Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA1	19	bcgsc.ca	37	9	107586753	107586753	+	Missense_Mutation	SNP	T	T	C	rs2066714	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ABCA1	NM_005502	exon18	c.A2649G	p.I883M	.	.	91	5	164	2	T|0.686;C|0.314	1016
ACTR8	93973	broad.mit.edu;ucsc.edu	37	3	53911741	53911741	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ACTR8	NM_022899	exon4	c.T443G	p.L148X	.	.	126	53	154	2	.	91
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	9255937	9255939	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ANKRD12	NM_015208	exon9	c.2672_2674del	p.891_892del	.	.	49	12	45	0	.	92
ANO10	55129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43618347	43618347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ANO10	NM_018075	exon6	c.G999A	p.M333I	.	.	202	92	288	0	.	92
ARL9	132946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57389953	57389953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ARL9	NM_206919	exon4	c.A283G	p.T95A	.	.	91	80	201	0	.	22
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232087516	232087516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ARMC9	NM_025139	exon6	c.A580G	p.K194E	.	.	125	56	131	0	.	91
B3GNT6	192134	bcgsc.ca	37	11	76751166	76751166	+	Missense_Mutation	SNP	G	G	A	rs73493606	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_138706	exon2	c.G571A	p.A191T	.	.	4	3	27	0	G|0.835;A|0.165	.
B4GALNT4	338707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	373809	373809	+	Missense_Mutation	SNP	C	C	T	rs144647644	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	B4GALNT4	NM_178537	exon8	c.C764T	p.S255L	.	.	41	18	106	0	C|1.000;T|0.000	91
BAX	581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49464295	49464295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BAX	NM_004324	exon5	c.C598T	p.P200S	.	.	28	14	22	0	.	1271
BMP2	650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6759153	6759153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BMP2	NM_001200	exon3	c.G608T	p.R203M	.	.	96	44	100	0	.	1044
BPGM	669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134346580	134346580	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BPGM	NM_199186	exon3	c.T321C	p.H107H	.	.	294	120	301	1	.	226
BZRAP1	9256	bcgsc.ca	37	17	56389732	56389732	+	Missense_Mutation	SNP	T	T	C	rs9913145	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	BZRAP1	NM_004758	exon17	c.A2450G	p.Q817R	.	.	49	4	147	0	T|0.850;C|0.150	229
C1orf213	148898	ucsc.edu;mdanderson.org	37	1	23698088	23698088	+	RNA	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	C1orf213	.	.	.	.	.	.	90	24	101	0	.	68
C1QTNF1	114897	bcgsc.ca	37	17	77040128	77040128	+	Silent	SNP	T	T	C	rs4789922	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	C1QTNF1	NM_030968	exon2	c.T78C	p.R26R	.	.	45	5	132	0	T|0.767;C|0.233	91
C1QTNF1	114897	bcgsc.ca	37	17	77040185	77040185	+	Silent	SNP	G	G	C	rs4789853	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	C1QTNF1	NM_030968	exon2	c.G135C	p.S45S	.	.	36	5	83	1	G|0.565;C|0.435	91
C5orf52	100190949	bcgsc.ca	37	5	157098756	157098756	+	Missense_Mutation	SNP	G	G	T	rs11740603	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001145132	exon1	c.G134T	p.R45L	.	.	41	4	222	3	G|0.815;T|0.185	.
