Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADACL3	126767	ucsc.edu;bcgsc.ca	37	1	12785494	12785494	+	Missense_Mutation	SNP	G	G	T	rs7513079	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AADACL3	NM_001103170	exon4	c.G584T	p.C195F	.	.	73	7	77	1	G|0.302;N|0.001	22
AASS	10157	bcgsc.ca	37	7	121756748	121756748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AASS	NM_005763	exon8	c.T833C	p.V278A	.	.	199	6	228	1	.	92
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48559659	48559659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ABCA13	NM_152701	exon53	c.T13820C	p.V4607A	.	.	134	16	179	1	.	521
ABCC4	10257	bcgsc.ca	37	13	95899899	95899899	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ABCC4	NM_005845	exon2	c.A183G	p.Q61Q	.	.	184	6	194	0	.	515
ABCC8	6833	ucsc.edu	37	11	17482085	17482085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ABCC8	NM_000352	exon6	c.T961C	p.F321L	.	.	48	5	59	0	.	91
ABRA	137735	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	107782232	107782232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	ABRA,NS,carcinoma,0	ABRA	NM_139166	exon1	c.C187G	p.P63A	.	.	354	32	573	0	.	92
ACAD11	84129	bcgsc.ca	37	3	132297690	132297690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ACAD11	NM_032169	exon15	c.A1724G	p.N575S	.	.	141	5	212	0	.	91
ACADS	35	bcgsc.ca	37	12	121176083	121176083	+	Missense_Mutation	SNP	G	G	A	rs1799958	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ACADS	NM_000017	exon6	c.G625A	p.G209S	.	.	140	7	177	1	G|0.805;A|0.195	90
ACOX3	8310	bcgsc.ca	37	4	8418168	8418168	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ACOX3	NM_001101667	exon2	c.A81G	p.R27R	.	.	94	4	129	1	.	90
ACSBG1	23205	bcgsc.ca	37	15	78466127	78466127	+	Missense_Mutation	SNP	T	T	C	rs2304824	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ACSBG1	NM_015162	exon13	c.A1897G	p.M633V	.	.	174	12	207	4	T|0.468;C|0.532	91
ADCY6	112	ucsc.edu	37	12	49168798	49168798	+	Missense_Mutation	SNP	C	C	A	rs3730071	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ADCY6	NM_020983	exon12	c.G2020T	p.A674S	.	.	122	11	160	3	C|0.983;A|0.017	90
AGAP2	116986	bcgsc.ca	37	12	58124643	58124643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AGAP2	NM_001122772	exon11	c.T2239C	p.F747L	.	.	56	5	57	0	.	716
AHNAK2	113146	hgsc.bcm.edu;bcgsc.ca	37	14	105419292	105419292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AHNAK2	NM_138420	exon7	c.G2496T	p.K832N	.	.	228	13	323	0	.	47
AKAP13	11214	bcgsc.ca	37	15	86189166	86189166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AKAP13	NM_007200	exon10	c.A4355G	p.D1452G	.	.	78	4	121	0	.	258
AKAP9	10142	bcgsc.ca	37	7	91726606	91726606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AKAP9	NM_005751	exon41	c.A10333G	p.K3445E	.	.	159	5	172	0	.	755
ALMS1	7840	bcgsc.ca	37	2	73717567	73717567	+	Missense_Mutation	SNP	G	G	T	rs2056486	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ALMS1	NM_015120	exon10	c.G8478T	p.R2826S	.	.	117	6	122	1	G|0.663;T|0.337	142
ALPK3	57538	bcgsc.ca	37	15	85401419	85401419	+	Silent	SNP	T	T	C	rs167379	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ALPK3	NM_020778	exon6	c.T4056C	p.G1352G	.	.	83	7	116	3	T|0.149;C|0.851	337
ALPL	249	bcgsc.ca	37	1	21889674	21889674	+	Silent	SNP	C	C	A	rs201342272		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ALPL	NM_000478	exon5	c.C369A	p.A123A	.	.	139	7	206	4	C|0.999;A|0.001	94
AMFR	267	bcgsc.ca	37	16	56435662	56435662	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AMFR	NM_001144	exon8	c.T1068C	p.C356C	.	.	79	5	136	1	.	1009
ANGPTL5	253935	bcgsc.ca	37	11	101778628	101778628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ANGPTL5	NM_178127	exon2	c.T13C	p.S5P	.	.	166	8	190	0	.	91
ANK3	288	bcgsc.ca	37	10	61835056	61835056	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ANK3	NM_020987	exon37	c.G5583A	p.T1861T	.	.	250	8	339	1	.	107
ANKRD20A8P	729171	bcgsc.ca	37	2	95461563	95461563	+	RNA	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	34	4	47	0	.	.
ANKRD33	341405	bcgsc.ca	37	12	52281974	52281974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ANKRD33	NM_182608	exon1	c.A4G	p.K2E	.	.	197	7	292	2	.	90
AP1G1	164	bcgsc.ca	37	16	71773190	71773190	+	Missense_Mutation	SNP	G	G	T	rs904763	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AP1G1	NM_001030007	exon21	c.C2063A	p.P688H	.	.	172	10	251	5	G|0.820;T|0.180	92
APEX1	328	bcgsc.ca	37	14	20924925	20924925	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	APEX1	NM_080648	exon4	c.T345C	p.S115S	.	.	98	6	143	1	.	661
APOL1	8542	bcgsc.ca	37	22	36661330	36661330	+	Missense_Mutation	SNP	G	G	A	rs2239785	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	APOL1	NM_145343	exon7	c.G496A	p.E166K	.	.	204	8	214	2	G|0.329;A|0.671	221
APOL4	80832	bcgsc.ca	37	22	36595389	36595389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	APOL4	.	.	.	.	.	.	57	4	84	1	.	90
APP	351	bcgsc.ca	37	21	27394314	27394314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	APP	NM_001204302	exon6	c.A707G	p.E236G	.	.	446	72	675	21	.	91
ARAP1	116985	hgsc.bcm.edu	37	11	72407643	72407644	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARAP1	NM_001040118	exon23	c.3223_3224insG	p.P1075fs	.	.	54	10	109	0	.	91
ARFGAP2	84364	hgsc.bcm.edu	37	11	47187860	47187861	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARFGAP2	NM_032389	exon15	c.1504_1505insG	p.K502fs	.	.	121	16	210	0	.	69
ARHGAP10	79658	hgsc.bcm.edu;bcgsc.ca	37	4	148886196	148886196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARHGAP10	NM_024605	exon17	c.G1472A	p.R491H	.	.	466	23	561	0	.	229
ARHGAP11A	9824	bcgsc.ca	37	15	32928928	32928928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARHGAP11A	NM_014783	exon12	c.G1954A	p.V652I	.	.	216	7	248	0	.	292
ARHGAP29	9411	bcgsc.ca	37	1	94650997	94650997	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARHGAP29	NM_004815	exon17	c.A1821G	p.S607S	.	.	218	6	321	4	.	296
ARID4A	5926	bcgsc.ca	37	14	58832892	58832892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARID4A	NM_002892	exon22	c.A3467G	p.H1156R	.	.	212	6	242	0	.	231
ARMC4	55130	bcgsc.ca	37	10	28283976	28283976	+	Silent	SNP	T	T	C	rs201617006		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARMC4	NM_018076	exon2	c.A96G	p.K32K	.	.	164	6	235	0	T|1.000;C|0.000	96
ARMCX5	64860	bcgsc.ca	37	X	101858704	101858704	+	Silent	SNP	C	C	T	rs35897621	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARMCX5	NM_022838	exon3	c.C1635T	p.P545P	.	.	340	9	387	4	C|0.986;T|0.014	131
ARSI	340075	bcgsc.ca	37	5	149676954	149676954	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARSI	NM_001012301	exon2	c.T1533C	p.A511A	.	.	116	9	180	1	.	92
ASXL3	80816	bcgsc.ca	37	18	31324830	31324830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ASXL3	NM_030632	exon12	c.A5018G	p.H1673R	.	.	100	5	107	0	.	49
ATP11A	23250	bcgsc.ca	37	13	113481139	113481139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ATP11A	NM_032189	exon12	c.G1155T	p.M385I	.	.	223	8	318	0	.	138
ATP13A2	23400	ucsc.edu;bcgsc.ca	37	1	17314702	17314702	+	Silent	SNP	C	C	T	rs3738815	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ATP13A2	NM_022089	exon25	c.G2790A	p.S930S	.	.	118	12	127	1	C|0.770;T|0.230	93
ATP1A1	476	bcgsc.ca	37	1	116929937	116929937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ATP1A1	NM_001160233	exon4	c.A211G	p.I71V	.	.	173	7	261	0	.	91
ATP2C2	9914	bcgsc.ca	37	16	84438827	84438827	+	Missense_Mutation	SNP	G	G	A	rs78887288	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ATP2C2	NM_014861	exon3	c.G304A	p.V102M	.	.	89	6	131	1	G|0.996;A|0.004	91
AXIN2	8313	bcgsc.ca	37	17	63533946	63533946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AXIN2	NM_004655	exon6	c.A1208G	p.E403G	.	.	69	4	92	0	.	658
BACH1	571	bcgsc.ca	37	21	30698766	30698766	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BACH1	NM_206866	exon3	c.T621C	p.Y207Y	.	.	154	5	167	0	.	92
BAIAP2L1	55971	ucsc.edu;bcgsc.ca	37	7	97922875	97922875	+	Silent	SNP	G	G	A	rs13008	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BAIAP2L1	NM_018842	exon14	c.C1494T	p.R498R	.	.	95	13	117	1	G|0.717;A|0.283	91
BBS5	129880	bcgsc.ca	37	2	170344622	170344622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BBS5	NM_152384	exon5	c.C384A	p.H128Q	.	.	399	13	487	0	.	90
BET3L	100128327	bcgsc.ca	37	6	116821719	116821719	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001139444	exon4	c.A351G	p.E117E	.	.	123	5	178	1	.	.
BMPER	168667	bcgsc.ca	37	7	34118513	34118513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BMPER	NM_133468	exon13	c.T1123C	p.F375L	.	.	130	5	145	0	.	92
BOD1L1	259282	bcgsc.ca	37	4	13602742	13602742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_148894	exon10	c.G5782A	p.E1928K	.	.	136	5	208	0	.	.
BOD1L1	259282	bcgsc.ca	37	4	13603569	13603569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_148894	exon10	c.A4955G	p.D1652G	.	.	195	8	257	0	.	.
BTC	685	bcgsc.ca	37	4	75695347	75695347	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BTC	NM_001729	exon2	c.T84C	p.C28C	.	.	218	6	319	2	.	523
BTN3A3	10384	bcgsc.ca	37	6	26446209	26446209	+	Silent	SNP	C	C	T	rs3846848	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BTN3A3	NM_006994	exon5	c.C711T	p.I237I	.	.	139	8	222	2	C|0.838;T|0.162	90
BUB1	699	bcgsc.ca	37	2	111428135	111428135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	BUB1	NM_004336	exon5	c.A433G	p.T145A	.	.	118	5	127	1	.	1060
C10orf68	79741	bcgsc.ca	37	10	33123774	33123774	+	Silent	SNP	T	T	C	rs11009107	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C10orf68	NM_024688	exon14	c.T1113C	p.N371N	.	.	374	17	436	5	T|0.707;C|0.293	47
C11orf48	79081	bcgsc.ca	37	11	62437226	62437226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C11orf48	NM_024099	exon3	c.A200G	p.E67G	.	.	143	9	230	2	.	90
C12orf65	91574	bcgsc.ca	37	12	123738265	123738265	+	Missense_Mutation	SNP	G	G	A	rs78651634	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C12orf65	NM_001194995	exon2	c.G44A	p.R15Q	.	.	189	10	294	3	G|0.984;A|0.016	90
C15orf27	123591	bcgsc.ca	37	15	76449030	76449030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C15orf27	NM_152335	exon4	c.G313T	p.V105L	.	.	445	36	693	9	.	90
C1orf111	284680	bcgsc.ca	37	1	162344102	162344102	+	Silent	SNP	C	C	T	rs2282397	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C1orf111	NM_182581	exon3	c.G522A	p.R174R	.	.	137	7	228	5	C|0.672;T|0.328	69
C1orf65	164127	hgsc.bcm.edu;bcgsc.ca	37	1	223568584	223568584	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C1orf65	NM_152610	exon1	c.C1767T	p.L589L	.	.	115	9	138	0	.	91
C2orf42	54980	ucsc.edu	37	2	70408657	70408657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C2orf42	NM_017880	exon3	c.C461T	p.S154L	.	.	39	4	39	0	.	90
C5orf20	140947	bcgsc.ca	37	5	134782087	134782087	+	Missense_Mutation	SNP	T	T	C	rs139885262	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_130848	exon1	c.A712G	p.R238G	.	.	110	6	182	1	T|0.998;C|0.002	.
