Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA1	19	bcgsc.ca	37	9	107558407	107558407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABCA1	NM_005502	exon39	c.T5309C	p.L1770P	.	.	258	9	250	0	.	1016
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107584777	107584777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABCA1	NM_005502	exon19	c.T2828C	p.M943T	.	.	86	43	107	0	.	1016
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139904510	139904510	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABCA2	NM_212533	exon42	c.C6510T	p.F2170F	.	.	39	19	37	0	.	90
ABCA7	10347	bcgsc.ca	37	19	1043817	1043817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABCA7	NM_019112	exon10	c.A1024G	p.S342G	.	.	112	6	79	1	.	98
ABHD16A	7920	hgsc.bcm.edu	37	6	31657365	31657366	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABHD16A	NM_021160	exon12	c.1074_1075insG	p.G358fs	.	.	97	10	57	0	.	91
ABHD1	84696	bcgsc.ca	37	2	27352435	27352435	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ABHD1	NM_032604	exon5	c.C558T	p.N186N	.	.	86	4	84	0	.	90
ACOT2	10965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	74036182	74036182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACOT2	NM_006821	exon1	c.C238A	p.P80T	.	.	47	41	61	0	.	91
ACP1	52	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	277266	277266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACP1	NM_007099	exon6	c.G439A	p.V147I	.	.	365	30	400	0	.	523
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69350972	69350972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACTN1	NM_001102	exon14	c.G1548T	p.K516N	.	.	122	111	251	1	.	514
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69350974	69350974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACTN1	NM_001102	exon14	c.A1546G	p.K516E	.	.	122	110	260	0	.	514
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236881238	236881238	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ACTN2	NM_001103	exon2	c.C207A	p.G69G	.	.	345	155	392	0	.	95
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	127708372	127708372	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ADAM12	NM_003474	exon22	c.2561delC	p.P854fs	.	.	92	37	106	0	.	716
ADAM21P1	145241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70712622	70712622	+	RNA	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	339	224	632	0	.	.
ADH1A	124	bcgsc.ca	37	4	100203665	100203665	+	Silent	SNP	C	C	A	rs61732104	byfrequency;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ADH1A	NM_000667	exon6	c.G666T	p.A222A	.	.	485	33	984	26	C|0.997;T|0.003	227
AKIP1	56672	bcgsc.ca	37	11	8933124	8933124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AKIP1	NM_001206647	exon2	c.A128G	p.E43G	.	.	160	5	87	1	.	492
ALK	238	hgsc.bcm.edu;bcgsc.ca	37	2	29443612	29443612	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ALK	NM_004304	exon23	c.3605delG	p.G1202fs	.	.	115	42	89	0	.	3833
ALMS1	7840	bcgsc.ca	37	2	73800101	73800101	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ALMS1	NM_015120	exon16	c.T11094C	p.S3698S	.	.	151	5	190	2	.	142
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53823987	53823987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AMHR2	NM_020547	exon10	c.C1346A	p.T449N	.	.	218	110	219	0	.	628
ANGEL1	23357	bcgsc.ca	37	14	77275756	77275756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANGEL1	NM_015305	exon2	c.G295A	p.G99R	.	.	68	4	124	0	.	93
ANGPTL1	9068	broad.mit.edu	37	1	178821903	178821903	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANGPTL1	NM_004673	exon5	c.T1203C	p.T401T	.	.	599	11	446	0	.	90
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	14716830	14716832	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANKH	NM_054027	exon9	c.1124_1126del	p.375_376del	.	.	149	41	137	0	.	91
ANKRD46	157567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101540171	101540171	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANKRD46	NM_001270378	exon4	c.C372T	p.V124V	.	.	270	110	374	1	.	22
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101491695	101491695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ANO4	NM_178826	exon20	c.T1873A	p.W625R	.	.	231	112	316	0	.	96
AP3M2	10947	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	42022613	42022614	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AP3M2	NM_001134296	exon6	c.608_609insG	p.Q203fs	.	.	308	138	299	0	.	90
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112177044	112177044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	APC	NM_001127510	exon17	c.T5753C	p.I1918T	.	.	267	134	254	0	.	12026
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21228142	21228157	+	Frame_Shift_Del	DEL	GGAGGGAATCTCAATG	GGAGGGAATCTCAATG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GGAGGGAATCTCAATG	GGAGGGAATCTCAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	APOB	NM_000384	exon26	c.11583_11598del	p.3861_3866del	.	.	150	33	244	0	.	175
AR	367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	66766453	66766453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	AR	NM_000044	exon1	c.G1465A	p.G489R	.	.	54	21	48	0	.	661
ARHGAP22	58504	bcgsc.ca	37	10	49791023	49791023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARHGAP22	NM_001256025	exon2	c.A227G	p.K76R	.	.	132	5	122	0	.	228
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17991069	17991069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARHGEF10L	NM_018125	exon26	c.A2988C	p.E996D	.	.	60	28	62	0	.	292
ARID1A	8289	bcgsc.ca	37	1	27058023	27058027	+	Frame_Shift_Del	DEL	TGCGT	TGCGT	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	TGCGT	TGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARID1A	NM_006015	exon3	c.1731_1735del	p.577_579del	.	.	325	7	384	5	.	584
ARL6	84100	broad.mit.edu	37	3	97510650	97510650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARL6	NM_177976	exon8	c.A515G	p.E172G	.	.	421	7	505	0	.	227
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66303755	66303755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ARSG	NM_001267727	exon2	c.A121G	p.I41V	.	.	753	240	519	0	.	91
ASPG	374569	bcgsc.ca	37	14	104571678	104571678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001080464	exon10	c.A1064G	p.D355G	.	.	73	4	112	0	.	.
ASPN	54829	bcgsc.ca	37	9	95236920	95236920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ASPN	NM_001193335	exon2	c.A260G	p.H87R	.	.	243	6	236	0	.	514
ATG16L1	55054	bcgsc.ca	37	2	234173707	234173707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ATG16L1	NM_017974	exon5	c.A559G	p.N187D	.	.	99	5	122	1	.	90
ATP2B2	491	ucsc.edu	37	3	10401785	10401785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ATP2B2	NM_001001331	exon13	c.T1682C	p.L561P	.	.	44	5	25	0	.	95
BAG4	9530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38067967	38067967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BAG4	NM_004874	exon5	c.A1330C	p.K444Q	.	.	135	54	168	0	.	228
BAHCC1	57597	bcgsc.ca	37	17	79422384	79422384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BAHCC1	.	.	.	.	.	.	141	8	94	0	.	23
BCL11B	64919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	99640713	99640713	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BCL11B	NM_138576	exon4	c.C2460G	p.G820G	.	.	85	38	71	1	.	1147
BMP1	649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22051571	22051571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BMP1	NM_001199	exon10	c.G1181T	p.G394V	.	.	162	62	164	3	.	155
BTBD1	53339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83687553	83687553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BTBD1	NM_025238	exon7	c.G1196A	p.S399N	.	.	332	166	388	0	.	91
BTBD6	90135	broad.mit.edu	37	14	105716365	105716365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	BTBD6	NM_033271	exon5	c.A814G	p.K272E	.	.	20	4	45	1	.	90
C12orf40	283461	bcgsc.ca	37	12	40115026	40115026	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	C12orf40	NM_001031748	exon13	c.A1932G	p.G644G	.	.	235	6	254	0	.	96
C1orf170	84808	hgsc.bcm.edu	37	1	915475	915476	+	RNA	INS	-	-	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	C1orf170	.	.	.	.	.	.	237	24	212	0	.	68
C5orf20	140947	bcgsc.ca	37	5	134782478	134782478	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_130848	exon1	c.A321G	p.S107S	.	.	161	5	150	1	.	.
C8orf31	286122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144124680	144124680	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	C8orf31	NM_173687	exon3	c.186+1G>A	.	.	.	29	11	27	0	.	91
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24472172	24472172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CABIN1	NM_001199281	exon19	c.A2687T	p.H896L	.	.	297	147	270	0	.	94
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201046155	201046155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CACNA1S	NM_000069	exon12	c.G1720A	p.A574T	.	.	646	400	420	1	.	94
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	13054680	13054680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CALR	NM_004343	exon9	c.G1207T	p.E403X	.	.	388	192	424	1	.	91
CAPZA3	93661	broad.mit.edu	37	12	18891781	18891781	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CAPZA3	NM_033328	exon1	c.T579C	p.A193A	.	.	184	6	193	0	.	91
CARD11	84433	bcgsc.ca	37	7	2954990	2954990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CARD11	NM_032415	exon21	c.A2720G	p.E907G	.	.	121	5	137	0	.	870
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2979547	2979547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CARD11	NM_032415	exon6	c.C700T	p.H234Y	.	.	350	169	422	0	.	870
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14038069	14038069	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CC2D1A	NM_017721	exon22	c.G2307A	p.E769E	.	.	221	9	217	0	.	90
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	57364549	57364549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCBE1	NM_133459	exon1	c.G26T	p.G9V	.	.	52	25	32	0	.	93
CCDC102A	92922	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57549306	57549306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCDC102A	NM_033212	exon8	c.G1470T	p.E490D	.	.	60	57	92	1	.	91
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31683115	31683115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001257968	exon11	c.C2209A	p.Q737K	.	.	189	88	190	0	.	.
