Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	bcgsc.ca	37	17	67215704	67215704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ABCA10	NM_080282	exon7	c.T512C	p.L171P	.	.	99	4	60	0	.	93
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17418492	17418492	+	Missense_Mutation	SNP	C	C	A	rs138642224	byfrequency;alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ABCC8	NM_000352	exon33	c.G4090T	p.V1364F	.	.	195	78	135	0	C|0.999;T|0.001	91
ABHD13	84945	bcgsc.ca	37	13	108881760	108881760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ABHD13	NM_032859	exon2	c.T194C	p.L65P	.	.	199	6	116	0	.	93
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130343256	130343256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS15	NM_139055	exon8	c.T2393G	p.F798C	.	.	150	74	122	0	.	291
ADAMTS1	9510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	28211905	28211905	+	Splice_Site	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS1	NM_006988	exon8	c.2028+1G>T	.	.	.	27	12	27	0	.	272
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10614393	10614393	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_020233	exon4	c.961delT	p.L321X	.	.	64	39	68	0	.	.
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148037577	148037577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AFF2	NM_002025	exon11	c.A2002G	p.R668G	.	.	50	42	30	0	.	135
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47712149	47712149	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AGBL2	NM_024783	exon10	c.G1110A	p.G370G	.	.	216	97	157	0	.	92
ALMS1	7840	bcgsc.ca	37	2	73679343	73679343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ALMS1	NM_015120	exon8	c.T5686C	p.S1896P	.	.	70	4	62	0	.	142
AP3B1	8546	bcgsc.ca	37	5	77511883	77511883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AP3B1	NM_003664	exon7	c.A782G	p.K261R	.	.	97	4	68	0	.	90
APBB1	322	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6422250	6422250	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	APBB1	NM_001164	exon11	c.C1641G	p.Y547X	.	.	197	75	118	1	.	136
APC	324	bcgsc.ca	37	5	112177284	112177284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	APC	NM_001127510	exon17	c.A5993G	p.E1998G	.	.	245	6	195	0	.	12026
ARHGAP32	9743	bcgsc.ca	37	11	128839721	128839721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ARHGAP32	NM_001142685	exon22	c.A5345G	p.D1782G	.	.	97	5	88	0	.	231
ARHGEF15	22899	bcgsc.ca	37	17	8222635	8222635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ARHGEF15	NM_025014	exon14	c.A2192G	p.D731G	.	.	54	4	74	0	.	230
ARID1A	8289	bcgsc.ca	37	1	27088658	27088658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ARID1A	NM_006015	exon7	c.A2267G	p.N756S	.	.	57	4	37	0	.	584
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14650961	14650961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ATF7IP	NM_018179	exon15	c.G3767T	p.C1256F	.	.	56	38	85	0	.	252
ATP8B4	79895	bcgsc.ca	37	15	50152397	50152397	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ATP8B4	NM_024837	exon28	c.A3573G	p.K1191K	.	.	83	4	63	0	.	140
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156618360	156618360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BCAN	NM_198427	exon6	c.G770C	p.G257A	.	.	85	32	75	0	.	516
BHLHE40	8553	bcgsc.ca	37	3	5025225	5025225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BHLHE40	NM_003670	exon5	c.T1087C	p.S363P	.	.	167	7	153	0	.	91
BRCA2	675	broad.mit.edu	37	13	32944630	32944630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BRCA2	NM_000059	exon19	c.T8423C	p.L2808P	.	.	332	9	218	1	.	3153
BRD3	8019	bcgsc.ca	37	9	136899912	136899912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BRD3	NM_007371	exon11	c.A1976G	p.E659G	.	.	69	4	49	0	.	377
BTNL2	56244	broad.mit.edu	37	6	32362632	32362632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BTNL2	NM_019602	exon6	c.T1249C	p.F417L	.	.	197	5	94	0	.	90
C11orf35	256329	hgsc.bcm.edu;broad.mit.edu	37	11	556881	556881	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C11orf35	NM_173573	exon8	c.930delC	p.S310fs	.	.	38	13	25	0	.	69
C15orf55	256646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34640560	34640560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C15orf55	NM_175741	exon2	c.C407T	p.A136V	.	.	112	39	117	0	.	206
C16orf62	57020	bcgsc.ca	37	16	19590449	19590449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C16orf62	NM_020314	exon6	c.A776G	p.E259G	.	.	87	7	56	1	.	69
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20177325	20177325	+	Missense_Mutation	SNP	C	C	T	rs142308308		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C20orf26	NM_015585	exon16	c.C1702T	p.R568W	.	.	200	113	108	0	C|1.000;T|0.000	94
