Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67183861	67183861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ABCA10	NM_080282	exon20	c.T2291A	p.F764Y	.	.	162	35	147	1	.	93
ABCA10	10349	hgsc.bcm.edu	37	17	67190119	67190119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ABCA10	NM_080282	exon14	c.A1357T	p.I453F	.	.	146	9	112	0	.	93
ABHD4	63874	hgsc.bcm.edu	37	14	23072501	23072501	+	Nonsense_Mutation	SNP	C	C	T	rs148116289		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ABHD4	NM_022060	exon3	c.C319T	p.R107X	.	.	87	4	53	0	C|1.000;T|0.000	90
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132337601	132337601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACAD11	NM_032169	exon11	c.G1291A	p.E431K	.	.	238	63	202	0	.	91
ACIN1	22985	hgsc.bcm.edu	37	14	23548777	23548777	+	Silent	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACIN1	NM_001164814	exon6	c.A1941T	p.S647S	.	.	240	15	148	0	.	156
ACIN1	22985	hgsc.bcm.edu	37	14	23549875	23549875	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACIN1	NM_001164814	exon6	c.A843T	p.E281D	.	.	210	10	141	0	.	156
ACIN1	22985	hgsc.bcm.edu	37	14	23549881	23549881	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACIN1	NM_001164814	exon6	c.G837A	p.E279E	.	.	202	20	138	0	.	156
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	rs141522105	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACIN1	NM_001164814	exon6	c.G822A	p.E274E	.	.	181	18	118	0	C|1.000;T|0.000	156
ACIN1	22985	hgsc.bcm.edu	37	14	23549902	23549902	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACIN1	NM_001164814	exon6	c.A816G	p.E272E	.	.	182	11	118	0	.	156
ACOXL	55289	mdanderson.org	37	2	111875339	111875339	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACOXL	NM_001142807	exon18	c.G1689A	p.P563P	.	.	26	4	37	0	.	90
ACRV1	56	hgsc.bcm.edu;bcgsc.ca	37	11	125542541	125542541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACRV1	NM_001612	exon4	c.A745G	p.T249A	.	.	88	4	76	0	.	90
ACTN2	88	hgsc.bcm.edu	37	1	236906307	236906307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	ACTN2,NS,carcinoma,-1	ACTN2	NM_001103	exon11	c.A1219G	p.R407G	.	.	62	3	48	0	.	95
ADAMTS1	9510	hgsc.bcm.edu;bcgsc.ca	37	21	28212774	28212774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ADAMTS1	NM_006988	exon5	c.T1486C	p.S496P	.	.	70	4	64	0	.	272
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64748641	64748641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ADAMTS6	NM_197941	exon5	c.G736A	p.V246M	.	.	324	58	251	0	.	226
AGL	178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100340249	100340249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AGL	NM_000644	exon8	c.G965A	p.R322K	.	.	64	9	57	1	.	92
AHNAK2	113146	broad.mit.edu	37	14	105413563	105413563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AHNAK2	NM_138420	exon7	c.C8225T	p.P2742L	.	.	183	4	113	0	.	47
AMPD3	272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10503698	10503698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AMPD3	NM_000480	exon4	c.G542T	p.R181L	.	.	69	10	51	0	.	291
ANKRD20A9P	284232	ucsc.edu	37	13	19442402	19442402	+	RNA	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	.	.	.	24	9	22	0	.	.
ANXA13	312	hgsc.bcm.edu;broad.mit.edu	37	8	124705521	124705521	+	Nonsense_Mutation	SNP	C	C	T	rs146521013	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ANXA13	NM_001003954	exon9	c.G681A	p.W227X	.	.	166	9	90	0	C|1.000;A|0.000	93
APLP2	334	hgsc.bcm.edu	37	11	129991652	129991652	+	Missense_Mutation	SNP	T	T	G	rs1063201		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	APLP2	NM_001243299	exon5	c.T690G	p.D230E	.	.	150	9	111	0	.	93
APLP2	334	hgsc.bcm.edu	37	11	129991658	129991658	+	Missense_Mutation	SNP	G	G	T	rs76279939	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	APLP2	NM_001243299	exon5	c.G696T	p.E232D	.	.	144	12	104	0	G|0.994;T|0.006	93
APOB	338	broad.mit.edu	37	2	21246501	21246501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	APOB	NM_000384	exon17	c.A2500G	p.N834D	.	.	108	4	90	0	.	175
AQP5	362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50357929	50357929	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AQP5	NM_001651	exon3	c.G583C	p.V195L	.	.	107	15	82	0	.	90
ARHGEF17	9828	bcgsc.ca	37	11	73076794	73076794	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ARHGEF17	NM_014786	exon20	c.C5797T	p.L1933L	.	.	54	4	77	0	.	227
ARHGEF18	23370	mdanderson.org	37	19	7504984	7504984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ARHGEF18	NM_001130955	exon1	c.C158T	p.A53V	.	.	13	3	22	1	.	228
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522125	157522125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ARID1B	NM_020732	exon18	c.C4397A	p.A1466E	.	.	126	16	69	0	.	154
ARSG	22901	hgsc.bcm.edu	37	17	66352820	66352820	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ARSG	NM_001267727	exon6	c.A579G	p.R193R	.	.	110	5	81	0	.	91
ASMTL	8623	ucsc.edu	37	X	1546874	1546874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ASMTL	NM_004192	exon7	c.C650A	p.P217Q	.	.	28	3	29	0	.	62
ASPN	54829	hgsc.bcm.edu	37	9	95237024	95237024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ASPN	NM_001193335	exon2	c.G156T	p.E52D	.	.	150	1	88	0	.	514
ATAD2	29028	hgsc.bcm.edu	37	8	124382155	124382155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATAD2	NM_014109	exon7	c.T837A	p.D279E	.	.	210	20	135	0	.	92
ATAD2	29028	hgsc.bcm.edu	37	8	124382158	124382158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATAD2	NM_014109	exon7	c.A834T	p.E278D	.	.	204	15	133	0	.	92
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980414	23980414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATAD2B	NM_017552	exon25	c.C3952A	p.P1318T	.	.	219	53	186	0	.	68
ATAD5	79915	hgsc.bcm.edu	37	17	29161960	29161960	+	Missense_Mutation	SNP	G	G	T	rs80170526		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATAD5	NM_024857	exon2	c.G861T	p.M287I	.	.	194	5	166	0	.	93
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182566270	182566270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATP11B	NM_014616	exon10	c.C776T	p.A259V	.	.	232	59	190	0	.	93
ATP13A2	23400	mdanderson.org	37	1	17320242	17320242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATP13A2	NM_022089	exon16	c.G1631A	p.R544H	.	.	17	3	52	1	.	93
AURKC	6795	hgsc.bcm.edu	37	19	57743110	57743110	+	Missense_Mutation	SNP	T	T	C	rs200296015		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AURKC	NM_001015878	exon2	c.T59C	p.L20S	.	.	78	4	64	0	T|1.000;C|0.000	1560
B3GNTL1	146712	hgsc.bcm.edu	37	17	80972391	80972391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	B3GNTL1	NM_001009905	exon5	c.A347G	p.D116G	.	.	118	5	73	0	.	92
B4GALNT3	283358	hgsc.bcm.edu	37	12	653566	653566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	B4GALNT3	NM_173593	exon4	c.T413C	p.L138P	.	.	46	5	32	0	.	92
BACH1	571	broad.mit.edu	37	21	30714745	30714745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BACH1	NM_206866	exon5	c.A1802G	p.K601R	.	.	122	5	122	1	.	92
BCYRN1	618	hgsc.bcm.edu	37	X	70445066	70445069	+	RNA	DEL	TGTT	TGTT	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	.	.	.	121	42	123	0	.	.
