Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	bcgsc.ca	37	12	8995924	8995924	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	A2ML1	NM_144670	exon12	c.A1443G	p.A481A	.	.	80	4	99	0	.	93
AATK	9625	bcgsc.ca	37	17	79094506	79094506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AATK	NM_001080395	exon11	c.T3230C	p.V1077A	.	.	81	8	56	2	.	933
ABCA13	154664	bcgsc.ca	37	7	48317928	48317928	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABCA13	NM_152701	exon18	c.T7137C	p.T2379T	.	.	137	5	184	0	.	521
ABCA7	10347	bcgsc.ca	37	19	1056451	1056451	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABCA7	NM_019112	exon33	c.C4539T	p.L1513L	.	.	54	4	63	0	.	98
ABCB4	5244	bcgsc.ca	37	7	87074217	87074217	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABCB4	NM_018850	exon10	c.A1080G	p.A360A	.	.	51	4	49	0	.	96
ABCC10	89845	bcgsc.ca	37	6	43410715	43410715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABCC10	NM_001198934	exon10	c.A2234G	p.E745G	.	.	38	4	53	0	.	96
ABCC9	10060	bcgsc.ca	37	12	21954075	21954075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABCC9	NM_020297	exon38	c.T4553C	p.V1518A	.	.	75	4	138	0	.	96
ABCF2	10061	bcgsc.ca	37	7	150913080	150913080	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABCF2	NM_005692	exon12	c.T1374C	p.S458S	.	.	172	7	150	0	.	90
ABLIM2	84448	ucsc.edu;bcgsc.ca	37	4	7968764	7968764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ABLIM2	NM_001130083	exon21	c.G1891A	p.A631T	.	.	30	4	41	0	.	47
ACOT9	23597	bcgsc.ca	37	X	23724785	23724785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ACOT9	NM_001037171	exon11	c.A802G	p.T268A	.	.	346	11	351	0	.	133
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	78472115	78472136	+	Frame_Shift_Del	DEL	TCAGGTCGCTGGTGGGAGAGGG	TCAGGTCGCTGGTGGGAGAGGG	-	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	TCAGGTCGCTGGTGGGAGAGGG	TCAGGTCGCTGGTGGGAGAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ACSBG1	NM_015162	exon10	c.1254_1261del	p.418_421del	.	.	162	14	125	0	.	91
ACTL6B	51412	bcgsc.ca	37	7	100244849	100244849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ACTL6B	NM_016188	exon9	c.A818G	p.E273G	.	.	68	5	149	0	.	91
ACVRL1	94	bcgsc.ca	37	12	52309939	52309939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ACVRL1	NM_000020	exon8	c.T1168C	p.F390L	.	.	76	4	67	0	.	521
ADAM12	8038	bcgsc.ca	37	10	127797222	127797222	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ADAM12	NM_021641	exon8	c.A690G	p.Q230Q	.	.	91	4	236	1	.	716
ADAMTSL1	92949	bcgsc.ca	37	9	18908525	18908525	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ADAMTSL1	NM_001040272	exon29	c.T5268C	p.C1756C	.	.	90	5	61	0	.	230
ADAMTSL3	57188	bcgsc.ca	37	15	84566744	84566744	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ADAMTSL3	NM_207517	exon14	c.T1602C	p.C534C	.	.	173	6	120	0	.	1153
ADCY3	109	bcgsc.ca	37	2	25064511	25064511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ADCY3	NM_004036	exon4	c.T982C	p.F328L	.	.	192	7	199	0	.	94
ADPGK	83440	bcgsc.ca	37	15	73067308	73067308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ADPGK	NM_031284	exon2	c.T364C	p.F122L	.	.	162	7	134	0	.	90
ADRA2C	152	bcgsc.ca	37	4	3769470	3769470	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ADRA2C	NM_000683	exon1	c.C1137A	p.R379R	.	.	71	4	123	0	.	522
AFF2	2334	bcgsc.ca	37	X	147919215	147919215	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AFF2	NM_002025	exon5	c.T1131C	p.T377T	.	.	194	6	185	0	.	135
AFF2	2334	bcgsc.ca	37	X	148059954	148059954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AFF2	NM_002025	exon18	c.A3539G	p.K1180R	.	.	147	5	136	1	.	135
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147744245	147744245	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AFF2	NM_002025	exon3	c.T997A	p.S333T	.	.	309	288	357	1	.	135
AGGF1	55109	bcgsc.ca	37	5	76344764	76344764	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AGGF1	NM_018046	exon8	c.A1317G	p.E439E	.	.	93	4	98	0	.	117
AGL	178	bcgsc.ca	37	1	100356861	100356861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AGL	NM_000644	exon22	c.G2898T	p.M966I	.	.	189	6	184	0	.	92
AGO2	27161	bcgsc.ca	37	8	141569628	141569628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_012154	exon6	c.T656C	p.V219A	.	.	75	4	92	0	.	.
AGXT2	64902	bcgsc.ca	37	5	35032860	35032860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AGXT2	NM_031900	exon7	c.T746C	p.I249T	.	.	128	6	105	0	.	94
AHCYL1	10768	bcgsc.ca	37	1	110555054	110555054	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AHCYL1	NM_006621	exon4	c.G447A	p.V149V	.	.	95	5	97	1	.	91
ALDH1L2	160428	bcgsc.ca	37	12	105440682	105440682	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ALDH1L2	NM_001034173	exon14	c.A1752G	p.P584P	.	.	221	6	237	2	.	91
ALG2	85365	bcgsc.ca	37	9	101980818	101980818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ALG2	NM_033087	exon2	c.G649T	p.D217Y	.	.	241	7	236	0	.	92
ALMS1	7840	bcgsc.ca	37	2	73716763	73716763	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ALMS1	NM_015120	exon10	c.T7674C	p.G2558G	.	.	99	4	128	0	.	142
ALS2CR11	151254	bcgsc.ca	37	2	202430534	202430534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ALS2CR11	NM_001168217	exon9	c.A895T	p.T299S	.	.	239	7	252	0	.	155
ALS2CR8	79800	bcgsc.ca	37	2	203836231	203836231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ALS2CR8	NM_024744	exon12	c.G1101T	p.W367C	.	.	80	4	120	0	.	136
ANAPC7	51434	bcgsc.ca	37	12	110812116	110812116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ANAPC7	NM_016238	exon11	c.T1633C	p.S545P	.	.	122	7	112	0	.	226
ANKHD1	54882	bcgsc.ca	37	5	139876714	139876714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ANKHD1	NM_017747	exon15	c.A2855G	p.Q952R	.	.	183	6	140	0	.	185
ANKLE2	23141	bcgsc.ca	37	12	133331645	133331645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ANKLE2	NM_015114	exon2	c.A256G	p.K86E	.	.	84	4	76	0	.	68
ANKRD12	23253	bcgsc.ca	37	18	9256766	9256766	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ANKRD12	NM_015208	exon9	c.T3501C	p.V1167V	.	.	242	6	219	0	.	92
ANKRD24	170961	bcgsc.ca	37	19	4210358	4210358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ANKRD24	NM_133475	exon13	c.A1048G	p.R350G	.	.	136	5	119	0	.	68
ANKRD34C	390616	bcgsc.ca	37	15	79586694	79586694	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001146341	exon2	c.T1068C	p.C356C	.	.	84	4	66	0	.	.
ANKRD36BP1	84832	broad.mit.edu	37	1	168215984	168215984	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	1546	12	1025	0	.	.
AP2S1	1175	bcgsc.ca	37	19	47354021	47354021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AP2S1	NM_004069	exon1	c.G3A	p.M1I	.	.	122	6	136	0	.	90
AP4E1	23431	bcgsc.ca	37	15	51240251	51240251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AP4E1	NM_007347	exon11	c.A1211G	p.Q404R	.	.	103	5	93	0	.	90
AP4M1	9179	bcgsc.ca	37	7	99700332	99700332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AP4M1	NM_004722	exon3	c.A182G	p.H61R	.	.	75	4	142	0	.	90
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29346830	29346830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	APBA2	NM_005503	exon3	c.C743T	p.A248V	.	.	134	60	126	0	.	90
APPBP2	10513	bcgsc.ca	37	17	58571846	58571846	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	APPBP2	NM_006380	exon3	c.T360C	p.I120I	.	.	150	6	101	0	.	226
ARHGAP15	55843	bcgsc.ca	37	2	144314028	144314028	+	Missense_Mutation	SNP	A	A	G	rs111540259		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ARHGAP15	NM_018460	exon11	c.A977G	p.Q326R	.	.	138	5	180	0	A|0.500;G|0.500	653
ARHGAP24	83478	bcgsc.ca	37	4	86863343	86863343	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ARHGAP24	NM_001025616	exon5	c.T516C	p.G172G	.	.	136	6	272	2	.	227
ARHGAP32	9743	bcgsc.ca	37	11	129034290	129034290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ARHGAP32	NM_001142685	exon2	c.A149G	p.D50G	.	.	94	4	108	0	.	231
ARHGDIG	398	bcgsc.ca	37	16	332729	332729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ARHGDIG	NM_001176	exon6	c.T593C	p.V198A	.	.	74	4	69	0	.	90
ARID1B	57492	bcgsc.ca	37	6	157454335	157454335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ARID1B	NM_020732	exon8	c.C2545T	p.P849S	.	.	83	4	91	1	.	154
ARRB2	409	bcgsc.ca	37	17	4619719	4619719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ARRB2	NM_001257329	exon5	c.T173C	p.L58P	.	.	111	11	208	10	.	522
ASXL3	80816	bcgsc.ca	37	18	31318882	31318882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ASXL3	NM_030632	exon11	c.T1514C	p.M505T	.	.	82	4	135	0	.	49
ATF7IP	55729	bcgsc.ca	37	12	14577049	14577049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATF7IP	NM_018179	exon2	c.A200G	p.D67G	.	.	100	6	182	2	.	252
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19756558	19756558	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP13A1	NM_020410	exon25	c.G3402A	p.L1134L	.	.	85	53	81	0	.	138
ATP13A1	57130	ucsc.edu;bcgsc.ca	37	19	19763412	19763412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP13A1	NM_020410	exon16	c.T2218C	p.S740P	.	.	39	5	66	1	.	138
ATP1B3	483	broad.mit.edu	37	3	141595711	141595711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP1B3	NM_001679	exon1	c.C68T	p.P23L	.	.	130	6	96	0	.	90
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	84486812	84486812	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP2C2	NM_014861	exon19	c.A1900T	p.K634X	.	.	115	49	111	0	.	91
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57032145	57032145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP5B	NM_001686	exon10	c.G1552A	p.A518T	.	.	146	55	147	0	.	91
ATP6V0A2	23545	ucsc.edu	37	12	124236838	124236838	+	Nonsense_Mutation	SNP	C	C	A	rs200956453		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP6V0A2	NM_012463	exon17	c.C2064A	p.Y688X	.	.	85	15	99	12	.	92
ATP6V0D2	245972	bcgsc.ca	37	8	87155171	87155171	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP6V0D2	NM_152565	exon5	c.T627C	p.C209C	.	.	135	5	161	0	.	90
ATP6V1C2	245973	bcgsc.ca	37	2	10915187	10915187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP6V1C2	NM_001039362	exon10	c.A815G	p.K272R	.	.	75	5	97	0	.	91
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26153014	26153014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ATP8A2	NM_016529	exon21	c.A1844G	p.H615R	.	.	89	38	111	0	.	138
AUH	549	bcgsc.ca	37	9	94087677	94087677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AUH	NM_001698	exon4	c.T428C	p.L143P	.	.	167	6	191	0	.	226
AUP1	550	bcgsc.ca	37	2	74755589	74755589	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AUP1	NM_181575	exon5	c.G552C	p.V184V	.	.	90	4	81	0	.	90
AWAT1	158833	bcgsc.ca	37	X	69454577	69454577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	AWAT1	NM_001013579	exon1	c.A32G	p.Q11R	.	.	109	5	120	1	.	133
BACH1	571	bcgsc.ca	37	21	30698922	30698922	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BACH1	NM_206866	exon3	c.T777C	p.S259S	.	.	182	6	180	0	.	92
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32196897	32196897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BAI2	NM_001703	exon29	c.T3884A	p.F1295Y	.	.	175	85	163	0	.	526
BAIAP2L2	80115	bcgsc.ca	37	22	38505146	38505146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BAIAP2L2	NM_025045	exon2	c.T121C	p.F41L	.	.	86	4	66	0	.	91
BAZ1B	9031	bcgsc.ca	37	7	72857089	72857089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BAZ1B	NM_032408	exon18	c.A4060G	p.K1354E	.	.	149	5	121	0	.	159
BCS1L	617	bcgsc.ca	37	2	219526564	219526564	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BCS1L	NM_001257343	exon5	c.T543C	p.Y181Y	.	.	146	6	125	0	.	90
BCYRN1	618	bcgsc.ca	37	X	70679023	70679023	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	52	4	28	0	.	.
BDKRB1	623	bcgsc.ca	37	14	96731065	96731065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BDKRB1	NM_000710	exon3	c.T1046C	p.L349P	.	.	124	6	159	1	.	525
BIVM-ERCC5	0	bcgsc.ca	37	13	103506709	103506709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001204425	exon12	c.A1814G	p.E605G	.	.	136	6	160	0	.	.
BPHL	670	bcgsc.ca	37	6	3137635	3137635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BPHL	NM_004332	exon5	c.A572G	p.K191R	.	.	200	6	188	1	.	90
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32914712	32914712	+	Missense_Mutation	SNP	C	C	G	rs34309943	byfrequency;alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BRCA2	NM_000059	exon11	c.C6220G	p.H2074D	.	.	94	38	127	0	C|0.998;A|0.002	3153
BRSK1	84446	ucsc.edu	37	19	55798638	55798638	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BRSK1	NM_032430	exon3	c.C288T	p.L96L	.	.	45	4	91	0	.	759
BRSK1	84446	ucsc.edu;bcgsc.ca	37	19	55805701	55805701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	BRSK1	NM_032430	exon7	c.A614G	p.E205G	.	.	39	4	77	0	.	759
BTN2A3P	54718	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	rs141013110		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	314	8	196	3	C|1.000;T|0.000	.