CCDC168	643677	broad.mit.edu	37	13	103396973	103396973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001146197	exon4	c.A6074G	p.K2025R	.	.	601	8	636	0	.	.
CCDC59	29080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	82752141	82752141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCDC59	NM_014167	exon1	c.G15T	p.R5S	.	.	53	24	38	0	.	90
CCDC60	160777	bcgsc.ca	37	12	119966431	119966431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCDC60	NM_178499	exon12	c.A1241G	p.E414G	.	.	204	6	248	0	.	93
CCRL2	9034	mdanderson.org	37	3	46449560	46449560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CCRL2	NM_001130910	exon2	c.G26A	p.G9D	.	.	26	11	31	1	.	569
CD37	951	bcgsc.ca	37	19	49839009	49839009	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CD37	NM_001774	exon2	c.C108T	p.I36I	.	.	81	4	58	0	.	90
CD7	924	hgsc.bcm.edu	37	17	80273282	80273283	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CD7	NM_006137	exon4	c.638_639insG	p.D213fs	.	.	86	9	73	0	.	90
CDC73	79577	bcgsc.ca	37	1	193104579	193104579	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CDC73	NM_024529	exon4	c.T366C	p.T122T	.	.	464	9	451	0	.	1009
CDH18	1016	broad.mit.edu	37	5	19612576	19612576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CDH18	NM_001167667	exon6	c.G778A	p.D260N	.	.	463	6	363	0	.	159
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29873915	29873915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CDIPT	NM_006319	exon2	c.T170C	p.L57P	.	.	138	63	124	0	.	90
CDT1	81620	bcgsc.ca	37	16	88872214	88872214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CDT1	NM_030928	exon5	c.A769G	p.T257A	.	.	67	4	67	0	.	227
CELSR1	9620	bcgsc.ca	37	22	46795681	46795681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CELSR1	NM_014246	exon10	c.A5345G	p.K1782R	.	.	156	5	136	0	.	525
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104079539	104079539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CENPE	NM_001813	exon24	c.A2951T	p.K984I	.	.	90	77	279	0	.	277
CHD9	80205	hgsc.bcm.edu;bcgsc.ca	37	16	53352155	53352156	+	Frame_Shift_Ins	INS	-	-	AAAAAGAC	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHD9	NM_025134	exon37	c.7568_7569insAAAAAGAC	p.Q2523fs	.	.	50	26	370	0	.	272
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	430967	430967	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHL1	NM_001253388	exon18	c.C2280G	p.G760G	.	.	159	69	187	0	.	583
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136699983	136699983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHRM2	NM_001006632	exon3	c.G371T	p.C124F	.	.	315	160	389	1	.	94
CHST8	64377	bcgsc.ca	37	19	34263890	34263890	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHST8	NM_001127895	exon5	c.A1197G	p.Q399Q	.	.	71	4	60	0	.	156
CHSY1	22856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101718497	101718497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHSY1	NM_014918	exon3	c.G1505T	p.G502V	.	.	106	48	146	1	.	90
CHUK	1147	bcgsc.ca	37	10	101960432	101960432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CHUK	NM_001278	exon15	c.T1675C	p.S559P	.	.	140	5	135	1	.	961
CKAP2	26586	bcgsc.ca	37	13	53035813	53035813	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CKAP2	NM_001098525	exon4	c.T855C	p.P285P	.	.	153	7	166	0	.	92
CLSPN	63967	broad.mit.edu	37	1	36229956	36229956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CLSPN	NM_022111	exon3	c.G493C	p.A165P	.	.	1492	13	1784	1	.	293
CMTM1	113540	bcgsc.ca	37	16	66600725	66600725	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CMTM1	NM_181268	exon1	c.A309G	p.K103K	.	.	76	4	198	5	.	90
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21627708	21627708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CNKSR2	NM_014927	exon20	c.G2665T	p.A889S	.	.	29	21	22	0	.	625
CNTN5	53942	bcgsc.ca	37	11	100211259	100211259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CNTN5	NM_001243270	exon21	c.A2795G	p.E932G	.	.	192	6	224	0	.	366
COL11A2	1302	bcgsc.ca	37	6	33145215	33145215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	COL11A2	NM_080680	exon23	c.G1945A	p.G649R	.	.	56	5	35	0	.	95
COL9A1	1297	bcgsc.ca	37	6	70980038	70980038	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	COL9A1	NM_001851	exon15	c.C1176T	p.P392P	.	.	51	4	49	0	.	94
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	6675	6675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	ENST00000361624	exon1	c.G772A	p.V258I	.	.	237	109	425	0	.	.
CPNE7	27132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89661808	89661808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CPNE7	NM_014427	exon16	c.G1561T	p.V521L	.	.	114	63	132	1	.	90
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207760833	207760833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CR1	NM_000651	exon34	c.C5633T	p.P1878L	.	.	534	241	647	1	.	93
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113519006	113519006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CSMD3	NM_198123	exon29	c.C4809A	p.N1603K	.	.	280	112	290	0	.	1132
CSMD3	114788	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113237152	113237152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CSMD3	NM_198123	exon71	c.C10972T	p.P3658S	.	.	698	335	747	4	.	1132
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68105731	68105731	+	Silent	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CSPP1	NM_024790	exon28	c.T3348G	p.G1116G	.	.	213	98	221	0	.	138
CTAGE7P	119437	bcgsc.ca	37	10	131906590	131906590	+	RNA	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	128	57	142	0	.	.
CTGF	1490	bcgsc.ca	37	6	132271240	132271240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CTGF	NM_001901	exon4	c.T602C	p.V201A	.	.	133	6	105	0	.	90
CTR9	9646	bcgsc.ca	37	11	10795599	10795599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CTR9	NM_014633	exon22	c.A2768G	p.D923G	.	.	196	7	243	0	.	92
CUL4A	8451	bcgsc.ca	37	13	113887586	113887586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CUL4A	NM_001008895	exon6	c.A608G	p.E203G	.	.	132	5	173	0	.	651
CUL4A	8451	bcgsc.ca	37	13	113900346	113900346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CUL4A	NM_001008895	exon15	c.A1607G	p.Y536C	.	.	156	5	172	0	.	651
CYP1B1	1545	bcgsc.ca	37	2	38301721	38301721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CYP1B1	NM_000104	exon2	c.T811C	p.F271L	.	.	134	5	150	0	.	515
CYP21A2	1589	broad.mit.edu	37	6	31975463	31975463	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CYP21A2	.	.	.	.	.	.	62	6	65	0	.	68
CYP26B1	56603	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72371121	72371121	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	CYP26B1	NM_019885	exon2	c.C426T	p.R142R	.	.	185	76	257	2	.	92
DEFA4	1669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6793612	6793612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DEFA4	NM_001925	exon3	c.C224G	p.T75R	.	.	102	45	67	0	.	153
DIS3	22894	broad.mit.edu	37	13	73337740	73337740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DIS3	NM_014953	exon16	c.C1976A	p.T659K	.	.	114	17	145	6	.	90
DLG3	1741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69669639	69669639	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DLG3	NM_021120	exon4	c.A633G	p.R211R	.	.	101	49	111	1	.	219
DMKN	93099	bcgsc.ca	37	19	35991450	35991450	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DMKN	NM_033317	exon12	c.A1272G	p.A424A	.	.	68	5	81	0	.	155
DNAH10	196385	bcgsc.ca	37	12	124413969	124413969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DNAH10	NM_207437	exon70	c.A12100G	p.R4034G	.	.	154	5	154	0	.	95
DOT1L	84444	broad.mit.edu;mdanderson.org	37	19	2226716	2226716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DOT1L	NM_032482	exon27	c.C4196G	p.P1399R	.	.	15	6	11	0	.	132
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2217053	2217053	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DOT1L	NM_032482	exon21	c.G2508A	p.G836G	.	.	43	17	39	0	.	132
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41505791	41505791	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DSCAM	NM_001271534	exon19	c.C3552A	p.T1184T	.	.	146	59	159	0	.	101
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107216972	107216972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DUS4L	NM_001270419	exon7	c.T641C	p.I214T	.	.	179	81	246	0	.	90
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89744457	89744457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DUSP6	NM_001946	exon2	c.A746G	p.N249S	.	.	165	72	206	0	.	846
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102478246	102478246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DYNC1H1	NM_001376	exon33	c.A6653T	p.H2218L	.	.	118	61	131	0	.	98