C9orf84	158401	bcgsc.ca	37	9	114490308	114490308	+	Missense_Mutation	SNP	T	T	C	rs7470491	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	C9orf84	NM_173521	exon11	c.A1247G	p.H416R	.	.	95	5	88	0	T|0.172;C|0.828	92
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2229596	2229596	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CACNA1C	NM_001129831	exon3	c.G477T	p.L159L	.	.	101	86	224	1	.	34
CCDC116	164592	ucsc.edu;bcgsc.ca	37	22	21990823	21990823	+	Missense_Mutation	SNP	G	G	A	rs11705259	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC116	NM_152612	exon5	c.G1306A	p.A436T	.	.	58	6	97	0	G|0.976;A|0.024	92
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49200783	49200783	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC71	NM_022903	exon2	c.C859G	p.R287G	.	.	23	12	34	0	.	91
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898811	130898811	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CCDC74B	NM_207310	exon4	c.C603A	p.P201P	.	.	158	75	230	1	.	90
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109814047	109814047	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CELSR2	NM_001408	exon27	c.G7716A	p.L2572L	.	.	154	75	179	0	.	526
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40045242	40045242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CHD6	NM_032221	exon33	c.G6472A	p.A2158T	.	.	64	20	89	0	.	238
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	103480065	103480065	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	COL11A1	NM_001190709	exon13	c.1455+2T>A	.	.	.	151	65	181	1	.	586
COL13A1	1305	bcgsc.ca	37	10	71562437	71562437	+	Silent	SNP	G	G	A	rs10998973	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	COL13A1	NM_080800	exon1	c.G258A	p.T86T	.	.	97	6	401	4	G|0.444;A|0.556	91
COX2	5743	broad.mit.edu	37	MT	7895	7895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	ENST00000361739	exon1	c.T310C	p.W104R	.	.	24	3	32	0	.	.
CROCC	9696	broad.mit.edu	37	1	17257061	17257061	+	Missense_Mutation	SNP	G	G	A	rs148225787	byfrequency;alternate_allele	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CROCC	NM_014675	exon7	c.G821A	p.R274Q	.	.	85	3	195	1	G|0.999;T|0.001	137
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41274853	41274853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	CTNNB1	NM_001098209	exon8	c.T1103A	p.L368H	.	.	191	92	200	1	.	24361
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	DCLK1	NM_004734	exon2	c.C53T	p.A18V	.	.	22	21	69	0	.	826
DDR2	4921	bcgsc.ca	37	1	162740265	162740265	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	DDR2	NM_001014796	exon13	c.1467delA	p.R489fs	.	.	464	59	415	3	.	1464
DPY19L2P1	554236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35131548	35131548	+	RNA	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	.	.	226	100	307	0	.	.
EIF3IP1	442720	ucsc.edu;bcgsc.ca	37	7	109599723	109599723	+	RNA	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	.	.	23	11	27	0	.	.
EMC7	56851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34393819	34393819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_020154	exon1	c.C222G	p.H74Q	.	.	89	15	145	0	.	.
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5428441	5428441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EPB41L3	NM_012307	exon9	c.G936C	p.M312I	.	.	79	35	94	0	.	95
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97194245	97194245	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EPHA6	NM_001080448	exon8	c.C1944T	p.A648A	.	.	83	14	89	0	.	1561
EXOC6	54536	broad.mit.edu;bcgsc.ca	37	10	94733850	94733850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	EXOC6	NM_019053	exon18	c.T1814C	p.L605P	.	.	40	36	100	3	.	91
FAM205B	389715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34837695	34837695	+	RNA	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	.	.	135	76	172	1	.	.
