Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADACL2	344752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151475327	151475327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	AADACL2	NM_207365	exon5	c.G1151A	p.R384H	.	.	148	16	144	0	.	90
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109629713	109629713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACACB	NM_001093	exon14	c.T2357A	p.M786K	.	.	187	35	242	0	.	98
ACCS	84680	ucsc.edu;bcgsc.ca	37	11	44104981	44104981	+	Missense_Mutation	SNP	C	C	T	rs3107275	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACCS	NM_032592	exon14	c.C1262T	p.P421L	.	.	52	5	138	0	C|0.575;T|0.425	155
ACPP	55	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132075565	132075565	+	Missense_Mutation	SNP	C	C	T	rs148218296	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACPP	NM_001099	exon10	c.C1004T	p.T335M	.	.	104	38	156	1	C|0.999;T|0.001	91
ACRC	93953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70824088	70824088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACRC	NM_052957	exon8	c.G961A	p.D321N	.	.	134	93	144	1	.	93
ACTRT3	84517	broad.mit.edu	37	3	169485705	169485705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_032487	exon2	c.A634G	p.K212E	.	.	139	6	185	0	.	.
ACTRT3	84517	broad.mit.edu;bcgsc.ca	37	3	169485800	169485800	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_032487	exon2	c.C539G	p.A180G	.	.	178	7	288	0	.	.
ADAM12	8038	bcgsc.ca	37	10	127737930	127737930	+	Silent	SNP	G	G	A	rs2292692	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADAM12	NM_021641	exon16	c.C1818T	p.P606P	.	.	81	5	306	2	G|0.869;A|0.131	716
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24256455	24256455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADAMDEC1	NM_014479	exon9	c.A831G	p.I277M	.	.	115	93	227	0	.	228
ADAMTSL1	92949	broad.mit.edu;bcgsc.ca	37	9	18777038	18777038	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADAMTSL1	NM_001040272	exon19	c.C2811G	p.L937L	.	.	5	3	78	0	.	230
ADH1C	126	bcgsc.ca	37	4	100266112	100266112	+	RNA	SNP	C	C	T	rs1693425	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	.	.	.	.	.	.	69	5	212	0	C|0.743;T|0.257	.
ADPRH	141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119306692	119306692	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADPRH	NM_001125	exon5	c.C1041A	p.L347L	.	.	62	32	53	0	.	91
ANAPC2	29882	ucsc.edu	37	9	140077639	140077639	+	Silent	SNP	G	G	A	rs11549105	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ANAPC2	NM_013366	exon6	c.C1224T	p.R408R	.	.	21	4	210	3	G|0.835;A|0.165	227
ANKH	56172	bcgsc.ca	37	5	14769103	14769103	+	Silent	SNP	G	G	A	rs17251667	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ANKH	NM_054027	exon2	c.C294T	p.A98A	.	.	158	6	325	1	G|0.877;A|0.123	91
ANKLE1	126549	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17397244	17397244	+	Silent	SNP	C	C	T	rs10425939	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_152363	exon9	c.C1731T	p.G577G	.	.	11	4	120	0	C|0.850;T|0.150	.
ARHGAP40	343578	bcgsc.ca;mdanderson.org	37	20	37268001	37268001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ARHGAP40	NM_001164431	exon9	c.G1248C	p.E416D	.	.	69	10	162	0	.	68
ARHGEF12	23365	broad.mit.edu;bcgsc.ca	37	11	120350778	120350778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ARHGEF12	NM_015313	exon38	c.G3876C	p.Q1292H	.	.	127	5	125	1	.	661
ARSD	414	bcgsc.ca	37	X	2836034	2836034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ARSD	NM_001669	exon5	c.T674C	p.V225A	.	.	29	11	85	0	.	130
ASB4	51666	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95115314	95115314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ASB4	NM_016116	exon1	c.T31C	p.S11P	.	.	93	41	129	1	.	226
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	81548458	81548458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ATG10	NM_001131028	exon7	c.G531T	p.K177N	.	.	102	21	128	0	.	90
ATP5C1	509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7839122	7839122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ATP5C1	NM_001001973	exon3	c.A204G	p.I68M	.	.	93	28	88	0	.	90
BCL6	604	broad.mit.edu	37	3	187447749	187447749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BCL6	NM_001134738	exon4	c.G444A	p.M148I	.	.	60	4	130	0	.	848
BIRC8	112401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53793408	53793408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BIRC8	NM_033341	exon1	c.G220A	p.G74R	.	.	145	59	187	0	.	227
BTBD9	114781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38565731	38565731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BTBD9	NM_052893	exon3	c.T140C	p.F47S	.	.	198	25	221	0	.	226
C18orf8	29919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21089229	21089229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C18orf8	NM_013326	exon5	c.A394G	p.I132V	.	.	145	21	144	0	.	91
C1orf228	339541	broad.mit.edu;bcgsc.ca	37	1	45190837	45190837	+	Silent	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001145636	exon11	c.A1158T	p.I386I	.	.	138	7	404	2	.	.