DYX1C1	161582	bcgsc.ca	37	15	55724748	55724748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	DYX1C1	NM_130810	exon9	c.A1100G	p.K367R	.	.	79	5	96	1	.	91
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25715971	25715971	+	Silent	SNP	G	G	A	rs151033193		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EBF2	NM_022659	exon14	c.C1392T	p.S464S	.	.	400	185	467	0	G|0.999;A|0.001	26
EDC4	23644	bcgsc.ca	37	16	67914996	67914996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EDC4	NM_014329	exon19	c.A2549G	p.Q850R	.	.	23	3	68	1	.	92
EEA1	8411	bcgsc.ca	37	12	93181769	93181769	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EEA1	NM_003566	exon22	c.A3024G	p.A1008A	.	.	272	7	725	2	.	229
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28295950	28295950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EFCAB5	NM_198529	exon4	c.A332G	p.E111G	.	.	213	113	242	1	.	70
EFHA1	221154	bcgsc.ca	37	13	22069339	22069339	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EFHA1	NM_152726	exon11	c.T1161C	p.F387F	.	.	175	6	208	0	.	90
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63092103	63092103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EHBP1	NM_015252	exon10	c.A1100T	p.D367V	.	.	86	36	138	0	.	154
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8028565	8028565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ELAVL1	NM_001419	exon6	c.G783T	p.W261C	.	.	194	105	247	0	.	90
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79412048	79412048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ELTD1	NM_022159	exon3	c.A236G	p.E79G	.	.	401	197	443	0	.	24
EPC2	26122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149519486	149519486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EPC2	NM_015630	exon5	c.G802T	p.V268F	.	.	347	143	538	0	.	137
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222347238	222347238	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EPHA4	NM_004438	exon5	c.C1152A	p.V384V	.	.	293	133	363	0	.	1441
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	96706423	96706423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	EPHA6	NM_001080448	exon3	c.T700G	p.F234V	.	.	153	80	190	0	.	1561
ETFB	2109	bcgsc.ca	37	19	51856484	51856484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ETFB	NM_001014763	exon2	c.C550A	p.P184T	.	.	55	4	68	0	.	90
FAH	2184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80465405	80465405	+	Silent	SNP	G	G	A	rs202041382		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAH	NM_000137	exon9	c.G756A	p.G252G	.	.	217	103	271	0	G|0.999;A|0.000	90
FAM102B	284611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109148855	109148855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAM102B	NM_001010883	exon3	c.G269C	p.G90A	.	.	283	121	361	0	.	135
FAM178B	51252	bcgsc.ca	37	2	97636454	97636454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAM178B	NM_001122646	exon4	c.A625G	p.R209G	.	.	145	5	119	1	.	90
FAM71A	149647	bcgsc.ca	37	1	212799946	212799946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAM71A	NM_153606	exon1	c.A1727G	p.E576G	.	.	144	15	176	10	.	94
FAM91A1	157769	bcgsc.ca	37	8	124786354	124786354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FAM91A1	NM_144963	exon2	c.A107G	p.Q36R	.	.	125	5	130	0	.	91
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48796007	48796007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FBN1	NM_000138	exon17	c.A2090C	p.Q697P	.	.	223	96	259	0	.	92
FBXO47	494188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37093476	37093476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FBXO47	NM_001008777	exon11	c.C1311A	p.F437L	.	.	278	165	183	0	.	90
FCGR2A	2212	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161480718	161480718	+	Missense_Mutation	SNP	G	G	T	rs140474146	byfrequency;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FCGR2A	NM_001136219	exon5	c.G714T	p.L238F	.	.	2046	1280	1776	26	G|0.995;A|0.005	91
FCHO1	23149	broad.mit.edu	37	19	17887078	17887078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FCHO1	NM_001161358	exon16	c.C1205T	p.S402L	.	.	254	9	189	1	.	90
FCRLA	84824	bcgsc.ca	37	1	161682966	161682966	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FCRLA	NM_001184866	exon6	c.T945C	p.P315P	.	.	277	7	197	0	.	226
FDX1L	112812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10426560	10426560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FDX1L	NM_001031734	exon1	c.C113T	p.A38V	.	.	71	28	79	0	.	23
FEM1A	55527	bcgsc.ca	37	19	4793328	4793328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FEM1A	NM_018708	exon1	c.T1462C	p.S488P	.	.	62	4	55	0	.	90
FGR	2268	bcgsc.ca	37	1	27939574	27939574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FGR	NM_001042729	exon13	c.C1441A	p.P481T	.	.	141	6	132	0	.	547
FLNA	2316	bcgsc.ca	37	X	153591118	153591118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FLNA	NM_001456	exon16	c.T2315C	p.V772A	.	.	42	6	94	2	.	599
FOXD4L1	200350	broad.mit.edu	37	2	114257095	114257095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FOXD4L1	NM_012184	exon1	c.G262A	p.E88K	.	.	215	6	150	1	.	84
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14816837	14816837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	FREM1	NM_144966	exon16	c.A2579G	p.D860G	.	.	69	20	63	0	.	138
GAB3	139716	bcgsc.ca	37	X	153928294	153928294	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GAB3	NM_001081573	exon5	c.G1110A	p.R370R	.	.	99	5	208	0	.	227
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	46060339	46060339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GABRG1	NM_173536	exon7	c.G811T	p.G271X	.	.	445	192	645	1	.	92
GABRG1	2565	ucsc.edu;bcgsc.ca	37	4	46060340	46060340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GABRG1	NM_173536	exon7	c.G810T	p.M270I	.	.	442	193	639	4	.	92
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	30827849	30827849	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GADL1	NM_207359	exon13	c.G1300T	p.E434X	.	.	292	127	313	0	.	90
GEN1	348654	bcgsc.ca	37	2	17942839	17942839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GEN1	NM_182625	exon3	c.T338C	p.V113A	.	.	288	7	351	0	.	359
GLB1	2720	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33099714	33099714	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GLB1	NM_000404	exon6	c.G600A	p.L200L	.	.	246	91	323	2	.	135
GNB2L1	10399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180666567	180666567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GNB2L1	NM_006098	exon4	c.G445C	p.E149Q	.	.	94	43	106	0	.	227
GPN2	54707	bcgsc.ca	37	1	27216177	27216177	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GPN2	NM_018066	exon1	c.G411A	p.R137R	.	.	85	5	62	0	.	90
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780403	37780403	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GPR141	NM_181791	exon1	c.T408C	p.S136S	.	.	258	108	314	1	.	93
GPR98	84059	broad.mit.edu	37	5	90151565	90151565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GPR98	NM_032119	exon82	c.T17602C	p.S5868P	.	.	863	8	599	0	.	103
GSDMD	79792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144644198	144644198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GSDMD	NM_001166237	exon11	c.C893G	p.S298C	.	.	35	17	26	0	.	90
GSN	2934	bcgsc.ca	37	9	124081078	124081078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GSN	NM_000177	exon9	c.T1264C	p.F422L	.	.	47	4	71	4	.	154
GSPT1	2935	broad.mit.edu	37	16	11971351	11971351	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GSPT1	NM_002094	exon12	c.A1515G	p.K505K	.	.	252	6	268	1	.	206
GUCY2C	2984	broad.mit.edu;bcgsc.ca	37	12	14767834	14767834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	GUCY2C	NM_004963	exon26	c.A3014G	p.D1005G	.	.	210	9	202	0	.	338
GUSBP1	728411	broad.mit.edu	37	5	21459680	21459680	+	RNA	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	179	10	145	0	.	.
HELLS	3070	bcgsc.ca	37	10	96306232	96306232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HELLS	NM_018063	exon2	c.A130G	p.R44G	.	.	83	4	120	1	.	92
HEPHL1	341208	bcgsc.ca	37	11	93834412	93834412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HEPHL1	NM_001098672	exon14	c.A2486G	p.N829S	.	.	98	5	109	0	.	71
HERC2	8924	bcgsc.ca	37	15	28421688	28421688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HERC2	NM_004667	exon63	c.A9572G	p.E3191G	.	.	136	5	163	0	.	234
HID1	283987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	72949120	72949120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_030630	exon16	c.G2033A	p.W678X	.	.	256	83	124	0	.	.