C12orf10	60314	bcgsc.ca	37	12	53696906	53696906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C12orf10	NM_021640	exon3	c.G418A	p.G140R	.	.	77	4	88	0	.	92
C16orf58	64755	bcgsc.ca	37	16	31503550	31503550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C16orf58	NM_022744	exon11	c.T1199G	p.V400G	.	.	84	4	98	0	.	154
C16orf72	29035	bcgsc.ca	37	16	9210629	9210629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C16orf72	NM_014117	exon4	c.C688T	p.H230Y	.	.	193	6	151	0	.	153
C19orf21	126353	bcgsc.ca	37	19	757491	757491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C19orf21	NM_173481	exon2	c.A545G	p.E182G	.	.	87	4	95	0	.	91
C1orf141	400757	bcgsc.ca	37	1	67559251	67559251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C1orf141	NM_001276351	exon8	c.A640G	p.T214A	.	.	129	5	171	0	.	91
C4orf21	55345	bcgsc.ca	37	4	113469445	113469445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C4orf21	NM_018392	exon23	c.A5438G	p.Q1813R	.	.	199	6	132	0	.	90
C6orf1	221491	bcgsc.ca	37	6	34214513	34214513	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C6orf1	NM_001008704	exon5	c.T258C	p.L86L	.	.	127	5	122	0	.	90
C7orf31	136895	bcgsc.ca	37	7	25176149	25176149	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C7orf31	NM_138811	exon10	c.G1215A	p.L405L	.	.	190	6	242	0	.	90
C7orf31	136895	bcgsc.ca	37	7	25208082	25208082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	C7orf31	NM_138811	exon3	c.A137G	p.Y46C	.	.	208	6	193	0	.	90
CACNA1E	777	bcgsc.ca	37	1	181684486	181684486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CACNA1E	NM_001205293	exon9	c.T1184C	p.L395P	.	.	219	7	127	0	.	95
CACNA1H	8912	ucsc.edu;bcgsc.ca	37	16	1270989	1270989	+	Missense_Mutation	SNP	G	G	A	rs150601404		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CACNA1H	NM_021098	exon35	c.G7057A	p.V2353M	.	.	46	4	53	0	G|0.998;A|0.002	67
CACNA2D2	9254	bcgsc.ca	37	3	50418556	50418556	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CACNA2D2	NM_001174051	exon7	c.C654T	p.S218S	.	.	89	4	121	1	.	278
CADPS2	93664	bcgsc.ca	37	7	122028647	122028647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CADPS2	NM_001167940	exon23	c.T3166C	p.C1056R	.	.	190	6	203	0	.	94
CALN1	83698	bcgsc.ca	37	7	71488734	71488734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CALN1	NM_031468	exon5	c.G409T	p.D137Y	.	.	88	7	88	1	.	91
CAP2	10486	bcgsc.ca	37	6	17514106	17514106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CAP2	NM_006366	exon7	c.A557G	p.K186R	.	.	154	5	172	0	.	91
CASC5	57082	bcgsc.ca	37	15	40916229	40916229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CASC5	NM_170589	exon11	c.T3845C	p.V1282A	.	.	126	7	104	0	.	660
CASP10	843	bcgsc.ca	37	2	202057791	202057791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CASP10	NM_032976	exon4	c.A526G	p.T176A	.	.	211	6	273	1	.	1086
CAST	831	bcgsc.ca	37	5	96071888	96071888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CAST	NM_001042440	exon8	c.A520G	p.K174E	.	.	61	4	67	0	.	517
CATSPERD	257062	bcgsc.ca	37	19	5776253	5776253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_152784	exon21	c.A2023G	p.T675A	.	.	220	6	188	2	.	.
CCDC15	80071	bcgsc.ca	37	11	124857432	124857432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCDC15	NM_025004	exon8	c.A1310G	p.D437G	.	.	142	5	173	1	.	69
CCDC15	80071	bcgsc.ca	37	11	124862474	124862474	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCDC15	NM_025004	exon10	c.2032-2A>G	.	.	.	58	4	65	0	.	69
CCDC171	203238	bcgsc.ca	37	9	15695270	15695270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_173550	exon11	c.A1253G	p.E418G	.	.	154	6	177	0	.	.
CCDC25	55246	bcgsc.ca	37	8	27614278	27614278	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCDC25	NM_018246	exon4	c.G126A	p.V42V	.	.	143	5	168	0	.	90
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91770248	91770248	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCDC88C	NM_001080414	exon20	c.G3432A	p.T1144T	.	.	130	51	100	0	.	25
CCNA2	890	bcgsc.ca	37	4	122743743	122743743	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCNA2	NM_001237	exon2	c.A272T	p.K91I	.	.	151	14	249	1	.	848
CCNT2	905	bcgsc.ca	37	2	135710894	135710894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCNT2	NM_058241	exon9	c.A869G	p.D290G	.	.	250	7	245	0	.	417
CCPG1	9236	broad.mit.edu	37	15	55657429	55657429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CCPG1	NM_020739	exon7	c.T785C	p.L262P	.	.	868	11	697	0	.	91
CD300E	342510	bcgsc.ca	37	17	72608862	72608862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CD300E	NM_181449	exon4	c.C548A	p.P183H	.	.	81	4	41	0	.	156
CDCA8	55143	bcgsc.ca	37	1	38169021	38169021	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CDCA8	NM_018101	exon8	c.584+2T>C	.	.	.	126	6	103	0	.	90
CECR5	27440	bcgsc.ca	37	22	17625975	17625975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CECR5	NM_033070	exon4	c.A476G	p.E159G	.	.	99	6	94	0	.	514
CENPN	55839	bcgsc.ca	37	16	81053883	81053883	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CENPN	NM_001270473	exon5	c.471+2T>C	.	.	.	49	4	56	0	.	90
CEP104	9731	bcgsc.ca	37	1	3739769	3739769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CEP104	NM_014704	exon20	c.T2540C	p.L847P	.	.	66	4	122	0	.	92
CEP135	9662	bcgsc.ca	37	4	56832001	56832001	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CEP135	NM_025009	exon8	c.T1020C	p.A340A	.	.	108	6	177	1	.	94
CEP152	22995	bcgsc.ca	37	15	49048661	49048661	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CEP152	NM_014985	exon20	c.A2784G	p.E928E	.	.	214	6	180	0	.	70
CEP170B	283638	bcgsc.ca	37	14	105349531	105349531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001112726	exon8	c.A737G	p.E246G	.	.	59	4	70	1	.	.
CEP290	80184	bcgsc.ca	37	12	88448182	88448182	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CEP290	NM_025114	exon51	c.T6969C	p.I2323I	.	.	78	4	88	0	.	96
CHD6	84181	bcgsc.ca	37	20	40034104	40034104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CHD6	NM_032221	exon37	c.A7277G	p.N2426S	.	.	81	4	75	0	.	238
CHD9	80205	bcgsc.ca	37	16	53190969	53190969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CHD9	NM_025134	exon2	c.A968G	p.Q323R	.	.	85	4	118	0	.	272
CHD9	80205	bcgsc.ca	37	16	53288477	53288477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CHD9	NM_025134	exon18	c.T3989C	p.V1330A	.	.	170	6	169	1	.	272
CHD9	80205	bcgsc.ca	37	16	53301289	53301289	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CHD9	NM_025134	exon21	c.T4404C	p.S1468S	.	.	167	5	174	0	.	272
CHST12	55501	bcgsc.ca	37	7	2473484	2473484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CHST12	NM_018641	exon2	c.G1210T	p.G404C	.	.	128	5	98	1	.	226
CLCA4	22802	broad.mit.edu	37	1	87040248	87040248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CLCA4	NM_012128	exon10	c.A1493G	p.N498S	.	.	234	5	241	0	.	92
CLIC1	1192	bcgsc.ca	37	6	31698634	31698634	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CLIC1	NM_001288	exon6	c.A711G	p.A237A	.	.	150	5	151	0	.	515
CNGA3	1261	bcgsc.ca	37	2	98999855	98999855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CNGA3	NM_001298	exon5	c.T400C	p.W134R	.	.	59	4	47	0	.	96
CNIH2	254263	bcgsc.ca	37	11	66050524	66050524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CNIH2	NM_182553	exon4	c.T217C	p.S73P	.	.	220	7	179	1	.	90
CNTN5	53942	bcgsc.ca	37	11	99690494	99690494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CNTN5	NM_001243270	exon3	c.A275G	p.D92G	.	.	69	4	80	0	.	366
COBLL1	22837	bcgsc.ca	37	2	165550916	165550916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COBLL1	NM_014900	exon12	c.T3100C	p.S1034P	.	.	221	7	217	1	.	93
COL12A1	1303	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75866190	75866190	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL12A1	NM_004370	exon15	c.A3033G	p.T1011T	.	.	834	345	854	3	.	142
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32162651	32162651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL16A1	NM_001856	exon8	c.G777C	p.Q259H	.	.	305	136	273	0	.	98
COL23A1	91522	bcgsc.ca	37	5	177681981	177681981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL23A1	NM_173465	exon16	c.A929G	p.D310G	.	.	132	5	137	1	.	91
COL28A1	340267	bcgsc.ca	37	7	7477085	7477085	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL28A1	NM_001037763	exon22	c.G1731T	p.P577P	.	.	71	4	81	0	.	93
COL5A2	1290	bcgsc.ca	37	2	189916109	189916109	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL5A2	NM_000393	exon42	c.A2868G	p.R956R	.	.	180	6	175	1	.	92
COL6A1	1291	bcgsc.ca	37	21	47421211	47421211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL6A1	NM_001848	exon30	c.T1867C	p.S623P	.	.	63	5	60	0	.	91
COL7A1	1294	bcgsc.ca	37	3	48611145	48611145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COL7A1	NM_000094	exon81	c.A6551G	p.D2184G	.	.	155	5	195	1	.	160
COTL1	23406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84623756	84623756	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COTL1	NM_021149	exon3	c.C273T	p.R91R	.	.	139	67	120	0	.	226
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	6478	6478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	ENST00000361624	exon1	c.C575T	p.A192V	.	.	179	168	332	0	.	.
COX19	90639	bcgsc.ca	37	7	1012889	1012889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	COX19	NM_001031617	exon2	c.T122C	p.L41P	.	.	159	5	197	0	.	90
CPNE6	9362	bcgsc.ca	37	14	24543763	24543763	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CPNE6	NM_006032	exon6	c.T522C	p.P174P	.	.	151	5	68	0	.	93
CRB1	23418	bcgsc.ca	37	1	197298119	197298119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CRB1	NM_001257966	exon2	c.C638T	p.P213L	.	.	80	4	56	0	.	161
CRB3	92359	bcgsc.ca	37	19	6465589	6465589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CRB3	NM_174881	exon3	c.T116C	p.V39A	.	.	206	6	226	1	.	90
CSMD1	64478	bcgsc.ca	37	8	2800128	2800128	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CSMD1	NM_033225	exon70	c.10403-2A>G	.	.	.	63	4	75	2	.	86
CSPG5	10675	hgsc.bcm.edu	37	3	47618408	47618409	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CSPG5	NM_001206944	exon2	c.1108_1109insC	p.C370fs	.	.	159	10	130	0	.	91
CSRP2BP	57325	bcgsc.ca	37	20	18142578	18142578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CSRP2BP	NM_020536	exon5	c.A797G	p.Q266R	.	.	94	4	104	0	.	525
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80085161	80085161	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CTNNA2	NM_001164883	exon4	c.C321T	p.S107S	.	.	128	52	136	0	.	368
CTNND2	1501	bcgsc.ca	37	5	11236862	11236862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CTNND2	NM_001332	exon10	c.T1702C	p.S568P	.	.	199	6	133	1	.	293
CTPS2	56474	bcgsc.ca	37	X	16696564	16696564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CTPS2	NM_001144002	exon10	c.T1015C	p.S339P	.	.	207	6	192	0	.	228
CXADR	1525	bcgsc.ca	37	21	18919464	18919464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CXADR	NM_001207065	exon2	c.A163G	p.I55V	.	.	82	4	55	0	.	227
CXCR6	10663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45988614	45988614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CXCR6	NM_006564	exon2	c.T641C	p.I214T	.	.	216	88	219	1	.	658
CYB561	1534	bcgsc.ca	37	17	61514819	61514819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CYB561	NM_001915	exon2	c.G90T	p.M30I	.	.	112	5	59	0	.	91
CYP2C8	1558	broad.mit.edu	37	10	96805692	96805692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CYP2C8	NM_000770	exon6	c.A836G	p.K279R	.	.	357	6	426	1	.	90
CYP3A7	1551	bcgsc.ca	37	7	99332673	99332673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	CYP3A7	NM_000765	exon1	c.T44C	p.L15P	.	.	252	7	148	1	.	91
DAGLA	747	bcgsc.ca	37	11	61507970	61507970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DAGLA	NM_006133	exon18	c.T1889C	p.I630T	.	.	112	5	79	0	.	92
DBF4B	80174	bcgsc.ca	37	17	42828569	42828569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DBF4B	NM_145663	exon14	c.A1796G	p.N599S	.	.	92	5	105	0	.	227
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	36385025	36385025	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DCLK1	NM_004734	exon12	c.C1635A	p.Y545X	.	.	252	110	202	0	.	826
DCLRE1A	9937	bcgsc.ca	37	10	115609777	115609777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DCLRE1A	NM_014881	exon2	c.A1087G	p.N363D	.	.	89	4	182	0	.	228
DDX10	1662	bcgsc.ca	37	11	108550175	108550175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DDX10	NM_004398	exon6	c.A736G	p.K246E	.	.	224	6	193	0	.	1145
DDX54	79039	bcgsc.ca	37	12	113610312	113610312	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DDX54	NM_024072	exon11	c.A1125G	p.T375T	.	.	148	6	163	0	.	227
DENND2D	79961	bcgsc.ca	37	1	111731407	111731407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DENND2D	NM_024901	exon10	c.T1016C	p.V339A	.	.	199	6	196	2	.	227
DENND6A	201627	bcgsc.ca	37	3	57647174	57647174	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_152678	exon6	c.A618G	p.A206A	.	.	128	7	142	1	.	.
