A	p.P146P	.	.	180	6	201	0	.	416
GDAP1L1	78997	bcgsc.ca	37	20	42891911	42891911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GDAP1L1	NM_001256737	exon4	c.C646T	p.H216Y	.	.	89	6	100	0	.	153
GFM1	85476	bcgsc.ca	37	3	158363428	158363428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GFM1	NM_024996	exon2	c.A92G	p.K31R	.	.	250	18	209	6	.	93
GHSR	2693	hgsc.bcm.edu;bcgsc.ca	37	3	172163000	172163000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GHSR	NM_198407	exon2	c.T1052C	p.L351P	.	.	78	4	84	0	.	501
GJA1	2697	bcgsc.ca	37	6	121768339	121768339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GJA1	NM_000165	exon2	c.G346A	p.A116T	.	.	180	6	207	1	.	92
GNB5	10681	bcgsc.ca	37	15	52416696	52416696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GNB5	NM_016194	exon12	c.T1150C	p.S384P	.	.	60	4	124	0	.	227
GPM6B	2824	bcgsc.ca	37	X	13825860	13825860	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPM6B	NM_001001995	exon2	c.C90T	p.G30G	.	.	170	6	177	0	.	130
GPN2	54707	bcgsc.ca	37	1	27215550	27215550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPN2	NM_018066	exon2	c.T478C	p.C160R	.	.	135	5	237	0	.	90
GPR112	139378	bcgsc.ca	37	X	135426676	135426676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPR112	NM_153834	exon6	c.T811C	p.S271P	.	.	123	5	134	0	.	183
GPR148	344561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131487061	131487061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPR148	NM_207364	exon1	c.G337A	p.G113S	.	.	140	7	166	0	.	91
GPR158	57512	broad.mit.edu;bcgsc.ca	37	10	25839948	25839948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPR158	NM_020752	exon6	c.T1448C	p.L483P	.	.	609	12	640	0	.	141
GPR55	9290	hgsc.bcm.edu	37	2	231775064	231775064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPR55	NM_005683	exon2	c.T614C	p.I205T	.	.	92	5	96	0	.	91
GPT	2875	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145730179	145730179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPT	NM_005309	exon3	c.A278T	p.D93V	.	.	229	22	175	0	.	91
GPX2	2877	bcgsc.ca	37	14	65409338	65409338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GPX2	.	.	.	.	.	.	135	5	117	0	.	69
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94006348	94006348	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GRID2	NM_001510	exon3	c.T447G	p.P149P	.	.	136	53	193	0	.	159
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146720308	146720308	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GRM1	NM_000838	exon8	c.A2133T	p.S711S	.	.	194	72	207	0	.	1080
GSDMD	79792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644902	144644902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSDMD	NM_001166237	exon14	c.T1283C	p.L428P	.	.	114	81	95	1	.	90
GSDMD	79792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644913	144644913	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSDMD	NM_001166237	exon14	c.T1294A	p.W432R	.	.	131	92	113	0	.	90
GSG1	83445	bcgsc.ca	37	12	13242204	13242204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GSG1	NM_001080554	exon3	c.T371C	p.L124P	.	.	188	6	211	0	.	90
GTF3C1	2975	bcgsc.ca	37	16	27556845	27556845	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GTF3C1	NM_001520	exon3	c.222-1G>T	.	.	.	82	4	120	0	.	94
GTF3C3	9330	hgsc.bcm.edu	37	2	197664292	197664292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	GTF3C3	NM_001206774	exon1	c.A44G	p.K15R	.	.	94	4	102	0	.	97
HADHB	3032	bcgsc.ca	37	2	26505886	26505886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HADHB	NM_000183	exon12	c.T1028C	p.V343A	.	.	251	7	302	0	.	154
HAL	3034	bcgsc.ca	37	12	96387565	96387565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HAL	NM_001258334	exon7	c.C536A	p.P179H	.	.	169	7	167	0	.	93
HAS3	3038	bcgsc.ca	37	16	69143929	69143929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HAS3	NM_138612	exon2	c.A631G	p.I211V	.	.	51	4	83	0	.	90
HAUS6	54801	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19070270	19070270	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HAUS6	NM_017645	exon12	c.T1323C	p.N441N	.	.	482	175	607	2	.	92
HCN3	57657	bcgsc.ca	37	1	155255677	155255677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HCN3	NM_020897	exon6	c.T1399C	p.F467L	.	.	295	8	120	0	.	154
HDLBP	3069	bcgsc.ca	37	2	242189345	242189345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HDLBP	NM_005336	exon12	c.A1423G	p.S475G	.	.	128	5	112	0	.	290
HDLBP	3069	broad.mit.edu;ucsc.edu	37	2	242174540	242174540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HDLBP	NM_005336	exon23	c.A3140G	p.D1047G	.	.	45	6	51	0	.	290
HECTD1	25831	bcgsc.ca	37	14	31576893	31576893	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HECTD1	NM_015382	exon37	c.A6498G	p.E2166E	.	.	91	5	121	1	.	570
HEG1	57493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124720775	124720775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HEG1	NM_020733	exon11	c.G3438C	p.R1146S	.	.	241	77	247	1	.	70
HERC1	8925	bcgsc.ca	37	15	63986198	63986198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HERC1	NM_003922	exon30	c.A5639G	p.D1880G	.	.	219	6	267	2	.	666
HID1	283987	ucsc.edu	37	17	72948084	72948084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_030630	exon18	c.A2219C	p.H740P	.	.	144	29	100	8	.	.
HIPK3	10114	bcgsc.ca	37	11	33374999	33374999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HIPK3	NM_005734	exon17	c.T3533C	p.I1178T	.	.	211	6	218	1	.	336
HJURP	55355	hgsc.bcm.edu	37	2	234756078	234756078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HJURP	NM_018410	exon5	c.T367C	p.S123P	.	.	135	6	164	0	.	69
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75113635	75113635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HK2	NM_000189	exon15	c.G2054T	p.C685F	.	.	129	50	143	0	.	252
HMCN1	83872	hgsc.bcm.edu	37	1	186064493	186064493	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HMCN1	NM_031935	exon68	c.A10413G	p.R3471R	.	.	168	7	78	0	.	113
HMGCS2	3158	bcgsc.ca	37	1	120307215	120307215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HMGCS2	NM_005518	exon2	c.A139G	p.T47A	.	.	231	6	124	1	.	92
HNRNPCL1	343069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12908011	12908011	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HNRNPCL1	NM_001013631	exon2	c.G132A	p.A44A	.	.	301	60	495	0	.	68
HP	3240	broad.mit.edu;bcgsc.ca	37	16	72090074	72090074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HP	NM_005143	exon2	c.T20C	p.V7A	.	.	175	6	301	0	.	22
HSPG2	3339	hgsc.bcm.edu	37	1	22191789	22191789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HSPG2	NM_005529	exon35	c.A4384G	p.M1462V	.	.	95	4	165	0	.	141
HUS1	3364	bcgsc.ca	37	7	48018021	48018021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	HUS1	NM_004507	exon3	c.T350C	p.V117A	.	.	143	5	158	0	.	1109
IAH1	285148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9628439	9628439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IAH1	NM_001039613	exon6	c.T728G	p.L243R	.	.	146	57	162	1	.	22
IDE	3416	bcgsc.ca	37	10	94268649	94268649	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IDE	NM_004969	exon8	c.898-2A>G	.	.	.	60	4	122	0	.	92
IFIT1B	439996	bcgsc.ca	37	10	91143747	91143747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IFIT1B	NM_001010987	exon2	c.A677G	p.K226R	.	.	63	4	137	0	.	90
IFT57	55081	hgsc.bcm.edu	37	3	107940994	107940994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IFT57	NM_018010	exon1	c.A176G	p.E59G	.	.	95	5	114	0	.	227
IGBP1P1	280655	bcgsc.ca	37	14	35409564	35409564	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	86	5	110	0	.	.
IGHMBP2	3508	bcgsc.ca	37	11	68675786	68675786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IGHMBP2	NM_002180	exon3	c.A430G	p.T144A	.	.	80	4	132	0	.	90
IGSF10	285313	hgsc.bcm.edu	37	3	151154684	151154684	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IGSF10	NM_178822	exon6	c.T7665C	p.V2555V	.	.	144	6	170	0	.	102
IGSF22	283284	bcgsc.ca	37	11	18741383	18741383	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IGSF22	NM_173588	exon7	c.G576A	p.L192L	.	.	234	7	253	0	.	140
IKBKB	3551	bcgsc.ca	37	8	42183575	42183575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IKBKB	NM_001556	exon20	c.T2074C	p.S692P	.	.	77	9	75	1	.	1164
IL17RE	132014	hgsc.bcm.edu	37	3	9944675	9944675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IL17RE	NM_153483	exon2	c.T179C	p.L60P	.	.	160	7	136	0	.	90
IL1RAPL2	26280	bcgsc.ca	37	X	104512144	104512144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IL1RAPL2	NM_017416	exon5	c.A617G	p.E206G	.	.	235	6	271	0	.	194
ILF3	3609	bcgsc.ca	37	19	10794120	10794120	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ILF3	NM_017620	exon15	c.C1765T	p.L589L	.	.	86	4	136	0	.	93
INTS4	92105	bcgsc.ca	37	11	77672114	77672114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	INTS4	NM_033547	exon5	c.A542G	p.E181G	.	.	273	10	250	0	.	92
IP6K1	9807	hgsc.bcm.edu	37	3	49775655	49775655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IP6K1	NM_153273	exon3	c.A424G	p.T142A	.	.	120	5	118	0	.	265
IQCC	55721	hgsc.bcm.edu;bcgsc.ca	37	1	32673299	32673299	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IQCC	NM_001160042	exon5	c.G1257A	p.R419R	.	.	72	4	139	0	.	94
IQCD	115811	bcgsc.ca	37	12	113645412	113645412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	IQCD	NM_138451	exon2	c.T560C	p.L187P	.	.	158	6	232	1	.	91
ISLR2	57611	bcgsc.ca	37	15	74426349	74426349	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ISLR2	NM_001130138	exon4	c.A1254G	p.K418K	.	.	65	4	66	0	.	90
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145530929	145530929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ITGA10	NM_003637	exon7	c.G661T	p.D221Y	.	.	482	23	175	0	.	231
ITGAM	3684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31284710	31284710	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ITGAM	NM_000632	exon8	c.C729T	p.N243N	.	.	102	18	106	0	.	226
JAG1	182	bcgsc.ca	37	20	10639344	10639344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	JAG1	NM_000214	exon4	c.T466C	p.S156P	.	.	72	5	107	0	.	1273
JAK1	3716	broad.mit.edu	37	1	65303645	65303645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	JAK1	NM_002227	exon22	c.T3110C	p.V1037A	.	.	430	7	278	0	.	3900
JAK2	3717	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5126358	5126358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	JAK2	NM_004972	exon24	c.A3203G	p.D1068G	.	.	138	45	139	0	.	75307
KATNA1	11104	bcgsc.ca	37	6	149944290	149944290	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KATNA1	NM_007044	exon4	c.A450G	p.K150K	.	.	176	6	235	1	.	91
KCNA4	3739	bcgsc.ca	37	11	30033120	30033120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNA4	NM_002233	exon2	c.A1106G	p.D369G	.	.	144	6	146	0	.	517
KCNAB1	7881	bcgsc.ca	37	3	156234091	156234091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNAB1	NM_172160	exon11	c.T898C	p.C300R	.	.	83	4	99	1	.	94
KCNB2	9312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73849371	73849371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNB2	NM_004770	exon3	c.T1781A	p.I594N	.	.	134	94	66	0	.	158
KCNK1	3775	bcgsc.ca	37	1	233802345	233802345	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNK1	NM_002245	exon2	c.T360C	p.Y120Y	.	.	129	5	235	0	.	90
KCNMA1	3778	bcgsc.ca	37	10	78704594	78704594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNMA1	NM_001161352	exon23	c.T2839C	p.S947P	.	.	88	4	157	0	.	93
KCNS3	3790	bcgsc.ca	37	2	18112947	18112947	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCNS3	NM_002252	exon3	c.A672G	p.G224G	.	.	177	14	204	3	.	94
KCTD3	51133	bcgsc.ca	37	1	215753293	215753293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KCTD3	NM_016121	exon8	c.C577T	p.H193Y	.	.	158	6	243	0	.	93
KDELR1	10945	bcgsc.ca	37	19	48894540	48894540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KDELR1	NM_006801	exon1	c.T76C	p.S26P	.	.	81	5	94	0	.	90
KDM1A	23028	hgsc.bcm.edu	37	1	23409728	23409728	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KDM1A	NM_001009999	exon21	c.A2502G	p.T834T	.	.	84	5	199	0	.	206
KDM6B	23135	bcgsc.ca	37	17	7750726	7750726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KDM6B	NM_001080424	exon10	c.A1213G	p.S405G	.	.	42	4	57	0	.	205
KHDC3L	154288	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	74072866	74072866	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001017361	exon2	c.T218A	p.L73X	.	.	96	38	108	0	.	.