FAM86A	196483	broad.mit.edu	37	16	5135657	5135657	+	Missense_Mutation	SNP	C	C	T	rs190402165		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FAM86A	NM_201400	exon8	c.G969A	p.M323I	.	.	170	5	382	1	C|0.998;T|0.002	90
FAT2	2196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150948080	150948080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FAT2	NM_001447	exon1	c.T413G	p.I138S	.	.	218	99	296	2	.	96
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58107094	58107094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FLNB	NM_001457	exon20	c.C2990G	p.T997R	.	.	103	52	153	0	.	593
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180048543	180048543	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FLT4	NM_182925	exon13	c.G2019A	p.Q673Q	.	.	59	18	164	0	.	1490
FYN	2534	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111982951	111982951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	FYN	NM_002037	exon14	c.A1605C	p.E535D	.	.	33	32	72	1	.	1000
GFRA3	2676	broad.mit.edu	37	5	137593407	137593407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GFRA3	NM_001496	exon4	c.G706A	p.A236T	.	.	8	5	15	0	.	91
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42004352	42004352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GLI3	NM_000168	exon15	c.C4319A	p.S1440Y	.	.	196	88	222	0	.	1149
GMPR	2766	ucsc.edu;bcgsc.ca	37	6	16279097	16279097	+	Silent	SNP	T	T	C	rs739473	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GMPR	NM_006877	exon6	c.T630C	p.H210H	.	.	42	4	87	1	T|0.909;C|0.091	91
GON4L	54856	broad.mit.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GON4L	NM_001037533	exon22	c.G4584A	p.E1528E	.	.	82	5	69	1	.	93
GRIA1	2890	broad.mit.edu	37	5	153144137	153144137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	GRIA1	NM_001258021	exon12	c.A1997T	p.Q666L	.	.	199	5	228	0	.	96
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18869095	18869095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HDAC9	NM_178425	exon18	c.T2390A	p.F797Y	.	.	67	15	70	0	.	227
HR	55806	bcgsc.ca	37	8	21984945	21984945	+	Missense_Mutation	SNP	C	C	T	rs12675375	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HR	NM_018411	exon3	c.G1010A	p.G337D	.	.	99	5	133	1	C|0.723;T|0.277	154
HSF2	3298	broad.mit.edu	37	6	122733573	122733573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HSF2	NM_004506	exon2	c.C149A	p.P50H	.	.	102	2	241	0	.	90
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	44219604	44219604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HSP90AB1	NM_007355	exon9	c.1445delC	p.S482fs	.	.	46	30	160	0	.	658
HYDIN	54768	hgsc.bcm.edu	37	16	70894680	70894680	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	HYDIN	NM_001270974	exon70	c.11902delG	p.E3968fs	.	.	74	12	66	0	.	92
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	161055767	161055767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ITGB6	NM_000888	exon2	c.G64A	p.G22S	.	.	474	92	587	1	.	227
ITSN2	50618	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24509193	24509193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ITSN2	NM_147152	exon16	c.A1751C	p.K584T	.	.	269	27	157	2	.	539
KCNN1	3780	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18099244	18099244	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KCNN1	NM_002248	exon7	c.C1080T	p.L360L	.	.	59	23	137	1	.	22
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86669229	86669229	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KDM3A	NM_001146688	exon2	c.59delT	p.L20fs	.	.	92	58	160	0	.	291
KDM3B	51780	bcgsc.ca	37	5	137708434	137708434	+	Silent	SNP	C	C	T	rs4835678	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KDM3B	NM_016604	exon2	c.C264T	p.I88I	.	.	150	8	187	2	C|0.379;T|0.621	542
KIR3DL2	3812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55378066	55378066	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KIR3DL2	NM_006737	exon9	c.G1248A	p.Q416Q	.	.	213	36	195	1	.	92
KLHL24	54800	bcgsc.ca	37	3	183368216	183368216	+	Silent	SNP	A	A	T	rs3755648	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	KLHL24	NM_017644	exon3	c.A72T	p.R24R	.	.	109	5	111	0	A|0.575;T|0.425	91
KRTAP4-7	100132476	ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_033061	exon1	c.T169C	p.S57P	.	.	46	4	82	5	.	.
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43622043	43622043	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LCMT2	NM_014793	exon1	c.C645G	p.F215L	.	.	101	53	256	0	.	90
LOC96610	0	bcgsc.ca	37	22	22664186	22664186	+	RNA	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	.	.	133	10	328	3	.	.