DHX15	1665	bcgsc.ca	37	4	24541779	24541779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DHX15	NM_001358	exon10	c.G1738T	p.D580Y	.	.	202	7	432	0	.	91
DIAPH3	81624	bcgsc.ca	37	13	60348957	60348957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DIAPH3	NM_001042517	exon26	c.A3164G	p.E1055G	.	.	72	4	102	1	.	516
DIAPH3	81624	bcgsc.ca	37	13	60554933	60554933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DIAPH3	NM_001042517	exon14	c.A1541G	p.K514R	.	.	141	5	203	2	.	516
DNAH1	25981	broad.mit.edu	37	3	52395276	52395276	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DNAH1	NM_015512	exon29	c.G4782A	p.L1594L	.	.	301	7	328	1	.	67
DNAH2	146754	ucsc.edu	37	17	7679366	7679366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	DNAH2,back,malignant_melanoma,-2	DNAH2	NM_020877	exon30	c.A4846G	p.T1616A	.	.	46	4	70	0	.	102
DNAH5	1767	broad.mit.edu	37	5	13788869	13788869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DNAH5	NM_001369	exon51	c.A8603G	p.D2868G	.	.	212	6	240	0	.	182
DNHD1	144132	bcgsc.ca	37	11	6569171	6569171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DNHD1	NM_144666	exon22	c.A6806G	p.D2269G	.	.	96	4	114	0	.	24
DNM2	1785	bcgsc.ca	37	19	10893687	10893687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DNM2	NM_001005361	exon6	c.A740G	p.D247G	.	.	71	4	41	0	.	471
DNM2	1785	bcgsc.ca	37	19	10893713	10893713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DNM2	NM_001005361	exon6	c.A766G	p.R256G	.	.	55	5	38	0	.	471
DOCK9	23348	broad.mit.edu	37	13	99459950	99459950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DOCK9	.	.	.	.	.	.	299	7	304	2	.	90
DPF2	5977	bcgsc.ca	37	11	65111257	65111257	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DPF2	NM_006268	exon5	c.T507C	p.D169D	.	.	132	5	138	1	.	91
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116510776	116510776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DPP10	NM_001178034	exon11	c.G989T	p.W330L	.	.	196	73	299	0	.	142
DRAXIN	374946	bcgsc.ca	37	1	11772021	11772021	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_198545	exon4	c.A756G	p.K252K	.	.	76	4	69	0	.	.
DRD5	1816	bcgsc.ca	37	4	9783905	9783905	+	Silent	SNP	C	C	T	rs2227848	byfrequency	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DRD5	NM_000798	exon1	c.C252T	p.A84A	.	.	119	25	164	16	C|0.963;T|0.037	91
DRD5	1816	ucsc.edu;bcgsc.ca	37	4	9783917	9783917	+	Silent	SNP	T	T	C	rs76288744		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DRD5	NM_000798	exon1	c.T264C	p.L88L	.	.	113	25	166	16	.	91
DRD5	1816	ucsc.edu;bcgsc.ca	37	4	9783971	9783971	+	Silent	SNP	C	C	T	rs113695344		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DRD5	NM_000798	exon1	c.C318T	p.Y106Y	.	.	103	17	142	7	C|0.500;T|0.500	91
DSC3	1825	bcgsc.ca	37	18	28587048	28587048	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DSC3	NM_024423	exon12	c.T1713C	p.N571N	.	.	187	7	230	0	.	94
DSE	29940	bcgsc.ca	37	6	116758059	116758059	+	Silent	SNP	C	C	A	rs199731077	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DSE	NM_001080976	exon6	c.C2428A	p.R810R	.	.	141	5	131	0	C|0.999;G|0.001	91
DSN1	79980	bcgsc.ca	37	20	35396395	35396395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DSN1	NM_001145315	exon4	c.T406C	p.C136R	.	.	73	4	98	0	.	92
DSPP	1834	bcgsc.ca	37	4	88533332	88533332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DSPP	NM_014208	exon3	c.T127C	p.S43P	.	.	161	5	332	0	.	90
DTHD1	401124	bcgsc.ca	37	4	36292178	36292178	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DTHD1	NM_001170700	exon2	c.A696G	p.R232R	.	.	103	6	191	0	.	46
DZIP3	9666	bcgsc.ca	37	3	108388537	108388537	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	DZIP3	NM_014648	exon22	c.T2433C	p.R811R	.	.	207	6	236	0	.	91
EARS2	124454	bcgsc.ca	37	16	23540823	23540823	+	Missense_Mutation	SNP	C	C	T	rs201181229	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EARS2	NM_001083614	exon7	c.G1352A	p.G451E	.	.	72	4	62	0	.	90
ECH1	1891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39322054	39322054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ECH1	NM_001398	exon2	c.A155G	p.D52G	.	.	60	27	62	1	.	91
EDNRB	1910	bcgsc.ca	37	13	78475301	78475301	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EDNRB	NM_001201397	exon5	c.T1113C	p.Y371Y	.	.	122	5	203	0	.	522
EEF1G	1937	bcgsc.ca	37	11	62334984	62334984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001404	exon6	c.T539C	p.F180S	.	.	64	4	64	1	.	.
EFTUD2	9343	bcgsc.ca	37	17	42931642	42931642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EFTUD2	NM_004247	exon23	c.A2342G	p.D781G	.	.	84	4	89	1	.	91
EHF	26298	bcgsc.ca	37	11	34668122	34668122	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EHF	NM_001206616	exon3	c.C300T	p.F100F	.	.	97	5	86	0	.	226
EIF2S3	1968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24084190	24084190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EIF2S3	NM_001415	exon8	c.T848C	p.I283T	.	.	387	346	480	0	.	130
EIF4G3	8672	broad.mit.edu	37	1	21175987	21175987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EIF4G3	NM_001198801	exon27	c.A3749G	p.K1250R	.	.	637	11	762	0	.	91
EMC9	51016	bcgsc.ca	37	14	24610108	24610108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_016049	exon3	c.A265G	p.N89D	.	.	122	6	111	1	.	.
ENOX1	55068	bcgsc.ca	37	13	43930278	43930278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ENOX1	NM_017993	exon8	c.G600A	p.M200I	.	.	79	4	127	0	.	92
EOGT	285203	bcgsc.ca	37	3	69047256	69047256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_173654	exon10	c.T737C	p.M246T	.	.	68	4	72	0	.	.
EP400	57634	bcgsc.ca	37	12	132466936	132466936	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EP400	NM_015409	exon5	c.T1842C	p.P614P	.	.	173	18	142	7	.	520
EP400	57634	bcgsc.ca	37	12	132528795	132528795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EP400	NM_015409	exon35	c.T6524C	p.L2175P	.	.	107	7	125	0	.	520
EPB41L1	2036	bcgsc.ca	37	20	34761705	34761705	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EPB41L1	NM_001258329	exon3	c.A6G	p.T2T	.	.	111	5	85	0	.	93
EPN2	22905	bcgsc.ca	37	17	19235208	19235208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EPN2	NM_014964	exon10	c.C1454T	p.T485I	.	.	77	4	154	0	.	91
EPS15L1	58513	bcgsc.ca	37	19	16488012	16488012	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EPS15L1	NM_021235	exon22	c.T2301C	p.D767D	.	.	71	4	59	0	.	95
EREG	2069	bcgsc.ca	37	4	75245208	75245208	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EREG	NM_001432	exon2	c.A111G	p.P37P	.	.	313	8	505	2	.	586
ESPL1	9700	bcgsc.ca	37	12	53671310	53671310	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ESPL1	NM_012291	exon10	c.C2142T	p.V714V	.	.	94	4	99	0	.	228
EVC2	132884	bcgsc.ca	37	4	5564654	5564654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EVC2	NM_147127	exon22	c.T3848C	p.I1283T	.	.	202	7	361	0	.	155
EVPL	2125	broad.mit.edu;bcgsc.ca	37	17	74003349	74003349	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EVPL	NM_001988	exon22	c.G5937A	p.E1979E	.	.	210	11	142	0	.	93
EXO1	9156	bcgsc.ca	37	1	242042634	242042634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EXO1	NM_130398	exon13	c.T2098C	p.S700P	.	.	54	4	63	0	.	661
EXOC2	55770	bcgsc.ca	37	6	564902	564902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EXOC2	NM_018303	exon14	c.A1471G	p.R491G	.	.	336	8	465	0	.	662
EXOSC10	5394	ucsc.edu;bcgsc.ca	37	1	11158092	11158092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	EXOSC10	NM_002685	exon2	c.A233G	p.D78G	.	.	48	4	49	0	.	116
FADS6	283985	bcgsc.ca	37	17	72878828	72878828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FADS6	NM_178128	exon3	c.T370C	p.F124L	.	.	79	4	68	0	.	22
FAM182B	728882	broad.mit.edu	37	20	25755527	25755527	+	RNA	SNP	G	G	A	rs199613392	byfrequency	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	119	10	50	1	G|0.975;A|0.025	.
FAM195A	84331	bcgsc.ca	37	16	698144	698144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FAM195A	NM_138418	exon5	c.A437G	p.E146G	.	.	85	5	88	1	.	90
FAT2	2196	bcgsc.ca	37	5	150945393	150945393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FAT2	NM_001447	exon1	c.T3100C	p.S1034P	.	.	193	9	132	0	.	96
FAT3	120114	bcgsc.ca	37	11	92257824	92257824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FAT3	NM_001008781	exon2	c.T3317C	p.L1106P	.	.	91	4	100	0	.	73
FAT3	120114	bcgsc.ca	37	11	92257833	92257833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FAT3	NM_001008781	exon2	c.A3326G	p.E1109G	.	.	100	5	103	1	.	73
FBXO28	23219	bcgsc.ca	37	1	224318254	224318254	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FBXO28	NM_001136115	exon2	c.T348C	p.C116C	.	.	168	7	136	0	.	661
FBXW2	26190	broad.mit.edu	37	9	123533683	123533683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FBXW2	NM_012164	exon7	c.T1019C	p.V340A	.	.	125	5	117	0	.	227
FCGBP	8857	bcgsc.ca	37	19	40419758	40419758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FCGBP	NM_003890	exon6	c.A3236G	p.H1079R	.	.	72	4	108	0	.	98
FCHSD2	9873	broad.mit.edu	37	11	72712033	72712033	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FCHSD2	NM_014824	exon6	c.387+2T>C	.	.	.	166	6	198	0	.	228
FGD2	221472	bcgsc.ca	37	6	36993687	36993687	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FGD2	NM_173558	exon14	c.G1578A	p.K526K	.	.	58	4	59	0	.	229
FGFR2	2263	bcgsc.ca	37	10	123239130	123239130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FGFR2	NM_001144915	exon17	c.T2089C	p.S697P	.	.	66	4	85	0	.	2607
FHOD1	29109	bcgsc.ca	37	16	67263597	67263597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FHOD1	NM_013241	exon22	c.T3437C	p.L1146P	.	.	143	5	136	0	.	221
FKBP8	23770	bcgsc.ca	37	19	18652774	18652774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FKBP8	NM_012181	exon2	c.T7C	p.S3P	.	.	55	4	33	0	.	227
FLNA	2316	bcgsc.ca	37	X	153578169	153578169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FLNA	NM_001110556	exon46	c.A7400G	p.D2467G	.	.	52	4	58	0	.	599
FLNC	2318	bcgsc.ca	37	7	128478392	128478392	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FLNC	NM_001127487	exon7	c.A1119G	p.G373G	.	.	142	7	122	1	.	141
FLT4	2324	bcgsc.ca	37	5	180046358	180046358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FLT4	NM_182925	exon19	c.A2656G	p.T886A	.	.	83	5	64	0	.	1490
FOLH1	2346	bcgsc.ca	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FOLH1	NM_004476	exon7	c.G842A	p.R281H	.	.	340	26	347	2	C|0.974;T|0.026	579
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	byfrequency	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	.	.	304	27	311	2	A|0.994;G|0.006	579
FOXA1	3169	bcgsc.ca	37	14	38064132	38064132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FOXA1	NM_004496	exon1	c.A46G	p.N16D	.	.	159	6	76	0	.	226
FRAS1	80144	bcgsc.ca	37	4	79350262	79350262	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FRAS1	NM_001166133	exon36	c.A4725G	p.E1575E	.	.	67	4	99	0	.	68
FRMD7	90167	ucsc.edu	37	X	131228127	131228127	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FRMD7	NM_194277	exon5	c.G325T	p.G109X	.	.	44	4	43	0	.	228
FRYL	285527	bcgsc.ca	37	4	48592752	48592752	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	FRYL	NM_015030	exon17	c.T1431C	p.L477L	.	.	146	5	238	0	.	69
G6PC	2538	bcgsc.ca	37	17	41059621	41059621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	G6PC	NM_000151	exon3	c.A422G	p.K141R	.	.	143	5	92	1	.	292
G6PC	2538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41063222	41063222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	G6PC	NM_000151	exon5	c.A853G	p.K285E	.	.	177	74	155	0	.	292
GALNT18	374378	bcgsc.ca	37	11	11292835	11292835	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_198516	exon11	c.A1680G	p.G560G	.	.	67	4	75	0	.	.
GDF5	8200	broad.mit.edu;mdanderson.org	37	20	34022500	34022500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GDF5	NM_000557	exon2	c.A713T	p.E238V	.	.	19	7	9	0	.	226
GEMIN4	50628	bcgsc.ca	37	17	649036	649036	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GEMIN4	NM_015721	exon2	c.G2247T	p.P749P	.	.	71	4	126	0	.	206
GEMIN4	50628	bcgsc.ca	37	17	649044	649044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GEMIN4	NM_015721	exon2	c.T2239C	p.F747L	.	.	67	4	131	1	.	206
GH1	2688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61994712	61994712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GH1	NM_000515	exon5	c.G611A	p.R204H	.	.	611	163	413	1	.	522
GJB7	375519	broad.mit.edu	37	6	87994328	87994328	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GJB7	NM_198568	exon3	c.A303G	p.R101R	.	.	485	9	492	0	.	90
GLP2R	9340	bcgsc.ca	37	17	9792814	9792814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GLP2R	NM_004246	exon13	c.A1454G	p.D485G	.	.	70	4	86	0	.	524
GNPAT	8443	bcgsc.ca	37	1	231401763	231401763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GNPAT	NM_014236	exon7	c.T776C	p.L259P	.	.	104	5	115	0	.	156
GOLGA6L6	727832	bcgsc.ca	37	15	20740231	20740231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001145004	exon8	c.A1519G	p.K507E	.	.	679	28	913	2	.	.