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60505838	60505838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C1orf87	NM_152377	exon5	c.C498A	p.S166R	.	.	87	44	56	0	.	154
C21orf128	150147	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	43523905	43523905	+	RNA	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	.	.	.	.	.	.	146	13	318	0	.	.
C22orf29	79680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19839038	19839038	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C22orf29	NM_024627	exon3	c.A747G	p.V249V	.	.	17	8	77	0	.	90
C2orf62	375307	ucsc.edu;bcgsc.ca	37	2	219221846	219221846	+	Silent	SNP	G	G	A	rs4324314	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C2orf62	NM_198559	exon2	c.G54A	p.S18S	.	.	15	7	101	1	G|0.844;A|0.156	68
CA9	768	hgsc.bcm.edu	37	9	35674204	35674204	+	Missense_Mutation	SNP	T	T	C	rs146966274	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CA9	NM_001216	exon1	c.T248C	p.L83P	.	.	80	8	131	0	T|0.986;C|0.014	95
CA9	768	hgsc.bcm.edu;ucsc.edu	37	9	35674208	35674208	+	Silent	SNP	T	T	C	rs137897809	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	CA9,upper_leg,malignant_melanoma,0	CA9	NM_001216	exon1	c.T252C	p.P84P	.	.	85	12	133	0	T|0.985;C|0.015	95
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65139104	65139104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CACHD1	NM_020925	exon19	c.A2531G	p.D844G	.	.	169	18	166	0	.	92
CACNA1I	8911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40030630	40030630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CACNA1I	NM_001003406	exon5	c.T641A	p.L214Q	.	.	121	52	215	1	.	135
CACNA1S	779	ucsc.edu;bcgsc.ca	37	1	201022376	201022376	+	Silent	SNP	G	G	A	rs56183942	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CACNA1S	NM_000069	exon31	c.C3822T	p.I1274I	.	.	26	5	211	2	G|0.969;A|0.031	94
CASS4	57091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55012476	55012476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CASS4	NM_020356	exon2	c.A293G	p.Y98C	.	.	11	5	104	0	.	25
CATSPERD	257062	bcgsc.ca	37	19	5772950	5772950	+	Missense_Mutation	SNP	G	G	A	rs61180947	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_152784	exon20	c.G1915A	p.G639R	.	.	95	8	122	1	G|0.749;A|0.251	.
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179718305	179718305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CCDC141	NM_173648	exon20	c.G3107A	p.G1036E	.	.	57	12	50	0	.	78
CCDC27	148870	bcgsc.ca	37	1	3669205	3669205	+	Missense_Mutation	SNP	C	C	G	rs10910021	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CCDC27	NM_152492	exon1	c.C160G	p.Q54E	.	.	41	4	183	0	C|0.626;G|0.374	91
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	26902658	26902658	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CDH9	NM_016279	exon7	c.G1180T	p.E394X	.	.	83	45	73	0	.	99
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104065713	104065713	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CENPE	NM_001813	exon33	c.G4920A	p.Q1640Q	.	.	37	21	40	0	.	277
CEP72	55722	broad.mit.edu	37	5	648000	648000	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CEP72	NM_018140	exon11	c.G1747C	p.E583Q	.	.	156	5	575	2	.	69
CIT	11113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120222843	120222843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CIT	NM_001206999	exon11	c.C1322A	p.P441H	.	.	107	5	149	0	.	399
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	19207465	19207465	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CLTCL1	NM_001835	exon18	c.A2848T	p.R950X	.	.	106	37	150	0	.	230
CNN1	1264	bcgsc.ca	37	19	11660213	11660213	+	Silent	SNP	C	C	T	rs75731155	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CNN1	NM_001299	exon6	c.C577T	p.L193L	.	.	12	3	194	2	C|0.982;T|0.018	90
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	183942845	183942845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_015101	exon4	c.C532T	p.L178F	.	.	79	7	69	0	.	.
CPA2	1358	bcgsc.ca	37	7	129908820	129908820	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CPA2	NM_001869	exon2	c.G123A	p.L41L	.	.	123	6	85	0	.	91
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17068704	17068704	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CPAMD8	NM_015692	exon19	c.T2376C	p.T792T	.	.	102	26	92	0	.	141
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207791472	207791472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CR1	NM_000651	exon42	c.C6946A	p.L2316I	.	.	212	87	293	0	.	93
CR1L	1379	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207870921	207870921	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CR1L	NM_175710	exon6	c.G936A	p.Q312Q	.	.	421	58	516	1	.	46
CUL5	8065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	107920728	107920728	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CUL5	NM_003478	exon4	c.A346T	p.I116F	.	.	124	11	113	0	.	227
CYB561D1	284613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110038869	110038871	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYB561D1	NM_001134400	exon3	c.744_746del	p.248_249del	.	.	128	45	204	0	.	90
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767486	105767486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYLC2	NM_001340	exon5	c.A573T	p.K191N	.	.	166	44	130	0	.	91
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219679131	219679131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYP27A1	NM_000784	exon7	c.C1213T	p.R405W	.	.	84	11	136	0	.	91
CYP2D7P1	1564	broad.mit.edu	37	22	42538029	42538029	+	RNA	SNP	A	A	G	rs1058167	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	.	.	.	.	.	.	88	4	363	1	A|0.411;G|0.589	.