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	32613893	32613893	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BIRC6	NM_016252	exon4	c.721delA	p.K241fs	.	.	173	30	171	0	.	233
BMP5	653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55639030	55639030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BMP5	NM_021073	exon4	c.A844G	p.N282D	.	.	230	32	175	0	.	516
BRCA2	675	broad.mit.edu	37	13	32953604	32953604	+	Missense_Mutation	SNP	G	G	A	rs59004709		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BRCA2	NM_000059	exon22	c.G8905A	p.V2969M	.	.	240	6	187	0	G|0.998;A|0.002	3153
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105716119	105716119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BTBD6	NM_033271	exon5	c.G568A	p.V190I	.	.	99	31	50	0	.	90
C11orf74	119710	hgsc.bcm.edu;bcgsc.ca	37	11	36631742	36631742	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C11orf74	NM_138787	exon2	c.G89G	p.G30G	.	.	81	4	57	0	.	68
C12orf44	60673	hgsc.bcm.edu	37	12	52470885	52470885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C12orf44	NM_021934	exon4	c.T568C	p.Y190H	.	.	97	4	72	0	.	90
C15orf43	145645	broad.mit.edu;bcgsc.ca	37	15	45270751	45270751	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C15orf43	NM_152448	exon7	c.C588T	p.T196T	.	.	465	16	404	0	.	90
C21orf33	8209	bcgsc.ca	37	21	45564772	45564772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C21orf33	NM_004649	exon7	c.T748C	p.Y250H	.	.	49	4	42	0	.	91
C2orf44	80304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24261849	24261849	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C2orf44	NM_025203	exon2	c.G516A	p.V172V	.	.	83	21	77	0	.	154
C7orf10	79783	mdanderson.org	37	7	40174657	40174657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C7orf10	NM_001193313	exon1	c.G59T	p.R20I	.	.	10	2	15	0	.	24
CACNA1B	774	ucsc.edu;mdanderson.org	37	9	140991051	140991051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNA1B	NM_001243812	exon36	c.A5210G	p.D1737G	.	.	83	8	69	2	.	138
CACNA1S	779	broad.mit.edu	37	1	201031628	201031628	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNA1S	NM_000069	exon23	c.G2868A	p.R956R	.	.	50	3	51	0	.	94
CACNA2D2	9254	hgsc.bcm.edu	37	3	50413239	50413239	+	Splice_Site	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNA2D2	NM_001174051	exon21	c.1845+1G>A	.	.	.	76	4	58	0	.	278
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37341067	37341067	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNB1	NM_199247	exon8	c.C834A	p.I278I	.	.	131	23	89	0	.	154
CALHM2	51063	hgsc.bcm.edu	37	10	105209279	105209279	+	Silent	SNP	T	T	C	rs201668640		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CALHM2	NM_015916	exon3	c.A420G	p.S140S	.	.	55	4	60	0	T|0.999;C|0.001	91
CAPN11	11131	hgsc.bcm.edu	37	6	44148727	44148727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CAPN11	NM_007058	exon18	c.T1862C	p.L621P	.	.	98	4	56	0	.	136
CASR	846	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	121980604	121980604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CASR	NM_001178065	exon4	c.A722T	p.E241V	.	.	221	20	182	0	.	97
CCDC34	91057	hgsc.bcm.edu	37	11	27384473	27384473	+	Missense_Mutation	SNP	A	A	C	rs77142757		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CCDC34	NM_030771	exon1	c.T269G	p.V90G	.	.	98	13	116	0	A|1.000;C|0.000	90
CCDC73	493860	broad.mit.edu	37	11	32635765	32635765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CCDC73	NM_001008391	exon16	c.A2099C	p.N700T	.	.	202	5	167	0	.	91
CCDC77	84318	hgsc.bcm.edu	37	12	520926	520926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CCDC77	NM_032358	exon4	c.T52C	p.S18P	.	.	77	4	56	0	.	91
CDC25B	994	broad.mit.edu	37	20	3783819	3783819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CDC25B	NM_021873	exon13	c.G1322C	p.R441T	.	.	144	5	121	0	.	849
CDC27	996	hgsc.bcm.edu	37	17	45232068	45232068	+	Silent	SNP	A	A	G	rs74710570		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CDC27	NM_001114091	exon8	c.T927C	p.D309D	.	.	101	5	50	0	.	291
CDKN2AIP	55602	hgsc.bcm.edu	37	4	184367561	184367561	+	Missense_Mutation	SNP	G	G	T	rs201501817		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CDKN2AIP	NM_017632	exon3	c.G724T	p.A242S	.	.	119	9	106	0	G|0.989;T|0.011	90
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46794440	46794440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CELSR1	NM_014246	exon11	c.G5507T	p.G1836V	.	.	71	22	97	0	.	525
CHMP5	51510	broad.mit.edu	37	9	33266097	33266097	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CHMP5	NM_016410	exon2	c.A159G	p.R53R	.	.	97	4	82	2	.	91
CLCA4	22802	hgsc.bcm.edu	37	1	87045908	87045908	+	Silent	SNP	T	T	A	rs77594462		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CLCA4	NM_012128	exon14	c.T2640A	p.T880T	.	.	241	26	187	0	.	92
CLCN2	1181	bcgsc.ca	37	3	184072355	184072355	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CLCN2	NM_004366	exon14	c.T1488C	p.P496P	.	.	95	5	91	1	.	90
CLEC18B	497190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	74452060	74452060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CLEC18B	NM_001011880	exon3	c.C353G	p.A118G	.	.	300	79	403	2	.	90
CNPY4	245812	hgsc.bcm.edu	37	7	99722425	99722425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CNPY4	NM_152755	exon6	c.G661C	p.E221Q	.	.	54	5	37	0	.	22
CNTLN	54875	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	17409335	17409335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CNTLN	NM_017738	exon16	c.T2660C	p.I887T	.	.	295	20	234	1	.	91
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228012135	228012135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COL4A4	NM_000092	exon2	c.G65A	p.G22D	.	.	56	8	62	0	.	142
COL4A6	1288	hgsc.bcm.edu	37	X	107418370	107418370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COL4A6	NM_001847	exon30	c.A2909G	p.D970G	.	.	106	5	122	0	.	199
COL5A1	1289	hgsc.bcm.edu	37	9	137593180	137593180	+	Splice_Site	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COL5A1	NM_000093	exon4	c.654+1G>A	.	.	.	90	3	68	0	.	524
COLEC11	78989	hgsc.bcm.edu	37	2	3652045	3652045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COLEC11	NM_001255985	exon3	c.G157A	p.V53I	.	.	83	4	89	0	.	90
COPS5	10987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67974167	67974167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COPS5	NM_006837	exon1	c.C65T	p.A22V	.	.	92	7	71	0	.	660
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	131624109	131624109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CPNE4	NM_130808	exon2	c.A179T	p.E60V	.	.	133	27	126	0	.	92
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145634528	145634528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CPSF1	NM_013291	exon2	c.C15A	p.Y5X	.	.	30	8	42	0	.	91
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75927121	75927121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CRISPLD1	NM_031461	exon6	c.G701A	p.G234D	.	.	143	31	141	0	.	91
CRYBA4	1413	hgsc.bcm.edu	37	22	27026346	27026346	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CRYBA4	NM_001886	exon6	c.T486C	p.Y162Y	.	.	89	4	98	0	.	90
CSMD2	114784	hgsc.bcm.edu	37	1	34006774	34006774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CSMD2	NM_052896	exon58	c.G8981A	p.C2994Y	.	.	123	5	117	0	.	103
CSN3	1448	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	71115098	71115098	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CSN3	NM_005212	exon4	c.T471C	p.T157T	.	.	115	12	77	1	.	93
CTRL	1506	hgsc.bcm.edu	37	16	67964673	67964673	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CTRL	NM_001907	exon4	c.C274T	p.R92X	.	.	80	4	86	0	.	90
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148456419	148456422	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CUL1	NM_003592	exon5	c.507_510del	p.169_170del	.	.	184	29	125	0	.	226
CWF19L1	55280	hgsc.bcm.edu	37	10	101993050	101993050	+	Silent	SNP	G	G	A	rs142671230		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CWF19L1	NM_018294	exon14	c.C1551T	p.D517D	.	.	72	4	65	0	G|1.000;A|0.000	90
CYP26B1	56603	hgsc.bcm.edu	37	2	72359542	72359542	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CYP26B1	NM_019885	exon6	c.G1353A	p.L451L	.	.	93	4	94	0	.	92
DAXX	1616	broad.mit.edu	37	6	33288978	33288978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DAXX	NM_001141970	exon3	c.G610A	p.E204K	.	.	114	3	70	0	.	731
DCAF6	55827	hgsc.bcm.edu	37	1	168034975	168034975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DCAF6	NM_001198956	exon19	c.T2587C	p.F863L	.	.	87	4	63	0	.	516
DDX31	64794	broad.mit.edu	37	9	135487493	135487493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DDX31	NM_022779	exon19	c.A2290G	p.R764G	.	.	110	4	101	1	.	226
DDX54	79039	mdanderson.org	37	12	113601897	113601897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DDX54	NM_024072	exon15	c.A1913G	p.E638G	.	.	17	3	16	1	.	227
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44612257	44612257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DDX56	NM_001257189	exon4	c.G470T	p.R157L	.	.	209	51	133	0	.	227
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	49936572	49936572	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DEFB113	NM_001037729	exon2	c.A67T	p.K23X	.	.	97	21	99	0	.	90
DEFB128	245939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	168643	168643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DEFB128	NM_001037732	exon2	c.G166A	p.D56N	.	.	459	108	321	2	.	135
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	.	.	62	6	43	0	.	69
DENND4C	55667	broad.mit.edu;bcgsc.ca	37	9	19346399	19346399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DENND4C	NM_017925	exon22	c.A3485G	p.D1162G	.	.	189	7	148	1	.	92
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95556981	95556981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DICER1	NM_030621	exon28	c.G5623A	p.D1875N	.	.	326	118	211	0	.	961
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225525167	225525167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DNAH14	NM_001373	exon65	c.C10001T	p.A3334V	.	.	331	59	283	0	.	23