KIAA0319L	79932	bcgsc.ca	37	1	35900605	35900605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA0319L	NM_024874	exon21	c.T3040C	p.F1014L	.	.	232	8	300	0	.	92
KIAA0586	9786	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58937380	58937380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA0586	NM_001244189	exon19	c.T2651A	p.V884D	.	.	166	25	190	0	.	23
KIAA1324L	222223	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86569424	86569424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA1324L	NM_001142749	exon6	c.T749C	p.L250P	.	.	217	69	246	1	.	97
KIAA1586	57691	bcgsc.ca	37	6	56917842	56917842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIAA1586	NM_020931	exon4	c.A545G	p.K182R	.	.	92	4	117	0	.	44
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72342619	72342619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIF19	NM_153209	exon8	c.A880C	p.K294Q	.	.	157	84	152	0	.	90
KIF1B	23095	bcgsc.ca	37	1	10431320	10431320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIF1B	NM_015074	exon43	c.A4808G	p.K1603R	.	.	100	6	204	1	.	93
KIF21B	23046	broad.mit.edu	37	1	200950086	200950086	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KIF21B	NM_001252102	exon30	c.3979+2T>C	.	.	.	137	5	80	0	.	96
KLHDC9	126823	hgsc.bcm.edu	37	1	161068368	161068368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KLHDC9	NM_001007255	exon1	c.T43C	p.W15R	.	.	345	17	79	0	.	22
KLHL34	257240	broad.mit.edu	37	X	21675351	21675351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KLHL34	NM_153270	exon1	c.C556T	p.P186S	.	.	9	8	12	0	.	131
KPNA1	3836	bcgsc.ca	37	3	122146409	122146409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KPNA1	NM_002264	exon13	c.T1405C	p.C469R	.	.	98	6	91	0	.	226
KPNA6	23633	hgsc.bcm.edu;bcgsc.ca	37	1	32631794	32631794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KPNA6	NM_012316	exon11	c.T1079C	p.I360T	.	.	91	4	142	0	.	226
KRT4	3851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53202117	53202117	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KRT4	NM_002272	exon6	c.C1086A	p.I362I	.	.	273	42	290	0	.	96
KRTAP4-11	653240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39274012	39274012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_033059	exon1	c.C556T	p.R186C	.	.	288	158	190	0	.	.
KRTAP4-6	81871	bcgsc.ca	37	17	39296482	39296482	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_030976	exon1	c.A258G	p.V86V	.	.	97	13	84	2	.	.
KRTAP5-11	440051	bcgsc.ca	37	11	71293828	71293834	+	Frame_Shift_Del	DEL	GAGCCAC	GAGCCAC	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	GAGCCAC	GAGCCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	KRTAP5-11	NM_001005405	exon1	c.50_56del	p.17_19del	.	.	237	7	219	1	.	90
LAMB2	3913	hgsc.bcm.edu;bcgsc.ca	37	3	49169091	49169091	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LAMB2	NM_002292	exon5	c.C525T	p.Y175Y	.	.	92	5	68	0	.	93
LAP3	51056	hgsc.bcm.edu	37	4	17586728	17586728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LAP3	NM_015907	exon6	c.A673G	p.S225G	.	.	99	4	110	0	.	90
LARP1B	55132	hgsc.bcm.edu	37	4	129127685	129127685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LARP1B	NM_018078	exon18	c.C2412A	p.Y804X	.	.	76	4	103	0	.	68
LCE1F	353137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152748869	152748869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LCE1F	NM_178354	exon1	c.C22A	p.Q8K	.	.	841	640	260	0	.	68
LCE3D	84648	broad.mit.edu	37	1	152552367	152552367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LCE3D	NM_032563	exon2	c.T46C	p.C16R	.	.	1017	14	328	0	.	68
LDHB	3945	bcgsc.ca	37	12	21790111	21790111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LDHB	NM_002300	exon7	c.A731G	p.K244R	.	.	85	4	102	0	.	290
LDLRAD3	143458	bcgsc.ca	37	11	36057791	36057791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LDLRAD3	NM_174902	exon2	c.A185G	p.K62R	.	.	75	4	82	0	.	90
LEAP2	116842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132209684	132209685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LEAP2	NM_052971	exon2	c.100_101insG	p.R34fs	.	.	135	63	137	0	.	90
LEKR1	389170	hgsc.bcm.edu	37	3	156763334	156763334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LEKR1	NM_001004316	exon13	c.T1874C	p.L625P	.	.	92	4	103	0	.	68
LENG9	94059	broad.mit.edu	37	19	54974392	54974392	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LENG9	NM_198988	exon1	c.G384C	p.W128C	.	.	8	6	11	0	.	68
LETM1	3954	hgsc.bcm.edu	37	4	1843301	1843301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LETM1	NM_012318	exon3	c.T367C	p.S123P	.	.	52	4	73	0	.	90
LGR5	8549	bcgsc.ca	37	12	71977932	71977932	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	LGR5,NS,carcinoma,+2	LGR5	NM_003667	exon18	c.T2142C	p.P714P	.	.	125	5	145	1	.	527
LINC00085	147650	ucsc.edu	37	19	52196694	52196694	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	36	4	34	0	.	.
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145497479	145497479	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LIX1L	NM_153713	exon4	c.G684A	p.L228L	.	.	537	73	205	0	.	91
LLGL1	3996	bcgsc.ca	37	17	18143958	18143958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LLGL1	NM_004140	exon17	c.A2273G	p.E758G	.	.	159	5	167	0	.	229
LMO2	4005	bcgsc.ca	37	11	33880961	33880961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LMO2	NM_005574	exon6	c.T625C	p.S209P	.	.	230	6	263	0	.	658
LOC100288069	0	broad.mit.edu	37	1	700532	700532	+	RNA	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	29	7	28	0	.	.
LOC100506023	0	bcgsc.ca	37	1	173332436	173332436	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	85	4	38	0	.	.
LOC255025	0	bcgsc.ca	37	3	94656186	94656186	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	128	54	180	0	.	.
LOC442028	0	ucsc.edu	37	2	95558460	95558460	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	36	4	50	0	.	.
LONRF3	79836	bcgsc.ca	37	X	118123572	118123572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LONRF3	NM_001031855	exon4	c.A1261G	p.R421G	.	.	161	6	196	0	.	289
LONRF3	79836	bcgsc.ca	37	X	118148202	118148202	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LONRF3	NM_001031855	exon10	c.A2007G	p.G669G	.	.	92	4	116	1	.	289
LOXL3	84695	hgsc.bcm.edu;bcgsc.ca	37	2	74763252	74763252	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LOXL3	NM_032603	exon7	c.A1119G	p.E373E	.	.	61	4	73	0	.	226
LPAL2	80350	bcgsc.ca	37	6	160887994	160887994	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LPAL2	.	.	.	.	.	.	71	4	60	0	.	90
LRP1	4035	bcgsc.ca	37	12	57573877	57573877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LRP1	NM_002332	exon31	c.A5189G	p.D1730G	.	.	51	4	78	0	.	596
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170031784	170031784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LRP2	NM_004525	exon55	c.G10687A	p.G3563S	.	.	200	88	213	0	.	175
LRRC30	339291	bcgsc.ca	37	18	7231723	7231723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LRRC30	NM_001105581	exon1	c.A587G	p.N196S	.	.	79	4	102	0	.	24
LRRK1	79705	bcgsc.ca	37	15	101588738	101588738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LRRK1	NM_024652	exon22	c.A3175G	p.K1059E	.	.	97	5	129	0	.	602
LTBP2	4053	bcgsc.ca	37	14	74992808	74992808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LTBP2	NM_000428	exon14	c.A2398G	p.S800G	.	.	82	4	99	0	.	92
LYSMD3	116068	broad.mit.edu	37	5	89814812	89814812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LYSMD3	NM_198273	exon3	c.A745G	p.S249G	.	.	310	5	352	1	.	90
LYST	1130	bcgsc.ca	37	1	235933590	235933590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LYST	NM_000081	exon20	c.T5792C	p.V1931A	.	.	147	6	276	1	.	143
LYST	1130	hgsc.bcm.edu;bcgsc.ca	37	1	235922305	235922305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	LYST	NM_000081	exon23	c.A6848G	p.E2283G	.	.	85	5	126	0	.	143
MAGEB1	4112	bcgsc.ca	37	X	30269411	30269411	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAGEB1	NM_177415	exon3	c.C801T	p.R267R	.	.	137	5	133	0	.	130
MAK16	84549	broad.mit.edu;bcgsc.ca	37	8	33355953	33355953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAK16	NM_032509	exon10	c.A709G	p.M237V	.	.	90	5	96	0	.	69
MAP2	4133	bcgsc.ca	37	2	210559644	210559644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP2	NM_002374	exon7	c.T2750C	p.V917A	.	.	113	5	133	0	.	591
MAP2	4133	hgsc.bcm.edu	37	2	210558811	210558811	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP2	NM_002374	exon7	c.T1917C	p.T639T	.	.	94	4	114	0	.	591
MAP2	4133	hgsc.bcm.edu	37	2	210570348	210570348	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	MAP2,NS,carcinoma,0	MAP2	NM_002374	exon11	c.A4629G	p.R1543R	.	.	91	5	105	0	.	591
MAP7D2	256714	bcgsc.ca	37	X	20031743	20031743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP7D2	NM_001168465	exon13	c.A1750G	p.R584G	.	.	146	5	208	1	.	195
MAP7D2	256714	broad.mit.edu;bcgsc.ca	37	X	20074814	20074814	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP7D2	NM_001168466	exon4	c.A468G	p.G156G	.	.	67	6	62	0	.	195
MAP9	79884	bcgsc.ca	37	4	156296164	156296164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MAP9	NM_001039580	exon3	c.A85G	p.I29V	.	.	150	5	188	0	.	91
MASP2	10747	bcgsc.ca	37	1	11097754	11097754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MASP2	NM_006610	exon7	c.T1004C	p.L335P	.	.	87	4	160	0	.	94
MCF2	4168	bcgsc.ca	37	X	138699817	138699817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MCF2	NM_001171876	exon11	c.T1034C	p.L345P	.	.	79	4	73	0	.	227
MCM8	84515	bcgsc.ca	37	20	5937776	5937776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MCM8	NM_032485	exon6	c.T491C	p.L164S	.	.	60	4	85	0	.	227
MCTP1	79772	hgsc.bcm.edu	37	5	94224673	94224673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MCTP1	NM_024717	exon12	c.C1844T	p.P615L	.	.	108	5	91	0	.	92
MDM1	56890	bcgsc.ca	37	12	68724960	68724960	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MDM1	NM_020128	exon2	c.T60C	p.S20S	.	.	96	5	125	0	.	95
MED13	9969	bcgsc.ca	37	17	60040331	60040331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MED13	NM_005121	exon21	c.A4846G	p.T1616A	.	.	83	4	61	0	.	136
MEGF10	84466	broad.mit.edu	37	5	126676264	126676264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MEGF10	NM_032446	exon5	c.G261C	p.M87I	.	.	269	7	224	1	.	94
MGAT1	4245	hgsc.bcm.edu	37	5	180218962	180218962	+	Missense_Mutation	SNP	T	T	C	rs139896438		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MGAT1	NM_001114617	exon3	c.A1010G	p.Q337R	.	.	89	4	88	0	T|1.000;C|0.000	91
MIEN1	84299	bcgsc.ca	37	17	37885826	37885826	+	Silent	SNP	T	T	C	rs113655366		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_032339	exon4	c.A297G	p.G99G	.	.	235	7	206	0	T|0.500;C|0.500	.