C21orf59	56683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33976524	33976524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C21orf59	NM_021254	exon4	c.G445T	p.A149S	.	.	172	78	108	0	.	90
C9orf85	138241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74586499	74586499	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C9orf85	NM_182505	exon3	c.C288T	p.C96C	.	.	65	33	48	0	.	90
CA13	377677	bcgsc.ca	37	8	86178847	86178847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CA13	NM_198584	exon4	c.T365C	p.V122A	.	.	152	5	112	2	.	90
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2558277	2558277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CACNA1C	NM_001129831	exon4	c.G613T	p.V205L	.	.	97	60	118	0	.	34
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CCDC102A	NM_033212	exon2	c.C286T	p.R96W	.	.	6	6	0	0	G|0.001;A|0.999	91
CCDC68	80323	bcgsc.ca	37	18	52605216	52605216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CCDC68	NM_025214	exon5	c.A317G	p.N106S	.	.	275	7	186	0	.	91
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160801203	160801203	+	Missense_Mutation	SNP	T	T	G	rs146201991	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CD244	NM_001166663	exon9	c.A1047C	p.Q349H	.	.	115	17	74	0	T|1.000;C|0.000	91
CDC42BPA	8476	bcgsc.ca	37	1	227381552	227381552	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CDC42BPA	NM_003607	exon5	c.T534C	p.A178A	.	.	163	5	110	0	.	549
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36652024	36652024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CDKN1A	NM_001220778	exon2	c.G146T	p.W49L	.	.	78	44	32	0	.	872
CDRT1	374286	mdanderson.org	37	17	15517284	15517284	+	Missense_Mutation	SNP	G	G	C	rs3809727	bycluster	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CDRT1	NM_006382	exon3	c.C734G	p.A245G	.	.	28	8	69	2	G|0.250;C|0.750	68
CEACAM6	4680	bcgsc.ca	37	19	42260742	42260742	+	Missense_Mutation	SNP	C	C	T	rs141329594	byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CEACAM6	NM_002483	exon2	c.C299T	p.T100I	.	.	460	29	225	6	C|0.996;T|0.004	91
CELSR3	1951	broad.mit.edu	37	3	48688391	48688391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CELSR3	NM_001407	exon15	c.G6304T	p.A2102S	.	.	164	9	120	1	.	523
CHD1	1105	bcgsc.ca	37	5	98208252	98208252	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CHD1	NM_001270	exon26	c.A3579G	p.R1193R	.	.	139	6	75	0	.	274
CHEK1	1111	bcgsc.ca	37	11	125497573	125497573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CHEK1	NM_001244846	exon3	c.T137C	p.V46A	.	.	148	5	89	0	.	1509
CISD3	284106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36889706	36889706	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001136498	exon4	c.T382G	p.X128G	.	.	53	29	35	0	.	.
CLYBL	171425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100515304	100515304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CLYBL	NM_206808	exon4	c.A498C	p.L166F	.	.	65	20	38	0	.	90
CNGB3	54714	broad.mit.edu	37	8	87755807	87755807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CNGB3	NM_019098	exon1	c.A49G	p.N17D	.	.	462	8	305	0	.	93
CNOT4	4850	bcgsc.ca	37	7	135078714	135078714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CNOT4	NM_001190850	exon10	c.T1583C	p.L528P	.	.	182	38	133	18	.	90
CNPY2	10330	bcgsc.ca	37	12	56705152	56705152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CNPY2	NM_014255	exon4	c.A251G	p.E84G	.	.	95	5	74	0	.	68
CPEB4	80315	bcgsc.ca	37	5	173316996	173316996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CPEB4	NM_030627	exon1	c.A260G	p.Q87R	.	.	158	6	113	0	.	90
CPS1	1373	bcgsc.ca	37	2	211469927	211469927	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CPS1	NM_001122633	exon18	c.T1956C	p.T652T	.	.	131	5	95	0	.	162
CPS1	1373	bcgsc.ca	37	2	211512727	211512727	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CPS1	NM_001122633	exon27	c.T3300C	p.A1100A	.	.	235	6	166	0	.	162
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207739189	207739189	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CR1	NM_000651	exon24	c.A3873G	p.Q1291Q	.	.	525	218	379	0	.	93
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113668402	113668402	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSMD3	NM_198123	exon18	c.T2985C	p.G995G	.	.	115	37	72	0	.	1132
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	489179	489184	+	In_Frame_Del	DEL	GGCACG	GGCACG	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	GGCACG	GGCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSNK2A1	NM_001895	exon2	c.12_17del	p.4_6del	.	.	204	37	143	0	.	791
CTAGE10P	220429	ucsc.edu	37	13	50467133	50467133	+	RNA	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	42	4	20	0	.	.