DNAH2	146754	hgsc.bcm.edu	37	17	7674169	7674169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DNAH2	NM_020877	exon26	c.A4280G	p.D1427G	.	.	122	6	113	0	.	102
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84932627	84932627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DNAH6	NM_001370	exon52	c.C8483A	p.A2828E	.	.	105	19	65	0	.	69
DOCK1	1793	hgsc.bcm.edu	37	10	129172467	129172467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	DOCK1,NS,carcinoma,0	DOCK1	NM_001380	exon35	c.G3601A	p.V1201I	.	.	66	3	70	0	.	698
DOCK4	9732	hgsc.bcm.edu	37	7	111381259	111381259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DOCK4	NM_014705	exon46	c.A4904G	p.Y1635C	.	.	95	4	71	0	.	26
DOK5	55816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	53226977	53226977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DOK5	NM_018431	exon6	c.A650C	p.E217A	.	.	171	20	143	0	.	227
DSE	29940	hgsc.bcm.edu;broad.mit.edu	37	6	116757465	116757465	+	Missense_Mutation	SNP	G	G	C	rs141851816	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DSE	NM_001080976	exon6	c.G1834C	p.G612R	.	.	135	6	52	0	G|1.000;A|0.000	91
DSPP	1834	hgsc.bcm.edu	37	4	88536553	88536553	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DSPP	NM_014208	exon5	c.C2739T	p.D913D	.	.	243	13	172	0	.	90
DSPP	1834	hgsc.bcm.edu	37	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	.	.	227	21	204	0	A|0.500;C|0.500	90
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103027464	103027464	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DYNC2H1	NM_001377	exon26	c.A4092G	p.E1364E	.	.	81	4	67	0	.	68
ECE1	1889	broad.mit.edu;bcgsc.ca	37	1	21599363	21599363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ECE1	NM_001397	exon4	c.A322G	p.T108A	.	.	165	7	131	2	.	93
EDEM3	80267	mdanderson.org	37	1	184723729	184723729	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EDEM3	NM_025191	exon1	c.C52T	p.R18X	.	.	17	3	30	0	.	91
EFHA1	221154	hgsc.bcm.edu	37	13	22140947	22140947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EFHA1	NM_152726	exon2	c.A347G	p.E116G	.	.	80	4	57	0	.	90
EGLN3	112399	broad.mit.edu	37	14	34400366	34400366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EGLN3	NM_022073	exon2	c.A413G	p.N138S	.	.	164	4	85	0	.	226
EHBP1L1	254102	hgsc.bcm.edu	37	11	65357652	65357652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EHBP1L1	NM_001099409	exon15	c.A4154G	p.E1385G	.	.	90	5	53	0	.	69
EIF4E	1977	mdanderson.org	37	4	99850111	99850111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EIF4E	NM_001130678	exon1	c.A13G	p.T5A	.	.	8	3	55	0	.	1270
EME1	146956	hgsc.bcm.edu	37	17	48452982	48452982	+	Missense_Mutation	SNP	C	C	A	rs75511911		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EME1	NM_152463	exon2	c.C413A	p.P138H	.	.	172	8	129	0	.	227
EPHB6	2051	hgsc.bcm.edu	37	7	142562077	142562077	+	Silent	SNP	T	T	C	rs78315767		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EPHB6	NM_004445	exon7	c.T519C	p.S173S	.	.	74	6	74	0	.	1489
EPHB6	2051	hgsc.bcm.edu	37	7	142562080	142562080	+	Silent	SNP	T	T	C	rs143416563	by1000genomes	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EPHB6	NM_004445	exon7	c.T522C	p.S174S	.	.	73	4	73	0	T|0.996;C|0.004	1489
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	144940354	144940354	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EPPK1	NM_031308	exon1	c.C7068T	p.R2356R	.	.	22	10	23	0	.	25
ERCC4	2072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14041704	14041704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ERCC4	NM_005236	exon11	c.T2251C	p.Y751H	.	.	85	33	82	1	.	665
EVC2	132884	hgsc.bcm.edu	37	4	5642500	5642500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EVC2	NM_147127	exon10	c.A1211G	p.K404R	.	.	141	6	115	0	.	155
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50281167	50281167	+	Splice_Site	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAIM2	NM_012306	exon12	c.801+2T>A	.	.	.	47	10	32	0	.	230
FAM157A	728262	hgsc.bcm.edu	37	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145248	exon2	c.G243A	p.Q81Q	.	.	213	26	191	0	.	.
FAM186A	121006	broad.mit.edu	37	12	50746068	50746068	+	Missense_Mutation	SNP	C	C	T	rs200850332		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAM186A	NM_001145475	exon4	c.G4547A	p.G1516E	.	.	78	3	72	1	.	68
FAM189B	10712	hgsc.bcm.edu	37	1	155223732	155223732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAM189B	NM_006589	exon4	c.T431C	p.L144P	.	.	95	6	57	0	.	154
FAM207A	85395	hgsc.bcm.edu	37	21	46380029	46380029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_058190	exon3	c.A298G	p.T100A	.	.	62	4	69	0	.	.
FAM208A	23272	broad.mit.edu	37	3	56661104	56661104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001112736	exon21	c.T4100C	p.V1367A	.	.	213	5	200	0	.	.
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56680996	56680996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001112736	exon14	c.C1769T	p.S590L	.	.	241	31	201	0	.	.
FAM5C	339479	broad.mit.edu	37	1	190067328	190067328	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAM5C	NM_199051	exon8	c.A2121G	p.R707R	.	.	264	5	234	0	.	228
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	49	11	34	0	.	.
FAP	2191	hgsc.bcm.edu	37	2	163031427	163031427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAP	NM_004460	exon22	c.T1919C	p.L640P	.	.	93	4	86	0	.	93
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616495	92616495	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAT3	NM_001008781	exon23	c.C12873A	p.A4291A	.	.	25	10	36	0	.	73
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150884642	150884642	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FATE1	NM_033085	exon1	c.A51G	p.A17A	.	.	146	39	175	0	.	131
FBF1	85302	hgsc.bcm.edu	37	17	73915902	73915902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FBF1	NM_001080542	exon19	c.G1940A	p.R647Q	.	.	86	4	74	0	.	205
FCAMR	83953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207133090	207133090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FCAMR	NM_001170631	exon7	c.A1507G	p.M503V	.	.	88	23	93	0	.	91
FEV	54738	hgsc.bcm.edu;broad.mit.edu	37	2	219849754	219849754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FEV	NM_017521	exon1	c.A44G	p.Y15C	.	.	73	4	48	0	.	846
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151815446	151815446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GABRQ	NM_018558	exon4	c.A344C	p.K115T	.	.	149	61	179	0	.	133
GALNT3	2591	broad.mit.edu	37	2	166616055	166616055	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GALNT3	NM_004482	exon5	c.A864G	p.E288E	.	.	111	4	115	1	.	92
GBF1	8729	hgsc.bcm.edu	37	10	104118303	104118303	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GBF1	NM_001199379	exon10	c.T828C	p.S276S	.	.	74	4	74	0	.	91
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104125298	104125298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GBF1	NM_001199378	exon18	c.A2251G	p.M751V	.	.	117	6	131	0	.	91
GFM2	84340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74037421	74037421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GFM2	NM_032380	exon11	c.A863G	p.D288G	.	.	420	97	327	1	.	90
GFM2	84340	hgsc.bcm.edu	37	5	74021852	74021852	+	Missense_Mutation	SNP	A	A	T	rs76339998	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GFM2	NM_032380	exon18	c.T1826A	p.F609Y	.	.	125	13	100	0	A|0.963;T|0.037	90
GFM2	84340	hgsc.bcm.edu	37	5	74021855	74021855	+	Missense_Mutation	SNP	T	T	A	rs145997856	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GFM2	NM_032380	exon18	c.A1823T	p.E608V	.	.	122	10	102	0	T|1.000;A|0.000	90
GLA	2717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100658874	100658874	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GLA	NM_000169	exon2	c.C294A	p.P98P	.	.	99	36	135	0	.	130
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816819	75816819	+	Missense_Mutation	SNP	G	G	C	rs77365041	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GLIPR1L2	NM_152436	exon4	c.G720C	p.K240N	.	.	89	5	110	0	G|0.872;C|0.128	91
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816822	75816822	+	Silent	SNP	A	A	G	rs75261424		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GLIPR1L2	NM_152436	exon4	c.A723G	p.K241K	.	.	90	5	109	0	.	91
GNL3	26354	hgsc.bcm.edu	37	3	52727767	52727767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GNL3	NM_014366	exon13	c.G1444C	p.E482Q	.	.	225	10	200	0	.	90
GOLGA2	2801	hgsc.bcm.edu;mdanderson.org	37	9	131020812	131020812	+	Missense_Mutation	SNP	C	C	A	rs143073995	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GOLGA2	NM_004486	exon21	c.G2130T	p.E710D	.	.	42	8	32	0	C|0.990;A|0.010	91
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	.	.	306	2	223	0	A|0.333;C|0.333;G|0.333	91
GPR132	29933	hgsc.bcm.edu;bcgsc.ca	37	14	105517686	105517686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR132	NM_013345	exon4	c.T788A	p.L263H	.	.	193	41	59	0	.	92
GPR132	29933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105517685	105517686	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR132	NM_013345	exon4	c.789_790insA	p.L263fs	.	.	193	39	59	0	.	92
GPR133	283383	mdanderson.org	37	12	131590364	131590364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR133	NM_198827	exon17	c.T1841C	p.V614A	.	.	9	2	14	0	.	191
GPSM1	26086	mdanderson.org	37	9	139250948	139250948	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPSM1	NM_001145638	exon13	c.C1767T	p.H589H	.	.	16	3	44	1	.	90
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123489856	123489856	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRAMD1B	NM_020716	exon19	c.2051delC	p.S684fs	.	.	51	14	50	0	.	69
GRM3	2913	broad.mit.edu	37	7	86479776	86479776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRM3	NM_000840	exon5	c.T2482C	p.F828L	.	.	195	5	149	0	.	528
GRM3	2913	broad.mit.edu;bcgsc.ca	37	7	86469096	86469096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRM3	NM_000840	exon4	c.T2266C	p.F756L	.	.	135	6	86	1	.	528
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72667574	72667574	+	RNA	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	.	.	.	1822	64	1311	1	.	.