GPBP1L1	60313	bcgsc.ca	37	1	46108151	46108151	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPBP1L1	NM_021639	exon7	c.T498C	p.A166A	.	.	89	5	89	0	.	91
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67646366	67646366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPHN	NM_020806	exon22	c.A2151T	p.E717D	.	.	300	139	329	0	.	228
GPR64	10149	bcgsc.ca	37	X	19032085	19032085	+	Missense_Mutation	SNP	A	A	G	rs141955849		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPR64	NM_001184834	exon16	c.T818C	p.V273A	.	.	70	6	53	0	A|1.000;G|0.000	130
GPR84	53831	bcgsc.ca	37	12	54757347	54757347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPR84	NM_020370	exon2	c.G289A	p.G97R	.	.	77	4	72	0	.	523
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139234260	139234260	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GPSM1	NM_015597	exon8	c.G1071A	p.Q357Q	.	.	105	30	86	0	.	90
GRID2	2895	bcgsc.ca	37	4	94377093	94377093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GRID2	NM_001510	exon11	c.T1826C	p.M609T	.	.	155	5	366	1	.	159
GRIN1	2902	hgsc.bcm.edu	37	9	140057425	140057425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GRIN1	NM_001185091	exon16	c.C2204G	p.A735G	.	.	46	9	37	0	.	187
GRIP1	23426	bcgsc.ca	37	12	66788012	66788012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GRIP1	NM_001178074	exon16	c.T1949C	p.L650P	.	.	168	5	140	0	.	494
GRK4	2868	bcgsc.ca	37	4	3040106	3040106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GRK4	NM_182982	exon15	c.A1549G	p.I517V	.	.	85	5	140	0	.	507
GTF3C1	2975	broad.mit.edu	37	16	27556771	27556771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GTF3C1	NM_001520	exon2	c.C295T	p.P99S	.	.	190	6	242	0	.	94
GUF1	60558	bcgsc.ca	37	4	44690145	44690145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GUF1	NM_021927	exon9	c.A1060G	p.K354E	.	.	79	4	150	1	.	91
GYPB	2994	broad.mit.edu	37	4	144922359	144922359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	GYPB	NM_002100	exon2	c.T115C	p.Y39H	.	.	1659	12	1172	2	.	515
HAPLN1	1404	bcgsc.ca	37	5	82969274	82969274	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HAPLN1	NM_001884	exon2	c.T69C	p.T23T	.	.	195	6	228	1	.	580
HCRTR1	3061	bcgsc.ca	37	1	32086450	32086450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HCRTR1	NM_001525	exon5	c.T385C	p.S129P	.	.	79	5	79	1	.	523
HERC1	8925	bcgsc.ca	37	15	63946477	63946477	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HERC1	NM_003922	exon51	c.C10131T	p.S3377S	.	.	163	6	74	0	.	666
HIRA	7290	bcgsc.ca	37	22	19373204	19373204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HIRA	NM_003325	exon12	c.A1169G	p.Q390R	.	.	220	9	163	0	.	91
HPS5	11234	bcgsc.ca	37	11	18320432	18320432	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HPS5	NM_181507	exon10	c.G1071T	p.V357V	.	.	201	6	157	0	.	133
HRH2	3274	bcgsc.ca	37	5	175111014	175111014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HRH2	NM_001131055	exon2	c.A778G	p.R260G	.	.	155	8	134	1	.	91
HRNR	388697	broad.mit.edu	37	1	152188308	152188308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HRNR	NM_001009931	exon3	c.T5797C	p.S1933P	.	.	1531	14	921	5	.	93
HRSP12	10247	bcgsc.ca	37	8	99116726	99116726	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HRSP12	NM_005836	exon5	c.T342C	p.A114A	.	.	80	4	91	0	.	91
HS6ST3	266722	bcgsc.ca	37	13	97485205	97485205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HS6ST3	NM_153456	exon2	c.A1169G	p.N390S	.	.	72	4	88	0	.	92
HSPA12A	259217	ucsc.edu;bcgsc.ca	37	10	118451933	118451933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HSPA12A	NM_025015	exon6	c.A592G	p.R198G	.	.	48	4	68	0	.	206
HSPA2	3306	bcgsc.ca	37	14	65008282	65008282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HSPA2	NM_021979	exon1	c.C715A	p.R239S	.	.	46	4	46	0	.	226
HSPB7	27129	bcgsc.ca	37	1	16345766	16345766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HSPB7	.	.	.	.	.	.	185	6	213	0	.	226
HSPB8	26353	bcgsc.ca	37	12	119617300	119617300	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HSPB8	NM_014365	exon1	c.A183G	p.P61P	.	.	86	4	76	0	.	460
HSPG2	3339	bcgsc.ca	37	1	22182307	22182307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HSPG2	NM_005529	exon45	c.A5674G	p.S1892G	.	.	87	5	73	0	.	141
HTR3D	200909	bcgsc.ca	37	3	183756055	183756055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HTR3D	NM_001145143	exon6	c.A763G	p.K255E	.	.	154	5	151	0	.	90
HTT	3064	bcgsc.ca	37	4	3219549	3219549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	HTT	NM_002111	exon52	c.A7112G	p.Q2371R	.	.	82	4	119	1	.	281
IBSP	3381	bcgsc.ca	37	4	88732521	88732521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IBSP	NM_004967	exon7	c.A413G	p.D138G	.	.	154	13	267	6	.	90
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10385686	10385686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ICAM1	NM_000201	exon2	c.A313G	p.T105A	.	.	55	31	77	0	.	91
IGF2R	3482	bcgsc.ca	37	6	160485532	160485532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IGF2R	NM_000876	exon28	c.T3986C	p.I1329T	.	.	143	5	114	0	.	118
IGSF10	285313	bcgsc.ca	37	3	151164648	151164648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IGSF10	NM_178822	exon4	c.T3121C	p.S1041P	.	.	85	4	88	1	.	102
IKZF2	22807	bcgsc.ca	37	2	213914438	213914438	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IKZF2	NM_016260	exon5	c.T573C	p.S191S	.	.	168	5	146	0	.	226
IL3RA	3563	broad.mit.edu	37	X	1467377	1467377	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IL3RA	NM_002183	exon4	c.C237T	p.T79T	.	.	1087	11	1058	1	.	41
IMPG1	3617	bcgsc.ca	37	6	76660797	76660797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IMPG1	NM_001563	exon13	c.C1306T	p.P436S	.	.	162	7	123	0	.	93
INE1	8552	bcgsc.ca	37	X	47064878	47064878	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	INE1	.	.	.	.	.	.	140	6	124	0	.	108
INPP4A	3631	bcgsc.ca	37	2	99172041	99172041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	INPP4A	NM_004027	exon17	c.A1607G	p.K536R	.	.	148	5	110	0	.	227
INPP5D	3635	bcgsc.ca	37	2	234094564	234094564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	INPP5D	.	.	.	.	.	.	155	5	192	1	.	652
INSR	3643	broad.mit.edu;bcgsc.ca	37	19	7143085	7143085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	INSR	NM_000208	exon12	c.A2284G	p.R762G	.	.	55	6	44	0	.	1381
IRAK4	51135	broad.mit.edu	37	12	44161948	44161948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	IRAK4	NM_016123	exon2	c.C34T	p.R12C	.	.	270	7	296	0	.	1366
ISPD	729920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16298092	16298092	+	Missense_Mutation	SNP	A	A	T	rs199890239		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ISPD	NM_001101426	exon8	c.T1042A	p.F348I	.	.	101	37	94	0	A|0.999;T|0.001	23
JAG1	182	bcgsc.ca	37	20	10621826	10621826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	JAG1	NM_000214	exon24	c.G2983A	p.E995K	.	.	71	4	93	0	.	1273
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64952867	64952867	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	JMJD1C	NM_032776	exon16	c.C5907T	p.C1969C	.	.	144	63	165	0	.	275
KARS	3735	bcgsc.ca	37	16	75670409	75670409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KARS	NM_001130089	exon5	c.T509C	p.L170P	.	.	87	4	77	0	.	92
KCNC1	3746	bcgsc.ca	37	11	17794144	17794144	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KCNC1	NM_004976	exon2	c.A1503G	p.A501A	.	.	123	5	116	1	.	91
KCNH6	81033	bcgsc.ca	37	17	61623027	61623027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KCNH6	NM_030779	exon14	c.A2749G	p.R917G	.	.	153	5	101	0	.	91
KCNJ8	3764	bcgsc.ca	37	12	21918826	21918826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KCNJ8	NM_004982	exon3	c.T1106C	p.L369P	.	.	281	7	456	0	.	90
KCNK4	50801	bcgsc.ca	37	11	64067064	64067064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KCNK4	NM_033310	exon7	c.T1048C	p.S350P	.	.	42	4	41	1	.	90
KCTD3	51133	bcgsc.ca	37	1	215793877	215793877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KCTD3	NM_016121	exon18	c.A2365G	p.T789A	.	.	166	5	139	0	.	93
KHDRBS2	202559	bcgsc.ca	37	6	62887145	62887145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KHDRBS2	NM_152688	exon2	c.A164G	p.N55S	.	.	264	7	343	2	.	272
KHSRP	8570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6420136	6420136	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KHSRP	NM_003685	exon6	c.A495G	p.E165E	.	.	136	53	185	1	.	226
KIAA0825	285600	bcgsc.ca	37	5	93800734	93800734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA0825	NM_001145678	exon11	c.T1903C	p.W635R	.	.	69	4	77	0	.	91
KIAA0930	23313	bcgsc.ca	37	22	45593707	45593707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA0930	NM_015264	exon9	c.A1153G	p.T385A	.	.	120	6	163	0	.	90
KIAA0930	23313	bcgsc.ca	37	22	45601573	45601573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA0930	NM_015264	exon4	c.A367G	p.T123A	.	.	72	4	81	0	.	90
KIAA1109	84162	bcgsc.ca	37	4	123122198	123122198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA1109	NM_015312	exon13	c.A1415G	p.N472S	.	.	353	8	237	1	.	80
KIAA1109	84162	bcgsc.ca	37	4	123267844	123267844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA1109	NM_015312	exon73	c.T12800C	p.F4267S	.	.	216	6	192	0	.	80
KIAA1217	56243	bcgsc.ca	37	10	24832890	24832890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA1217	NM_019590	exon19	c.A4691G	p.D1564G	.	.	58	4	83	0	.	98
KIAA1614	57710	bcgsc.ca	37	1	180904885	180904885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIAA1614	NM_020950	exon5	c.A1840G	p.S614G	.	.	103	7	60	0	.	26
KIF1C	10749	ucsc.edu;bcgsc.ca	37	17	4926003	4926003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIF1C	NM_006612	exon22	c.A2627G	p.Q876R	.	.	20	4	19	0	.	92
KIRREL3	84623	bcgsc.ca	37	11	126299075	126299075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIRREL3	NM_032531	exon15	c.T1805C	p.M602T	.	.	244	7	218	0	.	25
KIT	3815	bcgsc.ca	37	4	55565906	55565906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KIT	NM_000222	exon4	c.T730C	p.S244P	.	.	97	4	149	0	.	20166
KLHL1	57626	bcgsc.ca	37	13	70293663	70293663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KLHL1	NM_020866	exon9	c.A1853G	p.E618G	.	.	81	4	131	0	.	90
KNDC1	85442	broad.mit.edu;bcgsc.ca	37	10	135033549	135033549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KNDC1	NM_152643	exon29	c.C4951T	p.H1651Y	.	.	87	6	182	0	.	229
KRBA1	84626	bcgsc.ca	37	7	149420853	149420853	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KRBA1	.	.	.	.	.	.	115	6	109	0	.	91
KRT8	3856	ucsc.edu;bcgsc.ca	37	12	53294400	53294400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	KRT8	NM_001256282	exon5	c.T746C	p.I249T	.	.	41	5	51	0	.	92
LACRT	90070	bcgsc.ca	37	12	55026978	55026978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LACRT	NM_033277	exon2	c.A98G	p.Q33R	.	.	69	4	65	0	.	90
LAMA5	3911	bcgsc.ca	37	20	60921805	60921805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LAMA5	NM_005560	exon8	c.A1124G	p.D375G	.	.	138	7	90	0	.	93
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107688358	107688358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LAMB4	NM_007356	exon28	c.A4321G	p.N1441D	.	.	354	168	374	0	.	140
LCE1E	353135	broad.mit.edu;bcgsc.ca	37	1	152759943	152759944	+	Frame_Shift_Ins	INS	-	-	GTGGA	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LCE1E	NM_178353	exon2	c.168_169insGTGGA	p.S56fs	.	.	293	0	173	0	.	90
LCLAT1	253558	bcgsc.ca	37	2	30863205	30863205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LCLAT1	NM_182551	exon7	c.A965G	p.E322G	.	.	170	9	202	3	.	92
LGALS3BP	3959	bcgsc.ca	37	17	76968065	76968065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LGALS3BP	NM_005567	exon6	c.T1351C	p.S451P	.	.	163	7	107	3	.	515
LGI2	55203	bcgsc.ca	37	4	25005485	25005485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LGI2	NM_018176	exon8	c.T1226C	p.V409A	.	.	78	4	143	0	.	90
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	75602325	75602325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LHX8	NM_001001933	exon3	c.C56T	p.T19I	.	.	73	34	74	0	.	93
LINC00583	100113404	bcgsc.ca	37	9	13945396	13945396	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	211	6	211	2	.	.
LLGL2	3993	bcgsc.ca	37	17	73560492	73560492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LLGL2	NM_001015002	exon10	c.T940C	p.C314R	.	.	70	4	41	0	.	251
LMBR1L	55716	bcgsc.ca	37	12	49497550	49497550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LMBR1L	NM_018113	exon6	c.T482C	p.L161P	.	.	110	6	106	0	.	227
LOC151174	0	bcgsc.ca	37	2	239134016	239134016	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	155	6	125	1	.	.
LOC220729	0	broad.mit.edu;bcgsc.ca	37	3	197351393	197351393	+	RNA	SNP	T	T	G	rs62287047	byfrequency	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	24	5	27	0	T|0.700;G|0.300	.
LOC440173	0	bcgsc.ca	37	9	89627631	89627631	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	95	4	81	0	.	.
LOC440704	0	bcgsc.ca	37	1	190766929	190766929	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	24	14	21	0	.	.
LOC643802	0	bcgsc.ca	37	16	53405152	53405152	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	74	4	98	0	.	.