C6orf106	64771	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34574641	34574641	+	Silent	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C6orf106	NM_024294	exon4	c.T552G	p.L184L	.	.	67	8	91	0	.	93
C6orf195	154386	ucsc.edu;bcgsc.ca	37	6	2623930	2623930	+	Missense_Mutation	SNP	G	G	A	rs9503233	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C6orf195	NM_152554	exon3	c.C127T	p.P43S	.	.	55	7	104	1	G|0.875;A|0.125	90
C7orf63	79846	bcgsc.ca	37	7	89897679	89897679	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C7orf63	NM_001039706	exon6	c.A513G	p.P171P	.	.	116	5	111	0	.	91
CACNA1F	778	bcgsc.ca	37	X	49081242	49081242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CACNA1F	NM_005183	exon14	c.A1891G	p.R631G	.	.	114	5	135	1	.	176
CACNA2D1	781	bcgsc.ca	37	7	81689768	81689768	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CACNA2D1	NM_000722	exon10	c.T855C	p.D285D	.	.	82	4	91	0	.	96
CATSPER3	347732	ucsc.edu	37	5	134332143	134332143	+	Missense_Mutation	SNP	G	G	A	rs114447625	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CATSPER3	NM_178019	exon3	c.G433A	p.A145T	.	.	116	12	173	4	G|0.981;A|0.019	91
CCBE1	147372	bcgsc.ca	37	18	57134035	57134035	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCBE1	NM_133459	exon5	c.A489G	p.E163E	.	.	150	5	213	0	.	93
CCDC125	202243	bcgsc.ca	37	5	68616331	68616331	+	Missense_Mutation	SNP	C	C	T	rs10471774	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCDC125	NM_176816	exon1	c.G37A	p.V13M	.	.	223	12	272	3	C|0.688;T|0.312	90
CCDC70	83446	bcgsc.ca	37	13	52439963	52439963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCDC70	NM_031290	exon2	c.T449C	p.L150P	.	.	85	5	108	0	.	90
CCDC80	151887	bcgsc.ca	37	3	112357770	112357770	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCDC80	NM_199511	exon2	c.T983G	p.V328G	.	.	56	16	107	11	.	92
CCNA2	890	bcgsc.ca	37	4	122738828	122738828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCNA2	NM_001237	exon8	c.T1264C	p.S422P	.	.	122	5	131	0	.	848
CCNB1	891	bcgsc.ca	37	5	68471247	68471247	+	Silent	SNP	G	G	A	rs1128761	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCNB1	NM_031966	exon7	c.G966A	p.L322L	.	.	195	11	261	3	G|0.838;A|0.162	650
CCNE2	9134	bcgsc.ca	37	8	95902644	95902644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CCNE2	NM_057749	exon6	c.A452G	p.E151G	.	.	200	6	276	0	.	414
CD1A	909	bcgsc.ca	37	1	158225136	158225136	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CD1A	NM_001763	exon2	c.T321C	p.F107F	.	.	70	4	81	0	.	93
CD300LB	124599	bcgsc.ca	37	17	72521918	72521918	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CD300LB	NM_174892	exon2	c.T450C	p.L150L	.	.	215	7	272	0	.	91
CD6	923	bcgsc.ca	37	11	60785843	60785843	+	Silent	SNP	G	G	A	rs147448427	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CD6	NM_006725	exon12	c.G1920A	p.S640S	.	.	70	4	80	2	G|0.999;A|0.001	227
CDAN1	146059	ucsc.edu	37	15	43022064	43022064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CDAN1	NM_138477	exon16	c.A2282G	p.D761G	.	.	44	4	60	0	.	92
CDC20B	166979	bcgsc.ca	37	5	54410099	54410099	+	Missense_Mutation	SNP	G	G	A	rs444527	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CDC20B	NM_001170402	exon12	c.C1507T	p.R503W	.	.	181	9	296	3	G|0.861;A|0.139	90
CDH11	1009	bcgsc.ca	37	16	65005852	65005852	+	Silent	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CDH11	NM_001797	exon10	c.C1506A	p.T502T	.	.	207	31	319	14	.	852
CDH23	64072	bcgsc.ca	37	10	73405660	73405660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CDH23	NM_052836	exon12	c.G1213A	p.V405I	.	.	95	5	143	1	.	563
CEP192	55125	bcgsc.ca	37	18	13056654	13056654	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CEP192	NM_032142	exon19	c.C4065T	p.N1355N	.	.	118	8	172	0	.	27
CLEC4D	338339	bcgsc.ca	37	12	8673816	8673816	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CLEC4D	NM_080387	exon6	c.T597C	p.C199C	.	.	126	5	176	0	.	90
CLTC	1213	bcgsc.ca	37	17	57733387	57733387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CLTC	NM_004859	exon6	c.A968G	p.Q323R	.	.	83	4	93	0	.	835
CNKSR3	154043	bcgsc.ca	37	6	154727567	154727567	+	Missense_Mutation	SNP	G	G	A	rs146062752		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CNKSR3	NM_173515	exon13	c.C1589T	p.S530F	.	.	152	6	203	3	G|0.999;A|0.001	26
CNOT4	4850	bcgsc.ca	37	7	135047915	135047915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CNOT4	NM_001190850	exon12	c.A1864G	p.S622G	.	.	119	9	168	0	.	90
CNTF	1270	bcgsc.ca	37	11	58391839	58391839	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CNTF	NM_000614	exon2	c.T447C	p.G149G	.	.	110	5	169	0	.	91
COL17A1	1308	hgsc.bcm.edu	37	10	105837253	105837254	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	COL17A1	NM_000494	exon4	c.129_130insC	p.T43fs	.	.	101	10	144	0	.	95
COL18A1	80781	bcgsc.ca	37	21	46911188	46911188	+	Missense_Mutation	SNP	C	C	G	rs79980197	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	COL18A1	NM_030582	exon21	c.C2657G	p.P886R	.	.	123	9	155	0	C|0.938;G|0.062	90
CPA2	1358	bcgsc.ca	37	7	129916532	129916532	+	Missense_Mutation	SNP	T	T	C	rs75139229		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CPA2	NM_001869	exon7	c.T650C	p.L217P	.	.	350	61	486	16	.	91
CPAMD8	27151	bcgsc.ca	37	19	17017878	17017878	+	Missense_Mutation	SNP	G	G	A	rs56408444	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CPAMD8	NM_015692	exon30	c.C4052T	p.A1351V	.	.	85	6	173	3	G|0.803;A|0.197	141
CPOX	1371	bcgsc.ca	37	3	98307696	98307696	+	Missense_Mutation	SNP	T	T	G	rs1131857	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CPOX	NM_000097	exon4	c.A814C	p.N272H	.	.	117	8	193	1	T|0.603;G|0.186	90
CPVL	54504	bcgsc.ca	37	7	29132258	29132258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CPVL	NM_019029	exon6	c.G523A	p.V175I	.	.	103	5	150	0	.	92
CRNN	49860	bcgsc.ca	37	1	152382520	152382520	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CRNN	NM_016190	exon3	c.C1038T	p.H346H	.	.	851	55	1272	14	.	93
CSAD	51380	bcgsc.ca	37	12	53565677	53565677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CSAD	NM_015989	exon7	c.T521C	p.I174T	.	.	55	4	71	0	.	91
CSAG4	100130935	bcgsc.ca	37	X	151896134	151896134	+	RNA	SNP	C	C	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CSAG4	.	.	.	.	.	.	481	72	724	35	.	62
CSMD3	114788	bcgsc.ca	37	8	113933960	113933960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CSMD3	NM_198123	exon10	c.T1529C	p.F510S	.	.	76	4	89	0	.	1132
CTBS	1486	bcgsc.ca	37	1	85018768	85018768	+	RNA	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CTBS	.	.	.	.	.	.	209	7	201	0	.	90
CTHRC1	115908	hgsc.bcm.edu;bcgsc.ca	37	8	104388131	104388131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CTHRC1	NM_138455	exon2	c.T316A	p.Y106N	.	.	143	8	147	0	.	91
CTPS2	56474	bcgsc.ca	37	X	16711575	16711575	+	Silent	SNP	C	C	T	rs138001237	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CTPS2	NM_001144002	exon5	c.G474A	p.P158P	.	.	241	9	357	0	C|1.000;G|0.000	228
CYP2F1	1572	bcgsc.ca	37	19	41630753	41630753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CYP2F1	NM_000774	exon8	c.T1094C	p.M365T	.	.	38	4	64	0	.	90
DAW1	164781	bcgsc.ca	37	2	228758554	228758554	+	Missense_Mutation	SNP	A	A	T	rs1715828	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_178821	exon5	c.A361T	p.T121S	.	.	151	10	185	1	A|0.648;T|0.352	.
DCAF15	90379	bcgsc.ca	37	19	14065231	14065231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DCAF15	NM_138353	exon2	c.A212G	p.E71G	.	.	64	4	88	0	.	90
DCSTAMP	81501	bcgsc.ca;mdanderson.org	37	8	105360964	105360964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001257317	exon2	c.G184A	p.A62T	.	.	323	18	457	0	.	.
DCT	1638	bcgsc.ca	37	13	95121081	95121081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DCT	NM_001129889	exon2	c.A514C	p.T172P	.	.	68	21	122	8	.	94
DENND4A	10260	bcgsc.ca	37	15	66031086	66031086	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DENND4A	NM_001144823	exon6	c.T759C	p.P253P	.	.	217	6	264	1	.	229
DIS3L	115752	bcgsc.ca	37	15	66607400	66607400	+	Missense_Mutation	SNP	G	G	A	rs149827639		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DIS3L	NM_001143688	exon7	c.G841A	p.G281R	.	.	116	6	172	0	G|1.000;A|0.000	92
DISC1	27185	bcgsc.ca	37	1	232144739	232144739	+	Missense_Mutation	SNP	G	G	C	rs115112816	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DISC1	NM_001164537	exon12	c.G2347C	p.E783Q	.	.	145	11	194	2	G|0.994;C|0.006	91
DNAH11	8701	bcgsc.ca	37	7	21628197	21628197	+	Missense_Mutation	SNP	A	A	G	rs12670130	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAH11	.	.	.	.	.	.	153	9	200	0	A|0.834;G|0.166	146
DNAH1	25981	bcgsc.ca	37	3	52356588	52356588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAH1	NM_015512	exon2	c.G130A	p.G44R	.	.	53	4	75	0	.	67
DNAH17	8632	bcgsc.ca	37	17	76486874	76486874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAH17	NM_173628	exon44	c.T6725G	p.V2242G	.	.	90	27	164	9	.	142
DNAH3	55567	bcgsc.ca	37	16	20966362	20966362	+	Missense_Mutation	SNP	T	T	C	rs34051490	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAH3	NM_017539	exon55	c.A10844G	p.Y3615C	.	.	128	7	137	0	T|0.927;C|0.073	167
DNAH5	1767	bcgsc.ca	37	5	13708443	13708443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAH5	NM_001369	exon76	c.T13127G	p.V4376G	.	.	144	30	240	14	.	182
DNAJC3	5611	bcgsc.ca	37	13	96412965	96412965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAJC3	NM_006260	exon7	c.A761G	p.D254G	.	.	94	4	131	0	.	226
DNAJC6	9829	bcgsc.ca	37	1	65858145	65858145	+	Silent	SNP	G	G	A	rs4325172	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNAJC6	NM_001256864	exon12	c.G1500A	p.E500E	.	.	143	9	204	3	G|0.576;A|0.424	272
DNER	92737	bcgsc.ca	37	2	230411698	230411698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNER	NM_139072	exon5	c.T958C	p.S320P	.	.	111	6	170	2	.	524
DNHD1	144132	bcgsc.ca	37	11	6591589	6591589	+	Silent	SNP	A	A	C	rs11603359	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DNHD1	NM_144666	exon41	c.A13068C	p.T4356T	.	.	135	14	154	2	A|0.996;C|0.004	24
DOCK9	23348	bcgsc.ca	37	13	99519701	99519701	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DOCK9	NM_001130049	exon30	c.A3267G	p.K1089K	.	.	172	6	223	0	.	90
DOCK9	23348	bcgsc.ca	37	13	99537227	99537227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DOCK9	NM_001130049	exon21	c.A2383G	p.R795G	.	.	52	5	89	1	.	90
DPCD	25911	bcgsc.ca	37	10	103361088	103361088	+	Silent	SNP	C	C	T	rs7874	bycluster;byfrequency;by1000genomes	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DPCD	NM_015448	exon4	c.C399T	p.N133N	.	.	176	8	239	2	C|0.854;T|0.146	69
DPP4	1803	bcgsc.ca	37	2	162881331	162881331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DPP4	NM_001935	exon11	c.A1006G	p.R336G	.	.	148	5	213	0	.	93
DSPP	1834	bcgsc.ca	37	4	88536620	88536620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DSPP	NM_014208	exon5	c.A2806G	p.S936G	.	.	390	22	538	2	.	90
DSPP	1834	bcgsc.ca	37	4	88537321	88537321	+	Silent	SNP	C	C	T	rs201044279		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DSPP	NM_014208	exon5	c.C3507T	p.S1169S	.	.	147	12	312	8	.	90
DUSP27	92235	bcgsc.ca	37	1	167086745	167086745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DUSP27	NM_001080426	exon3	c.C386T	p.A129V	.	.	134	7	162	0	.	71
DYNC1H1	1778	bcgsc.ca	37	14	102452770	102452770	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	DYNC1H1	NM_001376	exon8	c.A2208G	p.K736K	.	.	70	4	120	1	.	98
EBF4	57593	bcgsc.ca	37	20	2739583	2739583	+	Silent	SNP	T	T	C	rs2073125	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001110514	exon17	c.T1755C	p.F585F	.	.	99	6	150	1	T|0.647;C|0.353	.