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49281716	49281716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CYSLTR2	NM_020377	exon1	c.A763G	p.I255V	.	.	49	15	25	0	.	278
DCTN4	51164	ucsc.edu;bcgsc.ca	37	5	150111050	150111050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DCTN4	NM_001135643	exon7	c.A560G	p.D187G	.	.	29	4	26	0	.	90
DNAH12	201625	bcgsc.ca	37	3	57357574	57357574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DNAH12	NM_178504	exon48	c.T7448C	p.L2483S	.	.	172	7	90	0	.	47
DNAJB4	11080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78479088	78479088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DNAJB4	NM_007034	exon2	c.G565A	p.D189N	.	.	108	46	59	0	.	226
DNM1L	10059	bcgsc.ca	37	12	32895649	32895649	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DNM1L	NM_012062	exon19	c.A2121G	p.A707A	.	.	109	5	111	0	.	92
DOPEY2	9980	bcgsc.ca	37	21	37602977	37602977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DOPEY2	NM_005128	exon14	c.A1895G	p.E632G	.	.	139	5	97	0	.	91
DPY19L2P1	554236	bcgsc.ca	37	7	35131521	35131521	+	RNA	SNP	G	G	A	rs200009436		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	308	18	182	6	G|0.999;A|0.001	.
DPY19L2P1	554236	bcgsc.ca	37	7	35131548	35131548	+	RNA	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	222	15	114	4	.	.
DPYSL3	1809	bcgsc.ca	37	5	146778644	146778644	+	Splice_Site	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DPYSL3	NM_001197294	exon12	c.1623+1G>A	.	.	.	83	4	82	0	.	91
DSC3	1825	bcgsc.ca	37	18	28611121	28611121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DSC3	NM_024423	exon3	c.T172C	p.F58L	.	.	74	4	51	0	.	94
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45440496	45440496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DUOX1	NM_017434	exon22	c.G2669C	p.C890S	.	.	147	68	126	0	.	142
EEF2K	29904	bcgsc.ca	37	16	22284965	22284965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	EEF2K	NM_013302	exon16	c.A1783G	p.T595A	.	.	83	4	55	0	.	856
ENG	2022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130587248	130587248	+	Silent	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ENG	NM_001114753	exon7	c.T822A	p.T274T	.	.	40	17	34	0	.	90
ENOX1	55068	bcgsc.ca	37	13	43810839	43810839	+	Silent	SNP	T	T	C	rs150329674		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ENOX1	NM_017993	exon15	c.A1647G	p.Q549Q	.	.	96	5	54	0	T|1.000;C|0.000	92
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50291319	50291319	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAIM2	NM_012306	exon4	c.G363A	p.V121V	.	.	178	69	136	0	.	230
FAM13B	51306	bcgsc.ca	37	5	137323165	137323165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001101800	exon9	c.A1031G	p.E344G	.	.	235	6	147	0	.	.