MKRN2	23609	bcgsc.ca	37	3	12623742	12623742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MKRN2	NM_014160	exon8	c.C1241T	p.S414L	.	.	138	5	152	0	.	90
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37053518	37053518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLH1	NM_000249	exon8	c.C605G	p.A202G	.	.	178	56	209	0	.	2559
MLH3	27030	bcgsc.ca	37	14	75516279	75516279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLH3	NM_014381	exon2	c.A80G	p.E27G	.	.	126	6	110	0	.	228
MLL3	58508	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151962208	151962208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLL3	NM_170606	exon8	c.C1099G	p.H367D	.	.	566	41	527	0	.	1398
MLLT4	4301	bcgsc.ca	37	6	168352589	168352589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MLLT4	NM_001040000	exon29	c.T4534C	p.S1512P	.	.	126	20	147	11	.	685
MMEL1	79258	bcgsc.ca	37	1	2541132	2541132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MMEL1	NM_033467	exon5	c.A431G	p.D144G	.	.	26	3	55	0	.	90
MMS22L	253714	bcgsc.ca	37	6	97729156	97729156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MMS22L	NM_198468	exon3	c.A247G	p.T83A	.	.	77	4	86	0	.	92
MN1	4330	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28193394	28193394	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MN1	NM_002430	exon1	c.G3138A	p.S1046S	.	.	71	21	72	0	.	993
MNAT1	4331	bcgsc.ca	37	14	61201602	61201602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MNAT1	NM_001177963	exon1	c.C22T	p.R8W	.	.	127	5	136	2	.	523
MOCS3	27304	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49576556	49576556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MOCS3	NM_014484	exon1	c.A1177T	p.I393F	.	.	75	28	90	0	.	93
MON2	23041	bcgsc.ca	37	12	62940832	62940832	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MON2	NM_015026	exon22	c.A2733G	p.G911G	.	.	159	6	153	1	.	514
MPO	4353	bcgsc.ca	37	17	56352974	56352974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MPO	NM_000250	exon8	c.A1294G	p.S432G	.	.	250	7	220	0	.	156
MPRIP	23164	bcgsc.ca	37	17	17035014	17035014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MPRIP	NM_015134	exon5	c.A503G	p.Q168R	.	.	67	4	69	0	.	90
MRC2	9902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60765748	60765748	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MRC2	NM_006039	exon21	c.A3045T	p.T1015T	.	.	108	48	123	0	.	117
MRPL55	128308	bcgsc.ca	37	1	228295447	228295447	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MRPL55	NM_181462	exon5	c.A258G	p.R86R	.	.	69	4	122	1	.	90
MRPS31P5	100887750	bcgsc.ca	37	13	52749859	52749859	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	60	4	89	0	.	.
MRVI1	10335	bcgsc.ca	37	11	10602095	10602095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MRVI1	NM_130385	exon20	c.T2402C	p.L801P	.	.	144	6	136	0	.	25
MS4A4A	51338	bcgsc.ca	37	11	60075627	60075627	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MS4A4A	NM_148975	exon7	c.T696C	p.S232S	.	.	178	6	218	0	.	90
MSH2	4436	bcgsc.ca	37	2	47705626	47705626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MSH2	NM_000251	exon14	c.A2426G	p.E809G	.	.	203	7	179	0	.	2445
MTF1	4520	hgsc.bcm.edu	37	1	38281033	38281033	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MTF1	NM_005955	exon11	c.T2037C	p.S679S	.	.	97	4	126	0	.	92
MTMR4	9110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56585600	56585600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MTMR4	NM_004687	exon8	c.C587T	p.P196L	.	.	57	11	57	0	.	91
MUC16	94025	bcgsc.ca	37	19	8996330	8996330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC16	NM_024690	exon61	c.T41242C	p.F13748L	.	.	91	4	175	0	.	566
MUC16	94025	bcgsc.ca	37	19	9060915	9060915	+	Missense_Mutation	SNP	C	C	T	rs59168469	byfrequency	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC16	NM_024690	exon3	c.G26531A	p.R8844H	.	.	111	5	281	0	C|0.974;T|0.026	566
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062181	9062181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC16	NM_024690	exon3	c.G25265A	p.S8422N	.	.	123	70	255	0	.	566
MUC2	4583	bcgsc.ca	37	11	1081107	1081107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC2	NM_002457	exon11	c.T1403C	p.L468P	.	.	71	4	173	0	.	90
MUC2	4583	bcgsc.ca	37	11	1091479	1091479	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUC2	NM_002457	exon29	c.A3888G	p.S1296S	.	.	336	9	606	2	.	90
MUC5B	727897	bcgsc.ca	37	11	1257673	1257673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_002458	exon24	c.G2938T	p.G980W	.	.	48	4	78	0	.	.
MUSK	4593	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	113563239	113563239	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MUSK	NM_005592	exon14	c.G2581T	p.E861X	.	.	55	20	64	0	.	1379
MYBL2	4605	bcgsc.ca	37	20	42331437	42331437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYBL2	NM_002466	exon8	c.T1259C	p.L420P	.	.	134	5	129	0	.	415
MYH14	79784	bcgsc.ca	37	19	50733867	50733867	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH14	NM_001077186	exon9	c.A960G	p.G320G	.	.	60	4	49	1	.	23
MYH3	4621	bcgsc.ca	37	17	10538320	10538320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH3	NM_002470	exon31	c.T4193C	p.L1398P	.	.	232	7	249	0	.	95
MYH3	4621	broad.mit.edu;bcgsc.ca	37	17	10534998	10534998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH3	NM_002470	exon36	c.A5216G	p.Q1739R	.	.	518	18	514	0	.	95
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10369612	10369612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH4	NM_017533	exon4	c.G326T	p.R109L	.	.	420	136	424	0	.	102
MYH9	4627	bcgsc.ca	37	22	36710203	36710203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYH9	NM_002473	exon13	c.T1541C	p.L514P	.	.	223	7	221	4	.	292
MYLIP	29116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	16145168	16145168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYLIP	NM_013262	exon6	c.C868A	p.R290S	.	.	182	58	200	0	.	91
MYO18B	84700	bcgsc.ca	37	22	26388426	26388426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO18B	NM_032608	exon40	c.A6254G	p.E2085G	.	.	52	4	56	1	.	142
MYO3B	140469	hgsc.bcm.edu;bcgsc.ca	37	2	171323061	171323061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO3B	NM_001083615	exon25	c.C2854T	p.H952Y	.	.	75	4	71	0	.	530
MYO5A	4644	bcgsc.ca	37	15	52675335	52675335	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO5A	NM_000259	exon16	c.T1965C	p.P655P	.	.	64	4	119	1	.	93
MYO6	4646	bcgsc.ca	37	6	76527278	76527278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO6	NM_004999	exon2	c.A14G	p.K5R	.	.	109	7	89	0	.	92
MYO7B	4648	hgsc.bcm.edu	37	2	128338357	128338357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYO7B	NM_001080527	exon10	c.T1040C	p.M347T	.	.	83	4	93	0	.	47
MYOF	26509	bcgsc.ca	37	10	95069857	95069857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MYOF	NM_013451	exon53	c.C6067T	p.R2023C	.	.	76	4	166	0	.	93
MZT2A	653784	ucsc.edu	37	2	132241632	132241632	+	RNA	SNP	T	T	A	rs200640575		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	MZT2A	.	.	.	.	.	.	259	81	344	0	T|0.999;A|0.001	68
NBAS	51594	hgsc.bcm.edu	37	2	15514800	15514800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NBAS	NM_015909	exon31	c.A3635G	p.E1212G	.	.	118	5	100	0	.	94
NBAS	51594	hgsc.bcm.edu	37	2	15534402	15534402	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NBAS	NM_015909	exon28	c.C3206A	p.S1069X	.	.	130	6	143	0	.	94
NBEAL1	65065	broad.mit.edu;bcgsc.ca	37	2	204009798	204009798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NBEAL1	NM_001114132	exon32	c.T5132C	p.L1711P	.	.	254	9	274	2	.	92
NBPF9	400818	broad.mit.edu;bcgsc.ca	37	1	144825428	144825428	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	481	12	154	0	.	.
NCAPD3	23310	bcgsc.ca	37	11	134062784	134062784	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NCAPD3	NM_015261	exon16	c.G1845A	p.Q615Q	.	.	80	4	74	0	.	229
NCAPH	23397	hgsc.bcm.edu	37	2	97009872	97009872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NCAPH	NM_015341	exon6	c.A625G	p.K209E	.	.	97	4	101	0	.	228
NCF1B	654816	broad.mit.edu	37	7	72645915	72645915	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	848	11	773	0	.	.
NCK1	4690	bcgsc.ca	37	3	136646897	136646897	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NCK1	NM_006153	exon2	c.A54G	p.E18E	.	.	234	7	273	0	.	847
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33337355	33337355	+	Silent	SNP	C	C	T	rs147990465		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NCOA6	NM_014071	exon9	c.G2643A	p.T881T	.	.	363	138	448	1	C|1.000;T|0.000	292
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11089	11089	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	ENST00000361381	exon1	c.C330T	p.F110F	.	.	322	9	442	0	.	.
ND5	0	broad.mit.edu	37	MT	12814	12814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	ENST00000361567	exon1	c.G478A	p.A160T	.	.	319	7	351	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13102	13102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	ENST00000361567	exon1	c.G766A	p.G256R	.	.	305	16	358	0	.	.
NDUFA9	4704	bcgsc.ca	37	12	4778908	4778908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NDUFA9	NM_005002	exon8	c.T725C	p.V242A	.	.	176	6	281	0	.	227
NEBL	10529	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21074701	21074701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEBL	NM_006393	exon28	c.C3020T	p.A1007V	.	.	95	31	107	0	.	92
NEIL3	55247	hgsc.bcm.edu	37	4	178257425	178257425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEIL3	NM_018248	exon4	c.A577G	p.I193V	.	.	94	4	174	0	.	660
NELFE	7936	broad.mit.edu	37	6	31922613	31922613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_002904	exon7	c.A461G	p.E154G	.	.	20	4	29	0	.	.