ECHDC3	79746	ucsc.edu;bcgsc.ca	37	10	11805354	11805354	+	Silent	SNP	A	A	G	rs12258196	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ECHDC3	NM_024693	exon5	c.A723G	p.A241A	.	.	28	5	56	0	A|0.465;C|0.000;G|0.535	90
ECHDC3	79746	ucsc.edu;bcgsc.ca	37	10	11805357	11805357	+	Silent	SNP	G	G	A	rs10906011	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ECHDC3	NM_024693	exon5	c.G726A	p.S242S	.	.	25	5	56	0	G|0.465;A|0.535	90
EEF1A1	1915	bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EEF1A1	NM_001402	exon7	c.T1077G	p.P359P	.	.	186	14	277	8	C|1.000;|0.000	226
EFCAB6	64800	bcgsc.ca	37	22	43950853	43950853	+	Missense_Mutation	SNP	T	T	G	rs34955597	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EFCAB6	NM_022785	exon27	c.A3544C	p.T1182P	.	.	247	12	349	6	T|0.961;G|0.039	97
EHBP1L1	254102	ucsc.edu	37	11	65351074	65351074	+	Silent	SNP	G	G	A	rs10896018	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EHBP1L1	NM_001099409	exon9	c.G2931A	p.A977A	.	.	127	13	116	3	G|0.706;A|0.294	69
ELMOD3	84173	bcgsc.ca	37	2	85598315	85598315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ELMOD3	NM_001135022	exon9	c.T467C	p.V156A	.	.	69	4	87	0	.	92
ELOVL2	54898	bcgsc.ca	37	6	10990582	10990582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ELOVL2	NM_017770	exon6	c.G599T	p.W200L	.	.	146	5	181	0	.	90
EPHA5	2044	bcgsc.ca	37	4	66218783	66218783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EPHA5	NM_004439	exon13	c.G2275A	p.G759S	.	.	289	8	334	0	.	1430
EPHX1	2052	ucsc.edu	37	1	226019633	226019633	+	Missense_Mutation	SNP	T	T	C	rs1051740	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EPHX1	NM_001136018	exon3	c.T337C	p.Y113H	.	.	85	7	149	2	C|0.290;N|0.000	281
EPPK1	83481	bcgsc.ca	37	8	144941198	144941198	+	Missense_Mutation	SNP	T	T	G	rs79860671	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EPPK1	NM_031308	exon1	c.A6224C	p.Q2075P	.	.	147	13	182	4	T|0.990;G|0.010	25
EPS8L3	79574	bcgsc.ca	37	1	110300441	110300441	+	Missense_Mutation	SNP	G	G	A	rs3818562	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EPS8L3	NM_139053	exon10	c.C880T	p.H294Y	.	.	221	10	265	4	G|0.568;A|0.432	93
EPX	8288	bcgsc.ca	37	17	56272395	56272395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EPX	NM_000502	exon6	c.T665C	p.L222P	.	.	71	4	86	0	.	92
ERAP1	51752	bcgsc.ca	37	5	96117555	96117555	+	Silent	SNP	C	C	T	rs61745685	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ERAP1	NM_001198541	exon16	c.G2289A	p.L763L	.	.	25	4	41	0	C|0.923;T|0.077	70
ERBB2	2064	bcgsc.ca	37	17	37879588	37879588	+	Missense_Mutation	SNP	A	A	G	rs1136201	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ERBB2	NM_004448	exon17	c.A1963G	p.I655V	.	.	211	13	291	3	A|0.845;G|0.155;N|0.000;T|0.000	9959
ETV3	2117	bcgsc.ca	37	1	157094743	157094743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ETV3	NM_001145312	exon5	c.A1429G	p.K477E	.	.	100	5	134	0	.	226
EVC	2121	bcgsc.ca	37	4	5721086	5721086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EVC	NM_153717	exon2	c.A286G	p.K96E	.	.	267	8	293	3	.	92
EVI5	7813	bcgsc.ca	37	1	93131533	93131533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	EVI5	NM_005665	exon11	c.A1307G	p.N436S	.	.	178	7	241	0	.	136
F5	2153	ucsc.edu	37	1	169512027	169512027	+	Silent	SNP	T	T	C	rs6021	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	F5	NM_000130	exon13	c.A2301G	p.S767S	.	.	216	21	228	3	T|0.763;C|0.237	157
F5	2153	ucsc.edu;bcgsc.ca	37	1	169512093	169512093	+	Silent	SNP	A	A	G	rs6017	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	F5	NM_000130	exon13	c.T2235C	p.N745N	.	.	207	19	265	3	A|0.760;G|0.240	157
FAM120B	84498	bcgsc.ca	37	6	170628009	170628009	+	Missense_Mutation	SNP	T	T	G	rs9348266	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FAM120B	NM_032448	exon2	c.T1531G	p.C511G	.	.	155	9	203	2	T|0.851;G|0.149	91
FAM169B	283777	bcgsc.ca	37	15	99023968	99023968	+	Silent	SNP	T	T	G	rs4528551	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_182562	exon4	c.A45C	p.L15L	.	.	154	7	214	0	T|0.666;G|0.334	.
FAM170B	170370	ucsc.edu	37	10	50340304	50340304	+	Missense_Mutation	SNP	C	C	A	rs17773851	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001164484	exon2	c.G206T	p.R69L	.	.	56	6	66	1	C|0.764;A|0.236	.
FAM193A	8603	bcgsc.ca	37	4	2717767	2717767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FAM193A	NM_001256666	exon19	c.A3640G	p.K1214E	.	.	472	12	610	0	.	93
FAM3B	54097	bcgsc.ca	37	21	42729112	42729112	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FAM3B	NM_058186	exon8	c.A696G	p.K232K	.	.	263	9	347	1	.	90
FAM71F1	84691	bcgsc.ca	37	7	128363287	128363287	+	Missense_Mutation	SNP	G	G	A	rs6971091	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FAM71F1	NM_032599	exon4	c.G724A	p.E242K	.	.	98	7	127	0	G|0.836;A|0.164	69
FASN	2194	ucsc.edu;bcgsc.ca	37	17	80039481	80039481	+	Silent	SNP	G	G	A	rs1140616	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FASN	NM_004104	exon37	c.C6402T	p.I2134I	.	.	35	6	47	0	G|0.632;A|0.368	90
FAT2	2196	bcgsc.ca	37	5	150917462	150917462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FAT2	NM_001447	exon11	c.T9085C	p.F3029L	.	.	298	8	386	1	.	96
FCHO2	115548	bcgsc.ca	37	5	72347223	72347223	+	Silent	SNP	A	A	G	rs7712838	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FCHO2	NM_138782	exon12	c.A987G	p.T329T	.	.	246	10	278	3	A|0.673;G|0.327	23
FGD1	2245	bcgsc.ca	37	X	54496743	54496743	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FGD1	NM_004463	exon4	c.T807C	p.A269A	.	.	135	9	197	1	.	231
FILIP1	27145	hgsc.bcm.edu	37	6	76018525	76018526	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FILIP1	NM_015687	exon6	c.3524_3525insG	p.A1175fs	.	.	212	16	455	0	.	94
FLNB	2317	bcgsc.ca	37	3	58134074	58134074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FLNB	NM_001164317	exon36	c.T5963C	p.L1988P	.	.	52	5	92	0	.	593
FRAS1	80144	bcgsc.ca	37	4	79295322	79295322	+	Missense_Mutation	SNP	G	G	A	rs17459809	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FRAS1	NM_001166133	exon25	c.G3068A	p.G1023E	.	.	175	9	242	2	G|0.983;A|0.017	68
FRAS1	80144	bcgsc.ca	37	4	79295378	79295378	+	Missense_Mutation	SNP	G	G	A	rs114077522	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FRAS1	NM_001166133	exon25	c.G3124A	p.A1042T	.	.	116	8	174	0	G|0.980;A|0.020	68
FREM1	158326	bcgsc.ca	37	9	14748401	14748401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FREM1	NM_144966	exon32	c.A5794G	p.T1932A	.	.	214	7	307	1	.	138
FREM1	158326	bcgsc.ca	37	9	14851340	14851340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FREM1	NM_144966	exon7	c.A1094G	p.D365G	.	.	263	8	346	1	.	138
FRG1B	284802	bcgsc.ca	37	20	29625905	29625905	+	RNA	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FRG1B	.	.	.	.	.	.	468	15	524	8	.	22
FRG1B	284802	bcgsc.ca	37	20	29628332	29628332	+	RNA	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FRG1B	NR_003579	exon5	c.633+1G>A	.	.	.	850	37	1101	37	.	22
FRMPD2	143162	bcgsc.ca	37	10	49400833	49400833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FRMPD2	NM_001018071	exon16	c.T2059C	p.F687L	.	.	113	6	134	0	.	153
FSCN1	6624	bcgsc.ca	37	7	5643546	5643546	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FSCN1	NM_003088	exon4	c.C1164T	p.F388F	.	.	59	5	67	0	.	91
FYTTD1	84248	bcgsc.ca	37	3	197482687	197482687	+	Missense_Mutation	SNP	C	C	G	rs7624719	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FYTTD1	NM_001011537	exon2	c.C7G	p.P3A	.	.	184	19	281	2	C|0.920;G|0.080	90
FYTTD1	84248	bcgsc.ca	37	3	197482696	197482696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FYTTD1	NM_001011537	exon2	c.A16T	p.I6F	.	.	204	18	315	2	.	90
FYTTD1	84248	bcgsc.ca	37	3	197482699	197482699	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FYTTD1	NM_001011537	exon2	c.A19T	p.M7L	.	.	209	18	332	3	.	90
GBP4	115361	bcgsc.ca	37	1	89652734	89652734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GBP4	NM_052941	exon9	c.T1462C	p.S488P	.	.	204	6	251	2	.	90
GJB7	375519	hgsc.bcm.edu	37	6	87994213	87994213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GJB7	NM_198568	exon3	c.G418A	p.V140I	.	.	128	16	204	0	.	90
GNPDA2	132789	bcgsc.ca	37	4	44709775	44709775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GNPDA2	NM_138335	exon6	c.T763C	p.F255L	.	.	145	6	172	0	.	91
GPR37	2861	ucsc.edu	37	7	124404371	124404371	+	Silent	SNP	G	G	A	rs61744942	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GPR37	NM_005302	exon1	c.C660T	p.A220A	.	.	70	7	77	1	G|0.888;A|0.112	523
GPRASP1	9737	bcgsc.ca	37	X	101910941	101910941	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GPRASP1	NM_001099411	exon3	c.A2100G	p.E700E	.	.	125	6	167	0	.	131
GPRASP1	9737	bcgsc.ca	37	X	101911493	101911493	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GPRASP1	NM_001099411	exon3	c.A2652G	p.E884E	.	.	80	6	123	0	.	131
GRB10	2887	bcgsc.ca	37	7	50742337	50742337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GRB10	NM_005311	exon3	c.A158G	p.E53G	.	.	56	4	68	0	.	1272
GRID2	2895	bcgsc.ca	37	4	94693603	94693603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GRID2	NM_001510	exon16	c.T2978C	p.L993P	.	.	105	5	117	0	.	159
GRK7	131890	bcgsc.ca	37	3	141535558	141535558	+	Missense_Mutation	SNP	A	A	G	rs36009541	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GRK7	NM_139209	exon4	c.A1328G	p.E443G	.	.	138	6	148	1	A|0.903;G|0.097	522
GTF3C2	2976	bcgsc.ca	37	2	27565716	27565716	+	Silent	SNP	T	T	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GTF3C2	NM_001521	exon4	c.G546C	p.L182L	.	.	102	27	139	9	.	92
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	65440043	65440043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.C928T	p.Q310X	.	.	68	9	80	0	.	90
GUSB	2990	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65439983	65439983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.G988T	p.A330S	.	.	111	14	144	1	.	90
HCFC1	3054	ucsc.edu	37	X	153219665	153219665	+	Silent	SNP	C	C	T	rs2071133	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HCFC1	NM_005334	exon17	c.G4185A	p.A1395A	.	.	76	10	123	2	C|0.604;T|0.396	132
HIF1A	3091	hgsc.bcm.edu;bcgsc.ca	37	14	62207716	62207716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HIF1A	NM_001243084	exon12	c.A1975T	p.I659F	.	.	158	9	235	0	.	1149
HIST1H1B	3009	bcgsc.ca	37	6	27834715	27834715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HIST1H1B	NM_005322	exon1	c.C593A	p.P198Q	.	.	402	23	561	2	.	585
HLA-H	3136	bcgsc.ca	37	6	29855978	29855978	+	RNA	SNP	G	G	T	rs7768484	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	185	8	246	3	G|0.942;T|0.058	.
HLCS	3141	bcgsc.ca	37	21	38139531	38139531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HLCS	NM_000411	exon8	c.A1507G	p.T503A	.	.	77	6	89	1	.	157
HMCN1	83872	bcgsc.ca;mdanderson.org	37	1	186007150	186007150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMCN1	NM_031935	exon37	c.C5834A	p.A1945D	.	.	215	19	234	1	.	113
HMGB3	3149	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	150155724	150155724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMGB3	NM_005342	exon4	c.A414T	p.E138D	.	.	158	11	219	0	.	226
HNRNPF	3185	bcgsc.ca	37	10	43882430	43882430	+	Silent	SNP	G	G	A	rs151043426	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HNRNPF	NM_001098204	exon4	c.C903T	p.T301T	.	.	60	7	119	1	G|0.997;A|0.003	22
HPS5	11234	bcgsc.ca	37	11	18309464	18309464	+	Missense_Mutation	SNP	G	G	A	rs144875223		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HPS5	NM_181507	exon17	c.C2537T	p.P846L	.	.	158	8	216	1	G|0.998;A|0.002	133
IFITM3	10410	ucsc.edu	37	11	320772	320772	+	Silent	SNP	A	A	G	rs56190331		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFITM3	NM_021034	exon1	c.T42C	p.S14S	.	.	43	4	69	3	.	519
IFITM3	10410	ucsc.edu	37	11	320805	320805	+	Missense_Mutation	SNP	G	G	T	rs1136853	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFITM3	NM_021034	exon1	c.C9A	p.H3Q	.	.	37	4	64	2	G|0.965;T|0.035	519
IFT57	55081	hgsc.bcm.edu;bcgsc.ca	37	3	107937444	107937444	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT57	NM_018010	exon3	c.A432G	p.V144V	.	.	307	13	393	0	.	227
IFT74	80173	bcgsc.ca	37	9	27047285	27047285	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT74	NM_001099222	exon15	c.T1122C	p.T374T	.	.	121	5	137	0	.	515
IFT88	8100	hgsc.bcm.edu	37	13	21219024	21219025	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT88	NM_175605	exon22	c.1903_1904insT	p.L635fs	.	.	279	17	300	0	.	91
IKBKAP	8518	bcgsc.ca	37	9	111688824	111688824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IKBKAP	NM_003640	exon5	c.C445T	p.H149Y	.	.	82	4	83	0	.	318
IL17C	27189	bcgsc.ca	37	16	88706330	88706330	+	Silent	SNP	C	C	T	rs11076688	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IL17C	NM_013278	exon3	c.C444T	p.S148S	.	.	39	5	33	0	C|0.932;T|0.068	90
IL18	3606	bcgsc.ca	37	11	112014328	112014328	+	Silent	SNP	G	G	A	rs5744290	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IL18	NM_001562	exon6	c.C573T	p.N191N	.	.	118	5	154	1	G|0.993;A|0.007	90
INPP4B	8821	bcgsc.ca	37	4	143324094	143324094	+	Silent	SNP	G	G	A	rs1982966	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	INPP4B	NM_003866	exon8	c.C369T	p.D123D	.	.	87	7	107	0	G|0.743;A|0.257	228
INSC	387755	bcgsc.ca	37	11	15243059	15243059	+	Missense_Mutation	SNP	G	G	A	rs17507577	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	INSC	NM_001031853	exon8	c.G997A	p.D333N	.	.	114	10	170	12	G|0.946;A|0.054	94
INS-IGF2	723961	ucsc.edu	37	11	2169014	2169014	+	Missense_Mutation	SNP	A	A	G	rs10770125	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	INS-IGF2	NM_001042376	exon4	c.T431C	p.L144P	.	.	97	8	124	2	A|0.652;G|0.348	22
INTS4L2	644619	bcgsc.ca	37	7	65157766	65157766	+	RNA	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	670	30	899	13	.	.