FAM83B	222584	bcgsc.ca	37	6	54735187	54735187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAM83B	NM_001010872	exon2	c.T143C	p.V48A	.	.	149	6	61	0	.	96
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144808725	144808725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAM83H	NM_198488	exon5	c.T2906G	p.L969R	.	.	59	24	34	0	.	92
FAT1	2195	bcgsc.ca	37	4	187524188	187524188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAT1	NM_005245	exon20	c.A11351G	p.E3784G	.	.	97	5	88	0	.	34
FGD4	121512	bcgsc.ca	37	12	32786557	32786557	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FGD4	NM_139241	exon15	c.A1836G	p.K612K	.	.	51	4	47	0	.	229
FRA10AC1	118924	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	95441348	95441348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FRA10AC1	NM_145246	exon11	c.G676T	p.E226X	.	.	37	6	35	0	.	90
FSIP2	401024	broad.mit.edu;bcgsc.ca	37	2	186673129	186673129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FSIP2	NM_173651	exon17	c.T19363C	p.S6455P	.	.	132	5	77	0	.	90
G3BP2	9908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76579227	76579227	+	Silent	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	G3BP2	NM_012297	exon8	c.T765G	p.P255P	.	.	43	29	57	0	.	153
GHDC	84514	bcgsc.ca	37	17	40345021	40345021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GHDC	NM_001142622	exon4	c.T290C	p.L97P	.	.	173	9	129	4	.	90
GLG1	2734	hgsc.bcm.edu	37	16	74566050	74566050	+	Missense_Mutation	SNP	G	G	A	rs201232267		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GLG1	NM_001145667	exon2	c.C440T	p.P147L	.	.	147	6	103	0	.	136
GLRA2	2742	bcgsc.ca	37	X	14592464	14592464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GLRA2	NM_001118885	exon4	c.T212C	p.V71A	.	.	222	6	155	0	.	131
GPI	2821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	34887542	34887542	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPI	NM_001184722	exon14	c.C1282A	p.R428R	.	.	109	32	74	0	.	228
GPR126	57211	bcgsc.ca	37	6	142723813	142723813	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR126	NM_198569	exon13	c.T1801C	p.L601L	.	.	76	4	33	0	.	91
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72363763	72363763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR142	NM_181790	exon1	c.C119T	p.S40F	.	.	108	34	90	0	.	93
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54081699	54081699	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR75	NM_006794	exon2	c.G195A	p.L65L	.	.	230	96	174	0	.	92
GSG2	83903	bcgsc.ca	37	17	3628503	3628503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GSG2	NM_031965	exon1	c.T1274C	p.V425A	.	.	116	5	135	0	.	297
GUSBP1	728411	bcgsc.ca	37	5	21482805	21482805	+	RNA	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	119	8	81	1	.	.
HIF3A	64344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46812017	46812017	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	HIF3A	NM_152795	exon5	c.G546A	p.K182K	.	.	67	22	43	0	.	228
HLTF	6596	bcgsc.ca	37	3	148765911	148765911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	HLTF	NM_139048	exon17	c.T1796C	p.L599P	.	.	86	4	45	0	.	659
ING1	3621	hgsc.bcm.edu;bcgsc.ca	37	13	111371870	111371870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ING1	NM_005537	exon2	c.A860G	p.K287R	.	.	55	4	43	0	.	515
IREB2	3658	broad.mit.edu	37	15	78780134	78780134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	IREB2	NM_004136	exon14	c.A1769G	p.D590G	.	.	176	6	94	0	.	90
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81234212	81234212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIAA1199	NM_018689	exon25	c.G3430T	p.A1144S	.	.	78	30	54	0	.	93
KIF13A	63971	bcgsc.ca	37	6	17794493	17794493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIF13A	NM_001105567	exon25	c.T3209C	p.L1070P	.	.	138	5	51	0	.	137
KIF13B	23303	bcgsc.ca	37	8	29013375	29013375	+	Splice_Site	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIF13B	NM_015254	exon15	c.1405-2A>G	.	.	.	75	4	73	0	.	22
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28971063	28971063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIF13B	NM_015254	exon32	c.C3847G	p.Q1283E	.	.	60	19	30	0	.	22
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97562045	97562045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	KLHL32,NS,carcinoma,+1	KLHL32	NM_052904	exon7	c.C1014A	p.H338Q	.	.	81	25	43	0	.	94
KRT83	3889	ucsc.edu;bcgsc.ca	37	12	52714864	52714864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KRT83	NM_002282	exon1	c.G256A	p.V86M	.	.	550	261	416	3	.	91
KRTAP13-4	284827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31802993	31802993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KRTAP13-4	NM_181600	exon1	c.C400A	p.P134T	.	.	193	92	127	0	.	90
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129571345	129571345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LAMA2	NM_000426	exon13	c.T1871C	p.M624T	.	.	97	60	53	0	.	162
LGALS9B	284194	broad.mit.edu	37	17	20363690	20363690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LGALS9B	NM_001042685	exon2	c.G106A	p.A36T	.	.	660	9	458	1	.	23
LGALS9B	284194	broad.mit.edu	37	17	20363711	20363711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LGALS9B	NM_001042685	exon2	c.T85C	p.F29L	.	.	604	11	439	2	.	23
LOC100287072	0	bcgsc.ca	37	17	20627908	20627908	+	RNA	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NR_073509	exon6	c.582-1G>A	.	.	.	264	93	186	0	.	.