LRFN2	57497	broad.mit.edu	37	6	40359947	40359947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LRFN2	NM_020737	exon3	c.C2105T	p.P702L	.	.	5	3	34	0	.	93
LRRC33	375387	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	196386948	196386948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	LRRC33	NM_198565	exon3	c.C434T	p.T145M	.	.	43	7	97	1	.	92
MEGF6	1953	bcgsc.ca	37	1	3428608	3428608	+	Missense_Mutation	SNP	G	G	A	rs11585362	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	MEGF6	NM_001409	exon8	c.C938T	p.A313V	.	.	188	7	459	4	G|0.738;A|0.262	90
MMP17	4326	bcgsc.ca	37	12	132335477	132335477	+	Silent	SNP	C	C	G	rs7975920	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	MMP17	NM_016155	exon10	c.C1470G	p.S490S	.	.	106	6	425	4	C|0.952;G|0.048	226
MYLIP	29116	bcgsc.ca	37	6	16145325	16145325	+	Missense_Mutation	SNP	A	A	G	rs9370867	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	MYLIP	NM_013262	exon6	c.A1025G	p.N342S	.	.	105	5	249	2	A|0.313;G|0.687	91
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95111015	95111015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	MYOF	NM_013451	exon35	c.C3860T	p.A1287V	.	.	71	15	208	0	.	93
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56321586	56321586	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NLRP11	NM_145007	exon5	c.C390T	p.Y130Y	.	.	107	55	131	0	.	169
NPHP4	261734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6038329	6038329	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NPHP4	NM_015102	exon4	c.279+1G>T	.	.	.	140	71	217	3	.	515
NUMA1	4926	bcgsc.ca	37	11	71715142	71715151	+	Frame_Shift_Del	DEL	CAGCCTGCAA	CAGCCTGCAA	-	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	CAGCCTGCAA	CAGCCTGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NUMA1	NM_006185	exon26	c.6124_6127del	p.2042_2043del	.	.	49	4	89	0	.	633
NUP133	55746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229586330	229586330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	NUP133	NM_018230	exon23	c.G3122A	p.R1041K	.	.	236	81	183	2	.	271
OMG	4974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29622317	29622317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	OMG	NM_002544	exon2	c.T1033A	p.S345T	.	.	136	42	170	0	.	493
OR10A4	283297	broad.mit.edu	37	11	6898293	6898293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	OR10A4	NM_207186	exon1	c.C415A	p.H139N	.	.	160	6	237	2	.	69
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu	37	11	56468748	56468748	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001013358	exon1	c.T885C	p.D295D	.	.	36	5	49	0	.	.
OTUD6A	139562	broad.mit.edu;bcgsc.ca	37	X	69282444	69282444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	OTUD6A	NM_207320	exon1	c.G70A	p.A24T	.	.	184	6	222	0	.	541
PCDHGA2	56113	bcgsc.ca	37	5	140719090	140719090	+	Silent	SNP	G	G	A	rs6861047	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PCDHGA2	NM_018915	exon1	c.G552A	p.R184R	.	.	114	5	154	2	G|0.885;A|0.115	71
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82585867	82585867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PCLO	NM_014510	exon5	c.A4402G	p.I1468V	.	.	78	35	59	1	.	29
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73433851	73433851	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PDZRN3	NM_015009	exon10	c.C1866T	p.N622N	.	.	55	26	111	1	.	232
PIGR	5284	bcgsc.ca	37	1	207109116	207109116	+	Missense_Mutation	SNP	C	C	T	rs2275531	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PIGR	NM_002644	exon5	c.G1093A	p.G365S	.	.	298	7	320	1	C|0.639;T|0.361	92
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71401594	71401594	+	Silent	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PIN4	NM_001170747	exon1	c.C34A	p.R12R	.	.	170	163	243	2	.	130
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9365037	9365037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PLCB4	NM_182797	exon12	c.A1043G	p.Q348R	.	.	153	75	177	2	.	274
POLR3A	11128	hgsc.bcm.edu	37	10	79769701	79769701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	POLR3A	NM_007055	exon13	c.C1691A	p.A564D	.	.	78	4	211	0	.	90
POM121L4P	266697	broad.mit.edu	37	22	21044998	21044998	+	RNA	SNP	C	C	T	rs5751737	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	.	.	93	4	273	1	C|0.878;T|0.122	.