INTS7	25896	ucsc.edu	37	1	212120045	212120045	+	Silent	SNP	G	G	A	rs41275374	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	INTS7	NM_015434	exon18	c.C2319T	p.H773H	.	.	105	13	107	2	G|0.977;A|0.023	90
ITGA3	3675	hgsc.bcm.edu	37	17	48156866	48156867	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ITGA3	NM_005501	exon21	c.2651_2652insC	p.G884fs	.	.	72	10	105	0	.	229
ITGB6	3694	bcgsc.ca	37	2	161029226	161029226	+	Missense_Mutation	SNP	G	G	C	rs149747755	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ITGB6	NM_000888	exon6	c.C775G	p.R259G	.	.	95	22	146	8	G|1.000;A|0.000	227
ITIH3	3699	bcgsc.ca	37	3	52835155	52835155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ITIH3	NM_002217	exon11	c.A1376G	p.Q459R	.	.	49	4	63	0	.	93
ITPR2	3709	bcgsc.ca	37	12	26733062	26733062	+	Silent	SNP	T	T	C	rs2230375	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ITPR2	NM_002223	exon33	c.A4407G	p.K1469K	.	.	121	6	151	1	T|0.774;C|0.226	542
JAG2	3714	bcgsc.ca	37	14	105615648	105615648	+	Missense_Mutation	SNP	C	C	T	rs9972231	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	JAG2,NS,carcinoma,0	JAG2	NM_002226	exon13	c.G1612A	p.D538N	.	.	70	5	69	0	C|0.899;T|0.101	846
KANK2	25959	bcgsc.ca	37	19	11304081	11304081	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KANK2	NM_015493	exon2	c.G675A	p.Q225Q	.	.	59	4	89	0	.	68
KCNB2	9312	bcgsc.ca	37	8	73850150	73850150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KCNB2	NM_004770	exon3	c.T2560C	p.S854P	.	.	103	5	148	1	.	158
KCNH5	27133	bcgsc.ca	37	14	63175105	63175105	+	Silent	SNP	C	C	T	rs36004050	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KCNH5	NM_139318	exon11	c.G2088A	p.V696V	.	.	112	8	196	1	C|0.976;T|0.024	98
KCNK10	54207	bcgsc.ca	37	14	88693880	88693880	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KCNK10	NM_021161	exon5	c.506-1G>T	.	.	.	75	4	77	0	.	95
KCNMA1	3778	bcgsc.ca	37	10	78832952	78832952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KCNMA1	NM_002247	exon14	c.T1652C	p.L551P	.	.	144	5	206	0	.	93
KIAA1456	57604	bcgsc.ca	37	8	12879062	12879062	+	Silent	SNP	T	T	C	rs503550	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIAA1456	NM_020844	exon5	c.T874C	p.L292L	.	.	140	8	185	2	T|0.267;C|0.733	90
KIAA1456	57604	bcgsc.ca	37	8	12879099	12879099	+	Missense_Mutation	SNP	G	G	A	rs63744861	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIAA1456	NM_020844	exon5	c.G911A	p.G304E	.	.	134	5	198	0	G|0.238;A|0.762	90
KIAA1671	85379	bcgsc.ca	37	22	25586744	25586744	+	Silent	SNP	T	T	G	rs2330986	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIAA1671	NM_001145206	exon10	c.T5418G	p.V1806V	.	.	130	9	168	3	T|0.952;G|0.048	69
KIAA1804	0	ucsc.edu	37	1	233515413	233515413	+	Silent	SNP	G	G	A	rs1402815	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIAA1804	NM_032435	exon9	c.G2661A	p.P887P	.	.	51	6	72	2	G|0.748;A|0.252	523
KIF15	56992	bcgsc.ca	37	3	44854614	44854614	+	Silent	SNP	T	T	G	rs76971569	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIF15	NM_020242	exon19	c.T2325G	p.L775L	.	.	172	15	191	2	T|0.987;G|0.013	91
KIF16B	55614	bcgsc.ca	37	20	16316592	16316592	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIF16B	NM_024704	exon24	c.A3690G	p.T1230T	.	.	139	6	180	0	.	291
KIF21A	55605	bcgsc.ca	37	12	39724630	39724630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIF21A	NM_001173464	exon23	c.A3237T	p.Q1079H	.	.	837	30	1154	0	.	97
KIF21A	55605	bcgsc.ca	37	12	39760868	39760868	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIF21A	NM_001173463	exon5	c.T699C	p.H233H	.	.	160	5	223	0	.	97
KIF2B	84643	bcgsc.ca	37	17	51901600	51901600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KIF2B	NM_032559	exon1	c.C1206A	p.N402K	.	.	330	11	504	0	.	98
KLHL20	27252	bcgsc.ca	37	1	173703205	173703205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KLHL20	NM_014458	exon3	c.C377T	p.A126V	.	.	168	6	181	0	.	187
KRT38	8687	bcgsc.ca	37	17	39597104	39597104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KRT38	NM_006771	exon1	c.T70C	p.S24P	.	.	148	6	290	4	.	92
KRT77	374454	bcgsc.ca	37	12	53088484	53088484	+	Missense_Mutation	SNP	C	C	T	rs10783528	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KRT77	NM_175078	exon5	c.G1006A	p.D336N	.	.	109	5	173	1	C|0.676;T|0.324	187
KRTAP19-8	728299	hgsc.bcm.edu	37	21	32410712	32410713	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KRTAP19-8	NM_001099219	exon1	c.51_52insG	p.G17fs	.	.	133	10	216	0	.	1
KRTAP5-10	387273	bcgsc.ca	37	11	71276891	71276891	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KRTAP5-10	NM_001012710	exon1	c.C258T	p.S86S	.	.	81	8	159	1	.	91
L1TD1	54596	bcgsc.ca	37	1	62672579	62672579	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	L1TD1	NM_001164835	exon4	c.A279G	p.S93S	.	.	156	6	194	1	.	92
LAMB1	3912	bcgsc.ca	37	7	107626516	107626516	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LAMB1	NM_002291	exon7	c.T627C	p.A209A	.	.	154	5	129	0	.	97
LAMB4	22798	bcgsc.ca	37	7	107738948	107738948	+	Silent	SNP	G	G	A	rs451252	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LAMB4	NM_007356	exon11	c.C1260T	p.A420A	.	.	139	13	160	2	G|0.674;A|0.326	140
LAMC1	3915	bcgsc.ca	37	1	182993025	182993025	+	Silent	SNP	C	C	T	rs10911194	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LAMC1	NM_002293	exon1	c.C174T	p.A58A	.	.	65	6	69	0	C|0.512;T|0.488	252
LAMC1	3915	ucsc.edu;bcgsc.ca	37	1	183094547	183094547	+	Missense_Mutation	SNP	T	T	C	rs20558	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LAMC1	NM_002293	exon15	c.T2663C	p.L888P	.	.	189	18	224	2	T|0.489;C|0.511	252
LAMC2	3918	bcgsc.ca	37	1	183187603	183187603	+	Silent	SNP	C	C	T	rs1129723	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LAMC2	NM_005562	exon4	c.C483T	p.V161V	.	.	105	9	136	2	C|0.734;T|0.266	93
LAMC2	3918	bcgsc.ca	37	1	183192304	183192304	+	Silent	SNP	T	T	G	rs1047980	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LAMC2	NM_005562	exon7	c.T798G	p.G266G	.	.	134	13	178	3	T|0.692;G|0.308	93
LAMP5	24141	bcgsc.ca	37	20	9496958	9496958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_012261	exon4	c.A425G	p.Q142R	.	.	53	6	73	0	.	.
LCN1	3933	bcgsc.ca	37	9	138416991	138416991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LCN1	NM_001252618	exon6	c.A515G	p.Q172R	.	.	134	5	208	0	.	90
LDLR	3949	bcgsc.ca	37	19	11227600	11227600	+	Missense_Mutation	SNP	A	A	G	rs140644832		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LDLR	NM_001195798	exon12	c.A1771G	p.N591D	.	.	165	6	245	2	A|1.000;G|0.000	94
LEMD1	93273	ucsc.edu	37	1	205353492	205353492	+	Missense_Mutation	SNP	A	A	C	rs2274702	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LEMD1	NM_001199050	exon5	c.T271G	p.W91G	.	.	155	25	194	3	A|0.920;C|0.080	90
LINC00471	151477	bcgsc.ca	37	2	232373893	232373893	+	RNA	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	458	14	564	0	.	.
LINGO1	84894	bcgsc.ca	37	15	77906599	77906599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LINGO1	NM_032808	exon2	c.C1650A	p.F550L	.	.	157	10	189	0	.	24
LMBRD1	55788	bcgsc.ca	37	6	70451715	70451715	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LMBRD1	NM_018368	exon6	c.A528G	p.K176K	.	.	88	6	102	0	.	91
LMTK2	22853	ucsc.edu	37	7	97822210	97822210	+	Silent	SNP	G	G	A	rs3801294	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LMTK2	NM_014916	exon11	c.G2433A	p.P811P	.	.	49	5	72	2	G|0.650;A|0.350	1381
LOC100996307	0	bcgsc.ca	37	19	43135982	43135982	+	RNA	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	18	4	27	0	.	.
LOC285441	0	bcgsc.ca	37	4	187250383	187250383	+	RNA	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	76	4	76	0	.	.
LOXL4	84171	bcgsc.ca	37	10	100013438	100013438	+	Silent	SNP	C	C	T	rs17524355	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LOXL4	NM_032211	exon11	c.G1707A	p.A569A	.	.	83	4	102	0	C|0.826;T|0.174	230
LPA	4018	bcgsc.ca	37	6	161006140	161006140	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LPA	NM_005577	exon27	c.T4227C	p.C1409C	.	.	178	6	290	2	.	74
LRCH3	84859	bcgsc.ca	37	3	197518339	197518339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRCH3	NM_032773	exon1	c.C190G	p.L64V	.	.	67	5	109	1	.	91
LRP1B	53353	bcgsc.ca	37	2	140990839	140990839	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRP1B	NM_018557	exon91	c.T13716C	p.C4572C	.	.	139	6	179	0	.	311
LRRC31	79782	bcgsc.ca	37	3	169572694	169572694	+	Missense_Mutation	SNP	C	C	T	rs41273581	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRRC31	NM_024727	exon6	c.T898A	p.S300T	.	.	86	6	144	1	C|0.994;T|0.006	93
LRRC8A	56262	bcgsc.ca	37	9	131669967	131669967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRRC8A	NM_001127244	exon3	c.A524G	p.E175G	.	.	73	4	119	0	.	90
LRRC8C	84230	ucsc.edu	37	1	90179532	90179532	+	Missense_Mutation	SNP	A	A	G	rs12032393	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRRC8C	NM_032270	exon3	c.A1403G	p.N468S	.	.	47	7	67	1	A|0.869;G|0.131	97
LRRCC1	85444	bcgsc.ca	37	8	86057622	86057622	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRRCC1	NM_033402	exon19	c.2977-2A>T	.	.	.	438	27	463	2	.	90
LRRN2	10446	ucsc.edu	37	1	204587569	204587569	+	Missense_Mutation	SNP	G	G	C	rs3747631	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LRRN2	NM_006338	exon3	c.C1552G	p.L518V	.	.	90	9	140	2	G|0.818;C|0.182	514
LTA4H	4048	bcgsc.ca	37	12	96396766	96396766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LTA4H	NM_000895	exon18	c.A1690G	p.R564G	.	.	241	9	319	1	.	91
LY6D	8581	bcgsc.ca	37	8	143867905	143867905	+	Missense_Mutation	SNP	C	C	T	rs2572925	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	LY6D	NM_003695	exon1	c.G28A	p.A10T	.	.	95	9	109	0	C|0.637;T|0.363	90
MAP1LC3A	84557	bcgsc.ca	37	20	33137791	33137791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MAP1LC3A	NM_181509	exon2	c.A10G	p.R4G	.	.	75	5	129	0	.	90
MAP2	4133	bcgsc.ca	37	2	210545517	210545517	+	Silent	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MAP2	NM_001039538	exon7	c.A420C	p.S140S	.	.	288	31	399	10	.	591
MAPK15	225689	bcgsc.ca	37	8	144801243	144801243	+	Silent	SNP	C	C	T	rs12678428	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MAPK15	NM_139021	exon6	c.C498T	p.P166P	.	.	81	9	62	0	C|0.530;T|0.470	1378
MCM3AP	8888	bcgsc.ca	37	21	47703649	47703649	+	Silent	SNP	G	G	A	rs11702450	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MCM3AP	NM_003906	exon2	c.C1323T	p.N441N	.	.	162	13	225	1	G|0.699;A|0.301	291
MDH1	4190	bcgsc.ca	37	2	63824634	63824634	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MDH1	NM_001199111	exon4	c.T355A	p.L119I	.	.	363	11	502	0	.	537
MESDC2	23184	bcgsc.ca	37	15	81271615	81271615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MESDC2	NM_015154	exon3	c.A650G	p.K217R	.	.	67	4	78	0	.	90
MIR146A	406938	bcgsc.ca	37	5	159912513	159912513	+	RNA	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	50	4	88	0	.	.