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71136836	71136836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HK1	NM_033498	exon11	c.C1034T	p.A345V	.	.	95	36	127	0	.	252
HMGCS1	3157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43298941	43298941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HMGCS1	NM_001098272	exon3	c.G127T	p.D43Y	.	.	143	73	152	1	.	90
HOXC10	3226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54382961	54382961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	HOXC10	NM_017409	exon2	c.A760G	p.K254E	.	.	127	61	174	0	.	91
IFNL1	282618	hgsc.bcm.edu	37	19	39787118	39787119	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_172140	exon1	c.57_58insG	p.A19fs	.	.	110	9	124	0	.	.
IGLON5	402665	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51830117	51830117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001101372	exon5	c.C611T	p.A204V	.	.	79	32	69	1	.	.
IGSF8	93185	bcgsc.ca	37	1	160064964	160064964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IGSF8	NM_052868	exon2	c.C137T	p.S46F	.	.	41	4	31	0	.	90
IL1RAP	3556	broad.mit.edu	37	3	190326963	190326963	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IL1RAP	NM_001167929	exon4	c.G530A	p.W177X	.	.	457	9	310	0	.	91
IL36B	27177	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113788640	113788640	+	Missense_Mutation	SNP	G	G	T	rs34754959	byfrequency;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IL36B	NM_173178	exon3	c.C106A	p.R36S	.	.	129	64	134	0	G|0.989;A|0.011	23
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu	37	19	50393089	50393089	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IL4I1	NM_172374	exon10	c.G1608A	p.T536T	.	.	147	6	156	0	.	523
ILF3	3609	bcgsc.ca	37	19	10787886	10787886	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ILF3	NM_017620	exon5	c.T459C	p.A153A	.	.	142	6	178	0	.	93
INPP5D	3635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234112784	234112784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	INPP5D	.	.	.	.	.	.	116	37	85	0	.	652
INTS9	55756	bcgsc.ca	37	8	28704265	28704265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	INTS9	NM_018250	exon4	c.A260G	p.E87G	.	.	85	4	132	0	.	24
ISL2	64843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	76632729	76632729	+	Silent	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ISL2	NM_145805	exon4	c.C624G	p.T208T	.	.	125	28	77	0	.	90
IYD	389434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	150713484	150713493	+	Frame_Shift_Del	DEL	CAGCCCCGAG	CAGCCCCGAG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	CAGCCCCGAG	CAGCCCCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IYD	NM_001164695	exon3	c.374_383del	p.125_128del	.	.	51	12	65	0	.	92
IZUMO1	284359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49248991	49248991	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	IZUMO1	NM_182575	exon2	c.T126C	p.P42P	.	.	356	161	378	0	.	91
JPH4	84502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	24040535	24040535	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	JPH4	NM_001146028	exon5	c.C1405T	p.Q469X	.	.	48	21	51	0	.	92
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	36691164	36691173	+	Frame_Shift_Del	DEL	TGAGGCGAGT	TGAGGCGAGT	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	TGAGGCGAGT	TGAGGCGAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KCNU1	NM_001031836	exon11	c.1199_1208del	p.400_403del	.	.	393	116	692	0	.	23
KIAA1024	23251	bcgsc.ca	37	15	79760529	79760529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	KIAA1024,NS,NS,-1	KIAA1024	NM_015206	exon4	c.A2554G	p.T852A	.	.	227	7	276	1	.	183
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72345442	72345442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KIF19	NM_153209	exon10	c.1167delC	p.G389fs	.	.	168	96	129	0	.	90
KIF24	347240	bcgsc.ca	37	9	34286649	34286649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KIF24	NM_194313	exon6	c.A1181G	p.E394G	.	.	94	4	137	0	.	22
KIF9	64147	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47307360	47307360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KIF9	NM_182902	exon8	c.G776A	p.G259D	.	.	144	66	192	1	.	91
KL	9365	bcgsc.ca	37	13	33638272	33638272	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KL	NM_004795	exon5	c.T2988C	p.S996S	.	.	280	7	308	2	.	155
KLK6	5653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51465087	51465087	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KLK6	NM_001012964	exon5	c.T495A	p.R165R	.	.	149	65	121	0	.	650
KLK8	11202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51503358	51503358	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KLK8	NM_144505	exon4	c.G522A	p.Q174Q	.	.	97	53	108	0	.	604
KRT34	3885	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	39534380	39534380	+	Nonsense_Mutation	SNP	G	G	T	rs138365209	byfrequency;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT34	NM_021013	exon7	c.C1242A	p.C414X	.	.	175	60	114	0	G|0.999;A|0.001	90
KRT6B	3854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52841356	52841356	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT6B	NM_005555	exon8	c.C1426T	p.L476L	.	.	205	90	219	0	.	92
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52822123	52822123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT75	NM_004693	exon7	c.G1299T	p.E433D	.	.	104	50	108	0	.	90
KRT76	51350	bcgsc.ca	37	12	53164982	53164986	+	Frame_Shift_Del	DEL	TTGCC	TTGCC	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	TTGCC	TTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT76	NM_015848	exon7	c.1281_1285del	p.427_429del	.	.	233	6	213	0	.	154
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	58	8	42	1	.	92
KRTAP5-8	57830	mdanderson.org	37	11	71249152	71249152	+	Silent	SNP	C	C	T	rs112809261	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRTAP5-8	NM_021046	exon1	c.C51T	p.C17C	.	.	183	35	129	1	C|0.896;T|0.104	44
KRTDAP	388533	ucsc.edu;bcgsc.ca	37	19	35979362	35979362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	KRTDAP	NM_207392	exon4	c.A194G	p.N65S	.	.	54	5	55	0	.	90
L3MBTL3	84456	bcgsc.ca	37	6	130374101	130374101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	L3MBTL3	NM_032438	exon7	c.A547G	p.T183A	.	.	184	6	254	2	.	96
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96332096	96332096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LNPEP	NM_005575	exon7	c.G1410T	p.W470C	.	.	345	178	456	0	.	229
LOC100130331	0	broad.mit.edu	37	1	238090313	238090313	+	RNA	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	63	36	61	0	.	.
LOC100499484	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	100056292	100056292	+	RNA	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	151	57	161	1	.	.
LOC100506023	0	bcgsc.ca	37	1	173331782	173331782	+	RNA	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	66	4	44	0	.	.
LOC440434	0	broad.mit.edu	37	17	36353609	36353609	+	RNA	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	724	8	557	2	.	.
LOC440518	0	broad.mit.edu	37	19	22785132	22785132	+	RNA	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	14	7	16	0	.	.
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	142567848	142567848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LRP1B	NM_018557	exon2	c.T205A	p.C69S	.	.	385	171	554	0	.	311
LRP4	4038	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46896621	46896621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LRP4	NM_002334	exon28	c.G3959A	p.C1320Y	.	.	51	15	52	0	.	94
LRP4-AS1	100507401	ucsc.edu	37	11	46895257	46895257	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	27	18	25	0	.	.
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	85546125	85546125	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LRRIQ1	NM_001079910	exon20	c.C4397A	p.S1466X	.	.	225	102	253	0	.	95
LYN	4067	bcgsc.ca	37	8	56854550	56854550	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LYN	NM_002350	exon2	c.A132G	p.P44P	.	.	80	4	91	0	.	1002
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34261843	34261843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	LYZL6	NM_020426	exon4	c.G404T	p.G135V	.	.	115	69	65	0	.	90
MAP2	4133	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210559239	210559239	+	Missense_Mutation	SNP	C	C	A	rs184529696	alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MAP2	NM_002374	exon7	c.C2345A	p.A782E	.	.	87	45	110	0	C|0.994;T|0.006	591
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46500283	46500283	+	Silent	SNP	A	A	G	rs139679191	by1000genomes;alternate_allele	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MAST2	NM_015112	exon29	c.A3942G	p.T1314T	.	.	300	20	193	0	A|0.999;T|0.001	581
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141731507	141731507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MGAM	NM_004668	exon13	c.G1498T	p.D500Y	.	.	396	171	463	0	.	70
MLL3	58508	broad.mit.edu	37	7	151860697	151860697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MLL3	NM_170606	exon43	c.G9965A	p.G3322D	.	.	397	7	486	1	.	1398
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10651167	10651167	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MRVI1	NM_001206880	exon5	c.G492T	p.L164L	.	.	340	158	353	0	.	25
MTCH2	23788	bcgsc.ca	37	11	47660312	47660312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MTCH2	NM_014342	exon3	c.G218A	p.G73D	.	.	133	6	105	0	.	90
MUC16	94025	hgsc.bcm.edu;bcgsc.ca	37	19	9045850	9045853	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MUC16	NM_024690	exon5	c.35778_35781del	p.11926_11927del	.	.	241	89	320	0	.	566
MUC21	394263	bcgsc.ca	37	6	30955143	30955143	+	Silent	SNP	G	G	A	rs41288705	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MUC21	NM_001010909	exon2	c.G1191A	p.T397T	.	.	299	21	165	1	G|0.967;A|0.033	92
MUC5B	727897	bcgsc.ca	37	11	1275378	1275378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_002458	exon34	c.A15274G	p.T5092A	.	.	204	6	178	2	.	.