HEATR2	54919	broad.mit.edu	37	7	814647	814647	+	Missense_Mutation	SNP	G	G	A	rs150657745		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HEATR2	NM_017802	exon11	c.G2087A	p.R696Q	.	.	174	4	101	0	G|1.000;A|0.000	69
HEMK1	51409	hgsc.bcm.edu	37	3	50614592	50614592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HEMK1	NM_016173	exon5	c.T524C	p.L175P	.	.	69	4	73	0	.	278
HENMT1	113802	broad.mit.edu	37	1	109193768	109193768	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HENMT1	NM_144584	exon6	c.T462C	p.S154S	.	.	156	5	140	1	.	93
HIBCH	26275	bcgsc.ca	37	2	191073634	191073634	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HIBCH	NM_014362	exon13	c.T1017C	p.G339G	.	.	85	5	67	1	.	90
HIST1H4K	8362	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27799271	27799271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HIST1H4K	NM_003541	exon1	c.G35T	p.G12V	.	.	317	53	275	1	.	90
HMHB1	57824	broad.mit.edu	37	5	143200133	143200133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HMHB1	NM_021182	exon2	c.A126G	p.X42W	.	.	247	5	218	1	.	90
HPS1	3257	hgsc.bcm.edu;broad.mit.edu	37	10	100179909	100179909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HPS1	NM_000195	exon18	c.T1750C	p.S584P	.	.	75	4	69	0	.	91
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186383833	186383833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HRG	NM_000412	exon1	c.A13G	p.I5V	.	.	111	26	106	0	.	91
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22159859	22159872	+	Frame_Shift_Del	DEL	AAGTAGGGCACCAC	AAGTAGGGCACCAC	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	AAGTAGGGCACCAC	AAGTAGGGCACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HSPG2	NM_005529	exon80	c.10984_10997del	p.3662_3666del	.	.	108	10	85	0	.	141
HSPH1	10808	broad.mit.edu;bcgsc.ca	37	13	31724175	31724175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HSPH1	NM_006644	exon8	c.G1053T	p.K351N	.	.	254	9	218	0	.	90
IFT172	26160	hgsc.bcm.edu;bcgsc.ca	37	2	27679434	27679434	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IFT172	NM_015662	exon30	c.A3315G	p.R1105R	.	.	81	4	74	0	.	154
IGDCC3	9543	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	65621829	65621829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IGDCC3	NM_004884	exon13	c.C2104T	p.R702W	.	.	39	6	28	1	.	93
IGFN1	91156	hgsc.bcm.edu	37	1	201182025	201182025	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IGFN1	NM_001164586	exon12	c.A8004G	p.P2668P	.	.	95	4	70	0	.	71
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42176090	42176090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IKBKB	NM_001556	exon13	c.C1261G	p.L421V	.	.	77	12	100	0	.	1164
IL1F10	84639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113831957	113831957	+	Silent	SNP	G	G	T	rs199770962		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IL1F10	NM_173161	exon3	c.G84T	p.L28L	.	.	140	11	135	0	G|0.999;T|0.001	91
IQUB	154865	broad.mit.edu	37	7	123097538	123097538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IQUB	NM_178827	exon12	c.T2090C	p.V697A	.	.	164	5	135	0	.	156
ISL1	3670	hgsc.bcm.edu	37	5	50683549	50683549	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ISL1	NM_002202	exon3	c.T444C	p.S148S	.	.	99	4	107	0	.	515
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56088716	56088716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ITGA7	NM_001144996	exon15	c.G2054A	p.G685E	.	.	61	6	49	0	.	229
ITGA7	3679	mdanderson.org	37	12	56078883	56078883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ITGA7	NM_001144996	exon25	c.G3385A	p.E1129K	.	.	12	3	15	0	.	229
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65335078	65335078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	JAK1	NM_002227	exon6	c.A563T	p.E188V	.	.	123	35	100	0	.	3900
KAT6B	23522	hgsc.bcm.edu	37	10	76781899	76781899	+	Silent	SNP	A	A	G	rs146315000		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_012330	exon16	c.A3282G	p.E1094E	.	.	108	14	90	0	A|1.000;G|0.000	.
KAZN	23254	hgsc.bcm.edu	37	1	15287300	15287300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KAZN	NM_015209	exon2	c.C347T	p.S116L	.	.	85	5	51	0	.	91
KCND1	3750	hgsc.bcm.edu;bcgsc.ca	37	X	48823420	48823420	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCND1	NM_004979	exon2	c.A1215G	p.P405P	.	.	88	6	82	0	.	133
KCND2	3751	broad.mit.edu	37	7	119915354	119915354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCND2	NM_012281	exon1	c.A668G	p.E223G	.	.	158	5	105	2	.	517
KCNK9	51305	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	140630800	140630800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCNK9	NM_016601	exon2	c.C826T	p.P276S	.	.	33	8	44	1	.	93
KCNRG	283518	broad.mit.edu	37	13	50594459	50594459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCNRG	NM_173605	exon2	c.A688G	p.T230A	.	.	227	5	154	1	.	90
KCTD8	386617	bcgsc.ca	37	4	44450158	44450158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCTD8	NM_198353	exon1	c.A383G	p.E128G	.	.	34	4	40	0	.	92
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66982895	66982895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KDM2A	NM_012308	exon7	c.A571T	p.M191L	.	.	81	18	66	0	.	661
KIF14	9928	broad.mit.edu	37	1	200561271	200561271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KIF14	NM_014875	exon16	c.T2750C	p.I917T	.	.	283	7	218	0	.	140
KIF19	124602	hgsc.bcm.edu	37	17	72348385	72348385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KIF19	NM_153209	exon14	c.T1886C	p.L629P	.	.	51	4	76	0	.	90
KIF21B	23046	hgsc.bcm.edu	37	1	200957983	200957983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KIF21B	NM_017596	exon22	c.C3209T	p.S1070F	.	.	103	5	90	0	.	96
KIFAP3	22920	broad.mit.edu	37	1	169951194	169951194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KIFAP3	NM_014970	exon15	c.G1717A	p.G573R	.	.	245	8	226	1	.	91
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158061246	158061246	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	KIRREL,NS,carcinoma,0	KIRREL	NM_018240	exon11	c.C1371T	p.T457T	.	.	64	12	57	0	.	91
KLHDC8A	55220	hgsc.bcm.edu	37	1	205306696	205306696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KLHDC8A	NM_018203	exon6	c.C884T	p.T295M	.	.	87	5	46	0	.	91
KRT86	3892	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52699516	52699516	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KRT86	NM_002284	exon6	c.G970T	p.E324X	.	.	127	24	93	1	.	91
KRTAP29-1	100533177	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39459053	39459053	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001257309	exon1	c.C51T	p.P17P	.	.	58	13	57	0	.	.
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	57	24	65	1	T|0.717;C|0.283	91
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	33	13	57	0	C|0.500;T|0.500	91
L1CAM	3897	hgsc.bcm.edu	37	X	153129904	153129904	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	L1CAM	NM_000425	exon24	c.A3195G	p.P1065P	.	.	97	4	80	0	.	138
LAG3	3902	broad.mit.edu	37	12	6883760	6883760	+	Splice_Site	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LAG3	NM_002286	exon4	c.512-1G>C	.	.	.	52	4	45	0	.	90
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152759984	152759984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LCE1E	NM_178353	exon2	c.C209A	p.S70Y	.	.	95	46	134	0	.	90
LCT	3938	hgsc.bcm.edu;bcgsc.ca	37	2	136566972	136566972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LCT	NM_002299	exon8	c.G2945A	p.R982Q	.	.	85	5	68	0	.	101
LDLR	3949	hgsc.bcm.edu	37	19	11218108	11218108	+	Silent	SNP	C	C	T	rs140241383	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LDLR	NM_001195798	exon6	c.C858T	p.S286S	.	.	74	4	51	0	C|0.999;T|0.001	94
LFNG	3955	hgsc.bcm.edu	37	7	2552880	2552880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LFNG	NM_001166355	exon2	c.C137T	p.T46I	.	.	79	7	53	0	.	636
LILRA2	11027	hgsc.bcm.edu	37	19	55087016	55087016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LILRA2	NM_001130917	exon5	c.A949G	p.T317A	.	.	95	4	73	0	.	91
LMBR1L	55716	hgsc.bcm.edu	37	12	49500745	49500745	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LMBR1L	NM_018113	exon2	c.A156G	p.T52T	.	.	119	5	97	0	.	227
LOC440434	0	bcgsc.ca	37	17	36364772	36364772	+	RNA	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	.	.	.	478	14	383	0	.	.
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	100013493	100013493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LOXL4	NM_032211	exon11	c.G1652A	p.R551H	.	.	37	5	39	0	.	230
LPHN2	23266	broad.mit.edu	37	1	82415890	82415890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LPHN2	NM_012302	exon6	c.A1216G	p.T406A	.	.	239	6	232	0	.	525
LPPR3	0	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	814544	814544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_024888	exon6	c.T805C	p.F269L	.	.	32	4	32	0	.	.