NEU2	4759	hgsc.bcm.edu;bcgsc.ca	37	2	233898881	233898881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NEU2	NM_005383	exon2	c.A257G	p.N86S	.	.	107	5	119	0	.	90
NFAT5	10725	bcgsc.ca	37	16	69718823	69718823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFAT5	NM_138713	exon11	c.A1724G	p.K575R	.	.	154	5	327	0	.	90
NFATC3	4775	broad.mit.edu	37	16	68155898	68155898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFATC3	NM_173163	exon2	c.C112T	p.P38S	.	.	52	4	106	1	.	92
NFKBIB	4793	ucsc.edu;bcgsc.ca	37	19	39397949	39397949	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFKBIB	NM_002503	exon4	c.G708A	p.P236P	.	.	37	4	45	0	.	658
NFKBID	84807	bcgsc.ca	37	19	36388551	36388551	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFKBID	NM_139239	exon5	c.6+2T>C	.	.	.	154	7	165	0	.	90
NFRKB	4798	bcgsc.ca	37	11	129746620	129746620	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NFRKB	NM_006165	exon15	c.T1818C	p.S606S	.	.	53	4	84	0	.	93
NKAIN1	79570	hgsc.bcm.edu	37	1	31656794	31656794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NKAIN1	NM_024522	exon4	c.G341T	p.G114V	.	.	88	4	112	0	.	91
NLRP8	126205	bcgsc.ca	37	19	56466883	56466883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NLRP8	NM_176811	exon3	c.T1459C	p.F487L	.	.	129	6	141	0	.	361
NMUR1	10316	hgsc.bcm.edu;bcgsc.ca	37	2	232392897	232392897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NMUR1	NM_006056	exon2	c.T835C	p.S279P	.	.	74	5	86	0	.	523
NOL9	79707	hgsc.bcm.edu	37	1	6589090	6589090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NOL9	NM_024654	exon10	c.C1789T	p.L597F	.	.	95	4	176	0	.	515
NOTCH2	4853	hgsc.bcm.edu	37	1	120461034	120461034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NOTCH2	NM_024408	exon32	c.A5924G	p.D1975G	.	.	181	9	100	0	.	1441
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	120539927	120539927	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NOTCH2	NM_001200001	exon4	c.C444T	p.C148C	.	.	614	406	317	1	.	1441
NPAS4	266743	bcgsc.ca	37	11	66190252	66190252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NPAS4	NM_178864	exon4	c.G538A	p.A180T	.	.	66	4	92	0	.	90
NPHP1	4867	hgsc.bcm.edu;bcgsc.ca	37	2	110881571	110881571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NPHP1	NM_000272	exon20	c.T1999C	p.S667P	.	.	66	4	105	0	.	92
NPHP4	261734	hgsc.bcm.edu	37	1	5934637	5934637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NPHP4	NM_015102	exon22	c.A3125G	p.H1042R	.	.	85	7	144	0	.	515
NPR2	4882	bcgsc.ca	37	9	35809389	35809389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NPR2	NM_003995	exon22	c.A3091G	p.M1031V	.	.	84	4	99	0	.	335
NR2C1	7181	bcgsc.ca	37	12	95452233	95452233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NR2C1	NM_001032287	exon5	c.T397C	p.C133R	.	.	96	4	111	0	.	187
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149073680	149073680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NR3C2	NM_000901	exon6	c.G2450T	p.R817I	.	.	234	78	308	0	.	154
NRBP2	340371	broad.mit.edu;bcgsc.ca	37	8	144919472	144919473	+	Splice_Site	INS	-	-	TGGCA	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NRBP2	NM_178564	exon14	c.1077-1->TGCCA	.	.	.	118	20	75	0	.	354
NSRP1	84081	bcgsc.ca	37	17	28512255	28512255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NSRP1	NM_032141	exon7	c.A1240G	p.S414G	.	.	311	7	343	0	.	91
NUP93	9688	bcgsc.ca	37	16	56866235	56866235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NUP93	NM_014669	exon12	c.G1280A	p.G427D	.	.	132	5	188	0	.	205
NYNRIN	57523	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24877718	24877718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	NYNRIN	NM_025081	exon3	c.C842A	p.A281E	.	.	39	10	31	0	.	3
OBSCN	84033	bcgsc.ca	37	1	228462477	228462477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OBSCN	NM_001271223	exon24	c.A7013G	p.E2338G	.	.	49	4	117	0	.	403
ODF2	4957	bcgsc.ca	37	9	131222845	131222845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ODF2	NM_153435	exon3	c.A272G	p.D91G	.	.	78	4	80	0	.	69
OGFOD3	79701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80356196	80356196	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_024648	exon9	c.700-1G>T	.	.	.	93	21	81	0	.	.
OLA1	29789	hgsc.bcm.edu	37	2	174945976	174945976	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OLA1	NM_013341	exon9	c.T870C	p.S290S	.	.	112	5	97	0	.	132
OPRD1	4985	ucsc.edu;bcgsc.ca	37	1	29185520	29185520	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OPRD1	NM_000911	exon2	c.C282T	p.A94A	.	.	44	4	95	0	.	69
OPRM1	4988	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154412235	154412235	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OPRM1	NM_001145279	exon5	c.C1071A	p.V357V	.	.	523	181	597	2	.	69
OR2AE1	81392	broad.mit.edu;bcgsc.ca	37	7	99473775	99473775	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OR2AE1	NM_001005276	exon1	c.A882G	p.K294K	.	.	225	6	222	2	.	90
OR4N3P	390539	bcgsc.ca	37	15	22414373	22414373	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	66	4	195	0	.	.
OR5M11	219487	bcgsc.ca	37	11	56310001	56310001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001005245	exon1	c.A733G	p.M245V	.	.	78	4	107	0	.	.
OR6C76	390326	bcgsc.ca	37	12	55820623	55820623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OR6C76	NM_001005183	exon1	c.A586G	p.S196G	.	.	183	6	234	1	.	68
OR6F1	343169	hgsc.bcm.edu	37	1	247875175	247875175	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OR6F1	NM_001005286	exon1	c.A883T	p.K295X	.	.	84	4	166	0	.	68
OTOF	9381	hgsc.bcm.edu	37	2	26693459	26693459	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OTOF	NM_194248	exon33	c.4023+2T>C	.	.	.	97	4	131	0	.	135
OVCH1	341350	bcgsc.ca	37	12	29625962	29625962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OVCH1	NM_183378	exon15	c.G1675A	p.D559N	.	.	144	5	184	0	.	210
OVCH1	341350	bcgsc.ca	37	12	29631780	29631780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	OVCH1	NM_183378	exon9	c.G1057A	p.G353R	.	.	257	7	277	1	.	210
PAGR1	79447	bcgsc.ca	37	16	29828316	29828316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_024516	exon1	c.A470G	p.E157G	.	.	21	3	26	0	.	.
PANX2	56666	ucsc.edu;bcgsc.ca	37	22	50615985	50615985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PANX2	NM_052839	exon2	c.C844A	p.P282T	.	.	36	4	39	0	.	131
PAPPA2	60676	hgsc.bcm.edu	37	1	176668293	176668293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PAPPA2	NM_020318	exon8	c.T2804C	p.V935A	.	.	196	9	68	0	.	548
PAPPA	5069	bcgsc.ca	37	9	118997419	118997419	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PAPPA	NM_002581	exon7	c.T2235C	p.G745G	.	.	89	4	99	0	.	77
PARP6	56965	bcgsc.ca	37	15	72533814	72533814	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PARP6	NM_020214	exon23	c.T1875C	p.T625T	.	.	163	5	153	0	.	522
PC	5091	bcgsc.ca	37	11	66639552	66639552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PC	NM_000920	exon3	c.C79T	p.P27S	.	.	104	6	97	0	.	228
PC	5091	ucsc.edu;bcgsc.ca	37	11	66618558	66618558	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PC	NM_000920	exon16	c.T2176C	p.L726L	.	.	38	4	75	0	.	228
PCDH20	64881	bcgsc.ca	37	13	61986816	61986816	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCDH20	NM_022843	exon2	c.A1416G	p.E472E	.	.	144	5	257	0	.	581
PCDHB5	26167	hgsc.bcm.edu	37	5	140515856	140515856	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCDHB5	NM_015669	exon1	c.T840C	p.A280A	.	.	99	4	100	0	.	95
PCDHB6	56130	hgsc.bcm.edu	37	5	140530199	140530199	+	Nonsense_Mutation	SNP	C	C	T	rs144886449	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCDHB6	NM_018939	exon1	c.C361T	p.R121X	.	.	93	4	89	0	C|1.000;A|0.000	91
PCDHGC3	5098	hgsc.bcm.edu;bcgsc.ca	37	5	140856091	140856091	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCDHGC3	NM_032402	exon1	c.T408C	p.P136P	.	.	119	5	120	0	.	24
PCGF5	84333	bcgsc.ca	37	10	93000329	93000329	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCGF5	NM_001256549	exon3	c.A201G	p.E67E	.	.	75	4	133	0	.	226
PCGF6	84108	bcgsc.ca	37	10	105063720	105063720	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCGF6	NM_032154	exon8	c.772-2A>G	.	.	.	205	6	337	0	.	226
PCLO	27445	broad.mit.edu	37	7	82581739	82581739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PCLO	NM_014510	exon5	c.T8530C	p.F2844L	.	.	679	10	881	0	.	29
PDE5A	8654	hgsc.bcm.edu	37	4	120549709	120549709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDE5A	NM_001083	exon1	c.T118C	p.F40L	.	.	75	5	76	0	.	90
PDHA2	5161	hgsc.bcm.edu	37	4	96761829	96761829	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDHA2	NM_005390	exon1	c.T528C	p.A176A	.	.	75	4	72	0	.	90
PDLIM3	27295	bcgsc.ca	37	4	186435991	186435991	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDLIM3	NM_001114107	exon4	c.A384G	p.A128A	.	.	132	5	191	0	.	92
PDX1	3651	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498632	28498632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDX1	NM_000209	exon2	c.G646A	p.G216R	.	.	34	8	41	0	.	514
PDZD8	118987	bcgsc.ca	37	10	119043253	119043253	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDZD8	NM_173791	exon5	c.A2991G	p.T997T	.	.	147	5	264	0	.	90
PDZD9	255762	broad.mit.edu;bcgsc.ca	37	16	21995822	21995823	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PDZD9	NM_173806	exon3	c.381_382insA	p.H127fs	.	.	401	132	501	0	.	91
PECR	55825	hgsc.bcm.edu	37	2	216904018	216904018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PECR	NM_018441	exon8	c.A892G	p.K298E	.	.	100	4	89	0	.	90
PEG10	23089	bcgsc.ca	37	7	94292917	94292917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PEG10	NM_001172438	exon2	c.A277G	p.R93G	.	.	171	5	177	0	.	23
PERP	64065	bcgsc.ca	37	6	138413256	138413256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PERP	NM_022121	exon3	c.T505C	p.F169L	.	.	133	5	122	0	.	90
PGBD5	79605	hgsc.bcm.edu	37	1	230492867	230492867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PGBD5	NM_001258311	exon2	c.A532G	p.S178G	.	.	69	4	123	0	.	93
PGM2L1	283209	bcgsc.ca	37	11	74047760	74047760	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PGM2L1	NM_173582	exon14	c.T1806C	p.I602I	.	.	210	6	212	0	.	91
PHF8	23133	bcgsc.ca	37	X	54043161	54043161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PHF8	NM_001184896	exon6	c.A571G	p.K191E	.	.	83	4	68	0	.	133
PHOX2B	8929	hgsc.bcm.edu	37	4	41750513	41750513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PHOX2B	NM_003924	exon1	c.G115A	p.A39T	.	.	70	4	66	0	.	1970
PIK3R4	30849	broad.mit.edu	37	3	130424416	130424416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PIK3R4	NM_014602	exon12	c.C2921A	p.P974Q	.	.	804	7	846	1	.	1471
PIK3R4	30849	hgsc.bcm.edu;bcgsc.ca	37	3	130435261	130435261	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PIK3R4	NM_014602	exon9	c.T2310C	p.L770L	.	.	113	6	134	0	.	1471
PINK1	65018	bcgsc.ca	37	1	20964469	20964469	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PINK1	NM_032409	exon2	c.C522T	p.T174T	.	.	90	4	102	1	.	380
PITPNA	5306	bcgsc.ca	37	17	1451630	1451630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PITPNA	NM_006224	exon4	c.A249G	p.I83M	.	.	54	4	52	0	.	227
PKHD1	5314	bcgsc.ca	37	6	51889616	51889616	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PKHD1	NM_170724	exon32	c.T4992C	p.S1664S	.	.	131	5	196	0	.	603
PLA2G15	23659	bcgsc.ca	37	16	68288879	68288879	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLA2G15	NM_012320	exon3	c.T342C	p.R114R	.	.	69	4	112	0	.	91
PLA2R1	22925	bcgsc.ca	37	2	160836406	160836406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLA2R1	NM_001195641	exon14	c.T2203C	p.W735R	.	.	291	8	303	1	.	93
PLCD1	5333	hgsc.bcm.edu	37	3	38049787	38049787	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLCD1	NM_001130964	exon13	c.G2037T	p.V679V	.	.	79	4	133	0	.	226
PLCG2	5336	ucsc.edu;bcgsc.ca	37	16	81969981	81969981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLCG2	NM_002661	exon27	c.C3050T	p.A1017V	.	.	34	4	43	0	.	892
PLD5	200150	bcgsc.ca	37	1	242270976	242270976	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLD5	NM_152666	exon9	c.A1236G	p.K412K	.	.	56	4	143	1	.	96
PLEKHG4	25894	ucsc.edu	37	16	67318179	67318179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLEKHG4	NM_001129728	exon12	c.A1511G	p.E504G	.	.	48	4	102	1	.	92
PLG	5340	bcgsc.ca	37	6	161139374	161139374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLG	NM_000301	exon8	c.C836T	p.T279I	.	.	87	5	95	0	.	94
PLOD2	5352	hgsc.bcm.edu;bcgsc.ca	37	3	145795696	145795696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLOD2	NM_182943	exon14	c.A1516G	p.K506E	.	.	57	4	41	0	.	92
PLXNA1	5361	hgsc.bcm.edu;bcgsc.ca	37	3	126739124	126739124	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PLXNA1	NM_032242	exon20	c.G3975T	p.R1325R	.	.	87	4	106	0	.	93
PMEL	6490	bcgsc.ca	37	12	56351194	56351194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PMEL	NM_001200054	exon6	c.T893C	p.L298P	.	.	92	5	129	0	.	92
PML	5371	bcgsc.ca	37	15	74337231	74337231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PML	NM_033238	exon9	c.A2531G	p.Q844R	.	.	89	4	83	0	.	1083
PNLIP	5406	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118310666	118310666	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PNLIP	NM_000936	exon5	c.C381T	p.S127S	.	.	119	63	265	0	.	92
POF1B	79983	bcgsc.ca	37	X	84562192	84562192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POF1B	NM_024921	exon11	c.A1141G	p.R381G	.	.	352	8	428	0	.	130
POFUT1	23509	bcgsc.ca	37	20	30822299	30822299	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POFUT1	NM_015352	exon7	c.T1002C	p.P334P	.	.	169	5	154	0	.	650
POLN	353497	hgsc.bcm.edu;bcgsc.ca	37	4	2210196	2210196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POLN	NM_181808	exon3	c.A232G	p.S78G	.	.	59	4	78	0	.	539
POLR2B	5431	broad.mit.edu	37	4	57873161	57873161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POLR2B	NM_000938	exon10	c.T1397C	p.V466A	.	.	210	4	266	1	.	92
POLR3E	55718	bcgsc.ca	37	16	22335679	22335679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	POLR3E	NM_001258033	exon15	c.G1073T	p.W358L	.	.	155	5	195	1	.	91
PPIA	5478	bcgsc.ca	37	7	44836349	44836349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPIA	NM_021130	exon1	c.A26G	p.D9G	.	.	62	4	61	0	.	90
PPME1	51400	bcgsc.ca	37	11	73962720	73962720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001271593	exon13	c.A1144G	p.I382V	.	.	120	5	124	0	.	.