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20826252	20826252	+	Missense_Mutation	SNP	G	G	T	rs201728796	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LOC81691	NM_030941	exon4	c.G255T	p.W85C	.	.	184	76	211	0	G|0.999;A|0.000	92
LOXHD1	125336	bcgsc.ca	37	18	44140357	44140357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_144612	exon19	c.A2750G	p.K917R	.	.	93	5	63	0	.	.
LRBA	987	bcgsc.ca	37	4	151247046	151247046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LRBA	NM_006726	exon50	c.T7400C	p.V2467A	.	.	128	5	94	0	.	157
LRP2	4036	bcgsc.ca	37	2	170070372	170070372	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LRP2	NM_004525	exon36	c.A5835G	p.R1945R	.	.	215	7	239	0	.	175
LRRC16B	90668	bcgsc.ca	37	14	24534956	24534956	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LRRC16B	NM_138360	exon34	c.A3522G	p.R1174R	.	.	198	7	80	0	.	139
LRRIQ3	127255	bcgsc.ca	37	1	74507597	74507597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LRRIQ3	NM_001105659	exon7	c.A1018G	p.I340V	.	.	78	4	122	0	.	92
LY75	4065	bcgsc.ca	37	2	160665022	160665022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LY75	NM_002349	exon33	c.T4760C	p.L1587P	.	.	243	7	263	0	.	90
LYPD4	147719	bcgsc.ca	37	19	42343333	42343333	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LYPD4	NM_173506	exon2	c.G27A	p.V9V	.	.	90	4	170	1	.	91
LZTR1	8216	bcgsc.ca	37	22	21343940	21343940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	LZTR1	NM_006767	exon7	c.T620C	p.L207P	.	.	53	4	57	0	.	280
MAATS1	89876	bcgsc.ca	37	3	119469934	119469934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_033364	exon17	c.A2294G	p.N765S	.	.	300	8	276	0	.	.
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	36049710	36049710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAB21L1	NM_005584	exon1	c.T566C	p.L189P	.	.	55	23	96	0	.	92
MAGEB2	4113	bcgsc.ca	37	X	30237203	30237203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAGEB2	NM_002364	exon2	c.A506G	p.N169S	.	.	80	4	75	0	.	131
MAGEC1	9947	bcgsc.ca	37	X	140994010	140994010	+	Missense_Mutation	SNP	C	C	T	rs146798989	byfrequency	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAGEC1	NM_005462	exon4	c.C820T	p.P274S	.	.	361	21	394	1	C|0.945;T|0.055	133
MAGED1	9500	bcgsc.ca	37	X	51640705	51640705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAGED1	NM_001005333	exon7	c.T1717C	p.C573R	.	.	141	5	131	0	.	133
MAGEE2	139599	bcgsc.ca	37	X	75004247	75004247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAGEE2	NM_138703	exon1	c.A640G	p.R214G	.	.	69	4	75	0	.	132
MAN1B1	11253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140001761	140001761	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAN1B1	NM_016219	exon11	c.C1626T	p.P542P	.	.	263	89	162	0	.	91
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19410152	19410152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAP3K15	NM_001001671	exon18	c.C2399T	p.A800V	.	.	49	44	36	0	.	335
MATN1	4146	bcgsc.ca	37	1	31194561	31194561	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MATN1	NM_002379	exon2	c.T132C	p.F44F	.	.	32	4	27	0	.	90
MAZ	4150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29820038	29820038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MAZ	NM_002383	exon4	c.C1255T	p.H419Y	.	.	85	36	104	0	.	136
MCC	4163	bcgsc.ca	37	5	112389642	112389642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MCC	NM_001085377	exon15	c.C2228T	p.T743I	.	.	122	5	114	0	.	69
MCF2	4168	bcgsc.ca	37	X	138689861	138689861	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MCF2	NM_001171876	exon16	c.T1707C	p.D569D	.	.	197	6	267	0	.	227
MCM10	55388	bcgsc.ca	37	10	13237251	13237251	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MCM10	NM_182751	exon14	c.T1959C	p.A653A	.	.	60	4	65	0	.	653
MCM3AP	8888	bcgsc.ca	37	21	47697625	47697625	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MCM3AP	NM_003906	exon5	c.A1674G	p.P558P	.	.	75	4	62	0	.	291
MED24	9862	hgsc.bcm.edu	37	17	38185119	38185120	+	Frame_Shift_Ins	INS	-	-	GGGG	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MED24	NM_014815	exon14	c.1369_1370insCCCC	p.A457fs	.	.	70	0	102	0	.	187
METTL9	51108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21636425	21636425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	METTL9	NM_016025	exon4	c.A740G	p.Y247C	.	.	139	46	169	0	.	91
MGAT4B	11282	bcgsc.ca	37	5	179227489	179227489	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MGAT4B	NM_054013	exon5	c.A759G	p.R253R	.	.	154	9	150	0	.	90
MGEA5	10724	bcgsc.ca	37	10	103547215	103547215	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MGEA5	NM_012215	exon15	c.T2520C	p.P840P	.	.	178	6	199	1	.	93
MGME1	92667	bcgsc.ca	37	20	17956503	17956503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_052865	exon3	c.A688G	p.T230A	.	.	221	8	280	1	.	.
MIA2	117153	bcgsc.ca	37	14	39722167	39722167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MIA2	NM_054024	exon5	c.A1783G	p.K595E	.	.	126	5	169	0	.	154
MIR548AA1	100500863	bcgsc.ca	37	1	100163931	100163931	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	31	4	33	0	.	.
MIR5694	100847064	bcgsc.ca	37	10	122357890	122357890	+	RNA	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	47	4	82	0	.	.
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151873592	151873592	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MLL3	NM_170606	exon38	c.T8946G	p.V2982V	.	.	187	76	191	0	.	1398
MLLT10P1	140678	bcgsc.ca	37	20	29637976	29637976	+	RNA	SNP	G	G	C	rs142331172		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	111	9	136	0	.	.
MLLT4	4301	bcgsc.ca	37	6	168271080	168271080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MLLT4	NM_001207008	exon3	c.A316G	p.I106V	.	.	214	6	233	0	.	685
MRPL28	10573	bcgsc.ca	37	16	420008	420008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MRPL28	NM_006428	exon2	c.T211C	p.F71L	.	.	143	5	81	0	.	90
MRPS16	51021	ucsc.edu	37	10	75008873	75008873	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MRPS16	.	.	.	.	.	.	32	1	96	0	.	90
MTBP	27085	bcgsc.ca	37	8	121500501	121500501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MTBP	NM_022045	exon12	c.A1268G	p.Q423R	.	.	185	6	206	1	.	228
MTERFD2	130916	bcgsc.ca	37	2	242035585	242035585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MTERFD2	NM_182501	exon4	c.A974G	p.E325G	.	.	326	9	332	4	.	91
MUC4	4585	bcgsc.ca	37	3	195512712	195512712	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MUC4	NM_018406	exon2	c.A5739G	p.V1913V	.	.	385	27	345	14	.	90
MUC4	4585	broad.mit.edu	37	3	195513533	195513533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MUC4	NM_018406	exon2	c.T4918C	p.S1640P	.	.	803	16	748	5	.	90
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MUC6	NM_005961	exon31	c.T5966C	p.F1989S	.	.	2840	72	3035	60	.	23
MYBPC1	4604	broad.mit.edu;bcgsc.ca	37	12	102067254	102067254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYBPC1	NM_206819	exon25	c.A2663T	p.D888V	.	.	138	6	156	1	.	94
MYCBP2	23077	bcgsc.ca	37	13	77640214	77640214	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYCBP2	NM_015057	exon72	c.A12465G	p.R4155R	.	.	57	4	110	0	.	236
MYLK	4638	bcgsc.ca	37	3	123401135	123401135	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYLK	NM_053025	exon20	c.C3588T	p.T1196T	.	.	146	5	100	1	.	365
MYO16	23026	bcgsc.ca	37	13	109472693	109472693	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYO16	NM_001198950	exon8	c.G876A	p.L292L	.	.	129	5	127	0	.	142
MYO18B	84700	bcgsc.ca	37	22	26247545	26247545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYO18B	NM_032608	exon21	c.A3884G	p.K1295R	.	.	68	4	65	0	.	142
MYO1C	4641	bcgsc.ca	37	17	1377978	1377978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYO1C	NM_001080779	exon17	c.T1723C	p.C575R	.	.	66	4	119	1	.	90
MYO1H	283446	bcgsc.ca	37	12	109865328	109865328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001101421	exon18	c.A1838G	p.E613G	.	.	177	6	155	0	.	.
MYO7A	4647	bcgsc.ca	37	11	76922285	76922285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYO7A	NM_000260	exon45	c.A6140G	p.E2047G	.	.	85	5	63	0	.	138
MYOM2	9172	bcgsc.ca	37	8	2041795	2041795	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	MYOM2	NM_003970	exon17	c.2004-2A>G	.	.	.	125	6	131	0	.	95
N4BP2	55728	bcgsc.ca	37	4	40122321	40122321	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	N4BP2	NM_018177	exon9	c.A2590T	p.N864Y	.	.	73	4	165	0	.	602
NAALADL2	254827	bcgsc.ca	37	3	175473024	175473024	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NAALADL2	NM_207015	exon13	c.T2007C	p.T669T	.	.	285	9	256	0	.	47
NAPSA	9476	broad.mit.edu;bcgsc.ca	37	19	50864210	50864210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NAPSA	NM_004851	exon5	c.T656C	p.F219S	.	.	82	7	115	0	.	90
NDUFA10	4705	bcgsc.ca	37	2	240960652	240960652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NDUFA10	NM_004544	exon3	c.T422C	p.L141P	.	.	108	5	138	0	.	514
NDUFS5	4725	bcgsc.ca	37	1	39500135	39500135	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NDUFS5	NM_001184979	exon3	c.T288C	p.P96P	.	.	195	7	210	0	.	90
NEB	4703	bcgsc.ca	37	2	152409984	152409984	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NEB	NM_001271208	exon127	c.A19659G	p.K6553K	.	.	146	5	145	0	.	145
NEU1	4758	bcgsc.ca	37	6	31829122	31829122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NEU1	NM_000434	exon3	c.T458C	p.L153P	.	.	135	5	166	0	.	91
NEURL4	84461	bcgsc.ca	37	17	7224092	7224092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NEURL4	NM_032442	exon21	c.C3511A	p.Q1171K	.	.	65	5	110	0	.	46
NF1	4763	bcgsc.ca	37	17	29509650	29509650	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NF1	NM_001128147	exon8	c.C855T	p.S285S	.	.	145	5	148	0	.	3353
NFRKB	4798	bcgsc.ca	37	11	129735845	129735845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NFRKB	NM_006165	exon23	c.T3640C	p.S1214P	.	.	128	7	122	0	.	93
NHLRC2	374354	bcgsc.ca	37	10	115661545	115661545	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NHLRC2	NM_198514	exon7	c.A1260G	p.E420E	.	.	155	8	254	1	.	91
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52520942	52520942	+	Missense_Mutation	SNP	C	C	T	rs200644684		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NID2	NM_007361	exon4	c.G865A	p.A289T	.	.	82	33	75	0	C|0.999;T|0.000	158
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156899886	156899886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NIPAL4	NM_001099287	exon6	c.A1319G	p.K440R	.	.	82	34	80	0	.	68
NIPBL	25836	bcgsc.ca	37	5	36958215	36958215	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NIPBL	NM_015384	exon4	c.A240G	p.K80K	.	.	116	5	132	1	.	293
NIPBL	25836	broad.mit.edu;bcgsc.ca	37	5	36976272	36976272	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NIPBL	NM_015384	exon9	c.G1263A	p.S421S	.	.	172	7	187	0	.	293
NLRP9	338321	bcgsc.ca	37	19	56228258	56228258	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NLRP9	NM_176820	exon5	c.A2166G	p.G722G	.	.	70	4	95	0	.	294
NOP14-AS1	317648	ucsc.edu	37	4	2940462	2940462	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	55	2	147	1	.	.
NOP14-AS1	317648	ucsc.edu	37	4	2940485	2940485	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	78	2	208	1	.	.
NPFFR2	10886	bcgsc.ca	37	4	72897676	72897676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NPFFR2	NM_004885	exon1	c.T58C	p.S20P	.	.	116	5	180	0	.	92
NPHP4	261734	bcgsc.ca	37	1	5927127	5927127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NPHP4	NM_015102	exon25	c.G3521A	p.C1174Y	.	.	54	4	105	0	.	515
NPY1R	4886	bcgsc.ca	37	4	164246780	164246780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NPY1R	NM_000909	exon3	c.T830C	p.L277P	.	.	60	5	54	0	.	523
NR3C2	4306	hgsc.bcm.edu	37	4	149075987	149075988	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NR3C2	NM_000901	exon5	c.2080_2081insG	p.P694fs	.	.	146	12	106	0	.	154
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107866734	107866734	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NRCAM	NM_001037132	exon6	c.C639T	p.R213R	.	.	47	21	62	0	.	156
NRXN3	9369	bcgsc.ca	37	14	79434561	79434561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NRXN3	NM_004796	exon11	c.T1895C	p.L632P	.	.	186	9	184	3	.	587
NUP188	23511	bcgsc.ca	37	9	131756713	131756713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NUP188	NM_015354	exon28	c.A3079G	p.T1027A	.	.	126	5	114	1	.	207
NUP214	8021	broad.mit.edu	37	9	134107685	134107685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NUP214	NM_005085	exon35	c.T6229C	p.S2077P	.	.	410	6	401	1	.	1131
NUP37	79023	bcgsc.ca	37	12	102468160	102468160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NUP37	NM_024057	exon9	c.A953G	p.K318R	.	.	95	5	78	0	.	205
NXT2	55916	bcgsc.ca	37	X	108780164	108780164	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	NXT2	NM_018698	exon2	c.96-2A>G	.	.	.	67	4	46	0	.	109
OPHN1	4983	bcgsc.ca	37	X	67430126	67430126	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	OPHN1	NM_002547	exon10	c.703-2A>G	.	.	.	124	5	132	0	.	110
OR10A4	283297	bcgsc.ca	37	11	6898712	6898712	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	OR10A4	NM_207186	exon1	c.T834C	p.S278S	.	.	140	5	104	0	.	69
OR1J2	26740	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125273978	125273978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	OR1J2	NM_054107	exon1	c.G898A	p.A300T	.	.	152	59	169	2	.	72
OR4M1	441670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20249191	20249191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	OR4M1	NM_001005500	exon1	c.G710A	p.R237K	.	.	693	279	701	0	.	68
OR56A5	390084	bcgsc.ca	37	11	5989240	5989240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001146033	exon1	c.T485C	p.I162T	.	.	139	6	132	0	.	.