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57577928	57577928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRP1	NM_002332	exon37	c.C5990T	p.S1997F	.	.	104	12	74	0	.	596
LRRC1	55227	broad.mit.edu	37	6	53785500	53785500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRRC1	NM_018214	exon13	c.A1357G	p.N453D	.	.	206	4	141	0	.	91
LRRC17	10234	hgsc.bcm.edu	37	7	102575002	102575002	+	Missense_Mutation	SNP	A	A	T	rs77576273		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRRC17	NM_005824	exon2	c.A642T	p.E214D	.	.	156	5	83	0	.	91
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45914305	45914305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRRC46	NM_033413	exon8	c.C785T	p.P262L	.	.	114	6	86	0	.	91
LTV1	84946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	144184607	144184607	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LTV1	NM_032860	exon11	c.A1371G	p.R457R	.	.	260	77	201	0	.	91
MAGI1	9223	mdanderson.org	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MAGI1	NM_001033057	exon9	c.G1230A	p.Q410Q	.	.	91	11	78	1	.	661
MAML3	55534	hgsc.bcm.edu	37	4	140811114	140811114	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MAML3	NM_018717	exon2	c.G1476A	p.Q492Q	.	.	98	4	110	0	.	455
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	50923302	50923302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MAP4K5	NM_006575	exon14	c.T947C	p.I316T	.	.	127	7	64	0	.	546
MAT2A	4144	broad.mit.edu	37	2	85770809	85770809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MAT2A	NM_005911	exon9	c.A1102G	p.K368E	.	.	232	4	191	1	.	90
ME3	10873	broad.mit.edu	37	11	86160988	86160988	+	Silent	SNP	C	C	T	rs150979251		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ME3	NM_006680	exon10	c.G1074A	p.P358P	.	.	76	3	58	0	C|1.000;T|0.000	515
MEA1	4201	hgsc.bcm.edu	37	6	42980713	42980713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MEA1	NM_014623	exon3	c.G357T	p.E119D	.	.	120	9	74	0	.	91
MED7	9443	broad.mit.edu;bcgsc.ca	37	5	156565994	156565994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MED7	NM_001100816	exon2	c.C449A	p.A150D	.	.	234	9	179	0	.	22
MEF2A	4205	mdanderson.org	37	15	100252744	100252744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MEF2A	NM_005587	exon11	c.C1268A	p.P423Q	.	.	13	5	39	0	.	455
METTL2B	55798	hgsc.bcm.edu	37	7	128117152	128117152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	METTL2B	NM_018396	exon2	c.T127C	p.S43P	.	.	116	5	92	0	.	23
MICAL3	57553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18299504	18299504	+	Silent	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MICAL3	NM_015241	exon27	c.C5397G	p.L1799L	.	.	31	14	23	1	.	68
MICU1	10367	hgsc.bcm.edu	37	10	74293540	74293540	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001195518	exon5	c.T501C	p.G167G	.	.	54	4	45	0	.	.
MLL2	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49433043	49433043	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MLL2	NM_003482	exon33	c.T8328C	p.P2776P	.	.	59	11	68	3	.	612
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108723940	108723940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MORC1	NM_014429	exon19	c.G1990T	p.V664F	.	.	119	25	108	0	.	98
MS4A6A	64231	hgsc.bcm.edu;bcgsc.ca	37	11	59947379	59947379	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MS4A6A	NM_001247999	exon4	c.T291C	p.A97A	.	.	121	5	95	0	.	90
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23393130	23393130	+	Missense_Mutation	SNP	C	C	G	rs201493683	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MSRB2	NM_012228	exon2	c.C176G	p.T59S	.	.	117	25	101	0	C|0.999;T|0.001	90
MTL5	9633	hgsc.bcm.edu	37	11	68475846	68475846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MTL5	NM_004923	exon10	c.A1457G	p.E486G	.	.	149	6	132	0	.	155
MTNR1A	4543	hgsc.bcm.edu	37	4	187455222	187455222	+	Missense_Mutation	SNP	C	C	T	rs150858716		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MTNR1A	NM_005958	exon2	c.G674A	p.R225H	.	.	100	4	122	0	C|1.000;T|0.000	524
MUC21	394263	hgsc.bcm.edu	37	6	30955247	30955247	+	Missense_Mutation	SNP	C	C	T	rs144122059	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MUC21	NM_001010909	exon2	c.C1295T	p.A432V	.	.	163	10	87	0	C|1.000;T|0.000	92
MUC4	4585	hgsc.bcm.edu;broad.mit.edu	37	3	195511811	195511811	+	Missense_Mutation	SNP	G	G	T	rs71291864	bycluster;byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MUC4	NM_018406	exon2	c.C6640A	p.P2214T	.	.	118	6	139	0	CGT|0.250;GGC|0.250;GGCT|0.250;TGTC|0.250	90
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3241431	3241431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MXRA5	NM_015419	exon5	c.T2295A	p.F765L	.	.	210	81	280	0	.	136
MYCBPAP	84073	bcgsc.ca	37	17	48604723	48604723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYCBPAP	NM_032133	exon15	c.T2374C	p.C792R	.	.	109	6	69	0	.	230
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48603556	48603556	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYCBPAP	NM_032133	exon14	c.C2226T	p.S742S	.	.	65	22	55	0	.	230
MYH10	4628	hgsc.bcm.edu;bcgsc.ca	37	17	8480586	8480586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYH10	NM_005964	exon5	c.T601C	p.S201P	.	.	87	4	89	0	.	92
MYH3	4621	bcgsc.ca	37	17	10547763	10547763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYH3	NM_002470	exon14	c.T1315C	p.W439R	.	.	139	5	140	0	.	95
MYH3	4621	broad.mit.edu	37	17	10538320	10538320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYH3	NM_002470	exon31	c.T4193C	p.L1398P	.	.	120	4	123	0	.	95
MYO18B	84700	hgsc.bcm.edu	37	22	26164267	26164267	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYO18B	NM_032608	exon4	c.C384A	p.A128A	.	.	89	5	89	0	.	142
MYRIP	25924	bcgsc.ca	37	3	40299640	40299640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYRIP	NM_015460	exon17	c.T2563C	p.S855P	.	.	75	5	92	1	.	94
NAA35	60560	hgsc.bcm.edu	37	9	88631506	88631506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NAA35	NM_024635	exon18	c.G1621A	p.D541N	.	.	69	4	81	0	.	92
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	113085206	113085206	+	Silent	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NCAM1	NM_001242608	exon9	c.T1032A	p.S344S	.	.	112	11	81	0	.	23
NDNF	79625	broad.mit.edu	37	4	121958784	121958784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NDNF	NM_024574	exon4	c.G342T	p.K114N	.	.	44	3	38	0	.	90
NEK3	4752	hgsc.bcm.edu	37	13	52718058	52718058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NEK3	NM_002498	exon10	c.G869A	p.R290K	.	.	112	6	80	0	.	359
NEK9	91754	hgsc.bcm.edu	37	14	75590877	75590877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NEK9	NM_033116	exon2	c.A269G	p.E90G	.	.	133	6	125	0	.	359
NHLRC2	374354	hgsc.bcm.edu	37	10	115644138	115644138	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NHLRC2	NM_198514	exon5	c.A1038G	p.S346S	.	.	87	4	90	0	.	91
NPVF	64111	hgsc.bcm.edu	37	7	25266573	25266573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NPVF	NM_022150	exon2	c.A211G	p.I71V	.	.	336	12	221	0	.	91
NSRP1	84081	hgsc.bcm.edu	37	17	28499575	28499575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NSRP1	NM_032141	exon3	c.A130G	p.S44G	.	.	96	4	65	0	.	91
NXPE3	91775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101540640	101540640	+	Missense_Mutation	SNP	A	A	G	rs200530322		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_145037	exon8	c.A1522G	p.I508V	.	.	156	42	141	1	A|1.000;G|0.000	.