PPP1R15A	23645	bcgsc.ca	37	19	49377665	49377665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP1R15A	NM_014330	exon2	c.A1175G	p.Q392R	.	.	153	21	178	0	.	226
PPP1R3B	79660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8998473	8998473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP1R3B	NM_001201329	exon2	c.A689G	p.Y230C	.	.	488	190	568	0	.	228
PPP2R3A	5523	hgsc.bcm.edu;bcgsc.ca	37	3	135721457	135721457	+	Missense_Mutation	SNP	T	T	C	rs148236440	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP2R3A	NM_002718	exon2	c.T1117C	p.S373P	.	.	119	5	135	0	T|1.000;G|0.000	662
PPP2R5B	5526	bcgsc.ca	37	11	64700712	64700712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP2R5B	NM_006244	exon13	c.A1340G	p.K447R	.	.	71	4	36	0	.	660
PPP4R1	9989	bcgsc.ca	37	18	9563544	9563544	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PPP4R1	NM_001042388	exon12	c.A1578G	p.Q526Q	.	.	84	4	99	0	.	227
PRDX5	25824	bcgsc.ca	37	11	64087342	64087342	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRDX5	NM_012094	exon2	c.306+2T>C	.	.	.	83	4	111	0	.	153
PRICKLE2	166336	hgsc.bcm.edu	37	3	64138962	64138962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRICKLE2	NM_198859	exon6	c.T683C	p.V228A	.	.	98	4	73	0	.	95
PRKCZ	5590	hgsc.bcm.edu	37	1	2105426	2105426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRKCZ	NM_002744	exon14	c.A1376G	p.D459G	.	.	100	4	198	0	.	1465
PRKG2	5593	bcgsc.ca	37	4	82058550	82058550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRKG2	NM_006259	exon12	c.A1631G	p.D544G	.	.	224	6	209	1	.	524
PRMT10	90826	hgsc.bcm.edu;bcgsc.ca	37	4	148563937	148563937	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRMT10	NM_138364	exon11	c.2199+1G>A	.	.	.	78	4	128	0	.	91
PROC	5624	hgsc.bcm.edu	37	2	128186428	128186428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PROC	NM_000312	exon9	c.A1292G	p.N431S	.	.	73	4	63	0	.	90
PROX1	5629	hgsc.bcm.edu	37	1	214171377	214171377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PROX1	NM_001270616	exon2	c.C1499T	p.P500L	.	.	61	4	86	0	.	654
PRRC2A	7916	bcgsc.ca	37	6	31593262	31593262	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRRC2A	NM_004638	exon7	c.T633C	p.G211G	.	.	81	4	95	1	.	156
PRUNE2	158471	bcgsc.ca	37	9	79469123	79469123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PRUNE2	NM_015225	exon2	c.A38G	p.N13S	.	.	119	6	147	0	.	157
PSD4	23550	hgsc.bcm.edu	37	2	113958938	113958938	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PSD4	NM_012455	exon17	c.A3117G	p.S1039S	.	.	69	4	70	0	.	229
PSIP1	11168	bcgsc.ca	37	9	15469959	15469959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PSIP1	NM_001128217	exon11	c.T1010C	p.V337A	.	.	80	4	98	0	.	658
PSME4	23198	hgsc.bcm.edu	37	2	54122147	54122147	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PSME4	NM_014614	exon34	c.A3909G	p.T1303T	.	.	95	4	95	0	.	275
PTPRK	5796	bcgsc.ca	37	6	128298128	128298128	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRK	NM_001135648	exon27	c.A3801G	p.R1267R	.	.	186	6	207	1	.	231
PTPRN2	5799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157369373	157369373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRN2	NM_002847	exon19	c.G2715T	p.Q905H	.	.	142	44	148	0	.	295
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29641992	29641992	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PTPRU	NM_005704	exon24	c.C3366T	p.S1122S	.	.	82	48	161	0	.	291
PUS10	150962	hgsc.bcm.edu;bcgsc.ca	37	2	61175283	61175283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PUS10	NM_144709	exon16	c.T1346C	p.L449P	.	.	123	5	152	0	.	291
PVRL1	5818	bcgsc.ca	37	11	119545309	119545309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PVRL1	NM_203286	exon6	c.T1052C	p.M351T	.	.	162	5	212	0	.	90
PXDN	7837	hgsc.bcm.edu	37	2	1652432	1652432	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	PXDN	NM_012293	exon17	c.G3120A	p.G1040G	.	.	80	4	96	0	.	166
QRICH2	84074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74287960	74287960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	QRICH2	NM_032134	exon4	c.G2350A	p.D784N	.	.	200	53	166	0	.	94
QRSL1	55278	bcgsc.ca	37	6	107103547	107103547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	QRSL1	NM_018292	exon9	c.A1100G	p.E367G	.	.	252	7	336	1	.	90
R3HDM1	23518	hgsc.bcm.edu	37	2	136481779	136481779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	R3HDM1	NM_015361	exon26	c.A3217G	p.I1073V	.	.	87	4	124	0	.	91
RAB6B	51560	hgsc.bcm.edu;bcgsc.ca	37	3	133560224	133560224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RAB6B	NM_016577	exon4	c.A194G	p.Q65R	.	.	84	4	83	0	.	228
RABGGTA	5875	bcgsc.ca	37	14	24739239	24739239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_004581	exon4	c.T347C	p.L116P	.	.	103	7	110	0	.	.
RAP1GAP	5909	hgsc.bcm.edu	37	1	21936087	21936087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RAP1GAP	NM_001145658	exon15	c.A1244G	p.D415G	.	.	88	5	145	0	.	245
RASSF1	11186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50368106	50368106	+	Missense_Mutation	SNP	C	C	G	rs142957899	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RASSF1	NM_170714	exon6	c.G941C	p.R314P	.	.	60	12	79	0	C|1.000;T|0.000	417
RB1	5925	broad.mit.edu;bcgsc.ca	37	13	48939032	48939033	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RB1	NM_000321	exon9	c.864_865insA	p.V288fs	.	.	230	114	465	0	.	3784
RBBP7	5931	bcgsc.ca	37	X	16881079	16881079	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RBBP7	NM_001198719	exon3	c.T438C	p.G146G	.	.	189	7	219	0	.	227
RBL2	5934	ucsc.edu;bcgsc.ca	37	16	53504485	53504485	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RBL2	NM_005611	exon16	c.A2436G	p.P812P	.	.	41	4	107	0	.	841
RBM46	166863	hgsc.bcm.edu	37	4	155719149	155719149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RBM46	NM_144979	exon3	c.A338G	p.E113G	.	.	100	4	159	0	.	69
RBMS2	5939	bcgsc.ca	37	12	56974984	56974984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RBMS2	NM_002898	exon6	c.A559G	p.K187E	.	.	63	4	67	0	.	90
RCOR2	283248	bcgsc.ca	37	11	63679778	63679778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RCOR2	NM_173587	exon11	c.A1256G	p.E419G	.	.	126	6	158	1	.	92
RECQL5	9400	bcgsc.ca	37	17	73661232	73661232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RECQL5	NM_001003715	exon3	c.T151C	p.C51R	.	.	83	4	41	0	.	538
REPS1	85021	bcgsc.ca	37	6	139251195	139251195	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	REPS1	NM_001128617	exon9	c.T1176C	p.S392S	.	.	118	7	113	0	.	522
RESP18	389075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220194423	220194423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RESP18	NM_001007089	exon4	c.G401T	p.R134I	.	.	145	44	150	0	.	90
REST	5978	bcgsc.ca	37	4	57797145	57797145	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	REST	NM_001193508	exon4	c.A2121G	p.E707E	.	.	159	7	170	1	.	232
RETNLB	84666	hgsc.bcm.edu	37	3	108475432	108475432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RETNLB	NM_032579	exon2	c.A131G	p.Y44C	.	.	81	4	113	0	.	91
RGL2	5863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33261661	33261661	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RGL2	NM_004761	exon13	c.C1419G	p.L473L	.	.	95	37	105	0	.	662
RGS7BP	401190	hgsc.bcm.edu	37	5	63802520	63802520	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RGS7BP	NM_001029875	exon1	c.C69A	p.I23I	.	.	115	5	84	0	.	68
RICTOR	253260	hgsc.bcm.edu	37	5	38978735	38978735	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RICTOR	NM_152756	exon9	c.T771A	p.Y257X	.	.	99	4	92	0	.	849
RIN3	79890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93118696	93118696	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RIN3	NM_024832	exon6	c.G1302A	p.Q434Q	.	.	116	36	164	0	.	522
RLN2	6019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5300172	5300172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RLN2	NM_134441	exon2	c.C484A	p.Q162K	.	.	315	108	385	1	.	90
RLTPR	146206	bcgsc.ca	37	16	67681223	67681223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RLTPR	NM_001013838	exon10	c.A709G	p.I237V	.	.	79	4	163	0	.	67
RNASE10	338879	bcgsc.ca	37	14	20979077	20979077	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RNASE10	NM_001012975	exon1	c.A447G	p.K149K	.	.	57	4	73	0	.	90
RNR2	6053	broad.mit.edu	37	MT	2395	2395	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	313	11	524	0	.	.