PAFAH1B2	5049	bcgsc.ca	37	11	117030680	117030680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PAFAH1B2	NM_001184747	exon3	c.A112G	p.K38E	.	.	275	8	244	1	.	204
PAH	5053	broad.mit.edu;bcgsc.ca	37	12	103306632	103306632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PAH	NM_000277	exon2	c.A105G	p.I35M	.	.	507	16	493	0	.	72
PANK1	53354	bcgsc.ca	37	10	91371779	91371779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PANK1	NM_148977	exon2	c.G730T	p.G244C	.	.	63	4	87	0	.	90
PC	5091	bcgsc.ca	37	11	66617545	66617545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PC	NM_000920	exon19	c.A2761G	p.M921V	.	.	86	4	72	0	.	228
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4925278	4925278	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_032972	exon1	c.C414T	p.C138C	.	.	684	496	736	1	.	.
PCDHGB4	8641	bcgsc.ca	37	5	140768084	140768084	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_032098	exon1	c.T633C	p.T211T	.	.	130	5	131	0	.	.
PCDHGC5	56097	hgsc.bcm.edu	37	5	140869331	140869332	+	Frame_Shift_Ins	INS	-	-	C	rs145669059	bycluster;by1000genomes;alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PCDHGC5	NM_018929	exon1	c.524_525insC	p.N175fs	.	.	121	10	86	0	.	25
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82464992	82464992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PCLO	NM_014510	exon16	c.A14240G	p.Q4747R	.	.	180	84	162	0	.	29
PDGFA	5154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	550578	550578	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDGFA	NM_002607	exon4	c.G321A	p.R107R	.	.	137	63	93	0	.	454
PDGFC	56034	bcgsc.ca	37	4	157689122	157689122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDGFC	NM_016205	exon5	c.A724G	p.T242A	.	.	149	5	143	0	.	525
PDHA2	5161	bcgsc.ca	37	4	96761585	96761585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDHA2	NM_005390	exon1	c.A284G	p.Q95R	.	.	220	7	295	0	.	90
PDIA6	10130	bcgsc.ca	37	2	10931995	10931995	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDIA6	NM_005742	exon6	c.T510C	p.F170F	.	.	257	8	286	0	.	90
PDILT	204474	bcgsc.ca	37	16	20410439	20410439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDILT	NM_174924	exon2	c.T184C	p.F62L	.	.	105	5	92	0	.	153
PDK3	5165	broad.mit.edu	37	X	24549854	24549854	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PDK3	NM_005391	exon10	c.A1044G	p.E348E	.	.	263	8	279	1	.	377
PELI2	57161	ucsc.edu;bcgsc.ca	37	14	56746414	56746414	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PELI2	NM_021255	exon3	c.A228G	p.Q76Q	.	.	47	4	53	0	.	91
PES1	23481	bcgsc.ca	37	22	30975817	30975817	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PES1	NM_014303	exon12	c.C1275A	p.P425P	.	.	133	5	154	0	.	90
PGM2	55276	bcgsc.ca	37	4	37848587	37848587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PGM2	NM_018290	exon9	c.G1043A	p.G348E	.	.	20	4	57	0	.	91
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608299	608299	+	Missense_Mutation	SNP	C	C	T	rs200183606		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PHRF1	NM_020901	exon14	c.C2840T	p.S947F	.	.	34	14	21	0	C|0.996;T|0.004	22
PIGF	5281	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46839477	46839477	+	Silent	SNP	T	T	A	rs1824050	byfrequency;alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PIGF	NM_002643	exon4	c.A327T	p.A109A	.	.	323	152	502	2	T|0.797;C|0.203	226
PIK3R4	30849	bcgsc.ca	37	3	130409446	130409446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PIK3R4	NM_014602	exon14	c.T3151C	p.C1051R	.	.	166	6	141	0	.	1471
PIKFYVE	200576	bcgsc.ca	37	2	209218713	209218713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PIKFYVE	NM_015040	exon40	c.T5936C	p.L1979P	.	.	169	7	196	0	.	583
PIWIL4	143689	bcgsc.ca	37	11	94322348	94322348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PIWIL4	NM_152431	exon8	c.T976C	p.F326L	.	.	401	9	363	0	.	91
PKD1L1	168507	bcgsc.ca	37	7	47851512	47851512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PKD1L1	NM_138295	exon50	c.T7484C	p.I2495T	.	.	108	5	101	1	.	145
PKHD1L1	93035	bcgsc.ca	37	8	110461607	110461607	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PKHD1L1	NM_177531	exon40	c.C6066A	p.T2022T	.	.	208	6	215	0	.	145
PKP2	5318	bcgsc.ca	37	12	33021863	33021863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PKP2	NM_004572	exon4	c.A1168G	p.R390G	.	.	142	6	130	0	.	92
PLA2G12A	81579	bcgsc.ca	37	4	110650846	110650846	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLA2G12A	NM_030821	exon1	c.C120T	p.N40N	.	.	83	5	142	2	.	226
PLA2G6	8398	bcgsc.ca	37	22	38524404	38524404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLA2G6	NM_003560	exon9	c.G1220T	p.R407I	.	.	92	5	67	0	.	91
PLAU	5328	bcgsc.ca	37	10	75673774	75673774	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLAU	NM_002658	exon8	c.G717A	p.L239L	.	.	54	4	112	0	.	118
PLCXD2	257068	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	111432938	111432938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLCXD2	NM_001185106	exon3	c.G829T	p.G277C	.	.	68	33	48	1	.	227
PLD3	23646	ucsc.edu;bcgsc.ca	37	19	40880392	40880392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLD3	NM_012268	exon10	c.C884T	p.A295V	.	.	38	4	76	0	.	228
PLEKHA1	59338	bcgsc.ca	37	10	124152824	124152824	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLEKHA1	NM_001195608	exon3	c.A108G	p.E36E	.	.	76	4	174	0	.	226
PLEKHF2	79666	bcgsc.ca	37	8	96166514	96166514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLEKHF2	NM_024613	exon2	c.C242A	p.P81H	.	.	123	6	170	0	.	92
PLEKHG2	64857	bcgsc.ca	37	19	39913880	39913880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLEKHG2	NM_022835	exon18	c.A2186G	p.K729R	.	.	92	5	191	0	.	274
PLXND1	23129	bcgsc.ca	37	3	129305439	129305439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PLXND1	NM_015103	exon3	c.T1612C	p.S538P	.	.	135	7	124	1	.	90
PMFBP1	83449	bcgsc.ca	37	16	72156838	72156838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PMFBP1	NM_031293	exon19	c.A2743G	p.I915V	.	.	140	5	99	0	.	92
PNO1	56902	bcgsc.ca	37	2	68385558	68385558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PNO1	NM_020143	exon2	c.A254G	p.Y85C	.	.	125	6	154	0	.	68
PNPLA6	10908	bcgsc.ca	37	19	7606480	7606480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PNPLA6	NM_001166111	exon11	c.A1105G	p.R369G	.	.	71	4	86	0	.	47
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151414583	151414583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	POGZ	NM_145796	exon2	c.A98G	p.Y33C	.	.	265	87	207	0	.	93
POLE2	5427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50140883	50140883	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	POLE2	NM_001197331	exon5	c.T375C	p.D125D	.	.	167	78	182	0	.	229
POMT1	10585	bcgsc.ca	37	9	134381501	134381501	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	POMT1	NM_001136113	exon3	c.T123C	p.V41V	.	.	78	4	87	0	.	91
POTEF	728378	broad.mit.edu	37	2	130872873	130872873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	POTEF	NM_001099771	exon4	c.G550A	p.G184R	.	.	1143	11	1099	1	.	27
PPP2R5C	5527	broad.mit.edu	37	14	102276351	102276351	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PPP2R5C	NM_002719	exon1	c.C72T	p.P24P	.	.	383	7	332	1	.	659
PPTC7	160760	bcgsc.ca	37	12	110974868	110974868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PPTC7	NM_139283	exon6	c.T889C	p.S297P	.	.	127	6	126	0	.	90
PRIM1	5557	bcgsc.ca	37	12	57146028	57146028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_000946	exon1	c.A55G	p.R19G	.	.	72	4	65	0	.	.
PRKCD	5580	bcgsc.ca	37	3	53213653	53213653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PRKCD	NM_212539	exon3	c.T176C	p.F59S	.	.	169	7	155	0	.	1378
PROC	5624	ucsc.edu;bcgsc.ca	37	2	128184733	128184733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PROC	NM_000312	exon8	c.A731G	p.H244R	.	.	53	6	42	0	.	90
PROM1	8842	bcgsc.ca	37	4	15991355	15991355	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PROM1	NM_006017	exon18	c.G2076A	p.L692L	.	.	236	6	431	1	.	207
PRPF4B	8899	broad.mit.edu	37	6	4060692	4060692	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PRPF4B	NM_003913	exon15	c.T2866C	p.L956L	.	.	388	8	396	0	.	1308
PRX	57716	bcgsc.ca	37	19	40902229	40902229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PRX	NM_181882	exon7	c.A2030G	p.E677G	.	.	85	5	143	0	.	92
PSME4	23198	bcgsc.ca	37	2	54147372	54147372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PSME4	NM_014614	exon19	c.T2378C	p.V793A	.	.	77	4	121	0	.	275
PSME4	23198	bcgsc.ca	37	2	54175649	54175649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PSME4	NM_014614	exon3	c.G409T	p.D137Y	.	.	87	4	137	0	.	275
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	98268744	98268744	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PTCH1	NM_000264	exon2	c.G339T	p.A113A	.	.	200	90	181	0	.	3532
PTPN22	26191	bcgsc.ca	37	1	114401098	114401098	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PTPN22	NM_012411	exon5	c.369+2T>C	.	.	.	78	4	67	0	.	227
PTPRO	5800	bcgsc.ca	37	12	15652408	15652408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	PTPRO	NM_002848	exon4	c.T541C	p.W181R	.	.	221	7	491	0	.	271
RAB28	9364	bcgsc.ca	37	4	13481063	13481063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RAB28	NM_004249	exon2	c.A163G	p.T55A	.	.	86	5	189	0	.	228
RABL6	55684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139732077	139732077	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001173988	exon9	c.G1092A	p.G364G	.	.	82	24	32	0	.	.
RAD54L2	23132	bcgsc.ca	37	3	51679244	51679244	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RAD54L2	NM_015106	exon16	c.A2655G	p.S885S	.	.	237	6	251	0	.	93
RADIL	55698	ucsc.edu	37	7	4839314	4839314	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RADIL	NM_018059	exon14	c.G3069T	p.G1023G	.	.	51	4	41	0	.	994
RBM3	5935	bcgsc.ca	37	X	48433584	48433584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RBM3	NM_006743	exon2	c.G16A	p.G6R	.	.	55	4	66	0	.	131
RBM45	129831	bcgsc.ca	37	2	178977426	178977426	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RBM45	NM_152945	exon1	c.C153T	p.I51I	.	.	195	7	217	0	.	22
RBM6	10180	broad.mit.edu	37	3	50099463	50099463	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RBM6	NM_005777	exon15	c.C2508T	p.T836T	.	.	374	7	354	0	.	280
RELN	5649	bcgsc.ca	37	7	103155871	103155871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RELN	NM_173054	exon50	c.T7880C	p.L2627P	.	.	69	7	63	0	.	574
RELT	84957	ucsc.edu	37	11	73106232	73106232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RELT	NM_152222	exon10	c.T1147C	p.S383P	.	.	51	6	53	1	.	228
REP15	387849	bcgsc.ca	37	12	27849927	27849927	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	REP15	NM_001029874	exon1	c.A432G	p.R144R	.	.	78	4	105	0	.	91
REST	5978	bcgsc.ca	37	4	57798226	57798226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	REST	NM_001193508	exon4	c.T3202C	p.S1068P	.	.	143	6	284	0	.	232
REV3L	5980	bcgsc.ca	37	6	111665128	111665128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	REV3L	NM_002912	exon21	c.G7538T	p.R2513I	.	.	63	4	84	0	.	294
RHO	6010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129252455	129252455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RHO	NM_000539	exon5	c.G941A	p.R314Q	.	.	68	33	33	0	.	90
RP1L1	94137	bcgsc.ca	37	8	10469101	10469101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RP1L1	NM_178857	exon4	c.A2507G	p.E836G	.	.	56	6	53	0	.	139
RPGRIP1	57096	bcgsc.ca	37	14	21811350	21811350	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RPGRIP1	NM_020366	exon21	c.T3495C	p.P1165P	.	.	118	5	129	0	.	140
RPS6KC1	26750	broad.mit.edu	37	1	213414877	213414877	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RPS6KC1	NM_012424	exon11	c.A2058G	p.E686E	.	.	456	9	281	0	.	417
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17596122	17596122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RRBP1	NM_004587	exon23	c.C2705T	p.A902V	.	.	99	43	97	0	.	92
RRP12	23223	bcgsc.ca	37	10	99126818	99126818	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RRP12	NM_015179	exon26	c.C3027T	p.T1009T	.	.	85	4	63	0	.	92
RRP1B	23076	bcgsc.ca	37	21	45113228	45113228	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RRP1B	NM_015056	exon16	c.A2241G	p.T747T	.	.	83	4	64	0	.	91
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45092191	45092191	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RRP1B	NM_015056	exon3	c.A216G	p.E72E	.	.	118	54	139	0	.	91
RSPH4A	345895	bcgsc.ca	37	6	116948797	116948797	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RSPH4A	NM_001161664	exon3	c.A927G	p.E309E	.	.	225	6	256	0	.	90
RTN2	6253	bcgsc.ca	37	19	45988992	45988992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	RTN2	NM_005619	exon11	c.T1612C	p.S538P	.	.	75	4	104	0	.	93
SARM1	23098	bcgsc.ca	37	17	26715222	26715222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_015077	exon7	c.G1657A	p.G553S	.	.	86	4	59	0	.	.