OBSCN	84033	hgsc.bcm.edu	37	1	228547659	228547659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OBSCN	NM_052843	exon81	c.G19066T	p.G6356W	.	.	113	6	77	0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228511085	228511085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OBSCN	NM_001271223	exon67	c.A18301G	p.S6101G	.	.	122	5	90	0	.	403
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131256869	131256872	+	Frame_Shift_Del	DEL	TGAG	TGAG	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	TGAG	TGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ODF2	NM_153435	exon17	c.2025_2028del	p.675_676del	.	.	102	22	63	0	.	69
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132527021	132527021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OPCML	NM_002545	exon2	c.A361T	p.N121Y	.	.	243	54	175	0	.	93
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145112137	145112137	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OPLAH	NM_017570	exon11	c.G1509A	p.L503L	.	.	43	9	77	0	.	68
OR11G2	390439	hgsc.bcm.edu	37	14	20666182	20666182	+	Missense_Mutation	SNP	G	G	A	rs77471263		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR11G2	NM_001005503	exon1	c.G688A	p.G230S	.	.	322	26	229	0	.	70
OR11G2	390439	hgsc.bcm.edu	37	14	20666184	20666184	+	Silent	SNP	C	C	G	rs74538160		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR11G2	NM_001005503	exon1	c.C690G	p.G230G	.	.	316	15	223	0	.	70
OR4C46	119749	hgsc.bcm.edu	37	11	51515417	51515417	+	Missense_Mutation	SNP	A	A	C	rs148928414	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR4C46	NM_001004703	exon1	c.A136C	p.T46P	.	.	142	26	131	0	A|0.982;C|0.018	69
OR4C46	119749	hgsc.bcm.edu	37	11	51515438	51515438	+	Silent	SNP	C	C	T	rs142892443	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR4C46	NM_001004703	exon1	c.C157T	p.L53L	.	.	144	19	131	0	C|0.985;T|0.015	69
OR4C46	119749	hgsc.bcm.edu	37	11	51515441	51515441	+	Missense_Mutation	SNP	G	G	T	rs151059393	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR4C46	NM_001004703	exon1	c.G160T	p.G54W	.	.	148	24	130	0	G|0.982;T|0.018	69
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936238	4936238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR51G2	NM_001005238	exon1	c.T656G	p.I219S	.	.	116	32	101	0	.	70
OR51I1	390063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5462447	5462447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR51I1	NM_001005288	exon1	c.C298A	p.L100M	.	.	139	37	89	0	.	69
OR51V1	283111	hgsc.bcm.edu	37	11	5221442	5221442	+	Silent	SNP	G	G	A	rs76139118		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	OR51V1,upper_arm,malignant_melanoma,-2	OR51V1	NM_001004760	exon1	c.C489T	p.F163F	.	.	99	6	78	1	.	69
OR6B3	150681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240984862	240984862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR6B3	NM_173351	exon1	c.C628G	p.P210A	.	.	279	55	256	0	.	68
OR8H3	390152	broad.mit.edu	37	11	55890080	55890080	+	Missense_Mutation	SNP	G	G	A	rs150890673		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR8H3	NM_001005201	exon1	c.G232A	p.V78I	.	.	414	7	319	1	G|1.000;A|0.000	70
ORMDL2	29095	hgsc.bcm.edu	37	12	56212815	56212815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ORMDL2	NM_014182	exon2	c.A32G	p.N11S	.	.	81	4	81	0	.	68
OVOL1	5017	hgsc.bcm.edu	37	11	65561586	65561586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OVOL1	NM_004561	exon2	c.A185G	p.N62S	.	.	92	4	81	0	.	68
PCDH12	51294	hgsc.bcm.edu	37	5	141335035	141335035	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCDH12	NM_016580	exon1	c.C2382T	p.S794S	.	.	77	4	70	0	.	93
PCDHA1	56147	broad.mit.edu	37	5	140166817	140166817	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCDHA1	NM_031411	exon1	c.A942G	p.K314K	.	.	201	5	154	0	.	23
PCLO	27445	broad.mit.edu;bcgsc.ca	37	7	82546081	82546081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCLO	NM_014510	exon7	c.A11221T	p.S3741C	.	.	302	8	210	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82389961	82389961	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCLO	NM_033026	exon24	c.T15282C	p.S5094S	.	.	508	113	390	0	.	29
PCMTD2	55251	hgsc.bcm.edu	37	20	62904798	62904798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCMTD2	NM_018257	exon6	c.T931C	p.C311R	.	.	59	4	43	0	.	22
PDCD11	22984	hgsc.bcm.edu	37	10	105202983	105202983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDCD11	NM_014976	exon33	c.T5017C	p.S1673P	.	.	92	4	63	0	.	275
PDCD4	27250	hgsc.bcm.edu;bcgsc.ca	37	10	112641040	112641040	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDCD4	NM_014456	exon3	c.T93C	p.A31A	.	.	91	4	92	0	.	291
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122849447	122849447	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDIA5	NM_006810	exon11	c.C894A	p.V298V	.	.	121	26	113	0	.	91
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57334962	57334962	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PEG3	NM_001146184	exon4	c.C480T	p.F160F	.	.	70	15	47	0	.	164
PHF11	51131	hgsc.bcm.edu;bcgsc.ca	37	13	50080776	50080776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PHF11	NM_001040443	exon2	c.T100C	p.F34L	.	.	54	4	45	0	.	90
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	18266738	18266738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PIK3R2	NM_005027	exon2	c.C49T	p.R17W	.	.	16	7	17	0	.	1311
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	159481873	159481873	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PKP4	NM_001005476	exon7	c.C1087T	p.Q363X	.	.	268	48	223	0	.	97
PLAC9	219348	hgsc.bcm.edu	37	10	81901931	81901931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PLAC9	NM_001012973	exon2	c.A158G	p.E53G	.	.	52	4	40	0	.	90
PLBD1	79887	broad.mit.edu	37	12	14706140	14706140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PLBD1	NM_024829	exon2	c.T322C	p.Y108H	.	.	122	3	90	0	.	90
PLCXD1	55344	hgsc.bcm.edu	37	X	215776	215776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PLCXD1	NM_018390	exon7	c.T746C	p.V249A	.	.	76	4	123	0	.	136
POMZP3	22932	hgsc.bcm.edu	37	7	76240786	76240786	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	POMZP3	NM_012230	exon6	c.T560G	p.L187R	.	.	138	8	92	0	.	90
POSTN	10631	broad.mit.edu	37	13	38156561	38156561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	POSTN,NS,carcinoma,+1	POSTN	NM_006475	exon10	c.A1334G	p.N445S	.	.	150	4	115	1	.	516
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35577440	35577440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PPP2R3C	NM_017917	exon5	c.A407T	p.Q136L	.	.	102	17	53	0	.	227
PRDM16	63976	bcgsc.ca	37	1	3328012	3328012	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PRDM16	NM_022114	exon9	c.C1251T	p.A417A	.	.	171	6	144	0	.	660
PRDM2	7799	hgsc.bcm.edu	37	1	14106394	14106394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PRDM2	NM_015866	exon8	c.A2104C	p.T702P	.	.	184	4	110	0	.	116
PREX2	80243	hgsc.bcm.edu	37	8	68972975	68972975	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PREX2	NM_025170	exon11	c.T1300C	p.L434L	.	.	97	4	109	0	.	390
PRKAA2	5563	broad.mit.edu	37	1	57169727	57169727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PRKAA2	NM_006252	exon7	c.A872G	p.E291G	.	.	280	7	236	3	.	885
PROC	5624	mdanderson.org	37	2	128180616	128180616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PROC	NM_000312	exon5	c.A269G	p.D90G	.	.	11	2	27	0	.	90
PRSS38	339501	hgsc.bcm.edu	37	1	228033905	228033905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PRSS38	NM_183062	exon5	c.T977C	p.L326P	.	.	52	4	30	0	.	92
PTCH2	8643	broad.mit.edu	37	1	45295300	45295300	+	Missense_Mutation	SNP	G	G	A	rs145240049		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTCH2	NM_001166292	exon8	c.C1069T	p.R357W	.	.	197	5	145	1	G|0.999;A|0.000	851
PTPN22	26191	hgsc.bcm.edu	37	1	114380935	114380935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTPN22	NM_015967	exon13	c.G1087A	p.A363T	.	.	100	4	99	0	.	227
PTPN23	25930	mdanderson.org	37	3	47452623	47452623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTPN23	NM_015466	exon20	c.G3335A	p.R1112Q	.	.	8	2	36	1	.	227
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8384641	8384641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTPRM	NM_001105244	exon30	c.A4001G	p.E1334G	.	.	128	6	94	0	.	228
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81014071	81014071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145026	exon29	c.T5012A	p.I1671N	.	.	177	35	165	0	.	.
PTPRZ1	5803	hgsc.bcm.edu	37	7	121653374	121653374	+	Missense_Mutation	SNP	G	G	A	rs62639684	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTPRZ1	NM_002851	exon12	c.G4274A	p.G1425D	.	.	214	12	154	0	G|0.714;A|0.286	699
PXN	5829	bcgsc.ca	37	12	120652914	120652914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PXN	NM_001243756	exon7	c.G1138A	p.A380T	.	.	32	4	97	0	.	660
RAB37	326624	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72741039	72741039	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RAB37	NM_001163989	exon7	c.C475G	p.R159G	.	.	150	38	122	2	.	230
RAPGEF6	51735	broad.mit.edu;bcgsc.ca	37	5	130764892	130764892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RAPGEF6	NM_001164386	exon28	c.C4507T	p.P1503S	.	.	201	8	175	0	.	661
RBBP8	5932	broad.mit.edu;bcgsc.ca	37	18	20581655	20581655	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RBBP8	NM_203292	exon15	c.A2250G	p.E750E	.	.	205	7	178	0	.	659
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	114424946	114424946	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145346	exon1	c.C942T	p.A314A	.	.	130	11	144	0	.	.
RBMXL3	139804	mdanderson.org	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145346	exon1	c.G1192A	p.D398N	.	.	48	43	26	0	G|0.483;A|0.517	.
RBMXL3	139804	mdanderson.org	37	X	114425210	114425210	+	Silent	SNP	G	G	A	rs12399213		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145346	exon1	c.G1206A	p.G402G	.	.	30	25	37	0	G|0.607;A|0.393	.