MMP13	4322	bcgsc.ca	37	11	102826037	102826037	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MMP13	NM_002427	exon2	c.T306C	p.G102G	.	.	170	7	212	1	.	229
MRGPRX1	259249	bcgsc.ca	37	11	18955861	18955861	+	Silent	SNP	C	C	T	rs72890000	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MRGPRX1	NM_147199	exon1	c.G471A	p.E157E	.	.	130	8	196	1	C|0.905;T|0.095	92
MRGPRX3	117195	bcgsc.ca	37	11	18158811	18158811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MRGPRX3	NM_054031	exon3	c.C62A	p.T21N	.	.	155	9	218	1	.	92
MROH5	389690	bcgsc.ca	37	8	142446923	142446923	+	RNA	SNP	C	C	T	rs11782383	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	117	9	150	2	C|0.695;T|0.305	.
MRPL35	51318	bcgsc.ca	37	2	86434329	86434329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MRPL35	NM_016622	exon3	c.T257C	p.V86A	.	.	111	12	149	1	.	90
MRVI1	10335	ucsc.edu	37	11	10650329	10650329	+	Silent	SNP	C	C	T	rs2278125	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MRVI1	NM_001206880	exon6	c.G621A	p.R207R	.	.	63	7	75	1	C|0.408;T|0.592	25
MSH5	4439	hgsc.bcm.edu	37	6	31729664	31729665	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MSH5	NM_172165	exon23	c.2254_2255insC	p.A752fs	.	.	169	11	224	0	.	661
MTF2	22823	bcgsc.ca	37	1	93592826	93592826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MTF2	NM_001164392	exon10	c.T959C	p.V320A	.	.	133	5	153	0	.	92
MYB	4602	bcgsc.ca	37	6	135515588	135515588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MYB	NM_001161656	exon8	c.A938G	p.Q313R	.	.	145	5	143	0	.	838
MYH11	4629	bcgsc.ca	37	16	15818141	15818141	+	Silent	SNP	A	A	C	rs2075511	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MYH11	NM_001040114	exon32	c.T4263G	p.A1421A	.	.	253	8	324	4	A|0.589;C|0.411	666
MYH14	79784	ucsc.edu	37	19	50755911	50755911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MYH14	NM_001077186	exon16	c.A1846G	p.N616D	.	.	42	4	74	0	.	23
MYH4	4622	bcgsc.ca	37	17	10348354	10348354	+	Missense_Mutation	SNP	T	T	C	rs2277649	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MYH4	NM_017533	exon37	c.A5405G	p.D1802G	.	.	207	12	313	4	T|0.644;C|0.356	102
NASP	4678	bcgsc.ca	37	1	46078882	46078882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NASP	NM_002482	exon7	c.A1468G	p.T490A	.	.	110	5	171	0	.	91
NAV3	89795	bcgsc.ca	37	12	78573358	78573358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NAV3	NM_014903	exon28	c.A5347G	p.S1783G	.	.	100	5	114	0	.	279
NCL	4691	hgsc.bcm.edu	37	2	232325420	232325420	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCL	NM_005381	exon4	c.T771A	p.D257E	.	.	380	41	465	0	.	230
NCL	4691	hgsc.bcm.edu;mdanderson.org	37	2	232325423	232325423	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCL	NM_005381	exon4	c.T768A	p.D256E	.	.	385	35	474	0	.	230
NCOR1	9611	bcgsc.ca	37	17	16068463	16068463	+	Missense_Mutation	SNP	C	C	T	rs74453660		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCOR1	NM_001190440	exon4	c.G448A	p.G150R	.	.	665	20	864	9	.	229
ND6	0	bcgsc.ca	37	MT	14470	14470	+	Silent	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	ENST00000361681	exon1	c.A204T	p.G68G	.	.	413	53	836	4	.	.
NEB	4703	bcgsc.ca	37	2	152350289	152350289	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NEB	NM_001271208	exon176	c.G24777A	p.S8259S	.	.	157	5	186	0	.	145
NEDD1	121441	bcgsc.ca	37	12	97334223	97334223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NEDD1	NM_001135175	exon9	c.A1175G	p.K392R	.	.	232	6	281	0	.	90
NEDD9	4739	bcgsc.ca	37	6	11185533	11185533	+	Silent	SNP	G	G	A	rs1050775	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NEDD9	NM_001142393	exon8	c.C2367T	p.T789T	.	.	350	22	519	6	G|0.457;A|0.543	226
NFASC	23114	ucsc.edu;bcgsc.ca	37	1	204978704	204978704	+	Silent	SNP	G	G	A	rs55678495	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NFASC	NM_001005388	exon28	c.G3309A	p.A1103A	.	.	53	6	60	0	G|0.892;A|0.108	139
NFKBIZ	64332	bcgsc.ca	37	3	101573931	101573931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NFKBIZ	NM_031419	exon7	c.C1469G	p.A490G	.	.	301	43	388	7	.	92
NID1	4811	hgsc.bcm.edu	37	1	236205343	236205343	+	Silent	SNP	C	C	T	rs146353651	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NID1	NM_002508	exon4	c.G1002A	p.P334P	.	.	101	5	129	0	C|0.996;T|0.004	154
NKTR	4820	bcgsc.ca	37	3	42680666	42680666	+	Missense_Mutation	SNP	A	A	G	rs139121502		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NKTR	NM_005385	exon13	c.A3470G	p.D1157G	.	.	78	5	88	0	A|1.000;G|0.000	93
NLRP12	91662	bcgsc.ca	37	19	54313408	54313408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NLRP12	NM_144687	exon3	c.A1505G	p.N502S	.	.	161	6	186	0	.	211
NME8	51314	bcgsc.ca	37	7	37924829	37924829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_016616	exon14	c.G1222A	p.E408K	.	.	317	39	384	9	.	.
NMNAT2	23057	bcgsc.ca	37	1	183247699	183247699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NMNAT2	NM_015039	exon8	c.A640G	p.N214D	.	.	161	10	233	0	.	187
NOVA1	4857	bcgsc.ca	37	14	27064729	27064729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NOVA1	NM_006489	exon2	c.T167C	p.I56T	.	.	219	6	336	3	.	229
NPAS2	4862	bcgsc.ca	37	2	101554247	101554247	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NPAS2	NM_002518	exon5	c.A306G	p.T102T	.	.	232	8	298	0	.	94
NR5A2	2494	ucsc.edu	37	1	200143281	200143281	+	Silent	SNP	C	C	T	rs1060060	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NR5A2	NM_205860	exon8	c.C1569T	p.C523C	.	.	153	16	165	3	T|0.281;G|0.119	227
NRCAM	4897	bcgsc.ca	37	7	107834528	107834528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NRCAM	NM_001037132	exon14	c.A1718G	p.H573R	.	.	227	6	287	0	.	156
NRG3	10718	bcgsc.ca	37	10	84745097	84745097	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NRG3	NM_001010848	exon9	c.T1827C	p.V609V	.	.	81	6	98	0	.	522
NRXN3	9369	bcgsc.ca	37	14	79175593	79175593	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NRXN3	NM_004796	exon4	c.C136T	p.L46L	.	.	242	7	302	0	.	587
NT5C3A	0	bcgsc.ca	37	7	33102227	33102227	+	Missense_Mutation	SNP	A	A	G	rs72555707	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001002010	exon1	c.T106C	p.F36L	.	.	109	10	120	1	A|0.987;G|0.013	.
NT5DC1	221294	bcgsc.ca	37	6	116558180	116558180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NT5DC1	NM_152729	exon9	c.A854G	p.Y285C	.	.	112	5	180	0	.	226
NXF5	55998	bcgsc.ca	37	X	101095994	101095994	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NXF5	NM_032946	exon8	c.C474T	p.F158F	.	.	852	28	1196	1	.	204
NYNRIN	57523	bcgsc.ca	37	14	24885016	24885016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NYNRIN	NM_025081	exon9	c.A4061C	p.H1354P	.	.	150	30	287	16	.	3
OBSCN	84033	hgsc.bcm.edu;bcgsc.ca	37	1	228495849	228495849	+	Silent	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OBSCN	NM_001271223	exon58	c.G15375T	p.A5125A	.	.	129	9	168	0	.	403
OFD1	8481	bcgsc.ca	37	X	13753387	13753387	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OFD1	NM_003611	exon2	c.T33C	p.A11A	.	.	186	6	235	0	.	108
OLFML2A	169611	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	127561615	127561615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OLFML2A	NM_182487	exon4	c.C514A	p.R172S	.	.	125	10	159	0	.	68
OR13J1	392309	bcgsc.ca	37	9	35870225	35870225	+	Silent	SNP	G	G	A	rs72727089	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR13J1	NM_001004487	exon1	c.C174T	p.P58P	.	.	122	7	228	5	G|0.779;A|0.221	68
OR1D5	8386	bcgsc.ca	37	17	2966191	2966191	+	Silent	SNP	G	G	A	rs61752194	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_014566	exon1	c.C711T	p.T237T	.	.	297	11	441	7	G|0.625;A|0.375	.
OR2T11	127077	mdanderson.org	37	1	248790167	248790167	+	Missense_Mutation	SNP	A	A	G	rs34397542	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR2T11	NM_001001964	exon1	c.T263C	p.I88T	.	.	67	20	74	2	A|0.900;G|0.100	69
OR2T11	127077	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248790199	248790199	+	Silent	SNP	T	T	C	rs34674180	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR2T11	NM_001001964	exon1	c.A231G	p.K77K	.	.	83	23	79	1	T|0.902;C|0.098	69
OR2T2	401992	bcgsc.ca	37	1	248616361	248616361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR2T2	NM_001004136	exon1	c.C263G	p.S88C	.	.	1162	69	1538	19	.	23
OR2T4	127074	bcgsc.ca	37	1	248524891	248524891	+	Silent	SNP	C	C	T	rs200949727		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR2T4	NM_001004696	exon1	c.C9T	p.N3N	.	.	754	24	996	17	C|1.000;T|0.000	68
OR4A5	81318	bcgsc.ca	37	11	51412327	51412327	+	Missense_Mutation	SNP	T	T	A	rs56302591	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR4A5	NM_001005272	exon1	c.A69T	p.K23N	.	.	162	12	197	3	T|0.908;A|0.092	92
OR4C46	119749	bcgsc.ca	37	11	51516000	51516000	+	Missense_Mutation	SNP	C	C	T	rs11246607	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR4C46	NM_001004703	exon1	c.C719T	p.S240F	.	.	403	17	526	8	C|0.541;T|0.459	69
OR4C46	119749	bcgsc.ca	37	11	51516036	51516036	+	Missense_Mutation	SNP	G	G	A	rs11246608	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR4C46	NM_001004703	exon1	c.G755A	p.C252Y	.	.	397	15	498	9	G|0.535;A|0.465	69
OR4K17	390436	bcgsc.ca	37	14	20586526	20586526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR4K17	NM_001004715	exon1	c.A961G	p.R321G	.	.	154	5	175	0	.	71
OR51F1	256892	bcgsc.ca	37	11	4790471	4790471	+	Missense_Mutation	SNP	G	G	A	rs1030723	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR51F1	NM_001004752	exon1	c.C677T	p.S226F	.	.	137	10	241	3	G|0.798;A|0.202	70
OR51F1	256892	bcgsc.ca	37	11	4790474	4790474	+	Missense_Mutation	SNP	T	T	C	rs11033793	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR51F1	NM_001004752	exon1	c.A674G	p.H225R	.	.	146	11	252	3	T|0.810;C|0.190	70
OR51F1	256892	bcgsc.ca	37	11	4790758	4790758	+	Silent	SNP	G	G	A	rs11033796	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR51F1	NM_001004752	exon1	c.C390T	p.D130D	.	.	137	6	159	1	G|0.690;A|0.310	70
OR51F1	256892	bcgsc.ca	37	11	4790881	4790881	+	Silent	SNP	A	A	G	rs111736749	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR51F1	NM_001004752	exon1	c.T267C	p.F89F	.	.	138	6	173	2	A|0.903;G|0.097	70
OR52W1	120787	bcgsc.ca	37	11	6221235	6221235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OR52W1	NM_001005178	exon1	c.T782C	p.L261P	.	.	155	5	257	3	.	68
ORM1	5004	hgsc.bcm.edu;bcgsc.ca	37	9	117086341	117086341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ORM1	NM_000607	exon3	c.C301T	p.R101W	.	.	240	10	286	0	.	90
OTOA	146183	bcgsc.ca	37	16	21712338	21712338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OTOA	NM_144672	exon10	c.A970C	p.T324P	.	.	48	19	98	9	.	92
P2RY13	53829	bcgsc.ca	37	3	151046774	151046774	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	P2RY13	NM_176894	exon2	c.A70T	p.T24S	.	.	185	10	236	0	.	503
PASK	23178	bcgsc.ca	37	2	242065850	242065850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PASK	NM_015148	exon10	c.A2480G	p.E827G	.	.	78	6	114	0	.	536
PCLO	27445	bcgsc.ca	37	7	82585390	82585390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PCLO	NM_014510	exon5	c.C4879T	p.H1627Y	.	.	293	12	299	0	.	29