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82571056	82571056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRCP	NM_199418	exon3	c.G335T	p.G112V	.	.	125	31	155	0	.	91
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	42853904	42853904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRICKLE1	NM_001144882	exon8	c.G2203A	p.A735T	.	.	78	27	92	0	.	518
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30066720	30066720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRKD1	NM_002742	exon16	c.C2411A	p.P804H	.	.	78	41	87	0	.	1534
PRR15	222171	bcgsc.ca	37	7	29606288	29606288	+	Missense_Mutation	SNP	C	C	T	rs10271996	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PRR15	NM_175887	exon2	c.C343T	p.P115S	.	.	92	5	120	0	A|0.000;C|0.590;G|0.000;T|0.409	46
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	27255270	27255270	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	PTK2B	NM_173174	exon7	c.A169T	p.K57X	.	.	236	97	286	0	.	1378
RHOT2	89941	ucsc.edu;bcgsc.ca	37	16	722331	722331	+	Missense_Mutation	SNP	C	C	T	rs3177338	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	RHOT2	NM_138769	exon15	c.C1273T	p.R425C	.	.	45	6	90	1	C|0.469;T|0.531	91
RSRC2	65117	broad.mit.edu;bcgsc.ca	37	12	123006742	123006742	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	RSRC2	NM_023012	exon2	c.A111G	p.K37K	.	.	99	6	116	0	.	91
SBF1	6305	bcgsc.ca	37	22	50894993	50894993	+	Silent	SNP	G	G	T	rs75567487		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SBF1	NM_002972	exon30	c.C4014A	p.G1338G	.	.	10	3	83	0	.	90
SCNN1D	6339	broad.mit.edu	37	1	1220954	1220954	+	Silent	SNP	G	G	A	rs12751100	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SCNN1D	NM_001130413	exon6	c.G468A	p.S156S	.	.	246	6	437	2	G|0.609;A|0.391	90
SCUBE3	222663	broad.mit.edu	37	6	35195397	35195397	+	Silent	SNP	C	C	A	rs76268578		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SCUBE3	NM_152753	exon2	c.C126A	p.I42I	.	.	114	6	179	0	C|1.000;A|0.000	91
SIGLEC14	100049587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52149062	52149062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SIGLEC14	NM_001098612	exon3	c.G673A	p.E225K	.	.	441	196	695	1	.	23
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38633281	38633281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SIPA1L3	NM_015073	exon12	c.G3464C	p.R1155P	.	.	102	43	110	2	.	91
SKAP2	8935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26765154	26765154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SKAP2	NM_003930	exon9	c.A689G	p.Y230C	.	.	44	24	64	0	.	91
SLC22A11	55867	ucsc.edu;bcgsc.ca	37	11	64326696	64326696	+	Silent	SNP	C	C	A	rs72559737	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SLC22A11	NM_018484	exon2	c.C483A	p.G161G	.	.	56	5	71	0	C|0.995;A|0.005	91
SLC22A24	283238	broad.mit.edu	37	11	62848487	62848487	+	Nonsense_Mutation	SNP	A	A	C	rs11231341	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001136506	exon9	c.T1503G	p.Y501X	.	.	172	5	256	0	A|0.233;C|0.767	.