RORA	6095	bcgsc.ca	37	15	60850474	60850474	+	Missense_Mutation	SNP	G	G	A	rs199911448		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RORA	NM_134260	exon2	c.C169T	p.H57Y	.	.	80	4	72	0	.	290
RPL7L1	285855	bcgsc.ca	37	6	42848614	42848614	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RPL7L1	NM_198486	exon2	c.T30C	p.P10P	.	.	101	5	104	0	.	90
RPRD1B	58490	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36687860	36687860	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RPRD1B	NM_021215	exon5	c.G593C	p.R198P	.	.	156	54	164	0	.	91
RS1	6247	bcgsc.ca	37	X	18662554	18662554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RS1	NM_000330	exon5	c.A518G	p.N173S	.	.	81	4	92	0	.	132
RTKN2	219790	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63999451	63999451	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RTKN2	NM_145307	exon5	c.G444T	p.V148V	.	.	415	21	346	0	.	68
RUFY2	55680	bcgsc.ca	37	10	70105783	70105783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RUFY2	NM_017987	exon17	c.T1763C	p.F588S	.	.	139	5	283	0	.	91
RWDD1	51389	bcgsc.ca	37	6	116901485	116901485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	RWDD1	NM_015952	exon2	c.C101A	p.T34N	.	.	94	4	102	0	.	92
S100P	6286	bcgsc.ca	37	4	6698653	6698653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	S100P	NM_005980	exon2	c.C172A	p.L58I	.	.	242	6	237	0	.	514
SAFB	6294	bcgsc.ca	37	19	5626493	5626493	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SAFB	NM_002967	exon2	c.T267C	p.S89S	.	.	86	4	198	1	.	228
SALL1	6299	bcgsc.ca	37	16	51174607	51174607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SALL1	NM_002968	exon2	c.A1526G	p.N509S	.	.	149	5	301	1	.	98
SALL1	6299	bcgsc.ca	37	16	51175164	51175164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SALL1	NM_002968	exon2	c.G969T	p.Q323H	.	.	67	4	137	0	.	98
SAMD1	90378	bcgsc.ca	37	19	14200109	14200109	+	Silent	SNP	T	T	C	rs8062	bycluster;byfrequency;by1000genomes	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_138352	exon2	c.A702G	p.E234E	.	.	157	6	255	1	T|0.072;C|0.002;A|0.926	.
SARNP	84324	bcgsc.ca	37	12	56182898	56182898	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SARNP	NM_033082	exon9	c.T462C	p.A154A	.	.	103	6	119	0	.	44
SARNP	84324	bcgsc.ca	37	12	56197433	56197433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SARNP	NM_033082	exon2	c.A116G	p.Q39R	.	.	138	5	132	0	.	44
SBF2	81846	bcgsc.ca	37	11	9861073	9861073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SBF2	NM_030962	exon26	c.T3427C	p.S1143P	.	.	96	4	89	0	.	93
SBNO2	22904	bcgsc.ca	37	19	1114334	1114334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_014963	exon18	c.A1973G	p.E658G	.	.	74	7	147	1	.	.
SCAND3	114821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28543241	28543241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCAND3	NM_052923	exon3	c.C1241G	p.P414R	.	.	83	36	186	0	.	91
SCMH1	22955	hgsc.bcm.edu	37	1	41493981	41493981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCMH1	NM_001031694	exon16	c.G1868T	p.G623V	.	.	94	4	145	0	.	90
SCN10A	6336	hgsc.bcm.edu;bcgsc.ca	37	3	38812863	38812863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN10A	NM_006514	exon4	c.T506C	p.L169S	.	.	90	5	103	0	.	99
SCN3A	6328	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166003251	166003251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN3A	NM_001081676	exon12	c.C1669A	p.Q557K	.	.	354	148	418	2	.	141
SCN4B	6330	bcgsc.ca	37	11	118011997	118011997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN4B	NM_174934	exon4	c.T518C	p.V173A	.	.	125	7	97	1	.	91
SCN5A	6331	hgsc.bcm.edu	37	3	38640487	38640487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SCN5A	NM_001160160	exon13	c.T1945C	p.C649R	.	.	84	4	78	0	.	98
SEC23IP	11196	bcgsc.ca	37	10	121692673	121692673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SEC23IP	NM_007190	exon17	c.G2915A	p.C972Y	.	.	65	4	100	0	.	93
SEMA4A	64218	broad.mit.edu	37	1	156146735	156146735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SEMA4A	NM_001193300	exon15	c.T2233C	p.S745P	.	.	115	5	57	0	.	228
SEMA5A	9037	hgsc.bcm.edu	37	5	9119234	9119234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SEMA5A	NM_003966	exon15	c.T1801C	p.W601R	.	.	140	7	122	0	.	91
SETD5	55209	hgsc.bcm.edu	37	3	9517690	9517690	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SETD5	NM_001080517	exon23	c.C4244G	p.P1415R	.	.	92	4	123	0	.	70
SH3BP2	6452	hgsc.bcm.edu	37	4	2824742	2824742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SH3BP2	NM_001145856	exon3	c.T388C	p.F130L	.	.	95	4	128	0	.	514
SH3TC2	79628	hgsc.bcm.edu	37	5	148407517	148407517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SH3TC2	NM_024577	exon11	c.A1778G	p.E593G	.	.	81	4	81	0	.	92
SHD	56961	bcgsc.ca	37	19	4283148	4283148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SHD	NM_020209	exon3	c.G501T	p.Q167H	.	.	49	4	97	0	.	90
SHROOM2	357	bcgsc.ca	37	X	9866236	9866236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SHROOM2	NM_001649	exon5	c.T2797C	p.S933P	.	.	60	4	67	0	.	198
SIGLEC10	89790	bcgsc.ca	37	19	51917013	51917013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SIGLEC10	NM_033130	exon10	c.A1774G	p.S592G	.	.	135	5	162	0	.	91
SKIV2L2	23517	hgsc.bcm.edu	37	5	54674959	54674959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SKIV2L2	NM_015360	exon18	c.A1988G	p.K663R	.	.	36	4	32	0	.	92
SLC22A18AS	5003	bcgsc.ca	37	11	2909432	2909432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_007105	exon4	c.T740C	p.V247A	.	.	90	5	148	0	.	.
SLC22A23	63027	hgsc.bcm.edu;bcgsc.ca	37	6	3290023	3290023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC22A23	NM_015482	exon6	c.A1288G	p.N430D	.	.	84	4	88	0	.	23
SLC24A1	9187	bcgsc.ca	37	15	65932024	65932024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_004727	exon4	c.T2036C	p.L679P	.	.	79	5	85	0	.	.
SLC25A16	8034	bcgsc.ca	37	10	70253271	70253271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC25A16	NM_152707	exon5	c.T478C	p.F160L	.	.	145	5	284	0	.	90
SLC35A5	55032	bcgsc.ca	37	3	112300127	112300127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC35A5	NM_017945	exon6	c.A1163G	p.E388G	.	.	127	5	168	1	.	91
SLC35C1	55343	bcgsc.ca	37	11	45827515	45827515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC35C1	NM_018389	exon1	c.A163G	p.M55V	.	.	95	5	114	0	.	90
SLC39A14	23516	bcgsc.ca	37	8	22273287	22273287	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC39A14	NM_001135153	exon6	c.T756C	p.H252H	.	.	81	4	115	0	.	90
SLC44A4	80736	bcgsc.ca	37	6	31833496	31833496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC44A4	NM_025257	exon15	c.T1553C	p.I518T	.	.	55	4	66	0	.	156
SLC4A3	6508	hgsc.bcm.edu	37	2	220506390	220506390	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC4A3	NM_201574	exon23	c.T3720C	p.A1240A	.	.	115	5	129	0	.	157
SLC5A10	125206	bcgsc.ca	37	17	18918360	18918360	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC5A10	NM_001042450	exon11	c.1091-2A>G	.	.	.	195	6	202	0	.	91
SLC5A3	6526	bcgsc.ca	37	21	35469497	35469497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC5A3	NM_006933	exon2	c.A2000G	p.K667R	.	.	126	7	127	0	.	92
SLC5A5	6528	bcgsc.ca	37	19	17985339	17985339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC5A5	NM_000453	exon3	c.C460T	p.L154F	.	.	56	4	98	0	.	93
SLC7A6OS	84138	broad.mit.edu	37	16	68338113	68338113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC7A6OS	NM_032178	exon3	c.T494C	p.L165P	.	.	141	5	271	1	.	91
SLC9A3	6550	hgsc.bcm.edu	37	5	488453	488453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLC9A3	NM_004174	exon3	c.T653C	p.L218P	.	.	89	4	83	0	.	90
SLC9C2	284525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173526509	173526509	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_178527	exon10	c.C1185T	p.L395L	.	.	1002	105	366	1	.	.
SLIT1	6585	bcgsc.ca	37	10	98807492	98807492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SLIT1	NM_003061	exon16	c.A1589G	p.K530R	.	.	68	4	122	0	.	94
SMARCA1	6594	bcgsc.ca	37	X	128649925	128649925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SMARCA1	NM_139035	exon4	c.T475C	p.S159P	.	.	234	6	266	0	.	230
SMG9	56006	bcgsc.ca	37	19	44251865	44251865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SMG9	NM_019108	exon4	c.A410G	p.K137R	.	.	92	5	106	0	.	91
SMTN	6525	bcgsc.ca	37	22	31489851	31489851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SMTN	NM_001207017	exon12	c.A1876G	p.S626G	.	.	28	4	49	0	.	154
SNX15	29907	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64806100	64806100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SNX15	NM_013306	exon7	c.T721A	p.S241T	.	.	132	44	138	1	.	227
SNX21	90203	bcgsc.ca	37	20	44469299	44469299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SNX21	NM_033421	exon4	c.G469A	p.G157S	.	.	67	4	56	0	.	290
SNX24	28966	bcgsc.ca	37	5	122337124	122337124	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SNX24	NM_014035	exon5	c.A369G	p.E123E	.	.	247	8	247	1	.	226
SOCS6	9306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67992658	67992658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SOCS6	NM_004232	exon2	c.G754A	p.A252T	.	.	201	71	209	0	.	721
SON	6651	bcgsc.ca	37	21	34927259	34927259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SON	NM_032195	exon3	c.A5722G	p.R1908G	.	.	61	4	61	0	.	97
SORL1	6653	bcgsc.ca	37	11	121420682	121420682	+	Missense_Mutation	SNP	A	A	G	rs143781243	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SORL1	NM_003105	exon15	c.A2065G	p.K689E	.	.	124	5	106	0	A|1.000;C|0.000	228
SORL1	6653	bcgsc.ca	37	11	121474968	121474968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SORL1	NM_003105	exon33	c.T4586C	p.V1529A	.	.	80	4	73	0	.	228
SP100	6672	bcgsc.ca	37	2	231338118	231338118	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SP100	NM_001080391	exon16	c.A1509G	p.E503E	.	.	176	6	182	0	.	94
SP110	3431	bcgsc.ca	37	2	231067333	231067333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SP110	NM_001185015	exon10	c.A1028G	p.K343R	.	.	316	8	296	1	.	155
SPATA13	221178	bcgsc.ca	37	13	24861035	24861035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPATA13	NM_001166271	exon7	c.G2614A	p.E872K	.	.	69	4	63	0	.	229
SPATA17	128153	hgsc.bcm.edu	37	1	217947703	217947703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPATA17	NM_138796	exon7	c.A547G	p.R183G	.	.	90	4	94	0	.	69
SPATS1	221409	broad.mit.edu;bcgsc.ca	37	6	44328192	44328192	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPATS1	NM_145026	exon4	c.T297C	p.A99A	.	.	89	6	107	0	.	91
SPEN	23013	broad.mit.edu;ucsc.edu	37	1	16260812	16260812	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPEN	NM_015001	exon11	c.C8077T	p.L2693L	.	.	21	3	54	0	.	298
SPOCD1	90853	hgsc.bcm.edu	37	1	32280899	32280899	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPOCD1	NM_144569	exon2	c.A36G	p.T12T	.	.	59	4	102	0	.	158
SPTLC2	9517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78021725	78021725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SPTLC2	NM_004863	exon8	c.T1094A	p.L365Q	.	.	138	46	93	0	.	92
SRSF3	6428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36564637	36564637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SRSF3	NM_003017	exon2	c.A98G	p.Y33C	.	.	160	53	187	0	.	227
SSPO	23145	broad.mit.edu	37	7	149506138	149506138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_198455	exon63	c.G9130A	p.G3044R	.	.	134	6	153	0	.	.