PCLO	27445	ucsc.edu;bcgsc.ca	37	7	82387960	82387960	+	Silent	SNP	G	G	A	rs62465931	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PCLO	NM_033026	exon25	c.C15360T	p.D5120D	.	.	99	15	108	0	G|0.987;A|0.013	29
PCNT	5116	bcgsc.ca	37	21	47754597	47754597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PCNT	NM_006031	exon3	c.T554C	p.F185S	.	.	189	6	274	2	.	141
PCNX	22990	bcgsc.ca	37	14	71517470	71517470	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PCNX	NM_014982	exon23	c.A4440G	p.A1480A	.	.	164	6	231	0	.	91
PDE2A	5138	bcgsc.ca	37	11	72291947	72291947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PDE2A	NM_002599	exon24	c.T2116C	p.S706P	.	.	71	5	116	0	.	156
PDE6C	5146	bcgsc.ca	37	10	95372490	95372490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PDE6C	NM_006204	exon1	c.A8G	p.E3G	.	.	127	6	166	0	.	94
PENK	5179	bcgsc.ca	37	8	57358432	57358432	+	Silent	SNP	G	G	A	rs3808633	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PENK	NM_001135690	exon3	c.C81T	p.S27S	.	.	82	7	107	0	G|0.909;A|0.091	517
PEX14	5195	bcgsc.ca	37	1	10689924	10689924	+	Silent	SNP	C	C	T	rs2128414	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PEX14	NM_004565	exon9	c.C1014T	p.D338D	.	.	83	6	105	1	C|0.947;T|0.053	90
PIGO	84720	ucsc.edu;bcgsc.ca	37	9	35093208	35093208	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIGO	NM_152850	exon7	c.940-2A>G	.	.	.	42	4	47	0	.	290
PIK3C2G	5288	bcgsc.ca	37	12	18534797	18534797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIK3C2G	NM_004570	exon13	c.T1855C	p.S619P	.	.	117	6	137	0	.	1312
PIKFYVE	200576	bcgsc.ca	37	2	209190730	209190730	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIKFYVE	NM_015040	exon20	c.C3195T	p.P1065P	.	.	119	5	176	0	.	583
PINX1	54984	bcgsc.ca	37	8	10692273	10692273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PINX1	NM_017884	exon2	c.A32G	p.Q11R	.	.	81	4	101	0	.	726
PIP5K1B	8395	bcgsc.ca	37	9	71538262	71538262	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIP5K1B	NM_003558	exon12	c.T1161C	p.F387F	.	.	179	6	144	0	.	240
PIP5K1C	23396	bcgsc.ca	37	19	3653412	3653412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PIP5K1C	NM_001195733	exon7	c.A797G	p.K266R	.	.	72	4	129	0	.	267
PITRM1	10531	bcgsc.ca	37	10	3201169	3201169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PITRM1	NM_001242307	exon10	c.A1073G	p.N358S	.	.	309	8	394	0	.	91
PKHD1	5314	bcgsc.ca	37	6	51890648	51890648	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PKHD1	NM_170724	exon32	c.A3960G	p.G1320G	.	.	109	8	155	1	.	603
PKP1	5317	bcgsc.ca	37	1	201282573	201282573	+	Missense_Mutation	SNP	A	A	G	rs35507614	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PKP1	NM_001005337	exon3	c.A586G	p.I196V	.	.	180	23	285	5	A|0.886;G|0.114	92
PLAA	9373	bcgsc.ca	37	9	26907983	26907983	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PLAA	NM_001031689	exon13	c.A1671G	p.E557E	.	.	166	7	244	0	.	514
PLCH2	9651	bcgsc.ca	37	1	2422654	2422654	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PLCH2	NM_014638	exon11	c.A1539G	p.V513V	.	.	62	4	92	0	.	229
PLXNB3	5365	bcgsc.ca	37	X	153035604	153035604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PLXNB3	NM_001163257	exon9	c.G1756A	p.A586T	.	.	118	7	130	0	.	130
PLXND1	23129	bcgsc.ca	37	3	129281776	129281776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PLXND1	NM_015103	exon27	c.T4679C	p.V1560A	.	.	74	6	95	0	.	90
PODXL	5420	bcgsc.ca	37	7	131196062	131196062	+	Silent	SNP	C	C	T	rs17744792	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PODXL	NM_001018111	exon2	c.G231A	p.S77S	.	.	190	14	200	2	C|0.871;T|0.129	136
POPDC2	64091	ucsc.edu	37	3	119379186	119379186	+	Missense_Mutation	SNP	C	C	T	rs4688023	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	POPDC2	NM_022135	exon1	c.G85A	p.V29I	.	.	113	13	152	3	C|0.615;T|0.385	90
PPIL2	23759	bcgsc.ca	37	22	22039199	22039199	+	Silent	SNP	C	C	T	rs861833	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PPIL2	NM_014337	exon10	c.C711T	p.N237N	.	.	51	7	85	0	C|0.901;T|0.099	92
PPP1R15B	84919	bcgsc.ca	37	1	204379292	204379292	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PPP1R15B	NM_032833	exon1	c.T1248C	p.S416S	.	.	86	4	89	2	.	652
PPP2R3B	28227	ucsc.edu;bcgsc.ca	37	X	299360	299360	+	Missense_Mutation	SNP	G	G	A	rs1133520	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PPP2R3B	NM_013239	exon12	c.C1556T	p.A519V	.	.	101	11	125	1	G|0.755;A|0.245	136
PRB2	653247	bcgsc.ca	37	12	11546616	11546616	+	Silent	SNP	A	A	G	rs199923047		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRB2	NM_006248	exon3	c.T396C	p.P132P	.	.	416	36	673	39	A|0.998;G|0.002	22
PROX1	5629	bcgsc.ca	37	1	214184916	214184916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PROX1	NM_001270616	exon4	c.A1886G	p.E629G	.	.	219	7	271	0	.	654
PRPF31	26121	ucsc.edu;bcgsc.ca	37	19	54631459	54631459	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRPF31	NM_015629	exon10	c.A957G	p.E319E	.	.	46	4	76	1	.	91
PRSS21	10942	bcgsc.ca	37	16	2870998	2870998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRSS21	NM_144957	exon5	c.T593C	p.I198T	.	.	59	4	103	0	.	92
PRTG	283659	bcgsc.ca	37	15	55912391	55912391	+	Missense_Mutation	SNP	G	G	A	rs79244725		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRTG	NM_173814	exon20	c.C3272T	p.S1091F	.	.	204	10	292	2	G|0.999;A|0.001	92
PRUNE2	158471	bcgsc.ca	37	9	79229512	79229512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRUNE2	NM_015225	exon19	c.G9241T	p.D3081Y	.	.	93	5	110	0	.	157
PRUNE2	158471	bcgsc.ca	37	9	79267527	79267527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRUNE2	NM_015225	exon11	c.T8429C	p.L2810P	.	.	213	6	251	0	.	157
PRUNE2	158471	bcgsc.ca	37	9	79322715	79322715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PRUNE2	NM_015225	exon8	c.G4475T	p.G1492V	.	.	83	5	114	1	.	157
PSPH	5723	bcgsc.ca	37	7	56088780	56088780	+	Silent	SNP	G	G	A	rs75497420	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PSPH	NM_004577	exon4	c.C126T	p.D42D	.	.	229	13	327	6	G|0.984;A|0.016	92
PTPN14	5784	bcgsc.ca	37	1	214557735	214557735	+	Missense_Mutation	SNP	G	G	T	rs144475962	byfrequency;alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PTPN14	NM_005401	exon13	c.C1463A	p.P488Q	.	.	329	23	392	1	G|1.000;A|0.000	290
PTPRB	5787	bcgsc.ca	37	12	70988488	70988488	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PTPRB	NM_001109754	exon6	c.A1275G	p.K425K	.	.	88	4	104	1	.	226
PTPRB	5787	bcgsc.ca	37	12	71029509	71029509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PTPRB	NM_001109754	exon2	c.G393A	p.M131I	.	.	154	6	209	0	.	226
PTPRZ1	5803	bcgsc.ca;mdanderson.org	37	7	121684477	121684477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	PTPRZ1	NM_002851	exon23	c.A5939G	p.E1980G	.	.	404	22	446	1	.	699
RAB3GAP1	22930	bcgsc.ca	37	2	135893288	135893288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RAB3GAP1	NM_001172435	exon17	c.A1709G	p.E570G	.	.	211	7	197	1	.	92
RAD54B	25788	bcgsc.ca	37	8	95444854	95444854	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RAD54B	NM_001205262	exon4	c.T335G	p.V112G	.	.	176	74	214	17	.	539
RALGAPB	57148	bcgsc.ca	37	20	37146510	37146510	+	Missense_Mutation	SNP	A	A	C	rs41276946	byfrequency;alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RALGAPB	NM_020336	exon9	c.A1284C	p.E428D	.	.	197	36	273	7	A|0.995;G|0.005	92
RAP1A	5906	bcgsc.ca	37	1	112251820	112251820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RAP1A	NM_001010935	exon8	c.A518G	p.K173R	.	.	363	8	501	2	.	847
RBL2	5934	ucsc.edu;bcgsc.ca	37	16	53503943	53503943	+	Silent	SNP	C	C	G	rs11540358	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RBL2	NM_005611	exon15	c.C2091G	p.R697R	.	.	120	12	165	1	C|0.706;G|0.294	841
RELA	5970	bcgsc.ca	37	11	65422448	65422448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RELA	NM_021975	exon11	c.T1057C	p.S353P	.	.	226	8	295	0	.	872
RELN	5649	bcgsc.ca	37	7	103130336	103130336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RELN	NM_173054	exon60	c.T9616C	p.F3206L	.	.	80	5	93	0	.	574
RFX6	222546	bcgsc.ca	37	6	117245943	117245943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RFX6	NM_173560	exon15	c.T1667C	p.M556T	.	.	155	6	181	0	.	93
RGS11	8786	bcgsc.ca	37	16	320759	320759	+	Missense_Mutation	SNP	C	C	T	rs9806942	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RGS11	NM_183337	exon14	c.G1051A	p.V351M	.	.	65	6	96	1	C|0.894;T|0.106	227
RIMBP3	85376	bcgsc.ca	37	22	20458542	20458542	+	Silent	SNP	C	C	T	rs861801	bycluster;byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_015672	exon1	c.G2760A	p.A920A	.	.	759	28	987	16	C|0.500;T|0.500	.
RLTPR	146206	bcgsc.ca	37	16	67683037	67683037	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RLTPR	NM_001013838	exon18	c.A1650G	p.R550R	.	.	64	4	128	0	.	67
RORB	6096	bcgsc.ca	37	9	77257404	77257404	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RORB	NM_006914	exon4	c.C310T	p.L104L	.	.	65	5	73	0	.	229
RPL22	6146	bcgsc.ca	37	1	6253019	6253019	+	Silent	SNP	G	G	T	rs200101942	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RPL22	NM_000983	exon3	c.C213A	p.T71T	.	.	121	5	133	2	G|0.999;A|0.001	650
RPRD2	23248	ucsc.edu	37	1	150443609	150443609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RPRD2	NM_015203	exon11	c.C2185T	p.R729W	.	.	65	9	93	1	.	23
RRP12	23223	bcgsc.ca	37	10	99116903	99116903	+	Missense_Mutation	SNP	C	C	T	rs1048445	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RRP12	NM_015179	exon34	c.G3842A	p.R1281Q	.	.	112	8	142	1	C|0.753;T|0.247	92
RRP7A	27341	ucsc.edu	37	22	42912029	42912029	+	Silent	SNP	G	G	T	rs3201001	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RRP7A	NM_015703	exon3	c.C330A	p.P110P	.	.	54	15	82	4	G|0.748;T|0.252	91
RYK	6259	bcgsc.ca	37	3	133921590	133921590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	RYK	.	.	.	.	.	.	260	7	298	0	.	1379
S1PR2	9294	bcgsc.ca	37	19	10334989	10334989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	S1PR2	NM_004230	exon2	c.T593C	p.F198S	.	.	46	5	66	0	.	522
SBF1	6305	bcgsc.ca	37	22	50895020	50895020	+	Silent	SNP	C	C	T	rs5771001		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SBF1	NM_002972	exon30	c.G3987A	p.A1329A	.	.	71	6	70	0	C|0.661;T|0.339	90
SCD5	79966	bcgsc.ca	37	4	83582064	83582064	+	Missense_Mutation	SNP	G	G	T	rs3733228	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SCD5	NM_024906	exon4	c.C736A	p.L246M	.	.	125	8	149	1	G|0.729;T|0.271	91
SCYL3	57147	bcgsc.ca	37	1	169823859	169823859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SCYL3	NM_181093	exon13	c.A1721G	p.E574G	.	.	156	6	197	0	.	361
SDF4	51150	bcgsc.ca	37	1	1163964	1163964	+	Silent	SNP	G	G	A	rs78548753	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SDF4	NM_016547	exon2	c.C210T	p.D70D	.	.	193	6	238	3	A|0.021;C|0.000;G|0.979	154
SEC22B	9554	bcgsc.ca	37	1	145112468	145112468	+	RNA	SNP	A	A	C	rs200742331	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	.	.	.	316	10	382	3	A|0.989;C|0.011	.