SLC44A5	204962	broad.mit.edu	37	1	75688080	75688080	+	Nonsense_Mutation	SNP	G	G	A	rs186295074	alternate_allele	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SLC44A5	NM_152697	exon14	c.C1051T	p.R351X	.	.	98	3	119	0	G|0.999;C|0.000	95
SLC45A1	50651	bcgsc.ca;mdanderson.org	37	1	8384368	8384368	+	Silent	SNP	A	A	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SLC45A1	.	.	.	.	.	.	32	9	61	0	.	494
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1371215	1371215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SNTG2	NM_018968	exon17	c.G1589T	p.S530I	.	.	235	53	157	0	.	136
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17890006	17890006	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SNX13	NM_015132	exon11	c.A1029G	p.V343V	.	.	62	27	78	0	.	650
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118535171	118535171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SPAG17	NM_206996	exon36	c.C5279T	p.P1760L	.	.	119	58	151	0	.	158
SRPRB	58477	bcgsc.ca	37	3	133524717	133524717	+	Missense_Mutation	SNP	G	G	C	rs1107413	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SRPRB	NM_021203	exon2	c.G25C	p.V9L	.	.	93	6	291	2	G|0.628;C|0.372	91
SSTR3	6753	bcgsc.ca	37	22	37603021	37603021	+	Silent	SNP	G	G	A	rs2071710	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SSTR3	NM_001051	exon2	c.C822T	p.Y274Y	.	.	99	8	315	3	G|0.742;A|0.258	522
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77528719	77528719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ST6GALNAC5	NM_030965	exon5	c.G839A	p.C280Y	.	.	142	70	176	0	.	92
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113173839	113173839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SVEP1	NM_153366	exon37	c.A6152G	p.Y2051C	.	.	64	43	80	0	.	75
SVOPL	136306	bcgsc.ca	37	7	138363767	138363767	+	Silent	SNP	A	A	G	rs10250576	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SVOPL	NM_001139456	exon1	c.T24C	p.P8P	.	.	198	7	173	0	A|0.433;G|0.567	68
SYNPO2	171024	bcgsc.ca	37	4	119947985	119947985	+	Missense_Mutation	SNP	G	G	C	rs12645298	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	SYNPO2	NM_001128934	exon3	c.G461C	p.G154A	.	.	92	7	193	3	G|0.768;C|0.232	92
TAF9B	51616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	77392438	77392438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TAF9B	NM_015975	exon5	c.G455T	p.S152I	.	.	83	5	107	0	.	40
TAOK3	51347	hgsc.bcm.edu	37	12	118588808	118588808	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TAOK3	NM_016281	exon21	c.C2691A	p.Y897X	.	.	36	6	37	0	.	933
TEK	7010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27157964	27157964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TEK	NM_000459	exon2	c.C188A	p.A63D	.	.	181	58	273	1	.	1584
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	43779386	43779386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	THADA	NM_001083953	exon18	c.C2767T	p.R923X	.	.	319	229	179	0	.	228
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134854	128134854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	THEMIS	NM_001010923	exon4	c.A932G	p.K311R	.	.	59	46	118	0	.	94
TICAM1	148022	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4817368	4817368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TICAM1	NM_182919	exon2	c.C1022A	p.T341N	.	.	172	76	155	1	.	153
TLE1	7088	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84208091	84208091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLE1	NM_005077	exon15	c.A1430G	p.Q477R	.	.	135	46	233	1	.	92
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84208095	84208095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLE1	NM_005077	exon15	c.C1426A	p.R476S	.	.	136	50	237	0	.	92
TLN2	83660	bcgsc.ca	37	15	63047778	63047778	+	Silent	SNP	C	C	T	rs8033767	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TLN2	NM_015059	exon34	c.C4524T	p.C1508C	.	.	185	8	365	6	C|0.353;T|0.647	573
TMCO4	255104	bcgsc.ca	37	1	20009737	20009737	+	Silent	SNP	G	G	A	rs10917514	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TMCO4	NM_181719	exon16	c.C1701T	p.S567S	.	.	190	6	342	2	G|0.888;A|0.112	68
TMEM110-MUSTN1	100526772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52867655	52867655	+	Silent	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001198974	exon9	c.C990A	p.T330T	.	.	99	43	96	0	.	.