RHOB	388	hgsc.bcm.edu	37	2	20647265	20647265	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	RHOB,NS,carcinoma,+2	RHOB	NM_004040	exon1	c.C39T	p.D13D	.	.	27	2	33	0	.	848
RIMS1	22999	bcgsc.ca	37	6	72968767	72968767	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RIMS1	NM_014989	exon18	c.T3006C	p.D1002D	.	.	115	5	88	0	.	144
RLTPR	146206	hgsc.bcm.edu	37	16	67686234	67686234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RLTPR	NM_001013838	exon27	c.A2809G	p.K937E	.	.	30	4	24	0	.	67
RNF138	51444	bcgsc.ca	37	18	29691754	29691754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RNF138	NM_001191324	exon2	c.A148G	p.S50G	.	.	122	5	103	1	.	226
RNF34	80196	hgsc.bcm.edu	37	12	121858086	121858086	+	Silent	SNP	T	T	C	rs190921881	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RNF34	NM_194271	exon5	c.T678C	p.D226D	.	.	100	10	67	0	.	226
RRM1	6240	hgsc.bcm.edu	37	11	4153626	4153626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RRM1	NM_001033	exon16	c.G1880A	p.R627H	.	.	93	4	75	0	.	227
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148846461	148846461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SASH1	NM_015278	exon11	c.A1244G	p.N415S	.	.	67	17	61	0	.	90
SCFD1	23256	hgsc.bcm.edu;bcgsc.ca	37	14	31107344	31107345	+	Frame_Shift_Ins	INS	-	-	ACTAT	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCFD1	NM_016106	exon5	c.326_327insACTAT	p.Q109fs	.	.	206	50	151	1	.	226
SCN11A	11280	hgsc.bcm.edu;bcgsc.ca	37	3	38921489	38921489	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCN11A	NM_014139	exon19	c.A3345G	p.G1115G	.	.	88	4	80	0	.	99
SCN4A	6329	hgsc.bcm.edu	37	17	62045610	62045610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCN4A	NM_000334	exon6	c.A809G	p.Q270R	.	.	186	8	143	0	.	93
SENP3	26168	hgsc.bcm.edu	37	17	7470288	7470288	+	Missense_Mutation	SNP	A	A	G	rs76586164		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SENP3	NM_015670	exon8	c.A1307G	p.K436R	.	.	155	14	178	0	A|0.500;G|0.500	659
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135204112	135204112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SETX	NM_015046	exon10	c.T2873C	p.I958T	.	.	206	29	173	0	.	93
SFRP4	6424	mdanderson.org	37	7	37956080	37956080	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SFRP4	NM_003014	exon1	c.C60T	p.R20R	.	.	9	3	12	0	.	658
SH3BGR	6450	hgsc.bcm.edu	37	21	40883671	40883671	+	Missense_Mutation	SNP	G	G	A	rs77389080		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SH3BGR	NM_007341	exon6	c.G689A	p.G230E	.	.	63	1	48	0	C|0.500;T|0.500	90
SH3BP4	23677	hgsc.bcm.edu	37	2	235950464	235950464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SH3BP4	NM_014521	exon4	c.A1051G	p.T351A	.	.	68	4	54	0	.	94
SLBP	7884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1701341	1701341	+	Missense_Mutation	SNP	G	G	C	rs200085408		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLBP	NM_006527	exon5	c.C429G	p.N143K	.	.	264	49	195	0	G|0.999;C|0.001	90
SLC16A13	201232	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6943090	6943090	+	Missense_Mutation	SNP	C	C	T	rs143183384	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC16A13	NM_201566	exon4	c.C1090T	p.R364W	.	.	149	41	153	0	C|0.995;T|0.005	92
SLC25A5	292	hgsc.bcm.edu	37	X	118603984	118603984	+	Missense_Mutation	SNP	G	G	A	rs199678822		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	SLC25A5,NS,carcinoma,0	SLC25A5	NM_001152	exon2	c.G472A	p.G158S	.	.	98	4	109	2	.	131
SLC38A2	54407	hgsc.bcm.edu;bcgsc.ca	37	12	46756927	46756927	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC38A2	NM_018976	exon13	c.A1056G	p.E352E	.	.	75	4	64	0	.	226
SLC44A5	204962	broad.mit.edu	37	1	75672363	75672363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC44A5	NM_152697	exon24	c.T2089C	p.Y697H	.	.	183	4	134	1	.	95
SLC50A1	55974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155110121	155110121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC50A1	NM_018845	exon4	c.G367A	p.E123K	.	.	97	28	68	0	.	69
SLC6A7	6534	hgsc.bcm.edu	37	5	149578931	149578931	+	Splice_Site	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC6A7	NM_014228	exon5	c.723+2T>C	.	.	.	95	4	78	0	.	90
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173476077	173476077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_178527	exon25	c.T3143G	p.I1048S	.	.	184	38	169	0	.	.
SMAD2	4087	hgsc.bcm.edu	37	18	45375012	45375012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SMAD2	NM_005901	exon8	c.A831G	p.I277M	.	.	73	3	88	0	.	1333
SMURF2	64750	bcgsc.ca	37	17	62582274	62582274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SMURF2	NM_022739	exon6	c.A415G	p.R139G	.	.	86	4	81	1	.	661
SNAP29	9342	hgsc.bcm.edu;bcgsc.ca	37	22	21235343	21235343	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNAP29	NM_004782	exon3	c.A441G	p.K147K	.	.	84	4	101	0	.	278
SNAPC1	6617	hgsc.bcm.edu;bcgsc.ca	37	14	62233751	62233751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNAPC1	NM_003082	exon2	c.A286G	p.K96E	.	.	86	4	97	0	.	90
SNRK	54861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43344896	43344896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNRK	NM_017719	exon3	c.G201T	p.M67I	.	.	163	49	146	1	.	815
SNX9	51429	broad.mit.edu	37	6	158331037	158331037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNX9	NM_016224	exon9	c.T929C	p.L310P	.	.	208	5	150	0	.	226
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	8813094	8813094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_015210	exon12	c.G2722C	p.V908L	.	.	156	14	135	0	.	.
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21469601	21469601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SP4	NM_003112	exon3	c.A818G	p.N273S	.	.	174	44	130	0	.	95
SPEG	10290	hgsc.bcm.edu	37	2	220333895	220333895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SPEG	NM_005876	exon13	c.T3509C	p.M1170T	.	.	63	4	69	0	.	383
SPIB	6689	mdanderson.org	37	19	50926264	50926264	+	Missense_Mutation	SNP	T	T	A	rs1673030	byfrequency;alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SPIB	NM_001244000	exon4	c.T251A	p.L84Q	.	.	29	3	63	0	T|0.149;C|0.851	658
SPRR3	6707	mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	84	25	81	2	A|0.010;C|0.001;T|0.988	45
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30750366	30750366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SRCAP	NM_006662	exon34	c.C9005G	p.P3002R	.	.	84	6	54	0	.	94
SSPO	23145	mdanderson.org	37	7	149519673	149519673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_198455	exon91	c.G13163A	p.R4388Q	.	.	12	3	11	0	.	.
STAG3	10734	hgsc.bcm.edu	37	7	99787154	99787154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	STAG3	NM_012447	exon8	c.A802G	p.R268G	.	.	96	4	63	0	.	543
STXBP2	6813	hgsc.bcm.edu	37	19	7707395	7707395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	STXBP2,brain,glioma,+1	STXBP2	NM_001272034	exon10	c.G908A	p.R303H	.	.	91	4	70	0	.	91
SULT1A2	6799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28606943	28606943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SULT1A2	NM_001054	exon3	c.G202A	p.E68K	.	.	121	47	99	0	.	90
SUN1	23353	hgsc.bcm.edu	37	7	882841	882841	+	Splice_Site	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SUN1	NM_001171946	exon5	c.452-2A>G	.	.	.	90	5	78	0	.	90
SUOX	6821	broad.mit.edu	37	12	56397579	56397579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SUOX	NM_000456	exon6	c.T406C	p.F136L	.	.	168	4	136	0	.	90
SUPT20HL2	170067	hgsc.bcm.edu	37	X	24329882	24329884	+	In_Frame_Del	DEL	TAA	TAA	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	TAA	TAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001136233	exon1	c.1549_1551del	p.517_517del	.	.	162	10	171	0	.	.
SUPT20HL2	170067	hgsc.bcm.edu	37	X	24329896	24329896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001136233	exon1	c.G1537C	p.A513P	.	.	177	25	177	0	.	.
SUPT20HL2	170067	hgsc.bcm.edu	37	X	24329926	24329926	+	Missense_Mutation	SNP	C	C	G	rs201210344		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001136233	exon1	c.G1507C	p.A503P	.	.	236	13	232	0	.	.
SVEP1	79987	broad.mit.edu	37	9	113221386	113221386	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SVEP1	NM_153366	exon19	c.T3330C	p.C1110C	.	.	97	4	80	0	.	75
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70607151	70607151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TAF1	NM_004606	exon15	c.A2327G	p.H776R	.	.	235	86	256	0	.	900
TBC1D8	11138	hgsc.bcm.edu	37	2	101656711	101656711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	TBC1D8,NS,carcinoma,0	TBC1D8	NM_001102426	exon6	c.G964A	p.A322T	.	.	61	3	60	0	.	25
TBCD	6904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80888501	80888501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TBCD	NM_005993	exon33	c.A3095G	p.D1032G	.	.	107	23	83	1	.	22
TBP	6908	hgsc.bcm.edu	37	6	170871013	170871013	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TBP	NM_003194	exon3	c.A189G	p.Q63Q	.	.	98	10	73	0	.	91
TBP	6908	hgsc.bcm.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TBP	NM_003194	exon3	c.G192A	p.Q64Q	.	.	97	4	74	0	.	91
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121058616	121058616	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TECTA	NM_005422	exon20	c.C6075T	p.T2025T	.	.	89	24	93	0	.	225
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27190548	27190548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TEK	NM_000459	exon10	c.C1349G	p.A450G	.	.	183	17	184	0	.	1584
TEN1	100134934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73996268	73996268	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001113324	exon4	c.G297T	p.G99G	.	.	67	18	46	0	.	.