SEC31B	25956	bcgsc.ca	37	10	102255172	102255172	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SEC31B	NM_015490	exon19	c.T2442C	p.S814S	.	.	113	5	162	0	.	91
SEMA3C	10512	bcgsc.ca	37	7	80546075	80546075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SEMA3C	NM_006379	exon2	c.T23C	p.V8A	.	.	135	5	144	0	.	515
SEMA6C	10500	bcgsc.ca	37	1	151112483	151112483	+	Missense_Mutation	SNP	T	T	C	rs75185260	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SEMA6C	NM_001178061	exon4	c.A202G	p.T68A	.	.	106	11	145	1	T|0.953;C|0.047	92
SEMA6D	80031	bcgsc.ca	37	15	48056958	48056958	+	Silent	SNP	C	C	T	rs3743281	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SEMA6D	NM_153617	exon12	c.C1221T	p.A407A	.	.	108	5	135	0	C|0.814;T|0.186	138
SEPT3	55964	bcgsc.ca	37	22	42383220	42383220	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SEPT3	NM_019106	exon4	c.A342G	p.E114E	.	.	108	6	131	0	.	68
SETBP1	26040	bcgsc.ca	37	18	42530862	42530862	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SETBP1	NM_015559	exon4	c.A1557G	p.P519P	.	.	133	5	175	0	.	155
SGPL1	8879	bcgsc.ca	37	10	72637066	72637066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SGPL1	NM_003901	exon15	c.A1681G	p.M561V	.	.	130	5	179	0	.	226
SGTB	54557	hgsc.bcm.edu;bcgsc.ca	37	5	64976616	64976616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SGTB	NM_019072	exon7	c.C485T	p.A162V	.	.	136	9	182	0	.	90
SH2D1B	117157	ucsc.edu	37	1	162367103	162367103	+	Missense_Mutation	SNP	G	G	T	rs34001279	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SH2D1B	NM_053282	exon4	c.C366A	p.N122K	.	.	112	18	158	10	G|0.907;T|0.093	91
SH3GL2	6456	bcgsc.ca	37	9	17787430	17787430	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SH3GL2	NM_003026	exon5	c.A384G	p.K128K	.	.	72	4	105	0	.	91
SH3PXD2A	9644	bcgsc.ca	37	10	105361653	105361653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SH3PXD2A	NM_014631	exon14	c.T3238C	p.W1080R	.	.	87	4	118	0	.	226
SH3RF3	344558	ucsc.edu	37	2	110049067	110049067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SH3RF3	NM_001099289	exon6	c.C1514T	p.A505V	.	.	59	7	77	1	.	24
SHKBP1	92799	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41089577	41089577	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SHKBP1	NM_138392	exon12	c.G1119A	p.A373A	.	.	105	11	174	0	.	92
SHROOM3	57619	bcgsc.ca	37	4	77660373	77660373	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SHROOM3	NM_020859	exon5	c.T1047C	p.N349N	.	.	60	4	90	0	.	93
SIGLEC10	89790	bcgsc.ca	37	19	51917008	51917008	+	Silent	SNP	C	C	T	rs61741687	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SIGLEC10	NM_033130	exon10	c.G1779A	p.T593T	.	.	153	9	160	1	C|0.998;T|0.002	91
SIX5	147912	bcgsc.ca	37	19	46268778	46268778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SIX5	NM_175875	exon3	c.A2201G	p.E734G	.	.	97	8	112	0	.	91
SLC13A1	6561	bcgsc.ca	37	7	122809234	122809234	+	Missense_Mutation	SNP	T	T	C	rs2140516	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SLC13A1	NM_022444	exon4	c.A521G	p.N174S	.	.	246	10	284	3	A|0.003;C|0.297	92
SLC24A4	123041	bcgsc.ca	37	14	92792259	92792259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SLC24A4	NM_153646	exon2	c.A178G	p.R60G	.	.	54	4	65	1	.	93
SLC25A20	788	bcgsc.ca	37	3	48929444	48929444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SLC25A20	NM_000387	exon2	c.T167C	p.F56S	.	.	234	8	268	1	.	90
SLC39A11	201266	ucsc.edu	37	17	70943990	70943990	+	Missense_Mutation	SNP	T	T	C	rs2466517	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SLC39A11	NM_001159770	exon5	c.A331G	p.T111A	.	.	97	14	125	2	T|0.106;C|0.894	91
SLC4A11	83959	bcgsc.ca	37	20	3209652	3209652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SLC4A11	NM_001174090	exon17	c.T2153G	p.V718G	.	.	60	17	85	9	.	91
SMARCC1	6599	hgsc.bcm.edu	37	3	47629720	47629721	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SMARCC1	NM_003074	exon28	c.3297_3298insC	p.P1099fs	.	.	116	12	151	0	.	228
SMC5	23137	bcgsc.ca	37	9	72879353	72879353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SMC5	NM_015110	exon2	c.G319T	p.A107S	.	.	270	13	297	1	.	229
SMCO2	0	bcgsc.ca	37	12	27641434	27641434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001145010	exon6	c.A554G	p.K185R	.	.	63	4	80	0	.	.
SMG5	23381	ucsc.edu	37	1	156233189	156233189	+	Silent	SNP	C	C	T	rs2273833	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SMG5	NM_015327	exon13	c.G2028A	p.A676A	.	.	123	18	180	5	C|0.798;T|0.202	231
SNX19	399979	bcgsc.ca	37	11	130776551	130776551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SNX19	NM_014758	exon6	c.A2231G	p.K744R	.	.	193	6	256	0	.	229
SON	6651	hgsc.bcm.edu;bcgsc.ca	37	21	34925206	34925206	+	Silent	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SON	NM_032195	exon3	c.T3669A	p.P1223P	.	.	237	14	282	0	.	97
SP8	221833	bcgsc.ca	37	7	20825290	20825290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SP8	NM_182700	exon2	c.A146C	p.H49P	.	.	54	18	83	2	.	91
SPAG9	9043	bcgsc.ca	37	17	49067132	49067132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPAG9	NM_001130528	exon21	c.G2719A	p.D907N	.	.	426	16	602	0	.	659
SPG21	51324	bcgsc.ca	37	15	65261628	65261628	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPG21	NM_001127889	exon7	c.T633C	p.P211P	.	.	104	5	126	0	.	90
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	68	39	105	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	66	20	130	4	A|0.010;C|0.001;T|0.988	45
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	158651408	158651408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPTA1	NM_003126	exon4	c.C440T	p.T147I	.	.	224	16	281	0	.	142
SPTA1	6708	mdanderson.org	37	1	158597507	158597507	+	Missense_Mutation	SNP	G	G	C	rs3737515	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPTA1	NM_003126	exon40	c.C5572G	p.L1858V	.	.	141	19	139	3	G|0.758;C|0.242	142
SS18	6760	bcgsc.ca	37	18	23658123	23658123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SS18	NM_001007559	exon3	c.T148C	p.Y50H	.	.	110	5	173	0	.	1968
STAG3	10734	bcgsc.ca	37	7	99795720	99795720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STAG3	NM_012447	exon12	c.T1175G	p.V392G	.	.	799	80	1166	32	.	543
STIM2	57620	bcgsc.ca	37	4	27000938	27000938	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STIM2	NM_001169118	exon5	c.A594G	p.A198A	.	.	164	6	235	0	.	91
STK17A	9263	bcgsc.ca	37	7	43659260	43659260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STK17A	NM_004760	exon4	c.T629C	p.L210P	.	.	228	7	249	0	.	335
STK17B	9262	bcgsc.ca	37	2	197005992	197005992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STK17B	NM_004226	exon6	c.A637G	p.T213A	.	.	88	5	121	0	.	334
STK40	83931	bcgsc.ca	37	1	36807481	36807481	+	Missense_Mutation	SNP	C	C	T	rs3795498	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STK40	NM_032017	exon12	c.G1183A	p.A395T	.	.	134	10	177	3	C|0.795;T|0.205	83
STON1-GTF2A1L	286749	bcgsc.ca	37	2	48873978	48873978	+	Missense_Mutation	SNP	A	A	G	rs10432667	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STON1-GTF2A1L	NM_001198593	exon8	c.A2887G	p.N963D	.	.	263	11	388	5	A|0.779;G|0.221	27
STRA6	64220	bcgsc.ca	37	15	74472456	74472456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	STRA6	NM_001199042	exon19	c.A2086G	p.T696A	.	.	108	5	124	1	.	90
SUCO	51430	bcgsc.ca	37	1	172558559	172558559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_014283	exon18	c.T2318C	p.I773T	.	.	137	5	131	0	.	.
SUMF2	25870	hgsc.bcm.edu	37	7	56144554	56144555	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SUMF2	NM_015411	exon6	c.620_621insC	p.F207fs	.	.	138	8	207	0	.	92
SUOX	6821	ucsc.edu	37	12	56398454	56398454	+	Silent	SNP	G	G	C	rs773115	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SUOX	NM_000456	exon6	c.G1281C	p.S427S	.	.	125	16	184	4	G|0.400;C|0.600	90
SVEP1	79987	bcgsc.ca	37	9	113132204	113132204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SVEP1	NM_153366	exon47	c.A10693G	p.R3565G	.	.	113	5	143	0	.	75
SYF2	25949	bcgsc.ca	37	1	25554719	25554719	+	Missense_Mutation	SNP	G	G	A	rs35324907	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SYF2	NM_015484	exon4	c.C266T	p.A89V	.	.	145	7	160	1	G|0.982;A|0.018	90
TAF4B	6875	bcgsc.ca	37	18	23906979	23906979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TAF4B	NM_005640	exon12	c.G2134A	p.A712T	.	.	77	4	71	0	.	71
TBK1	29110	bcgsc.ca	37	12	64882345	64882345	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TBK1	NM_013254	exon12	c.A1419G	p.R473R	.	.	377	19	452	2	.	1459
TCHH	7062	bcgsc.ca	37	1	152082400	152082400	+	Missense_Mutation	SNP	G	G	C	rs201862078		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TCHH	NM_007113	exon3	c.C3293G	p.P1098R	.	.	277	23	383	9	.	72
TDO2	6999	bcgsc.ca	37	4	156832659	156832659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TDO2	NM_005651	exon7	c.A629G	p.E210G	.	.	377	40	408	5	.	514
TECRL	253017	bcgsc.ca	37	4	65240898	65240898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TECRL	NM_001010874	exon2	c.A278G	p.H93R	.	.	342	10	318	0	.	90
TENM2	57451	hgsc.bcm.edu	37	5	167645298	167645299	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001122679	exon23	c.4375_4376insT	p.L1459fs	.	.	115	12	174	0	.	.
TENM4	26011	bcgsc.ca	37	11	78372536	78372536	+	Silent	SNP	G	G	A	rs2277277	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001098816	exon33	c.C7509T	p.L2503L	.	.	444	15	730	7	G|0.593;A|0.407	.
TIMD4	91937	bcgsc.ca	37	5	156390190	156390190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TIMD4	NM_138379	exon1	c.T20C	p.I7T	.	.	146	6	219	0	.	92
TLN1	7094	hgsc.bcm.edu	37	9	35725253	35725254	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TLN1	NM_006289	exon3	c.196_197insG	p.K66fs	.	.	133	9	175	0	.	609
TLN2	83660	bcgsc.ca	37	15	63127983	63127983	+	Silent	SNP	G	G	A	rs8038919	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TLN2	NM_015059	exon53	c.G7176A	p.Q2392Q	.	.	204	12	249	3	G|0.912;A|0.088	573
TM9SF3	56889	bcgsc.ca	37	10	98307695	98307695	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TM9SF3	NM_020123	exon8	c.A1011G	p.P337P	.	.	58	4	94	0	.	90
TMCO2	127391	bcgsc.ca	37	1	40717144	40717144	+	Missense_Mutation	SNP	C	C	G	rs80094747	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TMCO2	NM_001008740	exon2	c.C427G	p.L143V	.	.	117	7	205	2	C|0.986;G|0.014	91
TMCO6	55374	ucsc.edu;bcgsc.ca	37	5	140021482	140021482	+	Silent	SNP	C	C	T	rs11554680	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TMCO6	NM_018502	exon4	c.C342T	p.V114V	.	.	62	7	108	1	C|0.758;T|0.242	90
TMEM248	55069	bcgsc.ca	37	7	66406906	66406906	+	Silent	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_017994	exon2	c.T54A	p.P18P	.	.	144	10	162	2	.	.
TMPRSS9	360200	ucsc.edu;bcgsc.ca	37	19	2418031	2418031	+	Silent	SNP	C	C	T	rs11084939	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TMPRSS9	NM_182973	exon12	c.C1947T	p.S649S	.	.	68	10	88	1	C|0.876;T|0.124	91
TMTC2	160335	bcgsc.ca	37	12	83424579	83424579	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TMTC2	NM_152588	exon9	c.T2073C	p.G691G	.	.	178	7	255	2	.	92
TMTC4	84899	bcgsc.ca	37	13	101277859	101277859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TMTC4	NM_032813	exon15	c.A1766G	p.E589G	.	.	112	7	157	0	.	155
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57077359	57077360	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TNKS1BP1	NM_033396	exon6	c.2826_2827insG	p.S942fs	.	.	118	11	158	0	.	91
TNRC6C	57690	ucsc.edu;bcgsc.ca	37	17	76060811	76060811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TNRC6C	NM_018996	exon5	c.G2404A	p.G802S	.	.	39	4	71	0	.	24
TOLLIP	54472	ucsc.edu;bcgsc.ca	37	11	1309869	1309869	+	Silent	SNP	G	G	A	rs116939577	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TOLLIP	NM_019009	exon4	c.C504T	p.L168L	.	.	44	5	87	0	G|0.994;A|0.006	90
TPCN2	219931	bcgsc.ca	37	11	68840397	68840397	+	Silent	SNP	T	T	C	rs1466221	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TPCN2	NM_139075	exon13	c.T1158C	p.Y386Y	.	.	129	8	168	0	T|0.561;C|0.439	90
TPCN2	219931	bcgsc.ca	37	11	68840412	68840412	+	Silent	SNP	C	C	G	rs1466220	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TPCN2	NM_139075	exon13	c.C1173G	p.L391L	.	.	129	8	179	0	C|0.498;G|0.502	90
TRIM39	56658	bcgsc.ca	37	6	30297529	30297529	+	Silent	SNP	T	T	C	rs2057727	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TRIM39	NM_172016	exon3	c.T435C	p.D145D	.	.	138	7	185	2	T|0.696;C|0.304	161
TRPC4	7223	bcgsc.ca	37	13	38211474	38211474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TRPC4	NM_003306	exon11	c.A2515G	p.R839G	.	.	180	6	204	1	.	159
TSHZ1	10194	bcgsc.ca	37	18	72998347	72998347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TSHZ1	NM_005786	exon2	c.A850G	p.T284A	.	.	97	6	137	0	.	90
TTPAL	79183	bcgsc.ca	37	20	43113158	43113158	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TTPAL	NM_001039199	exon3	c.T627C	p.I209I	.	.	148	5	148	0	.	153
TYRP1	7306	bcgsc.ca	37	9	12695541	12695541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TYRP1	NM_000550	exon3	c.A412G	p.K138E	.	.	89	5	116	0	.	226
UBA6	55236	bcgsc.ca	37	4	68499161	68499161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UBA6	NM_018227	exon23	c.T2044C	p.C682R	.	.	65	4	151	0	.	90
UBA7	7318	bcgsc.ca	37	3	49845832	49845832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UBA7	NM_003335	exon19	c.T2417C	p.L806P	.	.	74	4	110	0	.	228
UBAP2L	9898	bcgsc.ca	37	1	154223634	154223634	+	Missense_Mutation	SNP	C	C	A	rs200219645		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UBAP2L	NM_001127320	exon13	c.C1331A	p.T444N	.	.	108	14	179	6	.	91
UBE2M	9040	bcgsc.ca	37	19	59068287	59068287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UBE2M	NM_003969	exon3	c.A215G	p.K72R	.	.	80	4	118	0	.	228
UBQLN1	29979	bcgsc.ca	37	9	86300987	86300987	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UBQLN1	NM_053067	exon2	c.A264G	p.Q88Q	.	.	56	4	93	0	.	90
UBR1	197131	bcgsc.ca	37	15	43322211	43322211	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UBR1	NM_174916	exon21	c.A2310G	p.R770R	.	.	208	6	264	2	.	91
UHRF1BP1	54887	bcgsc.ca	37	6	34826944	34826944	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UHRF1BP1	NM_017754	exon14	c.C2811T	p.S937S	.	.	77	6	105	0	.	93
UHRF1BP1	54887	bcgsc.ca;mdanderson.org	37	6	34802105	34802105	+	Silent	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UHRF1BP1	NM_017754	exon5	c.C450A	p.L150L	.	.	223	20	285	1	.	93
UNC119B	84747	bcgsc.ca	37	12	121154671	121154671	+	Splice_Site	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UNC119B	NM_001080533	exon4	c.471-2A>G	.	.	.	182	6	221	0	.	69
UNC5B	219699	bcgsc.ca	37	10	73057785	73057785	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	UNC5B	NM_170744	exon16	c.A2610G	p.L870L	.	.	47	4	64	0	.	228
URI1	8725	hgsc.bcm.edu;bcgsc.ca	37	19	30476164	30476164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_003796	exon3	c.G187A	p.E63K	.	.	263	15	359	0	.	.