TMEM132D	121256	broad.mit.edu	37	12	129558549	129558549	+	Silent	SNP	G	G	A	rs74724941		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	TMEM132D,NS,carcinoma,0	TMEM132D	NM_133448	exon9	c.C3171T	p.D1057D	.	.	90	4	199	0	G|0.999;A|0.001	106
TMEM132E	124842	bcgsc.ca	37	17	32953258	32953258	+	Silent	SNP	G	G	A	rs4795954	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TMEM132E	NM_207313	exon2	c.G180A	p.E60E	.	.	30	5	138	1	G|0.870;A|0.130	68
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577111	7577111	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.C827G	p.A276G	.	.	46	41	128	0	.	70225
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31294718	31294718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TRPM1	NM_001252020	exon27	c.A4236T	p.K1412N	.	.	43	18	50	0	.	94
TRPM6	140803	bcgsc.ca	37	9	77376647	77376647	+	Missense_Mutation	SNP	T	T	C	rs2274924	byfrequency	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TRPM6	NM_017662	exon27	c.A4750G	p.K1584E	.	.	78	5	90	0	T|0.756;C|0.244	335
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130493535	130493535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TTC16	NM_144965	exon14	c.G2473C	p.G825R	.	.	186	51	297	0	.	90
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179494983	179494983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TTN	NM_001267550	exon239	c.C44266A	p.H14756N	.	.	106	52	137	1	.	636
TUBBP5	643224	bcgsc.ca	37	9	141071521	141071543	+	RNA	DEL	TGTCTCAGAGCAGTTTACAGCAA	TGTCTCAGAGCAGTTTACAGCAA	-	rs145429844	bycluster;by1000genomes	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	TGTCTCAGAGCAGTTTACAGCAA	TGTCTCAGAGCAGTTTACAGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	.	.	.	120	8	162	0	.	.
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10475628	10475628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	TYK2	NM_003331	exon8	c.C1108T	p.R370W	.	.	68	14	95	0	.	1009
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4924702	4924702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	UBN1	NM_001079514	exon15	c.C2291A	p.S764Y	.	.	24	4	49	0	.	92
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82835447	82835447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	VCAN	NM_004385	exon8	c.A6625C	p.T2209P	.	.	109	58	123	0	.	238
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10077080	10077080	+	Silent	SNP	G	G	A	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	WDR1	NM_017491	exon15	c.C1743T	p.S581S	.	.	200	68	387	1	.	48
ZDHHC12	84885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131483968	131483968	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC12	NM_032799	exon4	c.G444A	p.L148L	.	.	267	31	618	0	.	90
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466587	57466587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC5	NM_015457	exon11	c.G1679T	p.R560L	.	.	63	15	92	0	.	226
ZDHHC8	29801	broad.mit.edu	37	22	20134739	20134739	+	Silent	SNP	C	C	T	rs9605070	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZDHHC8	NM_001185024	exon11	c.C2322T	p.S774S	.	.	25	3	70	2	C|0.881;T|0.119	91
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180276821	180276821	+	Silent	SNP	T	T	C	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001172638	exon2	c.A1674G	p.E558E	.	.	66	19	66	0	.	.
ZNF469	84627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88502790	88502790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	NM_001127464	exon2	c.C8828T	p.A2943V	.	.	41	15	92	1	.	.
ZNF600	162966	broad.mit.edu;bcgsc.ca	37	19	53269063	53269063	+	Missense_Mutation	SNP	C	C	T	rs192291135		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF600	NM_198457	exon3	c.G1946A	p.R649H	.	.	91	6	100	0	C|0.999;T|0.001	90
ZNF687	57592	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151258940	151258940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF687	NM_020832	exon2	c.C173T	p.S58F	.	.	74	37	86	1	.	92
ZNF710	374655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90611162	90611162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF710	NM_198526	exon2	c.C793T	p.R265C	.	.	94	51	196	0	.	90
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu	37	6	35262247	35262247	+	Silent	SNP	C	C	T	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZNF76	NM_003427	exon13	c.C1509T	p.T503T	.	.	104	5	332	0	.	90
ZSWIM3	140831	ucsc.edu;bcgsc.ca	37	20	44506763	44506763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	ZSWIM3	NM_080752	exon2	c.C1566G	p.H522Q	.	.	133	54	183	3	.	92
PIWIL4	143689	bcgsc.ca	37	11	94322352	94322353	+	Missense_Mutation	DNP	AG	AG	TA	novel		TCGA-BC-A5W4-01A-11D-A28X-10	TCGA-BC-A5W4-10A-01D-A28X-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b8ed2260-c9ac-4a92-ae6a-8c6d3ec81274	6f170e0b-fdc4-4cc0-a824-cdd9c60aff16	.	.	.	.	.	p.Q327L	.	.	.	.	.	.	.	