LOC642236	0	bcgsc.ca	37	9	68455187	68455187	+	RNA	SNP	G	G	C	rs201230786		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	64	6	46	1	.	.
LRRC19	64922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	26995539	26995539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRC19	NM_022901	exon5	c.G1093T	p.E365X	.	.	92	39	56	0	.	514
LRRC2	79442	bcgsc.ca	37	3	46560526	46560526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRC2	NM_024512	exon9	c.T1094C	p.V365A	.	.	68	5	33	0	.	91
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204588961	204588961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRN2	NM_006338	exon3	c.G160T	p.D54Y	.	.	83	36	80	0	.	514
MAD2L1	4085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120982128	120982128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAD2L1	NM_002358	exon4	c.C346A	p.P116T	.	.	156	62	113	0	.	227
MAGI1	9223	bcgsc.ca	37	3	65376958	65376958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAGI1	NM_001033057	exon14	c.T2275C	p.S759P	.	.	157	27	132	3	.	661
MANSC1	54682	bcgsc.ca	37	12	12496193	12496193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MANSC1	NM_018050	exon2	c.T56C	p.L19P	.	.	56	4	75	1	.	90
MARCH11	441061	bcgsc.ca	37	5	16067860	16067860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001102562	exon4	c.A929G	p.K310R	.	.	52	4	37	0	.	.
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12978549	12978549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAST1	NM_014975	exon20	c.G2324C	p.R775P	.	.	55	13	41	0	.	523
MEX3C	51320	hgsc.bcm.edu;mdanderson.org	37	18	48723394	48723394	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MEX3C	NM_016626	exon1	c.G297T	p.G99G	.	.	14	7	12	0	.	659
MIS18BP1	55320	broad.mit.edu	37	14	45715960	45715960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MIS18BP1	NM_018353	exon2	c.A530G	p.D177G	.	.	181	8	90	0	.	90
MKI67IP	84365	ucsc.edu	37	2	122485127	122485127	+	RNA	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MKI67IP	.	.	.	.	.	.	47	15	41	0	.	90
MON1B	22879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77228317	77228317	+	Silent	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MON1B	NM_014940	exon4	c.G561T	p.R187R	.	.	90	37	46	0	.	90
MUC2	4583	broad.mit.edu	37	11	1092954	1092954	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MUC2	NM_002457	exon30	c.G4773A	p.T1591T	.	.	78	9	52	1	.	90
MUC2	4583	mdanderson.org	37	11	1093014	1093014	+	Silent	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MUC2	NM_002457	exon30	c.C4833G	p.T1611T	.	.	71	8	60	1	.	90
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113550088	113550088	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MUSK	NM_005592	exon13	c.1897delT	p.F633fs	.	.	124	52	91	0	.	1379
NASP	4678	hgsc.bcm.edu	37	1	46073373	46073373	+	Missense_Mutation	SNP	G	G	A	rs199792714	byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NASP	NM_002482	exon6	c.G790A	p.G264R	.	.	204	10	149	0	G|0.992;A|0.008	91
NBPF10	100132406	broad.mit.edu	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001039703	exon27	c.A3493T	p.I1165F	.	.	52	6	35	0	A|0.625;T|0.375	.
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183847561	183847561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP1	NM_205842	exon13	c.A1214G	p.D405G	.	.	208	93	109	0	.	92
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50190101	50190101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP5L	NM_001037806	exon8	c.G1542C	p.E514D	.	.	126	52	85	0	.	68
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124915190	124915190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCOR2	NM_006312	exon11	c.G1026T	p.K342N	.	.	85	43	63	0	.	229
NFXL1	152518	bcgsc.ca	37	4	47892692	47892692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NFXL1	NM_152995	exon12	c.A1481G	p.D494G	.	.	57	4	40	0	.	524
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26110007	26110007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NOS2	NM_000625	exon6	c.C593T	p.P198L	.	.	318	116	233	0	.	156
NPEPPS	9520	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45608887	45608887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NPEPPS	NM_006310	exon1	c.T221A	p.F74Y	.	.	242	71	188	0	.	90
NPY5R	4889	bcgsc.ca	37	4	164272478	164272478	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NPY5R	NM_006174	exon4	c.A1053G	p.R351R	.	.	79	7	36	0	.	523
NR2F1	7025	broad.mit.edu	37	5	92929524	92929524	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NR2F1	NM_005654	exon3	c.T1248C	p.P416P	.	.	94	5	61	0	.	227
NRK	203447	bcgsc.ca	37	X	105142693	105142693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NRK	NM_198465	exon8	c.T697C	p.S233P	.	.	62	4	47	1	.	630
ORM1	5004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	117086007	117086007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ORM1	NM_000607	exon2	c.A179T	p.Q60L	.	.	353	155	222	0	.	90
PABPC3	5042	bcgsc.ca	37	13	25671122	25671122	+	Silent	SNP	C	C	T	rs79072440	bycluster;byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PABPC3	NM_030979	exon1	c.C786T	p.Y262Y	.	.	157	15	91	1	C|0.999;T|0.001	72
PAPL	0	ucsc.edu	37	19	39592171	39592171	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001004318	exon11	c.A1107G	p.G369G	.	.	35	4	23	0	.	.