USH2A	7399	ucsc.edu;bcgsc.ca	37	1	216462662	216462662	+	Missense_Mutation	SNP	T	T	A	rs1805048	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USH2A	NM_007123	exon11	c.A1931T	p.D644V	.	.	173	18	208	2	T|0.691;A|0.309	115
USHBP1	83878	bcgsc.ca	37	19	17369122	17369122	+	Silent	SNP	G	G	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USHBP1	NM_031941	exon8	c.C1119G	p.A373A	.	.	157	11	179	0	.	91
USP25	29761	bcgsc.ca	37	21	17150333	17150333	+	Missense_Mutation	SNP	C	C	A	rs79081278		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USP25	NM_013396	exon4	c.C379A	p.Q127K	.	.	191	71	298	15	.	663
USP40	55230	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	234394446	234394446	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USP40	NM_018218	exon28	c.C3408T	p.P1136P	.	.	335	21	438	0	.	455
VN1R1	57191	bcgsc.ca	37	19	57967777	57967777	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	VN1R1	NM_020633	exon1	c.T78C	p.S26S	.	.	200	6	190	0	.	91
VPS39	23339	ucsc.edu;bcgsc.ca	37	15	42453963	42453963	+	Silent	SNP	T	T	C	rs16972779	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	VPS39	NM_015289	exon24	c.A2469G	p.E823E	.	.	125	12	152	3	T|0.928;C|0.072	229
VRK1	7443	bcgsc.ca	37	14	97321689	97321689	+	Silent	SNP	C	C	T	rs2230532	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	VRK1	NM_003384	exon8	c.C705T	p.G235G	.	.	137	8	158	1	C|0.650;T|0.350	358
WASL	8976	bcgsc.ca	37	7	123388732	123388732	+	Silent	SNP	G	G	A	rs1054706	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WASL	NM_003941	exon1	c.C57T	p.S19S	.	.	41	5	27	0	G|0.572;A|0.428	90
WDFY4	57705	bcgsc.ca	37	10	50004372	50004372	+	Silent	SNP	C	C	T	rs41282011	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WDFY4	NM_020945	exon24	c.C4287T	p.A1429A	.	.	122	7	199	1	C|0.891;T|0.109	22
WDR11	55717	ucsc.edu;bcgsc.ca	37	10	122645376	122645376	+	Silent	SNP	A	A	T	rs7899928	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WDR11	NM_018117	exon15	c.A1899T	p.A633A	.	.	79	6	95	1	A|0.640;T|0.360	226
WDR59	79726	ucsc.edu	37	16	74942828	74942828	+	Missense_Mutation	SNP	A	A	G	rs201965155	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WDR59	NM_030581	exon17	c.T1690C	p.S564P	.	.	68	12	79	7	A|0.983;G|0.016	92
WFS1	7466	bcgsc.ca	37	4	6303354	6303354	+	Missense_Mutation	SNP	G	G	A	rs734312	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WFS1	NM_001145853	exon8	c.G1832A	p.R611H	.	.	189	7	292	5	G|0.550;A|0.450	91
WHSC1L1	54904	bcgsc.ca	37	8	38147023	38147023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WHSC1L1	NM_023034	exon18	c.C3119G	p.A1040G	.	.	325	57	508	25	.	658
WHSC1L1	54904	bcgsc.ca	37	8	38188978	38188978	+	Missense_Mutation	SNP	G	G	T	rs200518220		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WHSC1L1	NM_017778	exon5	c.C1036A	p.Q346K	.	.	326	50	394	7	.	658
WWC3	55841	bcgsc.ca	37	X	10085259	10085259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	WWC3	NM_015691	exon11	c.G1160A	p.S387N	.	.	64	6	97	0	.	134
XYLT2	64132	bcgsc.ca	37	17	48431032	48431032	+	Silent	SNP	G	G	A	rs739990	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	XYLT2	NM_022167	exon2	c.G177A	p.E59E	.	.	56	4	81	0	G|0.851;A|0.149	91
YEATS2	55689	bcgsc.ca	37	3	183524712	183524712	+	Silent	SNP	A	A	G	rs145482556		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	YEATS2	NM_018023	exon28	c.A3843G	p.Q1281Q	.	.	175	6	292	1	A|0.999;G|0.000	138
ZBTB11	27107	bcgsc.ca	37	3	101390852	101390852	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZBTB11	NM_014415	exon2	c.G516A	p.K172K	.	.	317	36	458	8	.	91
ZBTB39	9880	bcgsc.ca	37	12	57397158	57397158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZBTB39	NM_014830	exon2	c.A1544G	p.N515S	.	.	66	4	98	0	.	135
ZC3HAV1	56829	ucsc.edu	37	7	138740037	138740037	+	Missense_Mutation	SNP	G	G	C	rs2297236	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZC3HAV1	NM_020119	exon10	c.C2101G	p.Q701E	.	.	71	6	110	2	G|0.451;C|0.549	91
ZDBF2	57683	bcgsc.ca	37	2	207175070	207175070	+	Missense_Mutation	SNP	G	G	A	rs138061259	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZDBF2	NM_020923	exon5	c.G5818A	p.A1940T	.	.	190	7	271	5	G|0.981;A|0.019	3
ZDHHC17	23390	bcgsc.ca	37	12	77203493	77203493	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_015336	exon5	c.A399G	p.R133R	.	.	95	5	120	0	.	.
ZFP1	162239	bcgsc.ca	37	16	75203908	75203908	+	Silent	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZFP1	NM_153688	exon4	c.A900G	p.E300E	.	.	82	5	120	0	.	92
ZFP2	80108	bcgsc.ca	37	5	178359136	178359136	+	Silent	SNP	A	A	G	rs961030	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZFP2	NM_030613	exon5	c.A822G	p.Q274Q	.	.	104	5	118	1	A|0.718;G|0.282	93
ZFP2	80108	bcgsc.ca	37	5	178359205	178359205	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZFP2	NM_030613	exon5	c.T891C	p.P297P	.	.	90	4	80	0	.	93
ZFYVE20	64145	bcgsc.ca	37	3	15126551	15126551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZFYVE20	NM_022340	exon7	c.T392C	p.L131P	.	.	205	6	285	3	.	92
ZGPAT	84619	bcgsc.ca	37	20	62366007	62366007	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZGPAT	NM_032527	exon5	c.G882A	p.S294S	.	.	214	21	305	3	.	90
ZGPAT	84619	bcgsc.ca	37	20	62366010	62366010	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZGPAT	NM_032527	exon5	c.C885T	p.D295D	.	.	220	20	302	2	.	90
ZGPAT	84619	bcgsc.ca	37	20	62366013	62366013	+	Silent	SNP	C	C	T	rs148382929	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZGPAT	NM_032527	exon5	c.C888T	p.A296A	.	.	226	22	313	2	C|1.000;T|0.000	90
ZNF181	339318	bcgsc.ca	37	19	35232066	35232066	+	Silent	SNP	A	A	G	rs150022079		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF181	NM_001029997	exon4	c.A780G	p.T260T	.	.	152	11	191	2	A|1.000;G|0.000	91
ZNF18	7566	bcgsc.ca	37	17	11895772	11895772	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF18	NM_144680	exon4	c.A375G	p.R125R	.	.	70	4	98	0	.	90
ZNF233	353355	hgsc.bcm.edu	37	19	44778797	44778797	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF233	NM_001207005	exon5	c.1984delT	p.L662fs	.	.	88	81	111	0	.	92
ZNF280D	54816	bcgsc.ca	37	15	56927437	56927437	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF280D	NM_017661	exon21	c.A2271G	p.R757R	.	.	153	6	183	0	.	46
ZNF28	7576	bcgsc.ca	37	19	53303890	53303890	+	Missense_Mutation	SNP	C	C	G	rs57548937	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF28	NM_006969	exon4	c.G1208C	p.R403T	.	.	125	7	137	2	C|0.898;G|0.102	91
ZNF354C	30832	bcgsc.ca	37	5	178506297	178506297	+	Silent	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF354C	NM_014594	exon5	c.C864A	p.I288I	.	.	95	4	139	0	.	91
ZNF395	55893	bcgsc.ca	37	8	28207661	28207661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF395	NM_018660	exon8	c.T1246C	p.F416L	.	.	40	4	72	0	.	90
ZNF408	79797	bcgsc.ca	37	11	46726458	46726458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF408	NM_024741	exon5	c.A1208G	p.H403R	.	.	78	6	108	0	.	90
ZNF488	118738	bcgsc.ca	37	10	48371430	48371430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF488	NM_153034	exon2	c.A898G	p.K300E	.	.	52	4	59	0	.	91
ZNF519	162655	bcgsc.ca	37	18	14105853	14105853	+	Missense_Mutation	SNP	C	C	A	rs8094412	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF519	NM_145287	exon3	c.G686T	p.R229I	.	.	368	18	432	6	C|0.863;A|0.137	90
ZNF564	163050	bcgsc.ca	37	19	12638380	12638380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF564	NM_144976	exon4	c.T542C	p.L181P	.	.	151	5	232	1	.	91
ZNF569	148266	bcgsc.ca	37	19	37903589	37903589	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF569	NM_152484	exon6	c.A1971G	p.T657T	.	.	153	6	214	0	.	154
ZNF587	84914	bcgsc.ca	37	19	58371259	58371259	+	Silent	SNP	A	A	G	rs75951435	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF587	NM_032828	exon3	c.A1479G	p.E493E	.	.	496	16	703	9	A|0.963;G|0.037	90
ZNF607	84775	bcgsc.ca	37	19	38189694	38189694	+	Silent	SNP	G	G	A	rs117357379	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF607	NM_032689	exon5	c.C1338T	p.Y446Y	.	.	117	5	157	1	G|0.996;A|0.004	90
ZNF630	57232	bcgsc.ca	37	X	47919855	47919855	+	Missense_Mutation	SNP	C	C	T	rs41297342		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF630	NM_001037735	exon4	c.G212A	p.S71N	.	.	103	7	124	1	C|0.979;T|0.021	131
ZNF638	27332	hgsc.bcm.edu;bcgsc.ca	37	2	71658550	71658550	+	Missense_Mutation	SNP	T	T	G	rs201989581	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF638	NM_014497	exon26	c.T5744G	p.V1915G	.	.	292	12	404	0	T|0.999;C|0.001	94
ZNF678	339500	ucsc.edu	37	1	227843003	227843003	+	Missense_Mutation	SNP	G	G	A	rs61740826	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF678	NM_178549	exon4	c.G1217A	p.C406Y	.	.	62	8	75	2	G|0.983;A|0.017	91
ZNF713	349075	ucsc.edu;bcgsc.ca	37	7	56007576	56007576	+	Silent	SNP	C	C	T	rs34016595	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF713	NM_182633	exon4	c.C1170T	p.C390C	.	.	108	11	117	1	C|0.694;T|0.306	92
ZNF721	170960	ucsc.edu	37	4	435366	435366	+	RNA	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF721	.	.	.	.	.	.	25	4	37	0	.	47
ZNF76	7629	ucsc.edu	37	6	35260503	35260503	+	Silent	SNP	C	C	T	rs1557567	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF76	NM_003427	exon10	c.C1104T	p.H368H	.	.	56	6	93	2	C|0.371;T|0.629	90
ZNF792	126375	bcgsc.ca	37	19	35449921	35449921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_175872	exon4	c.A838G	p.R280G	.	.	221	7	340	0	.	.
ZNF804B	219578	bcgsc.ca	37	7	88964510	88964510	+	Silent	SNP	T	T	C	rs62469518	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF804B	NM_181646	exon4	c.T2214C	p.N738N	.	.	141	11	171	2	T|0.939;C|0.061	101
ZNF85	7639	bcgsc.ca	37	19	21132263	21132263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF85	NM_001256171	exon5	c.A1033G	p.K345E	.	.	57	4	98	0	.	514
ZNF91	7644	bcgsc.ca	37	19	23543095	23543095	+	Missense_Mutation	SNP	T	T	C	rs296093	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF91	NM_003430	exon4	c.A2686G	p.T896A	.	.	115	5	141	1	T|0.862;C|0.138	90
ZSCAN18	65982	bcgsc.ca	37	19	58596206	58596206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZSCAN18	NM_001145542	exon7	c.A1547G	p.Q516R	.	.	19	5	29	0	.	90
ZSCAN5B	342933	bcgsc.ca	37	19	56703248	56703248	+	Missense_Mutation	SNP	G	G	A	rs527025	byfrequency	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZSCAN5B	NM_001080456	exon2	c.C559T	p.P187S	.	.	68	5	112	1	G|0.726;A|0.274	24
ZW10	9183	bcgsc.ca	37	11	113618416	113618416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZW10	NM_004724	exon9	c.A1109G	p.E370G	.	.	113	6	140	0	.	228
CHEK2	11200	bcgsc.ca	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	.	.	.	p.K416E	.	.	.	.	.	.	.	