ST18	9705	bcgsc.ca	37	8	53028909	53028909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ST18	NM_014682	exon25	c.A2929G	p.S977G	.	.	336	8	319	0	.	95
ST3GAL4	6484	bcgsc.ca	37	11	126279164	126279164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ST3GAL4	NM_001254757	exon9	c.T629C	p.V210A	.	.	123	6	162	0	.	90
ST6GAL2	84620	hgsc.bcm.edu;bcgsc.ca	37	2	107459744	107459744	+	Silent	SNP	G	G	A	rs144265287	alternate_allele	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ST6GAL2	NM_032528	exon2	c.C690T	p.T230T	.	.	51	4	31	0	G|1.000;C|0.000	191
ST6GALNAC5	81849	hgsc.bcm.edu	37	1	77334294	77334294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ST6GALNAC5	NM_030965	exon2	c.A128G	p.Q43R	.	.	191	7	62	0	.	92
STK40	83931	hgsc.bcm.edu	37	1	36814304	36814304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	STK40	NM_032017	exon8	c.A736G	p.S246G	.	.	92	4	94	0	.	83
SUGP2	10147	bcgsc.ca	37	19	19121089	19121089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SUGP2	NM_014884	exon5	c.A1913G	p.Q638R	.	.	119	6	171	3	.	91
SUPT16H	11198	bcgsc.ca	37	14	21827686	21827686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SUPT16H	NM_007192	exon19	c.A2258G	p.K753R	.	.	165	7	195	0	.	90
SV2B	9899	bcgsc.ca	37	15	91769494	91769494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SV2B	NM_014848	exon3	c.A1G	p.M1V	.	.	80	4	105	0	.	97
SWI5	375757	broad.mit.edu	37	9	131038457	131038457	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001040011	exon1	c.T33A	p.R11R	.	.	60	4	76	0	.	.
SYNC	81493	bcgsc.ca	37	1	33161502	33161502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SYNC	NM_001161708	exon2	c.A197G	p.D66G	.	.	51	4	122	1	.	91
SYNE1	23345	bcgsc.ca	37	6	152674836	152674836	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SYNE1	NM_182961	exon68	c.A10970G	p.E3657G	.	.	164	5	141	0	.	607
SYNE2	23224	bcgsc.ca	37	14	64542816	64542816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SYNE2	NM_182914	exon54	c.A11020G	p.K3674E	.	.	286	7	283	0	.	164
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64596547	64596547	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	SYNE2	NM_182914	exon75	c.G14067A	p.V4689V	.	.	117	45	124	0	.	164
TACC2	10579	ucsc.edu;bcgsc.ca	37	10	123842397	123842397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TACC2	NM_206862	exon4	c.G382A	p.A128T	.	.	39	4	76	0	.	296
TBC1D9B	23061	hgsc.bcm.edu;bcgsc.ca	37	5	179320450	179320450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TBC1D9B	NM_198868	exon5	c.T595C	p.W199R	.	.	72	4	64	0	.	154
TBX22	50945	bcgsc.ca	37	X	79286258	79286258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TBX22	NM_016954	exon8	c.C1211A	p.A404D	.	.	114	6	116	0	.	628
TCF19	6941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31129627	31129627	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TCF19	NM_001077511	exon3	c.G642T	p.T214T	.	.	41	7	40	0	.	90
TCF21	6943	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	134212868	134212868	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TCF21	NM_003206	exon2	c.G468A	p.V156V	.	.	55	24	53	0	.	90
TDP1	55775	bcgsc.ca	37	14	90451526	90451526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TDP1	NM_018319	exon10	c.A1103G	p.D368G	.	.	438	10	486	2	.	92
TEX14	56155	broad.mit.edu	37	17	56661927	56661927	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TEX14	NM_001201457	exon19	c.A3123G	p.Q1041Q	.	.	602	8	557	0	.	810
TFAP2A	7020	bcgsc.ca	37	6	10410132	10410132	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TFAP2A	NM_001032280	exon3	c.462+2T>A	.	.	.	71	4	64	0	.	91
TFB1M	51106	bcgsc.ca	37	6	155581530	155581530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TFB1M	NM_016020	exon6	c.A671G	p.D224G	.	.	123	5	116	1	.	91
TFB2M	64216	hgsc.bcm.edu	37	1	246727677	246727677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TFB2M	NM_022366	exon2	c.A373G	p.S125G	.	.	90	4	128	0	.	91
TGFB2	7042	hgsc.bcm.edu;bcgsc.ca	37	1	218578636	218578636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TGFB2	NM_001135599	exon3	c.A556G	p.K186E	.	.	61	4	135	0	.	710
TGFBRAP1	9392	hgsc.bcm.edu	37	2	105885829	105885829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TGFBRAP1	NM_004257	exon11	c.T2306C	p.F769S	.	.	118	4	123	0	.	91
THADA	63892	hgsc.bcm.edu	37	2	43519292	43519292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	THADA	NM_001083953	exon33	c.A4888G	p.T1630A	.	.	104	5	120	0	.	228
TLR6	10333	hgsc.bcm.edu	37	4	38830367	38830367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TLR6	NM_006068	exon2	c.C728T	p.S243L	.	.	86	4	132	0	.	524
TM9SF1	10548	bcgsc.ca	37	14	24662182	24662182	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TM9SF1	NM_001014842	exon3	c.G639A	p.V213V	.	.	107	5	111	0	.	91
TM9SF3	56889	bcgsc.ca	37	10	98321760	98321760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TM9SF3	NM_020123	exon4	c.A557G	p.N186S	.	.	89	4	134	0	.	90
TMEM131	23505	hgsc.bcm.edu;bcgsc.ca	37	2	98410005	98410005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM131	NM_015348	exon30	c.T3398C	p.L1133P	.	.	104	7	107	0	.	74
TMEM198	130612	bcgsc.ca	37	2	220412321	220412321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM198	NM_001005209	exon3	c.A260G	p.E87G	.	.	152	6	197	3	.	23
TMEM2	23670	bcgsc.ca	37	9	74349901	74349901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM2	NM_013390	exon6	c.T1214C	p.L405P	.	.	104	5	145	0	.	92
TMEM64	169200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91643868	91643868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMEM64	NM_001008495	exon2	c.T863C	p.L288P	.	.	307	53	141	0	.	90
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	69097023	69097023	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TMPRSS11B	NM_182502	exon7	c.584delC	p.A195fs	.	.	244	76	187	0	.	91
TNIP1	10318	hgsc.bcm.edu	37	5	150436496	150436496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TNIP1	NM_001252385	exon6	c.A458G	p.E153G	.	.	61	5	38	0	.	91
TOPORS	10210	bcgsc.ca	37	9	32543100	32543100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TOPORS	NM_005802	exon3	c.T1423C	p.S475P	.	.	158	5	223	1	.	230
TPSG1	25823	broad.mit.edu;bcgsc.ca	37	16	1275250	1275250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TPSG1	NM_012467	exon1	c.G3A	p.M1I	.	.	231	6	297	0	.	90
TRAIP	10293	bcgsc.ca	37	3	49878489	49878489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRAIP	NM_005879	exon8	c.A634G	p.K212E	.	.	171	7	195	1	.	849
TRANK1	9881	hgsc.bcm.edu	37	3	36874860	36874860	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRANK1	NM_014831	exon21	c.C6082G	p.Q2028E	.	.	99	4	87	0	.	24
TRAPPC8	22878	bcgsc.ca	37	18	29497590	29497590	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRAPPC8	NM_014939	exon3	c.T393C	p.L131L	.	.	80	5	91	0	.	159
TRERF1	55809	bcgsc.ca	37	6	42232497	42232497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRERF1	NM_033502	exon7	c.T1580C	p.L527P	.	.	105	5	133	0	.	230
TRIM22	10346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5730736	5730736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIM22	NM_006074	exon8	c.G1355A	p.G452D	.	.	321	83	314	0	.	90
TRIM66	9866	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8664672	8664672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIM66	NM_014818	exon8	c.T671C	p.I224T	.	.	30	14	53	0	.	68
TRIO	7204	hgsc.bcm.edu	37	5	14508302	14508302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon57	c.A9065G	p.K3022R	.	.	64	4	90	0	.	562
TRIO	7204	hgsc.bcm.edu;bcgsc.ca	37	5	14474101	14474101	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon40	c.5980-2A>G	.	.	.	92	4	110	0	.	562
TRIO	7204	hgsc.bcm.edu;bcgsc.ca	37	5	14502746	14502746	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIO	NM_007118	exon54	c.T8391C	p.S2797S	.	.	69	5	60	0	.	562
TRIOBP	11078	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38121089	38121089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIOBP	NM_001039141	exon7	c.T2526A	p.D842E	.	.	255	99	331	0	.	136
TRIP4	9325	bcgsc.ca	37	15	64702002	64702002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRIP4	NM_016213	exon7	c.A1018G	p.N340D	.	.	64	4	62	0	.	188
TRPM3	80036	bcgsc.ca	37	9	73206018	73206018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRPM3	NM_001007471	exon21	c.A3116G	p.K1039R	.	.	222	6	256	0	.	521
TRPV2	51393	bcgsc.ca	37	17	16323542	16323542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TRPV2	NM_016113	exon3	c.T314C	p.L105P	.	.	80	4	79	0	.	91
TSEN34	79042	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54697194	54697194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TSEN34	NM_024075	exon5	c.C910G	p.L304V	.	.	92	17	127	0	.	90
TSPAN8	7103	bcgsc.ca	37	12	71519154	71519154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TSPAN8	NM_004616	exon9	c.T674C	p.V225A	.	.	180	6	190	0	.	93
TTC3	7267	bcgsc.ca	37	21	38569972	38569972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TTC3	NM_001001894	exon43	c.T5681C	p.I1894T	.	.	158	5	201	0	.	590
TTC4	7268	hgsc.bcm.edu;bcgsc.ca	37	1	55194027	55194027	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TTC4	NM_004623	exon6	c.A603G	p.E201E	.	.	165	7	72	0	.	90
TTN	7273	bcgsc.ca	37	2	179489350	179489350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TTN	NM_001267550	exon242	c.T44657C	p.F14886S	.	.	162	5	205	0	.	636
TXNL1	9352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54293689	54293689	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	TXNL1	NM_004786	exon3	c.99-1G>T	.	.	.	227	73	215	0	.	90
UBA7	7318	bcgsc.ca	37	3	49846876	49846876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBA7	NM_003335	exon17	c.T2110C	p.F704L	.	.	154	7	200	2	.	228
UBE2J2	118424	hgsc.bcm.edu	37	1	1192490	1192490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBE2J2	NM_194315	exon6	c.A344G	p.D115G	.	.	48	4	93	0	.	90
UBE3A	7337	bcgsc.ca	37	15	25605554	25605554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBE3A	NM_000462	exon8	c.G1738A	p.E580K	.	.	85	4	145	0	.	660
UBQLN4	56893	hgsc.bcm.edu	37	1	156011369	156011371	+	In_Frame_Del	DEL	CGT	CGT	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	CGT	CGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBQLN4	NM_020131	exon10	c.1558_1560del	p.520_520del	.	.	450	45	162	0	.	92
UBR4	23352	hgsc.bcm.edu	37	1	19446726	19446726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBR4	NM_020765	exon69	c.A10258G	p.N3420D	.	.	62	4	136	0	.	612
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19518865	19518865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UBR4	NM_020765	exon11	c.A1211G	p.Q404R	.	.	64	4	114	0	.	612
UFSP2	55325	hgsc.bcm.edu	37	4	186336995	186336995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UFSP2	NM_018359	exon5	c.G360A	p.M120I	.	.	79	4	126	0	.	90
UGT2B28	54490	bcgsc.ca	37	4	70152481	70152481	+	Silent	SNP	A	A	G	rs141618560		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UGT2B28	NM_053039	exon3	c.A882G	p.E294E	.	.	388	17	356	3	A|1.000;G|0.000	91
UGT2B28	54490	bcgsc.ca	37	4	70152499	70152499	+	Silent	SNP	T	T	A	rs41292341	byfrequency	TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UGT2B28	NM_053039	exon3	c.T900A	p.G300G	.	.	402	15	360	3	T|0.972;A|0.028	91