SCAF11	9169	bcgsc.ca	37	12	46355550	46355550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SCAF11	NM_004719	exon3	c.A152G	p.K51R	.	.	141	5	130	0	.	93
SCG3	29106	bcgsc.ca	37	15	51993378	51993378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SCG3	NM_013243	exon10	c.A1144G	p.S382G	.	.	182	6	128	0	.	91
SCN11A	11280	bcgsc.ca	37	3	38888793	38888793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SCN11A	NM_014139	exon26	c.A4768G	p.I1590V	.	.	95	5	104	0	.	99
SCYL2	55681	bcgsc.ca	37	12	100727952	100727952	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SCYL2	NM_017988	exon14	c.T1770C	p.S590S	.	.	54	4	69	0	.	336
SDK2	54549	ucsc.edu	37	17	71357906	71357906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SDK2	NM_001144952	exon39	c.T5384G	p.V1795G	.	.	196	44	117	17	.	24
SEC24C	9632	bcgsc.ca	37	10	75525628	75525628	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SEC24C	NM_004922	exon11	c.A1437G	p.L479L	.	.	222	6	341	0	.	92
SEC31A	22872	bcgsc.ca	37	4	83788382	83788382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SEC31A	NM_001077206	exon9	c.T970C	p.F324L	.	.	115	6	196	0	.	268
SEL1L3	23231	bcgsc.ca	37	4	25836845	25836845	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_015187	exon3	c.T834C	p.T278T	.	.	85	4	159	0	.	.
SELO	0	bcgsc.ca	37	22	50647090	50647090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	55	4	103	0	.	.
SELP	6403	broad.mit.edu	37	1	169586543	169586543	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SELP	NM_003005	exon3	c.G204A	p.V68V	.	.	1057	9	760	0	.	94
SEMA5B	54437	bcgsc.ca	37	3	122647850	122647850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SEMA5B	NM_001256347	exon6	c.A692G	p.K231R	.	.	83	5	64	0	.	157
SEMA6A	57556	bcgsc.ca	37	5	115783435	115783435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SEMA6A	NM_020796	exon19	c.T1967C	p.I656T	.	.	119	5	120	0	.	92
SEMA7A	8482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74709733	74709733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SEMA7A	NM_003612	exon6	c.C604T	p.R202W	.	.	208	45	127	1	.	153
SERINC2	347735	bcgsc.ca	37	1	31902283	31902283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SERINC2	NM_001199038	exon9	c.A938G	p.N313S	.	.	132	5	105	0	.	90
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2959566	2959566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SERPINB6	NM_001271823	exon2	c.A58G	p.M20V	.	.	155	65	130	0	.	226
SESN1	27244	bcgsc.ca	37	6	109319871	109319871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SESN1	NM_014454	exon5	c.T817C	p.S273P	.	.	171	6	165	1	.	227
SETDB2	83852	bcgsc.ca	37	13	50057028	50057028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SETDB2	NM_031915	exon10	c.A1348G	p.T450A	.	.	232	6	469	1	.	91
SF3A2	8175	bcgsc.ca	37	19	2243379	2243379	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SF3A2	.	.	.	.	.	.	73	6	49	0	.	90
SFXN4	119559	bcgsc.ca	37	10	120907322	120907322	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SFXN4	NM_213649	exon12	c.T783C	p.A261A	.	.	83	4	181	0	.	91
SGCB	6443	bcgsc.ca	37	4	52895014	52895014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SGCB	NM_000232	exon4	c.T503C	p.M168T	.	.	119	5	224	0	.	90
SGTA	6449	bcgsc.ca	37	19	2761502	2761502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SGTA	NM_003021	exon8	c.T655C	p.F219L	.	.	59	4	60	0	.	91
SH2D3C	10044	broad.mit.edu	37	9	130501107	130501107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SH2D3C	NM_170600	exon12	c.C2501T	p.A834V	.	.	146	5	126	0	.	228
SH3BP2	6452	bcgsc.ca	37	4	2834131	2834131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SH3BP2	NM_001145856	exon11	c.T1651C	p.S551P	.	.	66	4	92	0	.	514
SHROOM2	357	bcgsc.ca	37	X	9864726	9864726	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SHROOM2	NM_001649	exon4	c.C2778T	p.D926D	.	.	62	4	67	0	.	198
SIDT1	54847	bcgsc.ca	37	3	113303615	113303615	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SIDT1	NM_017699	exon8	c.A906G	p.K302K	.	.	110	5	120	0	.	95
SIK3	23387	broad.mit.edu	37	11	116968924	116968924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SIK3	NM_025164	exon1	c.C34T	p.R12C	.	.	31	3	17	0	.	919
SLC22A2	6582	bcgsc.ca	37	6	160645784	160645784	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC22A2	NM_003058	exon10	c.A1554G	p.K518K	.	.	95	5	100	0	.	154
SLC26A11	284129	bcgsc.ca	37	17	78226484	78226484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC26A11	NM_173626	exon18	c.T1790C	p.L597P	.	.	85	4	57	0	.	90
SLC35G6	643664	bcgsc.ca	37	17	7386176	7386176	+	Silent	SNP	G	G	C	rs76776066	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001102614	exon2	c.G873C	p.V291V	.	.	291	31	351	11	.	.
SLC5A5	6528	bcgsc.ca	37	19	17994749	17994749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC5A5	NM_000453	exon12	c.A1420G	p.R474G	.	.	77	5	50	0	.	93
SLC5A9	200010	bcgsc.ca	37	1	48694804	48694804	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC5A9	NM_001135181	exon4	c.A369G	p.R123R	.	.	72	4	70	0	.	93
SLC6A13	6540	bcgsc.ca	37	12	333156	333156	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC6A13	NM_016615	exon12	c.1311+2T>C	.	.	.	74	4	78	0	.	90
SLC6A7	6534	bcgsc.ca	37	5	149585168	149585168	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC6A7	NM_014228	exon13	c.A1683G	p.E561E	.	.	83	5	77	0	.	90
SLC7A13	157724	bcgsc.ca	37	8	87242490	87242490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC7A13	NM_138817	exon1	c.A17G	p.K6R	.	.	72	4	88	0	.	90
SLC9A2	6549	broad.mit.edu	37	2	103281648	103281648	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC9A2	NM_003048	exon3	c.G843A	p.V281V	.	.	770	11	778	1	.	157
SLC9A4	389015	bcgsc.ca	37	2	103095296	103095296	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC9A4	NM_001011552	exon2	c.257-2A>G	.	.	.	95	4	106	0	.	92
SLC9A7	84679	bcgsc.ca	37	X	46513095	46513095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLC9A7	NM_001257291	exon8	c.T1096C	p.F366L	.	.	83	4	75	0	.	132
SLCO1C1	53919	bcgsc.ca	37	12	20893125	20893125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLCO1C1	NM_017435	exon12	c.A1556G	p.Y519C	.	.	81	4	205	0	.	97
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168119629	168119629	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLIT3	NM_001271946	exon29	c.C3180T	p.P1060P	.	.	90	9	73	0	.	95
SLITRK3	22865	bcgsc.ca	37	3	164907059	164907059	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SLITRK3	NM_014926	exon2	c.A1560G	p.P520P	.	.	114	5	92	0	.	100
SMCHD1	23347	bcgsc.ca	37	18	2705728	2705728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SMCHD1	NM_015295	exon14	c.A1879G	p.S627G	.	.	85	4	137	2	.	46
SND1	27044	broad.mit.edu;bcgsc.ca	37	7	127528038	127528038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SND1	NM_014390	exon13	c.A1427G	p.Y476C	.	.	90	5	87	0	.	92
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1079315	1079315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SNTG2	NM_018968	exon2	c.G184T	p.V62L	.	.	90	36	110	0	.	136
SNX25	83891	bcgsc.ca	37	4	186168530	186168530	+	Missense_Mutation	SNP	A	A	G	rs200503936		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SNX25	NM_031953	exon2	c.A20G	p.E7G	.	.	375	9	346	2	A|0.999;G|0.000	273
SPAG17	200162	broad.mit.edu;bcgsc.ca	37	1	118570939	118570939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SPAG17	NM_206996	exon26	c.C3688T	p.P1230S	.	.	251	8	215	0	.	158
SPATA17	128153	bcgsc.ca	37	1	217947831	217947831	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SPATA17	NM_138796	exon7	c.T675C	p.S225S	.	.	186	8	97	0	.	69
SPATA7	55812	bcgsc.ca	37	14	88904252	88904252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SPATA7	NM_018418	exon12	c.A1286G	p.K429R	.	.	118	6	138	0	.	91
SPATC1L	84221	bcgsc.ca	37	21	47588310	47588310	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001142854	exon3	c.C456T	p.P152P	.	.	124	5	109	0	.	.
SPEF2	79925	bcgsc.ca	37	5	35779273	35779273	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SPEF2	NM_024867	exon30	c.T4272C	p.I1424I	.	.	127	6	156	0	.	26
SPG7	6687	broad.mit.edu;bcgsc.ca	37	16	89592859	89592859	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SPG7	NM_199367	exon5	c.A741G	p.R247R	.	.	222	7	284	0	.	226
SPOPL	339745	bcgsc.ca	37	2	139307845	139307845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SPOPL	NM_001001664	exon2	c.A59G	p.E20G	.	.	90	4	116	0	.	92
SRBD1	55133	bcgsc.ca	37	2	45773976	45773976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SRBD1	NM_018079	exon14	c.G1769A	p.C590Y	.	.	72	4	92	0	.	90
SRPK1	6732	bcgsc.ca	37	6	35806208	35806208	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SRPK1	NM_003137	exon16	c.1691-2A>G	.	.	.	130	6	112	1	.	359
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93007604	93007604	+	Missense_Mutation	SNP	G	G	T	rs149476731		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ST8SIA2	NM_006011	exon6	c.G1117T	p.G373W	.	.	86	26	45	0	G|1.000;T|0.000	90
STIL	6491	bcgsc.ca	37	1	47748072	47748072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	STIL	NM_003035	exon11	c.A1193G	p.E398G	.	.	108	6	115	2	.	659
STK10	6793	bcgsc.ca	37	5	171532679	171532679	+	Missense_Mutation	SNP	C	C	A	rs202191993	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	STK10	NM_005990	exon7	c.G851T	p.S284I	.	.	55	4	49	0	C|0.999;G|0.001	1022
STRN	6801	bcgsc.ca	37	2	37121126	37121126	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	STRN	NM_003162	exon7	c.A846G	p.K282K	.	.	165	5	284	0	.	91
SULT1C3	442038	broad.mit.edu;bcgsc.ca	37	2	108869877	108869877	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SULT1C3	NM_001008743	exon3	c.T378C	p.S126S	.	.	257	7	298	0	.	91
SUPT16H	11198	bcgsc.ca	37	14	21828578	21828578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SUPT16H	NM_007192	exon18	c.T2171C	p.L724P	.	.	213	6	204	1	.	90
SVEP1	79987	bcgsc.ca	37	9	113163172	113163172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SVEP1	NM_153366	exon40	c.A9784G	p.T3262A	.	.	180	6	184	1	.	75
SYNE2	23224	bcgsc.ca	37	14	64430662	64430662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SYNE2	NM_182914	exon10	c.A934G	p.K312E	.	.	136	5	186	0	.	164
SYTL1	84958	bcgsc.ca	37	1	27671843	27671843	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SYTL1	NM_032872	exon2	c.C18T	p.H6H	.	.	73	4	62	0	.	91
SZT2	23334	bcgsc.ca	37	1	43868883	43868883	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	SZT2	NM_015284	exon2	c.A63G	p.K21K	.	.	245	9	283	1	.	144
TACC2	10579	bcgsc.ca	37	10	123843285	123843285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TACC2	NM_206862	exon4	c.T1270C	p.S424P	.	.	74	4	123	0	.	296
TAPBP	6892	bcgsc.ca	37	6	33272968	33272968	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TAPBP	NM_172208	exon4	c.T666C	p.P222P	.	.	92	5	86	1	.	23
TCEB3C	162699	bcgsc.ca;mdanderson.org	37	18	44555088	44555088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TCEB3C	NM_145653	exon1	c.T1126C	p.Y376H	.	.	1082	61	917	3	.	68
TDRD1	56165	bcgsc.ca	37	10	115970667	115970667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TDRD1	NM_198795	exon13	c.T1601C	p.L534S	.	.	137	5	302	2	.	90
TFDP3	51270	bcgsc.ca	37	X	132351942	132351942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TFDP3	NM_016521	exon1	c.A346G	p.M116V	.	.	86	4	80	0	.	131
TGFBRAP1	9392	ucsc.edu	37	2	105886132	105886132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TGFBRAP1	NM_004257	exon11	c.A2003G	p.E668G	.	.	42	5	47	0	.	91
TH	7054	broad.mit.edu;bcgsc.ca	37	11	2185482	2185482	+	Missense_Mutation	SNP	G	G	A	rs201219944		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TH	NM_199292	exon14	c.C1568T	p.A523V	.	.	61	4	64	0	G|0.996;A|0.005	90
THSD7A	221981	bcgsc.ca	37	7	11416205	11416205	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	THSD7A	NM_015204	exon26	c.T4881C	p.Y1627Y	.	.	75	4	91	0	.	71
TIE1	7075	bcgsc.ca	37	1	43778902	43778902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	TIE1,NS,carcinoma,+1	TIE1	NM_005424	exon13	c.C2024T	p.S675F	.	.	152	5	134	0	.	1404
TIMM44	10469	bcgsc.ca	37	19	7997597	7997597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TIMM44	NM_006351	exon9	c.C902T	p.T301M	.	.	69	6	64	0	.	91
TLE4	7091	bcgsc.ca	37	9	82337898	82337898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TLE4	NM_007005	exon19	c.A2162G	p.K721R	.	.	164	6	152	0	.	524
TLN1	7094	bcgsc.ca	37	9	35705810	35705810	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TLN1	NM_006289	exon42	c.C5550T	p.F1850F	.	.	60	4	67	0	.	609
TLR10	81793	bcgsc.ca	37	4	38776190	38776190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TLR10	NM_001017388	exon2	c.T1022C	p.M341T	.	.	176	6	356	0	.	522
TM4SF18	116441	bcgsc.ca	37	3	149040223	149040223	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TM4SF18	NM_001184723	exon4	c.T411C	p.R137R	.	.	142	5	200	0	.	69
TM9SF1	10548	bcgsc.ca	37	14	24658813	24658813	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TM9SF1	NM_006405	exon6	c.C1629A	p.G543G	.	.	52	4	68	1	.	91
TMC1	117531	bcgsc.ca	37	9	75309562	75309562	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TMC1	NM_138691	exon7	c.T168C	p.P56P	.	.	193	6	162	0	.	91
TMCC1	23023	broad.mit.edu	37	3	129389837	129389837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TMCC1	NM_001017395	exon4	c.A847G	p.K283E	.	.	561	9	532	2	.	91
TMEM185A	84548	bcgsc.ca	37	X	148690330	148690330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TMEM185A	NM_032508	exon3	c.A407G	p.H136R	.	.	169	6	164	0	.	131
TMEM239	100288797	bcgsc.ca	37	20	2797574	2797574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001167670	exon2	c.T374C	p.L125P	.	.	118	5	79	2	.	.