MXRA8	54587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1289296	1289296	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MXRA8	NM_032348	exon9	c.A1235T	p.N412I	.	.	83	43	80	0	.	90
MYC	4609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	128751001	128751001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYC	NM_002467	exon2	c.G538A	p.A180T	.	.	44	27	29	0	.	2002
MYO15A	51168	bcgsc.ca	37	17	18061907	18061907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYO15A	NM_016239	exon51	c.T9038C	p.L3013P	.	.	151	8	144	1	.	97
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423432	26423432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYO18B	NM_032608	exon43	c.C7492T	p.P2498S	.	.	66	33	68	0	.	142
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62839764	62839764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	MYT1	NM_004535	exon7	c.G1215T	p.Q405H	.	.	63	25	53	0	.	704
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	33017687	33017687	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	N4BP2L2	NM_033111	exon7	c.A987G	p.K329K	.	.	331	175	379	0	.	68
NAA15	80155	bcgsc.ca	37	4	140297625	140297625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NAA15	NM_057175	exon16	c.A2054G	p.K685R	.	.	86	4	93	0	.	92
NAA25	80018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112499100	112499100	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NAA25	NM_024953	exon12	c.T1242A	p.H414Q	.	.	202	95	163	0	.	155
NADSYN1	55191	bcgsc.ca	37	11	71183530	71183530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NADSYN1	NM_018161	exon6	c.A443G	p.Q148R	.	.	196	6	208	0	.	92
NARG2	79664	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	60758888	60758888	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NARG2	NM_024611	exon5	c.G433T	p.E145X	.	.	82	32	114	1	.	227
NAV3	89795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513202	78513202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NAV3	NM_014903	exon15	c.T3226G	p.S1076A	.	.	149	55	201	1	.	279
NBPF14	25832	bcgsc.ca	37	1	148004714	148004714	+	Missense_Mutation	SNP	G	G	A	rs201202391	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NBPF14	NM_015383	exon22	c.C2600T	p.S867L	.	.	302	38	722	25	G|0.988;A|0.013	91
NBPF14	25832	bcgsc.ca	37	1	148004732	148004732	+	Missense_Mutation	SNP	A	A	C	rs77570381		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NBPF14	NM_015383	exon22	c.T2582G	p.I861R	.	.	88	60	518	48	C|1.000;|0.000	91
NBPF1	55672	bcgsc.ca	37	1	16889985	16889985	+	RNA	SNP	T	T	C	rs6603880	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	34	7	19	0	T|0.750;C|0.250	.
NCOA2	10499	bcgsc.ca	37	8	71044235	71044235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOA2	NM_006540	exon16	c.A3161G	p.Q1054R	.	.	51	4	72	0	.	639
NCOR1	9611	bcgsc.ca	37	17	16075140	16075140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOR1	NM_001190440	exon3	c.A412G	p.R138G	.	.	48	4	120	0	.	229
NCOR1	9611	hgsc.bcm.edu	37	17	15973503	15973503	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOR1	NM_001190440	exon30	c.4537delC	p.P1513fs	.	.	84	0	159	0	.	229
NCOR1	9611	hgsc.bcm.edu;bcgsc.ca	37	17	15973501	15973501	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOR1	NM_001190440	exon30	c.C4539A	p.P1513P	.	.	84	68	154	0	.	229
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15973499	15973499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NCOR1	NM_001190440	exon30	c.4541delT	p.M1514fs	.	.	82	69	150	0	.	229
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13597	13597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	ENST00000361567	exon1	c.G1261A	p.A421T	.	.	202	15	369	0	.	.
NECAB1	64168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91946573	91946573	+	Silent	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NECAB1	NM_022351	exon9	c.G735C	p.G245G	.	.	341	126	581	0	.	23
NEDD9	4739	bcgsc.ca	37	6	11190997	11190997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NEDD9	NM_001142393	exon6	c.T1105C	p.S369P	.	.	88	5	118	1	.	226
NEK1	4750	broad.mit.edu	37	4	170359261	170359261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NEK1	NM_001199397	exon28	c.T2737C	p.S913P	.	.	385	9	403	0	.	361
NGEF	25791	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233759548	233759548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NGEF	NM_019850	exon6	c.G907A	p.E303K	.	.	104	51	98	1	.	313
NHS	4810	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	17710579	17710579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NHS	NM_198270	exon3	c.843delC	p.H281fs	.	.	196	88	272	0	.	197
NLGN1	22871	bcgsc.ca	37	3	173993240	173993240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NLGN1	NM_014932	exon5	c.G782T	p.G261V	.	.	318	96	266	1	.	231
NLGN1	22871	hgsc.bcm.edu	37	3	173993239	173993240	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NLGN1	NM_014932	exon5	c.781_782del	p.261_261del	.	.	324	0	266	0	.	231
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	173993239	173993239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NLGN1	NM_014932	exon5	c.781delG	p.G261fs	.	.	324	96	266	0	.	231
NLRP11	204801	bcgsc.ca	37	19	56320734	56320734	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NLRP11	NM_145007	exon5	c.T1242C	p.G414G	.	.	114	7	132	0	.	169
NOD2	64127	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744820	50744820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NOD2	NM_022162	exon4	c.G998C	p.C333S	.	.	134	64	126	2	.	231
NOLC1	9221	ucsc.edu	37	10	103912223	103912223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NOLC1	NM_004741	exon1	c.T56C	p.L19P	.	.	54	5	49	0	.	91
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44579861	44579861	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NPC1L1	NM_001101648	exon2	c.G135A	p.L45L	.	.	122	49	115	0	.	94
NUFIP2	57532	bcgsc.ca	37	17	27613378	27613378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NUFIP2	NM_020772	exon2	c.T1634C	p.V545A	.	.	174	7	171	0	.	138
NUP160	23279	broad.mit.edu	37	11	47826112	47826112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	NUP160	NM_015231	exon21	c.G2665A	p.V889I	.	.	462	8	563	0	.	209
OBSL1	23363	hgsc.bcm.edu	37	2	220432912	220432913	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OBSL1	NM_001173431	exon2	c.1147_1148insC	p.C383fs	.	.	161	8	148	0	.	71
OPTN	10133	bcgsc.ca	37	10	13178834	13178834	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OPTN	NM_001008212	exon15	c.T1702C	p.L568L	.	.	157	8	168	0	.	70
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125329852	125329852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR1L8	NM_001004454	exon1	c.G905T	p.R302M	.	.	102	46	156	0	.	70
OR2A14	135941	hgsc.bcm.edu	37	7	143826732	143826732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR2A14	NM_001001659	exon1	c.T527A	p.F176Y	.	.	306	11	319	0	.	90
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51412172	51412172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR4A5	NM_001005272	exon1	c.T224C	p.I75T	.	.	430	188	482	0	.	92
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	48346884	48346884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR4C3	NM_001004702	exon1	c.T392G	p.F131C	.	.	857	163	992	1	.	69
OR51F2	119694	broad.mit.edu	37	11	4843405	4843405	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR51F2	NM_001004753	exon1	c.A790T	p.I264F	.	.	810	10	818	0	.	70
OR51V1	283111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5221902	5221902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR51V1	NM_001004760	exon1	c.C29T	p.S10L	.	.	121	54	164	0	.	69
OR5B17	219965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58125852	58125852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR5B17	NM_001005489	exon1	c.G691C	p.G231R	.	.	91	43	147	0	.	71
OR8B12	219858	bcgsc.ca	37	11	124413044	124413044	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OR8B12	NM_001005195	exon1	c.T507C	p.A169A	.	.	122	5	145	0	.	70
OTC	5009	broad.mit.edu	37	X	38271193	38271193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	OTC	NM_000531	exon9	c.T946C	p.F316L	.	.	190	7	172	1	.	172
P4HA2	8974	bcgsc.ca	37	5	131546172	131546172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	P4HA2	NM_001017974	exon6	c.A514G	p.M172V	.	.	114	5	110	0	.	68
PABPC3	5042	bcgsc.ca	37	13	25671398	25671398	+	Silent	SNP	C	C	T	rs77306665	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PABPC3	NM_030979	exon1	c.C1062T	p.N354N	.	.	351	47	323	13	C|0.994;T|0.006	72
PANK3	79646	bcgsc.ca	37	5	167993144	167993144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PANK3	NM_024594	exon3	c.A509G	p.E170G	.	.	171	6	195	2	.	91
PAPPA2	60676	bcgsc.ca	37	1	176659271	176659271	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PAPPA2	NM_021936	exon5	c.2138-2A>G	.	.	.	182	6	139	0	.	548
PCCA	5095	bcgsc.ca	37	13	100915016	100915016	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PCCA	NM_001178004	exon10	c.T750C	p.A250A	.	.	161	6	169	0	.	227
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17794745	17794745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PCM1	NM_006197	exon4	c.G199A	p.E67K	.	.	281	130	345	0	.	742
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39928476	39928476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001100399	exon4	c.A348G	p.I116M	.	.	180	79	278	0	.	.