PARP4	143	mdanderson.org	37	13	25052321	25052321	+	Silent	SNP	A	A	G	rs149727830	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PARP4	NM_006437	exon13	c.T1542C	p.H514H	.	.	116	16	57	1	A|1.000;C|0.000	94
PCDHGA11	56105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140803121	140803121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_032091	exon1	c.A2327G	p.Y776C	.	.	153	54	129	1	.	.
PCLO	27445	bcgsc.ca	37	7	82581208	82581208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PCLO	NM_014510	exon5	c.A9061G	p.T3021A	.	.	54	4	42	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784756	82784756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PCLO	NM_014510	exon2	c.C1201A	p.P401T	.	.	209	73	145	0	.	29
PDE4A	5141	bcgsc.ca	37	19	10568711	10568711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PDE4A	NM_001111307	exon8	c.A1034G	p.N345S	.	.	96	5	79	1	.	523
PHF23	79142	bcgsc.ca	37	17	7139955	7139955	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PHF23	NM_024297	exon4	c.C291T	p.S97S	.	.	67	4	57	0	.	90
PHF8	23133	bcgsc.ca	37	X	54049261	54049261	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PHF8	NM_001184896	exon3	c.A222G	p.E74E	.	.	56	4	34	0	.	133
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23700573	23700573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PLK1	NM_005030	exon8	c.G1285C	p.D429H	.	.	226	29	135	0	.	766
POM121L4P	266697	ucsc.edu	37	22	21044156	21044156	+	RNA	SNP	C	C	A	rs76652509	byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	169	20	128	8	C|0.500;A|0.500	.
POM121L4P	266697	ucsc.edu	37	22	21044917	21044917	+	RNA	SNP	G	G	A	rs5760027	byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	.	.	.	79	13	56	4	G|0.962;A|0.038	.
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61909960	61909960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PRKCH	NM_006255	exon3	c.C559G	p.H187D	.	.	133	71	85	0	.	1063
PSPH	5723	broad.mit.edu	37	7	56085002	56085002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PSPH	NM_004577	exon6	c.G346A	p.V116I	.	.	563	7	378	1	.	92
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720811	89720812	+	Frame_Shift_Ins	INS	-	-	A	rs121913291		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTEN	NM_000314	exon8	c.962_963insA	p.T321fs	.	.	170	110	171	0	.	17735
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141684416	141684416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTK2	NM_005607	exon29	c.G2756A	p.S919N	.	.	76	29	75	0	.	1517
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47453376	47453376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTPN23	NM_015466	exon21	c.A3992T	p.E1331V	.	.	226	93	169	0	.	227
RAC2	5880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37627330	37627330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RAC2	NM_002872	exon5	c.A389G	p.K130R	.	.	330	127	241	1	.	723
RANBP6	26953	broad.mit.edu	37	9	6012658	6012658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RANBP6	NM_012416	exon1	c.A2950C	p.I984L	.	.	200	6	121	0	.	229
RAPGEF2	9693	bcgsc.ca	37	4	160252874	160252874	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RAPGEF2	NM_014247	exon9	c.T1185C	p.A395A	.	.	201	6	110	0	.	637
RHBDF2	79651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74473344	74473344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RHBDF2	NM_024599	exon8	c.T925A	p.S309T	.	.	70	22	49	0	.	90
RNF130	55819	broad.mit.edu	37	5	179390554	179390554	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RNF130	NM_018434	exon8	c.T1161C	p.F387F	.	.	185	6	132	2	.	227
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu	37	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	-	A	rs35810558		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ROCK1	NM_005406	exon4	c.363_364insT	p.F121fs	.	.	127	13	83	0	.	1026