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	78775891	78775891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001098816	exon6	c.G385A	p.V129M	.	.	48	12	45	0	.	.
TEX15	56154	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	30701385	30701385	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TEX15	NM_031271	exon1	c.C5149T	p.R1717X	.	.	91	30	99	1	.	97
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81625157	81625157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMC3	NM_001080532	exon22	c.C2906A	p.A969D	.	.	72	18	47	0	.	70
TMEM138	51524	hgsc.bcm.edu	37	11	61131933	61131933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMEM138	NM_016464	exon2	c.T71C	p.V24A	.	.	99	4	68	0	.	90
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42556385	42556385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMEM87A	NM_001110503	exon4	c.T308G	p.L103W	.	.	220	69	211	0	.	91
TNC	3371	hgsc.bcm.edu	37	9	117848274	117848274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TNC	NM_002160	exon3	c.T1736C	p.I579T	.	.	110	6	77	0	.	517
TNS1	7145	hgsc.bcm.edu	37	2	218713231	218713231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TNS1	NM_022648	exon17	c.A1634G	p.D545G	.	.	67	4	95	0	.	156
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578478	7578478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C452A	p.P151H	.	.	68	17	61	0	.	70225
TPRX1	284355	hgsc.bcm.edu	37	19	48305566	48305566	+	Silent	SNP	C	C	T	rs12463317		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TPRX1	NM_198479	exon2	c.G702A	p.P234P	.	.	22	6	31	0	.	90
TRAPPC10	7109	hgsc.bcm.edu	37	21	45523364	45523364	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TRAPPC10	NM_003274	exon23	c.G3732A	p.L1244L	.	.	58	4	106	0	.	92
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TRIM52	NM_032765	exon1	c.A375G	p.E125E	.	.	136	16	110	0	T|0.991;C|0.009	90
UCP1	7350	hgsc.bcm.edu	37	4	141484320	141484320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	UCP1	NM_021833	exon4	c.A572G	p.E191G	.	.	122	6	139	0	.	91
USP30	84749	hgsc.bcm.edu;bcgsc.ca	37	12	109519740	109519740	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	USP30	NM_032663	exon9	c.T783C	p.G261G	.	.	155	7	94	0	.	658
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49362451	49362451	+	Missense_Mutation	SNP	C	C	A	rs117411669	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	USP4	NM_199443	exon5	c.G509T	p.R170L	.	.	150	42	131	0	C|0.999;T|0.001	660
UTRN	7402	hgsc.bcm.edu	37	6	145021342	145021342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	UTRN	NM_007124	exon52	c.A7772G	p.D2591G	.	.	94	4	62	0	.	95
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100829851	100829851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	VPS13B	NM_017890	exon45	c.A8256C	p.Q2752H	.	.	232	49	147	0	.	301
WDHD1	11169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55467661	55467661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDHD1	NM_007086	exon9	c.G743A	p.G248D	.	.	306	128	207	0	.	91
WDR1	9948	hgsc.bcm.edu;bcgsc.ca	37	4	10099482	10099482	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR1	NM_017491	exon5	c.T411C	p.S137S	.	.	92	4	57	0	.	48
WDR3	10885	hgsc.bcm.edu	37	1	118495158	118495158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR3	NM_006784	exon19	c.A2024G	p.H675R	.	.	93	4	93	0	.	91
WDR6	11180	hgsc.bcm.edu	37	3	49052272	49052272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR6	NM_018031	exon6	c.T3007C	p.S1003P	.	.	104	5	62	0	.	90
WDR73	84942	hgsc.bcm.edu	37	15	85186892	85186892	+	Missense_Mutation	SNP	C	C	T	rs199676984		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR73	NM_032856	exon8	c.G946A	p.G316R	.	.	129	15	100	0	.	90
WDR73	84942	hgsc.bcm.edu	37	15	85186894	85186894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR73	NM_032856	exon8	c.944delA	p.D315fs	.	.	127	16	100	0	.	90
WNK2	65268	hgsc.bcm.edu;broad.mit.edu	37	9	96021717	96021717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WNK2	NM_006648	exon11	c.C2887A	p.P963T	.	.	21	4	31	0	.	765
WNK3	65267	broad.mit.edu	37	X	54319740	54319740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WNK3	NM_001002838	exon9	c.G1714A	p.G572R	.	.	91	3	108	0	.	441
WWC1	23286	hgsc.bcm.edu	37	5	167881029	167881029	+	Missense_Mutation	SNP	T	T	A	rs28427161		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WWC1	NM_015238	exon18	c.T2582A	p.V861E	.	.	125	2	98	0	T|0.500;A|0.500	157
XPO4	64328	hgsc.bcm.edu	37	13	21375110	21375110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	XPO4	NM_022459	exon14	c.A1837G	p.R613G	.	.	89	4	90	0	.	272
XYLT1	64131	hgsc.bcm.edu	37	16	17211760	17211760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	XYLT1	NM_022166	exon11	c.T2300C	p.V767A	.	.	144	7	154	0	.	94
ZC3H4	23211	hgsc.bcm.edu	37	19	47575243	47575243	+	Silent	SNP	T	T	A	rs392366		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZC3H4	NM_015168	exon13	c.A1938T	p.A646A	.	.	68	15	50	0	A|0.000;G|0.000;T|1.000	74
ZC3H4	23211	hgsc.bcm.edu	37	19	47575245	47575245	+	Missense_Mutation	SNP	C	C	G	rs381976		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZC3H4	NM_015168	exon13	c.G1936C	p.A646P	.	.	69	15	52	0	C|1.000;|0.000	74
ZC3H4	23211	hgsc.bcm.edu	37	19	47575255	47575255	+	Silent	SNP	A	A	C	rs73943611		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZC3H4	NM_015168	exon13	c.T1926G	p.P642P	.	.	60	8	56	0	A|0.996;C|0.000;T|0.003	74
ZC3H4	23211	hgsc.bcm.edu	37	19	47575267	47575267	+	Silent	SNP	C	C	G	rs200656728	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZC3H4	NM_015168	exon13	c.G1914C	p.P638P	.	.	65	6	56	0	C|1.000;A|0.000	74
ZCCHC4	29063	broad.mit.edu	37	4	25315755	25315755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZCCHC4	NM_024936	exon2	c.A215G	p.D72G	.	.	159	5	107	0	.	70
ZFHX4	79776	hgsc.bcm.edu	37	8	77762578	77762578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZFHX4	NM_024721	exon9	c.A3944G	p.E1315G	.	.	92	5	78	0	.	98
ZNF317	57693	hgsc.bcm.edu	37	19	9271064	9271064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF317	NM_020933	exon7	c.A743G	p.K248R	.	.	93	4	56	0	.	90
ZNF318	24149	broad.mit.edu;mdanderson.org	37	6	43325451	43325451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF318	NM_014345	exon3	c.G601A	p.G201S	.	.	106	24	68	0	.	157
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720474	21720474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF429	NM_001001415	exon4	c.A1619T	p.E540V	.	.	42	10	32	0	.	516
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	32873386	32873386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF507	NM_001136156	exon6	c.G2374C	p.G792R	.	.	196	37	178	0	.	230
ZNF541	84215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48047823	48047823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF541	.	.	.	.	.	.	63	20	42	0	.	23
ZNF609	23060	hgsc.bcm.edu	37	15	64967011	64967011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF609	NM_015042	exon4	c.T1958A	p.L653Q	.	.	107	5	90	0	.	92
ZNF683	257101	hgsc.bcm.edu	37	1	26691310	26691310	+	Missense_Mutation	SNP	G	G	C	rs145815386		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_173574	exon4	c.C727G	p.L243V	.	.	64	6	30	0	G|1.000;C|0.000	.
ZNF713	349075	broad.mit.edu	37	7	56007189	56007189	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF713	NM_182633	exon4	c.C783T	p.S261S	.	.	121	4	97	0	.	92
ZNF714	148206	hgsc.bcm.edu	37	19	21299777	21299777	+	Missense_Mutation	SNP	G	G	A	rs111443257		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF714	NM_182515	exon5	c.G307A	p.E103K	.	.	304	18	205	0	.	67
ZNF726	730087	bcgsc.ca	37	19	24115505	24115505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001244038	exon4	c.C587T	p.T196I	.	.	46	12	46	0	.	.
ZNF793	390927	broad.mit.edu	37	19	38023312	38023312	+	Missense_Mutation	SNP	C	C	T	rs201422659		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF793	NM_001013659	exon6	c.C70T	p.R24W	.	.	93	5	83	1	.	68
ZNF814	730051	hgsc.bcm.edu	37	19	58385536	58385536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001144989	exon3	c.T1222C	p.Y408H	.	.	305	12	226	0	.	.
ZNF816	125893	hgsc.bcm.edu	37	19	53453990	53453990	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF816	NM_001202457	exon4	c.T1038C	p.C346C	.	.	109	5	82	0	.	68
CALR	811	hgsc.bcm.edu	37	19	13054664	13054665	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	p.E398K	.	.	.	.	.	.	.	
LCE4A	199834	hgsc.bcm.edu	37	1	152681679	152681680	+	Missense_Mutation	DNP	CC	CC	GT	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	p.S43C	.	.	.	.	.	.	.	
SYNJ1	8867	hgsc.bcm.edu	37	21	34003927	34003928	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	.	.	.	p.L1406K	.	.	.	.	.	.	.	