PFAS	5198	ucsc.edu	37	17	8170442	8170442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PFAS	NM_012393	exon24	c.C3064A	p.Q1022K	.	.	48	6	97	7	.	94
PHYHIP	9796	bcgsc.ca	37	8	22079053	22079053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PHYHIP	NM_014759	exon5	c.T806C	p.V269A	.	.	90	4	83	0	.	90
PIBF1	10464	broad.mit.edu	37	13	73366628	73366628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PIBF1	NM_006346	exon3	c.A296G	p.K99R	.	.	318	7	356	0	.	136
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	123474487	123474487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PITPNM2	NM_020845	exon17	c.G2578T	p.D860Y	.	.	20	9	15	0	.	228
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123497236	123497236	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PITPNM2	NM_020845	exon4	c.C339T	p.T113T	.	.	116	48	145	0	.	228
PKHD1	5314	bcgsc.ca	37	6	51908467	51908467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PKHD1	NM_170724	exon26	c.T2777C	p.L926P	.	.	161	5	166	0	.	603
PLA2G12A	81579	bcgsc.ca	37	4	110650925	110650925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PLA2G12A	NM_030821	exon1	c.T41C	p.L14P	.	.	31	4	62	0	.	226
PLD2	5338	bcgsc.ca	37	17	4711569	4711569	+	Missense_Mutation	SNP	G	G	A	rs149200635		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PLD2	NM_001243108	exon4	c.G241A	p.V81M	.	.	147	5	147	0	G|1.000;A|0.000	291
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131825502	131825502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PLXNA4	NM_020911	exon30	c.G5294A	p.S1765N	.	.	165	75	216	2	.	91
PMEPA1	56937	bcgsc.ca	37	20	56227455	56227455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PMEPA1	NM_020182	exon4	c.A518G	p.E173G	.	.	107	5	70	0	.	227
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	56227370	56227370	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PMEPA1	NM_020182	exon4	c.G603A	p.R201R	.	.	34	20	17	0	.	227
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121251856	121251856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	POLQ	NM_199420	exon6	c.A941G	p.E314G	.	.	495	228	523	0	.	664
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38164531	38164531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	POSTN	NM_006475	exon4	c.A419T	p.E140V	.	.	57	23	93	0	.	516
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42636560	42636560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	POU2F2	NM_002698	exon1	c.G4T	p.V2F	.	.	92	42	69	0	.	227
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93076516	93076516	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_153216	exon1	c.G754C	p.D252H	.	.	250	117	257	0	.	.
PP14571	0	bcgsc.ca	37	2	241390158	241390158	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	192	8	173	2	.	.
PRC1	9055	broad.mit.edu	37	15	91519985	91519985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PRC1	NM_199413	exon9	c.C1124T	p.P375L	.	.	305	7	337	0	.	92
PRKDC	5591	broad.mit.edu;bcgsc.ca	37	8	48690318	48690318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PRKDC	.	.	.	.	.	.	289	8	298	0	.	1515
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	54048601	54048601	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PRKG1	NM_006258	exon15	c.C1825T	p.L609L	.	.	135	64	229	0	.	523
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189077	139189077	+	Missense_Mutation	SNP	C	C	T	rs146689892		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PSD2	NM_032289	exon2	c.C52T	p.R18C	.	.	139	63	122	0	C|1.000;T|0.000	91
PTPN14	5784	bcgsc.ca	37	1	214551435	214551435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PTPN14	NM_005401	exon14	c.A2555G	p.K852R	.	.	98	7	183	0	.	290
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112185130	112185130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	PTPN3	NM_002829	exon13	c.C1004T	p.S335L	.	.	169	54	193	0	.	229
RABGEF1	27342	bcgsc.ca	37	7	66260523	66260523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RABGEF1	NM_014504	exon5	c.A539G	p.E180G	.	.	155	6	169	0	.	228
RALGAPA1	253959	ucsc.edu;bcgsc.ca	37	14	36240179	36240179	+	Silent	SNP	T	T	C	rs142052327		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RALGAPA1	NM_194301	exon4	c.A294G	p.R98R	.	.	325	167	476	3	T|1.000;C|0.000	138
RBMXL3	139804	bcgsc.ca	37	X	114425918	114425918	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001145346	exon1	c.T1914C	p.L638L	.	.	122	15	215	8	.	.
RBPMS2	348093	ucsc.edu;bcgsc.ca	37	15	65041670	65041670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RBPMS2	NM_194272	exon4	c.A227G	p.D76G	.	.	39	4	47	0	.	90
RELN	5649	bcgsc.ca	37	7	103136298	103136298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RELN	NM_173054	exon57	c.A9241G	p.R3081G	.	.	141	5	207	0	.	574
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	117198538	117198538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RFX6	NM_173560	exon1	c.G100A	p.G34S	.	.	108	49	63	0	.	93
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	108487515	108487515	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RGPD4	NM_182588	exon20	c.3055delG	p.G1019fs	.	.	317	121	405	0	.	2
RGS6	9628	bcgsc.ca	37	14	72924982	72924982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RGS6	NM_001204424	exon5	c.A239G	p.E80G	.	.	154	6	276	0	.	227
RHPN1	114822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144460480	144460480	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RHPN1	NM_052924	exon5	c.C423T	p.Y141Y	.	.	77	37	59	0	.	67
RIN2	54453	ucsc.edu;bcgsc.ca	37	20	19870240	19870240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RIN2	NM_001242581	exon2	c.G142T	p.G48W	.	.	35	4	64	0	.	660
RIN3	79890	bcgsc.ca	37	14	93118243	93118243	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RIN3	NM_024832	exon6	c.T849C	p.P283P	.	.	65	21	48	4	.	522
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	158603765	158603765	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RNF145	NM_001199380	exon5	c.G586T	p.E196X	.	.	788	317	873	1	.	525
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158603766	158603766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RNF145	NM_001199380	exon5	c.G585T	p.L195F	.	.	785	317	868	2	.	525
RNR2	6053	broad.mit.edu	37	MT	1709	1709	+	RNA	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	189	33	405	0	.	.
RPS6KB1	6198	broad.mit.edu;bcgsc.ca	37	17	57970637	57970637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RPS6KB1	NM_001272043	exon1	c.A92G	p.D31G	.	.	200	11	126	4	.	1041
RUNX2	860	broad.mit.edu	37	6	45459792	45459792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	RUNX2	NM_001024630	exon6	c.G800A	p.R267Q	.	.	1421	10	1059	2	.	417
SALL2	6297	hgsc.bcm.edu	37	14	21991412	21991413	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SALL2	NM_005407	exon2	c.2450_2451insG	p.A817fs	.	.	159	8	178	0	.	92
SCLY	51540	bcgsc.ca	37	2	238990370	238990370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SCLY	NM_016510	exon5	c.T529C	p.S177P	.	.	168	6	194	0	.	92
SDS	10993	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113835135	113835135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SDS	NM_006843	exon6	c.T488C	p.I163T	.	.	163	75	151	1	.	91
SEC23IP	11196	bcgsc.ca	37	10	121678022	121678022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SEC23IP	NM_007190	exon10	c.A1871G	p.Q624R	.	.	178	6	188	0	.	93
SEC24B	10427	bcgsc.ca	37	4	110452553	110452553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SEC24B	NM_006323	exon20	c.A3265G	p.T1089A	.	.	78	4	107	0	.	137
SENP6	26054	broad.mit.edu;bcgsc.ca	37	6	76425177	76425177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SENP6	NM_015571	exon24	c.A3206G	p.E1069G	.	.	375	9	434	1	.	660
SERPINE1	5054	bcgsc.ca	37	7	100771932	100771932	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SERPINE1	NM_000602	exon2	c.A258G	p.G86G	.	.	73	4	67	0	.	652
SERTAD1	29950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40929016	40929016	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SERTAD1	NM_013376	exon2	c.G438T	p.G146G	.	.	40	19	56	0	.	226
SF3B3	23450	bcgsc.ca	37	16	70602358	70602358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SF3B3	NM_012426	exon22	c.A3125G	p.D1042G	.	.	92	4	187	0	.	91
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8185737	8185737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001080826	exon4	c.C2555A	p.T852N	.	.	88	43	72	0	.	.