RORB	6096	bcgsc.ca	37	9	77280464	77280464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RORB	NM_006914	exon7	c.T953C	p.V318A	.	.	87	4	44	0	.	229
RP1	6101	broad.mit.edu	37	8	55539736	55539736	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RP1	NM_006269	exon4	c.T3294C	p.I1098I	.	.	191	5	125	0	.	102
RP1	6101	broad.mit.edu	37	8	55542149	55542149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RP1	NM_006269	exon4	c.G5707A	p.E1903K	.	.	115	3	64	0	.	102
RPRD2	23248	broad.mit.edu	37	1	150430048	150430048	+	Splice_Site	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RPRD2	NM_015203	exon8	c.1153+2T>C	.	.	.	98	4	68	0	.	23
RRAGB	10325	bcgsc.ca	37	X	55745778	55745778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RRAGB	NM_016656	exon2	c.A124G	p.K42E	.	.	65	4	50	0	.	130
RUNX1T1	862	bcgsc.ca	37	8	92998380	92998380	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RUNX1T1	NM_001198679	exon9	c.T1428C	p.S476S	.	.	88	4	89	2	.	1196
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34109151	34109151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RYR3	NM_001036	exon75	c.G10591T	p.D3531Y	.	.	128	42	95	0	.	520
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62020305	62020305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SCN4A	NM_000334	exon23	c.T4169C	p.M1390T	.	.	394	152	359	0	.	93
SDR42E1	93517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	82033315	82033315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SDR42E1	NM_145168	exon3	c.A583G	p.R195G	.	.	128	6	105	0	.	90
SGOL2	151246	bcgsc.ca	37	2	201437302	201437302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SGOL2	NM_001160046	exon7	c.T2233C	p.F745L	.	.	89	4	44	0	.	94
SLC1A3	6507	broad.mit.edu;bcgsc.ca	37	5	36680561	36680561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC1A3	NM_004172	exon8	c.A1159G	p.T387A	.	.	86	5	52	0	.	90
SLC25A44	9673	bcgsc.ca	37	1	156169922	156169922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC25A44	NM_014655	exon2	c.A284G	p.E95G	.	.	231	9	175	0	.	91
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211749145	211749145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC30A1	NM_021194	exon2	c.A1109T	p.H370L	.	.	60	23	39	0	.	93
SLC38A9	153129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54952566	54952566	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC38A9	NM_173514	exon9	c.T734G	p.L245R	.	.	107	38	86	0	.	68
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92459662	92459662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLCO3A1	NM_013272	exon2	c.G620A	p.R207Q	.	.	122	50	109	0	.	91
SLTM	79811	broad.mit.edu;bcgsc.ca	37	15	59179713	59179713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLTM	NM_024755	exon18	c.A2402G	p.E801G	.	.	109	7	85	0	.	91
SMARCA2	6595	hgsc.bcm.edu	37	9	2039826	2039826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SMARCA2	NM_139045	exon4	c.C716A	p.P239Q	.	.	49	5	57	0	.	653
SMC1A	8243	bcgsc.ca	37	X	53410141	53410141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SMC1A	NM_006306	exon20	c.A3007G	p.M1003V	.	.	55	4	47	0	.	232
SON	6651	bcgsc.ca	37	21	34922310	34922310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SON	NM_032195	exon3	c.A773G	p.K258R	.	.	85	4	79	0	.	97
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39213099	39213099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SOS1	NM_005633	exon23	c.C3868T	p.P1290S	.	.	536	205	426	0	.	851
SOX17	64321	bcgsc.ca	37	8	55370920	55370920	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SOX17	NM_022454	exon1	c.T222C	p.A74A	.	.	126	6	87	0	.	946
SPATA31C1	441452	bcgsc.ca	37	9	90536040	90536040	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_001145124	exon4	c.T1218C	p.P406P	.	.	89	4	48	0	.	.