UHRF2	115426	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	6482012	6482012	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UHRF2	NM_152896	exon8	c.T1305G	p.R435R	.	.	395	136	477	15	.	721
UNC13A	23025	bcgsc.ca	37	19	17778933	17778933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UNC13A	NM_001080421	exon6	c.A461G	p.Q154R	.	.	82	4	120	0	.	25
UNC13C	440279	bcgsc.ca	37	15	54556432	54556432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UNC13C	NM_001080534	exon7	c.A3515G	p.K1172R	.	.	160	5	293	0	.	51
UROS	7390	bcgsc.ca	37	10	127500859	127500859	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UROS	NM_000375	exon6	c.245-2A>G	.	.	.	111	5	204	0	.	90
USH2A	7399	hgsc.bcm.edu	37	1	216373309	216373309	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USH2A	NM_007123	exon17	c.C3471A	p.I1157I	.	.	116	5	189	0	.	115
USHBP1	83878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17373479	17373479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USHBP1	NM_031941	exon4	c.G524A	p.R175H	.	.	26	17	73	0	.	91
USP19	10869	hgsc.bcm.edu	37	3	49149789	49149789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USP19	NM_001199161	exon19	c.A2693G	p.Q898R	.	.	119	5	109	0	.	663
USP40	55230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234431822	234431822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USP40	NM_018218	exon15	c.A2228G	p.D743G	.	.	285	87	296	1	.	455
USP47	55031	bcgsc.ca	37	11	11959917	11959917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USP47	NM_017944	exon17	c.A1987G	p.K663E	.	.	96	4	120	0	.	660
USP47	55031	bcgsc.ca	37	11	11964228	11964228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	USP47	NM_017944	exon19	c.A2456G	p.N819S	.	.	65	4	81	0	.	660
UTRN	7402	ucsc.edu;bcgsc.ca	37	6	145093056	145093056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	UTRN	NM_007124	exon58	c.A8509G	p.T2837A	.	.	46	5	59	0	.	95
VARS2	57176	bcgsc.ca	37	6	30891160	30891160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VARS2	NM_001167734	exon25	c.A2434G	p.I812V	.	.	68	4	106	1	.	26
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82807955	82807955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VCAN	NM_004385	exon6	c.T782C	p.F261S	.	.	65	5	59	0	.	238
VGLL3	389136	hgsc.bcm.edu	37	3	87027732	87027732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VGLL3	NM_016206	exon2	c.T347C	p.L116P	.	.	117	6	68	0	.	90
VPS26B	112936	bcgsc.ca	37	11	134114927	134114927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VPS26B	NM_052875	exon5	c.A817G	p.N273D	.	.	48	4	57	0	.	90
VWA3B	200403	hgsc.bcm.edu;bcgsc.ca	37	2	98750292	98750292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	VWA3B	NM_144992	exon7	c.A878G	p.H293R	.	.	78	4	89	0	.	139
WBP5	51186	bcgsc.ca	37	X	102612786	102612786	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WBP5	NM_001006614	exon2	c.A174G	p.E58E	.	.	119	5	162	0	.	108
WDFY1	57590	hgsc.bcm.edu;bcgsc.ca	37	2	224746759	224746759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDFY1	NM_020830	exon10	c.T964C	p.C322R	.	.	72	4	58	0	.	226
WDR11	55717	bcgsc.ca	37	10	122659623	122659623	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR11	NM_018117	exon20	c.A2598G	p.G866G	.	.	129	5	230	2	.	226
WDR33	55339	bcgsc.ca	37	2	128522284	128522284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR33	NM_001006622	exon6	c.C744A	p.H248Q	.	.	155	0	271	0	.	90
WDR33	55339	hgsc.bcm.edu	37	2	128522284	128522336	+	Frame_Shift_Del	DEL	GTGCAGAAAGTTTCCCAGAAACTGACAGAGCCCATGCATCTCTGCACCCAGAA	GTGCAGAAAGTTTCCCAGAAACTGACAGAGCCCATGCATCTCTGCACCCAGAA	-	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	GTGCAGAAAGTTTCCCAGAAACTGACAGAGCCCATGCATCTCTGCACCCAGAA	GTGCAGAAAGTTTCCCAGAAACTGACAGAGCCCATGCATCTCTGCACCCAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR33	NM_001006622	exon6	c.692_744del	p.231_248del	.	.	194	16	277	0	.	90
WDR5B	54554	hgsc.bcm.edu;bcgsc.ca	37	3	122133628	122133628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR5B	NM_019069	exon1	c.G748A	p.G250S	.	.	114	5	169	0	.	93
WDR65	149465	bcgsc.ca	37	1	43687774	43687774	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WDR65	NM_001195831	exon15	c.2342-2A>G	.	.	.	175	6	144	1	.	91
WFDC10B	280664	bcgsc.ca	37	20	44333606	44333606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WFDC10B	NM_172131	exon1	c.A25G	p.S9G	.	.	90	4	66	0	.	91
WNK1	65125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1009715	1009715	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WNK1	NM_001184985	exon26	c.A7302C	p.P2434P	.	.	143	60	159	0	.	916
WNK2	65268	bcgsc.ca	37	9	95997169	95997169	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WNK2	NM_006648	exon4	c.C1155T	p.C385C	.	.	143	7	153	0	.	765
WSCD2	9671	bcgsc.ca	37	12	108589912	108589912	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WSCD2	NM_014653	exon2	c.A303G	p.R101R	.	.	88	4	77	0	.	136
WSCD2	9671	bcgsc.ca	37	12	108618589	108618589	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WSCD2	NM_014653	exon5	c.C756T	p.A252A	.	.	82	4	77	0	.	136
WWC2	80014	hgsc.bcm.edu	37	4	184169911	184169911	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	WWC2	NM_024949	exon7	c.T777C	p.I259I	.	.	97	5	116	0	.	93
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61706090	61706090	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	XPO1	NM_003400	exon25	c.T3081G	p.G1027G	.	.	189	59	241	0	.	229
YTHDF1	54915	bcgsc.ca	37	20	61845268	61845268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	YTHDF1	NM_017798	exon3	c.A80G	p.D27G	.	.	88	4	145	0	.	92
ZBTB18	10472	hgsc.bcm.edu	37	1	244218512	244218512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_205768	exon2	c.G1436A	p.W479X	.	.	76	4	105	0	.	.
ZBTB49	166793	bcgsc.ca	37	4	4314838	4314838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZBTB49	NM_145291	exon5	c.A1373G	p.K458R	.	.	223	6	235	1	.	92
ZBTB8B	728116	hgsc.bcm.edu	37	1	32950745	32950745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	NM_001145720	exon4	c.G1214T	p.R405I	.	.	113	5	165	0	.	.
ZC3H7A	29066	bcgsc.ca	37	16	11862944	11862944	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZC3H7A	NM_014153	exon11	c.C1116T	p.S372S	.	.	83	4	101	0	.	94
ZDHHC9	51114	ucsc.edu;bcgsc.ca	37	X	128946713	128946713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZDHHC9	NM_001008222	exon7	c.A758G	p.N253S	.	.	42	4	43	0	.	131
ZFHX3	463	bcgsc.ca	37	16	72821266	72821266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFHX3	NM_006885	exon10	c.T10909C	p.S3637P	.	.	78	4	126	2	.	72
ZFP112	7771	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44833097	44833097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFP112	NM_001083335	exon5	c.G1231A	p.E411K	.	.	153	50	223	0	.	95
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	32444759	32444759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFR	NM_016107	exon1	c.T6G	p.I2M	.	.	326	36	223	0	.	90
ZFYVE1	53349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73437723	73437723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFYVE1	NM_021260	exon12	c.A2201G	p.K734R	.	.	94	33	90	0	.	91
ZFYVE26	23503	ucsc.edu	37	14	68246991	68246991	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZFYVE26	NM_015346	exon23	c.A4641G	p.P1547P	.	.	45	4	62	0	.	162
ZNF10	7556	bcgsc.ca	37	12	133732509	133732509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF10	NM_015394	exon5	c.T677C	p.I226T	.	.	185	6	180	0	.	154
ZNF169	169841	bcgsc.ca	37	9	97062528	97062528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF169	NM_194320	exon5	c.C688T	p.H230Y	.	.	82	4	103	0	.	92
ZNF19	7567	bcgsc.ca	37	16	71510102	71510102	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF19	NM_006961	exon6	c.A348G	p.S116S	.	.	133	6	257	0	.	90
ZNF235	9310	bcgsc.ca	37	19	44793059	44793059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF235	NM_004234	exon5	c.G529T	p.G177W	.	.	166	6	185	0	.	137
ZNF254	9534	bcgsc.ca	37	19	24309560	24309560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF254	NM_203282	exon4	c.T758C	p.L253P	.	.	123	5	133	1	.	90
ZNF292	23036	bcgsc.ca	37	6	87964881	87964881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF292	NM_015021	exon8	c.G1534T	p.G512C	.	.	94	4	122	0	.	72
ZNF318	24149	bcgsc.ca	37	6	43322882	43322882	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF318	NM_014345	exon4	c.T2190C	p.S730S	.	.	165	7	213	0	.	157
ZNF423	23090	bcgsc.ca	37	16	49671139	49671139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF423	NM_015069	exon4	c.T1924A	p.S642T	.	.	80	6	195	0	.	228
ZNF441	126068	bcgsc.ca	37	19	11892364	11892364	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF441	NM_152355	exon4	c.A1725G	p.R575R	.	.	59	4	82	0	.	69
ZNF473	25888	bcgsc.ca	37	19	50548600	50548600	+	Silent	SNP	A	A	G	rs55716951		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF473	NM_015428	exon5	c.A900G	p.P300P	.	.	90	4	119	0	A|1.000;G|0.000	91
ZNF568	374900	bcgsc.ca	37	19	37441325	37441325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF568	NM_198539	exon7	c.G1270A	p.G424R	.	.	66	4	89	0	.	136
ZNF592	9640	bcgsc.ca	37	15	85326002	85326002	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF592	NM_014630	exon4	c.A96G	p.T32T	.	.	132	5	162	1	.	96
ZNF620	253639	bcgsc.ca	37	3	40557682	40557682	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF620	NM_175888	exon5	c.A597G	p.G199G	.	.	247	7	268	4	.	91
ZNF627	199692	bcgsc.ca	37	19	11727967	11727967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF627	NM_145295	exon4	c.C649A	p.H217N	.	.	66	4	130	0	.	91
ZNF627	199692	bcgsc.ca	37	19	11728335	11728335	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF627	NM_145295	exon4	c.G1017A	p.V339V	.	.	85	4	148	0	.	91
ZNF679	168417	bcgsc.ca	37	7	63726900	63726900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF679	NM_153363	exon5	c.A889G	p.T297A	.	.	87	4	87	0	.	1
ZNF702P	79986	ucsc.edu;bcgsc.ca	37	19	53484146	53484146	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	45	4	46	0	.	.
ZNF75D	7626	bcgsc.ca	37	X	134421154	134421154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF75D	NM_007131	exon6	c.A1448G	p.K483R	.	.	172	6	233	0	.	130
ZNF837	116412	ucsc.edu	37	19	58879233	58879233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF837	NM_138466	exon3	c.C1467A	p.S489R	.	.	43	4	23	0	.	68
ZNF93	81931	bcgsc.ca	37	19	20045302	20045302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZNF93	NM_031218	exon4	c.A1538G	p.E513G	.	.	19	3	37	0	.	91
ZSCAN29	146050	bcgsc.ca	37	15	43661852	43661852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	ZSCAN29	NM_152455	exon1	c.A260G	p.E87G	.	.	168	6	264	0	.	91
IGLV5-48	28780	broad.mit.edu	37	22	22707509	22707510	+	RNA	DNP	CC	CC	AA	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	.	.	.	.	.	.	.	.	
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209217489	209217490	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-BC-A10W-01A-11D-A12Z-10	TCGA-BC-A10W-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9681d501-d5be-4b4d-8587-69b0a4f9eb3a	16c0da05-13b9-4c80-947f-2532f2cbf61a	.	.	.	.	.	p.G1943S	.	.	.	.	.	.	.	