SH2D4A	63898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	19250999	19250999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SH2D4A	NM_022071	exon9	c.G1219T	p.G407C	.	.	194	111	205	2	.	90
SH3BP2	6452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2814128	2814128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SH3BP2	NM_001145855	exon1	c.G4A	p.A2T	.	.	214	92	212	1	.	514
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51961640	51961640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SIGLEC8	NM_014442	exon1	c.T2A	p.M1K	.	.	124	55	102	0	.	94
SLC16A9	220963	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	61413875	61413875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC16A9	NM_194298	exon5	c.C909A	p.N303K	.	.	191	84	268	0	.	93
SLC25A12	8604	bcgsc.ca	37	2	172669942	172669942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC25A12	NM_003705	exon11	c.T1078C	p.S360P	.	.	216	6	273	1	.	90
SLC26A1	10861	ucsc.edu	37	4	983427	983427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC26A1	NM_022042	exon3	c.T1300C	p.F434L	.	.	53	4	31	0	.	91
SLC43A2	124935	bcgsc.ca	37	17	1494138	1494138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC43A2	NM_152346	exon9	c.A1036G	p.N346D	.	.	77	5	86	0	.	91
SLC43A3	29015	bcgsc.ca	37	11	57184060	57184060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC43A3	NM_017611	exon9	c.T755C	p.L252P	.	.	237	6	249	0	.	90
SLC4A1	6521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42335438	42335438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC4A1	NM_000342	exon11	c.G1198T	p.A400S	.	.	158	53	112	1	.	92
SLC4A8	9498	bcgsc.ca	37	12	51868255	51868255	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC4A8	NM_001258402	exon15	c.T2034C	p.C678C	.	.	136	5	158	0	.	95
SLC6A10P	386757	broad.mit.edu	37	16	32893126	32893126	+	RNA	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	42	23	49	0	.	.
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55736246	55736246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLC6A2	NM_001172501	exon15	c.G1842T	p.W614C	.	.	150	141	298	1	.	526
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101816070	101816070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SLCO6A1	NM_173488	exon2	c.G427C	p.E143Q	.	.	368	169	486	0	.	96
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31487025	31487025	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SMTN	NM_001207018	exon9	c.C1184G	p.S395C	.	.	261	109	247	0	.	154
SNTA1	6640	bcgsc.ca	37	20	32026649	32026649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SNTA1	NM_003098	exon2	c.A494G	p.E165G	.	.	80	5	112	2	.	91
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231079722	231079722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SP110	NM_001185015	exon4	c.C277G	p.Q93E	.	.	232	102	233	0	.	155
SPAG5	10615	bcgsc.ca	37	17	26918861	26918861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPAG5	NM_006461	exon4	c.G1292T	p.R431L	.	.	52	4	79	0	.	90
SPAG8	26206	bcgsc.ca	37	9	35811553	35811553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPAG8	NM_001039592	exon2	c.G490A	p.G164S	.	.	61	4	49	0	.	91
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24797411	24797411	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPATA13	NM_001166271	exon2	c.A344T	p.K115M	.	.	58	27	45	0	.	229
SPATA17	128153	bcgsc.ca	37	1	217947813	217947813	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPATA17	NM_138796	exon7	c.T657C	p.A219A	.	.	57	5	138	0	.	69
SPATA5L1	79029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45713263	45713263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPATA5L1	NM_024063	exon8	c.A2117G	p.E706G	.	.	84	41	99	0	.	94
SPG7	6687	bcgsc.ca	37	16	89603244	89603244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPG7	NM_199367	exon10	c.T1396C	p.C466R	.	.	239	8	257	1	.	226
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	147503432	147503432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPINK5	NM_001127699	exon27	c.2575delG	p.G859fs	.	.	170	93	189	0	.	138
SPIRE1	56907	hgsc.bcm.edu;broad.mit.edu	37	18	12453128	12453128	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SPIRE1	NM_001128626	exon14	c.1786delT	p.C596fs	.	.	232	22	283	0	.	90
SS18L1	26039	hgsc.bcm.edu	37	20	60747838	60747838	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SS18L1	NM_198935	exon9	c.C1017T	p.P339P	.	.	94	4	78	0	.	660
ST14	6768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130058534	130058534	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ST14	NM_021978	exon3	c.C351T	p.A117A	.	.	89	37	62	0	.	94
ST6GALNAC4	27090	bcgsc.ca	37	9	130670732	130670732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ST6GALNAC4	NM_175039	exon6	c.T848C	p.F283S	.	.	97	7	89	0	.	90
STAC	6769	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36526541	36526541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	STAC	NM_003149	exon4	c.A562T	p.M188L	.	.	310	134	352	2	.	94
STAG2	10735	bcgsc.ca	37	X	123179155	123179155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	STAG2	NM_001042749	exon8	c.T604C	p.S202P	.	.	133	5	321	1	.	134
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37814042	37814042	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	STARD3	NM_006804	exon4	c.C312T	p.F104F	.	.	427	254	284	0	.	90
STRADB	55437	broad.mit.edu	37	2	202323513	202323513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	STRADB	NM_001206864	exon3	c.T19C	p.F7L	.	.	303	6	319	1	.	522
SUPT5H	6829	bcgsc.ca	37	19	39960004	39960004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SUPT5H	NM_003169	exon15	c.A1340G	p.K447R	.	.	132	6	124	1	.	94
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152765606	152765606	+	Silent	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SYNE1	NM_033071	exon30	c.T3798A	p.A1266A	.	.	253	120	310	0	.	607
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152765624	152765624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SYNE1	NM_033071	exon30	c.A3780C	p.K1260N	.	.	255	115	329	0	.	607
SYNRG	11276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35880688	35880688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	SYNRG	NM_007247	exon20	c.G3730C	p.E1244Q	.	.	208	71	158	0	.	92
TAS1R1	80835	bcgsc.ca	37	1	6635059	6635059	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TAS1R1	NM_138697	exon3	c.G867T	p.L289L	.	.	60	5	44	0	.	516
TBCA	6902	bcgsc.ca	37	5	77072045	77072045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TBCA	NM_004607	exon1	c.A37G	p.T13A	.	.	108	6	85	0	.	91
TCHH	7062	bcgsc.ca	37	1	152083913	152083913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TCHH	NM_007113	exon3	c.C1780G	p.Q594E	.	.	376	26	237	6	.	72
TEX19	400629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80320463	80320463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TEX19	NM_207459	exon2	c.C437G	p.P146R	.	.	215	68	160	0	.	90
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43813540	43813540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	THADA	NM_001083953	exon7	c.G533T	p.R178I	.	.	475	258	513	1	.	228
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121337034	121337034	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TIAL1	NM_001033925	exon9	c.717delA	p.R239fs	.	.	153	65	155	0	.	91
TICRR	90381	broad.mit.edu	37	15	90143847	90143847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_152259	exon9	c.T2084C	p.L695P	.	.	587	8	641	2	.	.
TIGD7	91151	broad.mit.edu	37	16	3349096	3349096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TIGD7	NM_033208	exon2	c.A1519G	p.M507V	.	.	336	7	431	0	.	90
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7996055	7996055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TIMM44	NM_006351	exon10	c.C1006G	p.L336V	.	.	271	89	370	1	.	91
TINAG	27283	bcgsc.ca	37	6	54173636	54173636	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TINAG	NM_014464	exon1	c.T288C	p.P96P	.	.	265	7	264	0	.	93
TLE6	79816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2989558	2989558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TLE6	NM_001143986	exon13	c.G1019A	p.C340Y	.	.	49	15	67	0	.	91
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35697837	35697837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TLN1	NM_006289	exon57	c.G7577A	p.R2526Q	.	.	550	187	426	0	.	609
TLR7	51284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12905757	12905757	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TLR7	NM_016562	exon3	c.A2130G	p.Q710Q	.	.	94	48	150	3	.	564
TMEM132D	121256	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184497	130184497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TMEM132D	NM_133448	exon2	c.C826A	p.H276N	.	.	369	175	380	4	.	106
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32959819	32959819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TMEM132E	NM_207313	exon7	c.C1309T	p.P437S	.	.	262	74	190	0	.	68
TMEM244	253582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130166922	130166922	+	Missense_Mutation	SNP	C	C	T	rs143949103		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	C6orf191,colon,carcinoma,0	.	NM_001010876	exon2	c.G109A	p.V37M	.	.	263	136	263	0	C|1.000;T|0.000	.