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35793440	35793440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEF2	NM_024867	exon32	c.G4734T	p.M1578I	.	.	202	71	161	0	.	26
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220354314	220354314	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEG	NM_005876	exon36	c.G8574A	p.A2858A	.	.	109	34	88	0	.	383
SPHKAP	80309	bcgsc.ca	37	2	228882551	228882551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPHKAP	NM_030623	exon7	c.A3019G	p.T1007A	.	.	88	4	66	0	.	167
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	91	24	65	1	A|0.000;C|0.697;T|0.303	45
SYBU	55638	broad.mit.edu	37	8	110588100	110588100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SYBU	NM_001099752	exon8	c.A1027G	p.T343A	.	.	169	4	126	0	.	227
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70604840	70604840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAF1	NM_004606	exon14	c.A2227G	p.T743A	.	.	104	82	74	0	.	900
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175217	143175217	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAS2R41	NM_176883	exon1	c.C252T	p.F84F	.	.	91	11	81	0	.	92
TAS2R7	50837	bcgsc.ca	37	12	10954839	10954839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAS2R7	NM_023919	exon1	c.A331G	p.I111V	.	.	58	5	57	0	.	91
TCF25	22980	bcgsc.ca	37	16	89940186	89940186	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TCF25	NM_014972	exon1	c.A111G	p.E37E	.	.	110	8	93	0	.	90
TF	7018	hgsc.bcm.edu;bcgsc.ca	37	3	133476713	133476713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TF	NM_001063	exon8	c.T971C	p.V324A	.	.	151	52	100	0	.	92
TF	7018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	133476711	133476712	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TF	NM_001063	exon8	c.969_970insG	p.K323fs	.	.	153	54	99	0	.	92
THOC5	8563	broad.mit.edu	37	22	29932705	29932705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	THOC5	NM_001002878	exon8	c.T622C	p.C208R	.	.	159	6	128	0	.	585
TMEM8C	389827	bcgsc.ca	37	9	136384125	136384125	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TMEM8C	NM_001080483	exon3	c.A270G	p.E90E	.	.	70	4	58	0	.	68
TNKS2	80351	bcgsc.ca	37	10	93617205	93617205	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TNKS2	NM_025235	exon24	c.A3012G	p.K1004K	.	.	69	5	67	0	.	541
TPR	7175	bcgsc.ca	37	1	186321214	186321214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TPR	NM_003292	exon19	c.A2363G	p.K788R	.	.	74	4	45	0	.	228
TRAPPC11	60684	bcgsc.ca	37	4	184618719	184618719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_021942	exon24	c.A2692G	p.K898E	.	.	175	5	122	0	.	.
TRIML1	339976	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	189065204	189065204	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TRIML1	NM_178556	exon5	c.T773A	p.L258X	.	.	79	31	85	0	.	156
TTC18	118491	bcgsc.ca	37	10	75107973	75107973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TTC18	NM_145170	exon5	c.A370G	p.T124A	.	.	57	4	72	0	.	92
TTC3	7267	broad.mit.edu	37	21	38505048	38505048	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TTC3	NM_001001894	exon17	c.T1425C	p.S475S	.	.	555	8	325	1	.	590
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216420124	216420124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USH2A	NM_007123	exon13	c.A2612T	p.K871I	.	.	236	86	157	0	.	115
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49153563	49153563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USP19	NM_001199160	exon10	c.G1388A	p.C463Y	.	.	177	80	100	0	.	663
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22120822	22120822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	VWA3A	NM_173615	exon7	c.G503A	p.G168E	.	.	55	18	33	0	.	1
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88259978	88259978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WAPAL	NM_015045	exon3	c.G1022A	p.G341D	.	.	69	46	67	0	.	91
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85711036	85711036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDFY3	NM_014991	exon22	c.C3512T	p.S1171L	.	.	113	82	139	1	.	93
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74943789	74943789	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDR59	NM_030581	exon15	c.A1416G	p.K472K	.	.	203	95	123	0	.	92
YEATS2	55689	broad.mit.edu	37	3	183439905	183439905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	YEATS2	NM_018023	exon5	c.C518A	p.P173Q	.	.	76	8	76	1	.	138
YIF1B	90522	bcgsc.ca	37	19	38799433	38799433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	YIF1B	NM_001039672	exon5	c.A538G	p.R180G	.	.	54	4	31	0	.	68
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71592562	71592563	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ZNF638	NM_014497	exon6	c.1721_1722insA	p.R574fs	.	.	65	23	31	0	.	94
ZRSR2	8233	bcgsc.ca	37	X	15840872	15840872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ZRSR2	NM_005089	exon11	c.A956G	p.Q319R	.	.	84	5	73	0	.	133
NBPF10	100132406	broad.mit.edu	37	1	145293511	145293512	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	AG	AG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	.	.	.	p.R36V	.	.	.	.	.	.	.	