TMEM256	254863	bcgsc.ca	37	17	7306681	7306681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_152766	exon3	c.T146C	p.F49S	.	.	178	8	330	0	.	.
TMEM59	9528	bcgsc.ca	37	1	54507413	54507413	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TMEM59	NM_004872	exon5	c.T609C	p.S203S	.	.	196	6	216	0	.	90
TPK1	27010	broad.mit.edu;bcgsc.ca	37	7	144463046	144463046	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TPK1	NM_001042482	exon4	c.44-2A>G	.	.	.	155	5	182	0	.	188
TRMT61B	55006	bcgsc.ca	37	2	29092502	29092502	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TRMT61B	NM_017910	exon1	c.A642G	p.P214P	.	.	128	5	197	1	.	90
TROVE2	6738	broad.mit.edu	37	1	193038648	193038648	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TROVE2	NM_004600	exon2	c.G464A	p.W155X	.	.	283	7	166	0	.	115
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77416900	77416900	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TRPM6	NM_017662	exon16	c.G1923A	p.A641A	.	.	192	84	168	0	.	335
TTC27	55622	bcgsc.ca	37	2	32853363	32853363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TTC27	NM_017735	exon1	c.T4C	p.W2R	.	.	291	8	251	1	.	90
TTN	7273	bcgsc.ca	37	2	179664611	179664611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TTN	NM_001267550	exon5	c.A610G	p.T204A	.	.	240	6	260	0	.	636
TULP2	7288	bcgsc.ca	37	19	49388778	49388778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	TULP2	NM_003323	exon9	c.A988G	p.T330A	.	.	171	7	247	0	.	93
UBA6	55236	bcgsc.ca	37	4	68501217	68501217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UBA6	NM_018227	exon20	c.A1796G	p.H599R	.	.	99	5	200	0	.	90
UGT2B15	7366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69535667	69535667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UGT2B15	NM_001076	exon1	c.T670C	p.W224R	.	.	184	147	429	2	.	46
ULK2	9706	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19705133	19705133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ULK2	NM_001142610	exon16	c.G1398T	p.R466S	.	.	176	64	132	1	.	334
UNC13B	10497	bcgsc.ca	37	9	35310647	35310647	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UNC13B	NM_006377	exon9	c.A945G	p.K315K	.	.	142	6	140	0	.	157
UNC79	57578	bcgsc.ca	37	14	94156643	94156643	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_020818	exon46	c.A6852G	p.Q2284Q	.	.	202	6	194	0	.	.
UPF3A	65110	bcgsc.ca	37	13	115072156	115072156	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UPF3A	.	.	.	.	.	.	65	4	52	0	.	91
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UPF3A	NM_080687	exon2	c.C271T	p.L91L	.	.	53	4	26	1	.	91
UPK1B	7348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	118909118	118909118	+	Nonsense_Mutation	SNP	T	T	A	rs113148509	alternate_allele	TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UPK1B	NM_006952	exon4	c.T297A	p.Y99X	.	.	443	178	523	0	T|0.500;C|0.500	90
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216496858	216496858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	USH2A	NM_007123	exon8	c.G1508A	p.R503K	.	.	359	104	217	1	.	115
USP11	8237	bcgsc.ca	37	X	47102986	47102986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	USP11	NM_004651	exon13	c.T1904C	p.L635P	.	.	60	4	52	0	.	659
USP21	27005	bcgsc.ca	37	1	161130715	161130715	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	USP21	NM_012475	exon2	c.C285T	p.P95P	.	.	199	6	100	0	.	660
USP48	84196	bcgsc.ca	37	1	22079097	22079097	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	USP48	NM_001032730	exon5	c.T588C	p.T196T	.	.	145	5	168	1	.	659
USP6NL	9712	bcgsc.ca	37	10	11505805	11505805	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	USP6NL	NM_001080491	exon14	c.A1173G	p.P391P	.	.	115	5	56	0	.	628
UTY	7404	bcgsc.ca	37	Y	15508820	15508820	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UTY	NM_001258259	exon7	c.A588G	p.P196P	.	.	88	4	100	0	.	136
UVRAG	7405	bcgsc.ca	37	11	75694453	75694453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	UVRAG	NM_003369	exon8	c.A722G	p.Q241R	.	.	100	5	130	0	.	229
VEZT	55591	bcgsc.ca	37	12	95676244	95676244	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	VEZT	NM_017599	exon8	c.T1152C	p.A384A	.	.	262	7	249	1	.	23
VGLL1	51442	bcgsc.ca	37	X	135638619	135638619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	VGLL1	NM_016267	exon5	c.A698G	p.E233G	.	.	55	4	30	0	.	130
VPS13D	55187	broad.mit.edu	37	1	12423278	12423278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	VPS13D	NM_015378	exon52	c.A10423G	p.N3475D	.	.	289	6	295	0	.	95
VRK2	7444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	58373591	58373591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	VRK2	NM_001130480	exon12	c.G1164C	p.M388I	.	.	343	145	402	0	.	334
VSIG10L	147645	bcgsc.ca	37	19	51840705	51840705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001163922	exon7	c.A2092G	p.S698G	.	.	67	4	101	0	.	.
VWA5B2	90113	bcgsc.ca	37	3	183957207	183957207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_138345	exon14	c.T2228C	p.L743P	.	.	69	5	35	0	.	.
WBP11	51729	bcgsc.ca	37	12	14949900	14949900	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WBP11	NM_016312	exon5	c.A228G	p.K76K	.	.	95	4	165	1	.	92
WDR36	134430	bcgsc.ca	37	5	110428054	110428054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WDR36	NM_139281	exon1	c.T68C	p.L23P	.	.	159	6	180	0	.	92
WDR59	79726	bcgsc.ca	37	16	74985362	74985362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WDR59	NM_030581	exon4	c.T320C	p.V107A	.	.	218	6	210	0	.	92
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38383656	38383656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_031951	exon4	c.C2570T	p.T857I	.	.	373	182	315	1	.	.
WFS1	7466	bcgsc.ca	37	4	6303063	6303063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WFS1	NM_001145853	exon8	c.T1541C	p.L514P	.	.	75	4	134	1	.	91
WFS1	7466	bcgsc.ca	37	4	6303078	6303078	+	Missense_Mutation	SNP	C	C	T	rs201557396		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WFS1	NM_001145853	exon8	c.C1556T	p.A519V	.	.	75	4	148	0	C|0.999;T|0.000	91
WNK1	65125	bcgsc.ca	37	12	1005884	1005884	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WNK1	NM_001184985	exon24	c.A7011G	p.R2337R	.	.	55	4	45	0	.	916
WNK1	65125	bcgsc.ca	37	12	970359	970359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WNK1	NM_001184985	exon7	c.A1801G	p.T601A	.	.	133	7	138	0	.	916
WNK1	65125	bcgsc.ca	37	12	977246	977246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WNK1	NM_213655	exon10	c.T2609C	p.L870P	.	.	98	4	121	0	.	916
WWC3	55841	bcgsc.ca	37	X	10107464	10107464	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	WWC3	NM_015691	exon22	c.C3096T	p.T1032T	.	.	175	5	209	0	.	134
XG	7499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	2729446	2729446	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	XG	NM_001141919	exon10	c.C524G	p.A175G	.	.	214	196	233	3	.	131
XPNPEP1	7511	bcgsc.ca	37	10	111630492	111630492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	XPNPEP1	NM_020383	exon18	c.G1693A	p.D565N	.	.	133	5	134	0	.	94
YME1L1	10730	bcgsc.ca	37	10	27420801	27420801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	YME1L1	NM_139312	exon9	c.A1016G	p.E339G	.	.	130	5	130	0	.	91
YTHDF3	253943	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	64099147	64099147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	.	.	.	166	67	174	0	.	.
ZC3H15	55854	bcgsc.ca	37	2	187370241	187370241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZC3H15	NM_018471	exon7	c.A781G	p.R261G	.	.	252	7	328	3	.	91
ZC3H6	376940	bcgsc.ca	37	2	113080309	113080309	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZC3H6	NM_198581	exon9	c.C1170A	p.P390P	.	.	133	5	174	0	.	93
ZC3H6	376940	bcgsc.ca	37	2	113088983	113088983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZC3H6	NM_198581	exon12	c.A2488G	p.R830G	.	.	153	5	183	1	.	93
ZDHHC17	23390	bcgsc.ca	37	12	77199206	77199206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_015336	exon3	c.A307G	p.I103V	.	.	331	8	431	1	.	.
ZFAND5	7763	bcgsc.ca	37	9	74974418	74974418	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZFAND5	NM_001102421	exon4	c.T283C	p.L95L	.	.	238	7	173	0	.	90
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123965265	123965265	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZHX2	NM_014943	exon3	c.C1515A	p.S505S	.	.	40	17	31	0	.	227
ZMYM3	9203	bcgsc.ca	37	X	70465241	70465241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZMYM3	NM_005096	exon18	c.G2955A	p.M985I	.	.	181	6	151	1	.	131
ZNF100	163227	bcgsc.ca	37	19	21910310	21910310	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF100	NM_173531	exon5	c.A804G	p.K268K	.	.	77	4	107	0	.	90
ZNF117	51351	bcgsc.ca	37	7	64439062	64439062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF117	NM_015852	exon4	c.A887G	p.K296R	.	.	50	4	69	0	.	91
ZNF180	7733	bcgsc.ca	37	19	44983554	44983554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF180	NM_013256	exon4	c.A280G	p.R94G	.	.	85	4	128	0	.	92
ZNF284	342909	bcgsc.ca	37	19	44590253	44590253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001037813	exon5	c.T622C	p.C208R	.	.	114	6	246	0	.	.
ZNF285	26974	bcgsc.ca	37	19	44892060	44892060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF285	NM_152354	exon4	c.T347C	p.L116P	.	.	217	6	461	2	.	94
ZNF287	57336	bcgsc.ca	37	17	16456393	16456393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF287	NM_020653	exon6	c.G1063A	p.G355S	.	.	105	5	266	0	.	90
ZNF28	7576	bcgsc.ca	37	19	53304627	53304627	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF28	NM_006969	exon4	c.A471G	p.E157E	.	.	224	31	426	21	.	91
ZNF347	84671	bcgsc.ca	37	19	53645329	53645329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF347	NM_001172675	exon5	c.G755A	p.G252E	.	.	106	6	204	0	.	90
ZNF358	140467	bcgsc.ca	37	19	7584256	7584256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF358	NM_018083	exon2	c.C128T	p.P43L	.	.	74	4	61	0	.	90
ZNF383	163087	bcgsc.ca	37	19	37726921	37726921	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF383	NM_152604	exon4	c.A177G	p.E59E	.	.	154	6	174	0	.	92
ZNF383	163087	bcgsc.ca	37	19	37733481	37733481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF383	NM_152604	exon5	c.T343C	p.S115P	.	.	251	8	291	1	.	92
ZNF416	55659	bcgsc.ca	37	19	58083995	58083995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF416	NM_017879	exon4	c.T1277C	p.I426T	.	.	134	5	222	0	.	90
ZNF445	353274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44489484	44489484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF445	NM_181489	exon8	c.G1679T	p.R560L	.	.	92	12	114	0	.	91
ZNF469	84627	bcgsc.ca	37	16	88504751	88504751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_001127464	exon2	c.A10789G	p.R3597G	.	.	57	4	71	0	.	.
ZNF540	163255	bcgsc.ca	37	19	38091938	38091938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF540	NM_152606	exon4	c.T164C	p.I55T	.	.	83	3	91	0	.	153
ZNF557	79230	bcgsc.ca	37	19	7083185	7083185	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF557	NM_001044387	exon8	c.T723C	p.C241C	.	.	161	5	140	1	.	92
ZNF598	90850	bcgsc.ca	37	16	2052416	2052416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF598	NM_178167	exon7	c.C686T	p.A229V	.	.	62	4	49	0	.	432
ZNF674	641339	bcgsc.ca	37	X	46360071	46360071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF674	NM_001039891	exon6	c.A953G	p.K318R	.	.	162	5	196	1	.	67
ZNF680	340252	bcgsc.ca	37	7	64004692	64004692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF680	NM_178558	exon2	c.T149C	p.V50A	.	.	178	6	177	0	.	91
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30594358	30594358	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF785	NM_152458	exon3	c.741delG	p.R247fs	.	.	70	31	68	0	.	91
ZNF790	388536	bcgsc.ca	37	19	37310556	37310556	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZNF790	NM_206894	exon5	c.A690G	p.E230E	.	.	140	5	162	0	.	92
ZSCAN16	80345	bcgsc.ca	37	6	28097515	28097515	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	ZSCAN16	NM_025231	exon4	c.T834C	p.H278H	.	.	97	4	135	0	.	153
ZSWIM8	23053	bcgsc.ca	37	10	75555307	75555307	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	NM_015037	exon15	c.A2919G	p.T973T	.	.	67	4	68	0	.	.
NEIL1	79661	ucsc.edu	37	15	75646086	75646087	+	Missense_Mutation	DNP	AA	AA	GG	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	p.K242R	.	.	.	.	.	.	.	
HSPB11	51668	bcgsc.ca	37	1	54395701	54395702	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-BC-A10Y-01A-11D-A12Z-10	TCGA-BC-A10Y-11A-11D-A12Z-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	54f8357c-9dd7-4e08-bd47-a1ebedb30b62	5589b608-e6ae-4953-8a37-484d4116179b	.	.	.	.	.	p.I72K	.	.	.	.	.	.	.	