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35841793	35841793	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TMEM8B	.	.	.	.	.	.	210	85	203	0	.	91
TMPRSS12	283471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51237659	51237659	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_182559	exon2	c.A222G	p.Q74Q	.	.	132	63	153	0	.	.
TPO	7173	hgsc.bcm.edu	37	2	1481355	1481355	+	Silent	SNP	G	G	A	rs28910598		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TPO	NM_175719	exon8	c.G1317A	p.K439K	.	.	29	18	2	0	G|0.999;A|0.001	332
TRAF3IP2	10758	bcgsc.ca	37	6	111888891	111888891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TRAF3IP2	NM_147686	exon6	c.A1295G	p.D432G	.	.	92	4	96	0	.	228
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6477958	6477958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TRIM3	NM_001248006	exon6	c.G998T	p.R333L	.	.	76	29	56	0	.	714
TRIM66	9866	bcgsc.ca	37	11	8646673	8646673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TRIM66	NM_014818	exon11	c.A1978G	p.S660G	.	.	121	5	115	0	.	68
TRIP12	9320	bcgsc.ca	37	2	230659952	230659952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TRIP12	NM_004238	exon25	c.T3686C	p.M1229T	.	.	254	7	199	0	.	572
TSPAN13	27075	bcgsc.ca	37	7	16817509	16817509	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TSPAN13	NM_014399	exon4	c.T399C	p.S133S	.	.	145	5	200	1	.	515
TTC39A	22996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51761791	51761791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TTC39A	NM_001144832	exon13	c.G1117T	p.D373Y	.	.	60	19	41	0	.	23
TTC40	54777	broad.mit.edu;bcgsc.ca	37	10	134721983	134721983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001200049	exon22	c.G2913T	p.K971N	.	.	154	5	135	0	.	.
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134660574	134660574	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001200049	exon43	c.A6129T	p.S2043S	.	.	31	11	41	0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179463285	179463285	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TTN	NM_001267550	exon292	c.T57059A	p.V19020E	.	.	380	156	408	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179470150	179470150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TTN	NM_001267550	exon279	c.G53872A	p.D17958N	.	.	181	88	245	0	.	636
TYR	7299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911272	88911272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	TYR	NM_000372	exon1	c.G151A	p.G51S	.	.	98	32	112	0	.	92
ULK1	8408	bcgsc.ca	37	12	132393769	132393769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ULK1	NM_003565	exon8	c.A653G	p.K218R	.	.	57	4	55	0	.	758
ULK4P1	89838	broad.mit.edu	37	15	30875109	30875109	+	RNA	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	3827	354	4991	9	.	.
UNC13C	440279	bcgsc.ca	37	15	54307832	54307832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	UNC13C	NM_001080534	exon1	c.A2732G	p.E911G	.	.	150	5	163	0	.	51
USP24	23358	bcgsc.ca	37	1	55563308	55563308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	USP24	NM_015306	exon48	c.A5678G	p.E1893G	.	.	216	6	246	0	.	521
VPS13B	157680	broad.mit.edu;bcgsc.ca	37	8	100791116	100791116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	VPS13B	NM_017890	exon42	c.T7711C	p.F2571L	.	.	217	7	231	0	.	301
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42293771	42293771	+	Silent	SNP	C	C	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_015058	exon26	c.G3072T	p.G1024G	.	.	312	120	307	0	.	.
WARS2	10352	bcgsc.ca	37	1	119575853	119575853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	WARS2	NM_015836	exon6	c.T764C	p.V255A	.	.	151	8	164	0	.	90
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71130478	71130478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	WBSCR17	NM_022479	exon7	c.G1163T	p.S388I	.	.	188	96	137	0	.	96
WDR41	55255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76785371	76785371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	WDR41	NM_018268	exon2	c.A78T	p.E26D	.	.	350	164	378	0	.	90
WIPF3	644150	hgsc.bcm.edu	37	7	29923639	29923639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	WIPF3	NM_001080529	exon5	c.C529G	p.P177A	.	.	31	14	13	0	.	69
XPO5	57510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43517661	43517661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	XPO5	NM_020750	exon16	c.C1739T	p.S580F	.	.	264	160	181	0	.	271
ZC3H4	23211	bcgsc.ca	37	19	47572581	47572581	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZC3H4	NM_015168	exon14	c.A2166G	p.E722E	.	.	77	5	80	0	.	74
ZCCHC14	23174	bcgsc.ca	37	16	87453420	87453420	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZCCHC14	NM_015144	exon6	c.T603C	p.T201T	.	.	86	5	95	0	.	154
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42734378	42734378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFP106	NM_022473	exon7	c.C3587T	p.S1196L	.	.	241	116	262	0	.	515
ZFP42	132625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	188924570	188924570	+	Silent	SNP	T	T	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFP42	NM_174900	exon4	c.T609A	p.A203A	.	.	102	43	112	1	.	228
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50701265	50701265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFP64	NM_199427	exon9	c.T1769G	p.V590G	.	.	93	52	75	0	.	155
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68274384	68274384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZFYVE26	NM_015346	exon5	c.G617A	p.G206D	.	.	19	13	40	0	.	162
ZIK1	284307	bcgsc.ca	37	19	58096329	58096329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZIK1	NM_001010879	exon2	c.T43C	p.S15P	.	.	150	5	151	1	.	91
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99621227	99621227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZKSCAN1	NM_003439	exon2	c.A98T	p.E33V	.	.	96	36	117	0	.	93
ZKSCAN5	23660	broad.mit.edu;bcgsc.ca	37	7	99129075	99129075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZKSCAN5	NM_145102	exon7	c.A1723G	p.K575E	.	.	111	5	118	0	.	91
ZNF226	7769	bcgsc.ca	37	19	44680261	44680261	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_001032372	exon6	c.T846C	p.C282C	.	.	242	6	260	0	.	.
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44890851	44890851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF285	NM_152354	exon4	c.A1556C	p.K519T	.	.	422	204	501	0	.	94
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90486427	90486427	+	Silent	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF326	NM_182976	exon10	c.A1251G	p.L417L	.	.	501	221	601	0	.	91
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21720692	21720692	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF429	NM_001001415	exon4	c.A1837T	p.K613X	.	.	102	45	90	0	.	516
ZNF440	126070	bcgsc.ca	37	19	11943455	11943455	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF440	NM_152357	exon4	c.C1464T	p.C488C	.	.	126	5	152	0	.	68
ZNF45	7596	bcgsc.ca	37	19	44418190	44418190	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF45	NM_003425	exon10	c.C1398T	p.H466H	.	.	172	9	204	2	.	91
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20308237	20308237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF486	NM_052852	exon4	c.T718C	p.C240R	.	.	93	52	94	0	.	47
ZNF510	22869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99522164	99522164	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF510	NM_014930	exon6	c.A948G	p.K316K	.	.	215	110	297	0	.	90
ZNF525	170958	bcgsc.ca	37	19	53884719	53884719	+	RNA	SNP	A	A	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	93	5	73	0	.	.
ZNF571	51276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38056942	38056942	+	Missense_Mutation	SNP	G	G	A	rs115914028	byfrequency	TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF571	NM_016536	exon4	c.C388T	p.R130W	.	.	366	169	393	0	G|0.998;A|0.002	90
ZNF676	163223	bcgsc.ca	37	19	22363870	22363870	+	Missense_Mutation	SNP	C	C	T	rs201994000		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF676	NM_001001411	exon3	c.G649A	p.V217I	.	.	67	9	76	2	.	90
ZNF681	148213	bcgsc.ca	37	19	23927273	23927273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	NM_138286	exon4	c.A1079G	p.H360R	.	.	95	4	95	0	.	.
ZNF821	55565	bcgsc.ca	37	16	71898135	71898135	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF821	NM_001201556	exon6	c.A323C	p.N108T	.	.	67	4	164	1	.	23
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57176266	57176266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	ZNF835	NM_001005850	exon2	c.301delG	p.E101fs	.	.	82	38	82	0	.	72
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109637346	109637347	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.A923L	.	.	.	.	.	.	.	
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38724364	38724365	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.T288N	.	.	.	.	.	.	.	
IGHV3-42	28427	bcgsc.ca	37	14	106919457	106919458	+	RNA	DNP	CC	CC	TA	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	.	.	.	.	.	.	.	.	
C4orf45	152940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159894436	159894437	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.P31N	.	.	.	.	.	.	.	
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	120022379	120022380	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A10Z-01A-11D-A12Z-10	TCGA-BC-A10Z-11A-11D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6bbfd9b-d3b5-4611-9011-ec67b57f3577	40a34014-00b9-4b89-9e56-3e2e6bc78a52	.	.	.	.	.	p.R297I	.	.	.	.	.	.	.	