DBN1	1627	ucsc.edu;bcgsc.ca	37	5	176885499	176885499	+	Missense_Mutation	SNP	T	T	C	rs2544809	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DBN1	NM_080881	exon13	c.A1342G	p.I448V	.	.	39	8	527	2	T|0.522;C|0.478	587
DCAF4L1	285429	bcgsc.ca	37	4	41984118	41984118	+	Silent	SNP	C	C	T	rs2660320	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DCAF4L1	NM_001029955	exon1	c.C309T	p.S103S	.	.	131	6	390	0	C|0.375;T|0.625	23
DCAF8	50717	bcgsc.ca	37	1	160209874	160209885	+	In_Frame_Del	DEL	CTCTTCTTCCTC	CTCTTCTTCCTC	-	rs199748027		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	CTCTTCTTCCTC	CTCTTCTTCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DCAF8	NM_015726	exon4	c.325_336del	p.109_112del	.	.	32	5	105	0	-|0.008;|0.000	92
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	140301984	140301984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DENND2A	NM_015689	exon1	c.G214T	p.E72X	.	.	94	37	179	0	.	138
DLL4	54567	bcgsc.ca	37	15	41227307	41227307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DLL4	NM_019074	exon8	c.G1232T	p.C411F	.	.	2	2	47	0	.	636
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13871081	13871081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DNAH5	NM_001369	exon24	c.C3629T	p.T1210I	.	.	235	100	325	0	.	182
DNAJC19	131118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180706002	180706002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DNAJC19	NM_145261	exon2	c.G19T	p.A7S	.	.	217	24	250	0	.	226
DOCK3	1795	broad.mit.edu;bcgsc.ca	37	3	51273797	51273797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DOCK3	NM_004947	exon20	c.A1939G	p.T647A	.	.	169	6	146	0	.	22
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207527925	207527925	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DYTN	NM_001093730	exon11	c.T1335C	p.N445N	.	.	165	44	229	0	.	23
EID1	23741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49170689	49170689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EID1	NM_014335	exon1	c.G316C	p.E106Q	.	.	50	4	124	0	.	91
EMB	133418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	49699137	49699137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EMB	NM_198449	exon6	c.A752T	p.E251V	.	.	269	85	378	0	.	90
EML1	2009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100361092	100361092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EML1	NM_001008707	exon7	c.G731T	p.W244L	.	.	66	18	107	0	.	138
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6904085	6904085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EMR1	NM_001256253	exon8	c.C841G	p.P281A	.	.	108	12	101	0	.	526
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15813579	15813579	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EPS8	NM_004447	exon10	c.A906G	p.K302K	.	.	75	15	71	0	.	94
EPT1	85465	broad.mit.edu	37	2	26597995	26597995	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	.	.	.	.	.	.	89	4	109	0	.	.
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56183107	56183107	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ERC2	NM_015576	exon5	c.C1203T	p.I401I	.	.	173	60	179	0	.	24
FAM160A1	729830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152498952	152498952	+	Silent	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001109977	exon5	c.A456T	p.G152G	.	.	135	37	240	0	.	.
FAM189A1	23359	bcgsc.ca	37	15	29418520	29418520	+	Missense_Mutation	SNP	C	C	T	rs2256273	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FAM189A1	NM_015307	exon9	c.G1178A	p.R393H	.	.	8	4	201	3	C|0.432;T|0.568	22
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34961245	34961245	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FAM47B	NM_152631	exon1	c.G297A	p.K99K	.	.	85	43	132	0	.	196
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	7867391	7867391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FASTKD3	NM_024091	exon2	c.A806T	p.K269I	.	.	33	5	18	0	.	156
FAT2	2196	bcgsc.ca	37	5	150947719	150947719	+	Silent	SNP	C	C	T	rs3734060	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FAT2	NM_001447	exon1	c.G774A	p.S258S	.	.	90	5	202	2	C|0.528;T|0.472	96
FBLN2	2199	bcgsc.ca	37	3	13679335	13679335	+	Silent	SNP	C	C	T	rs1061376	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FBLN2	NM_001004019	exon18	c.C3612T	p.D1204D	.	.	11	4	152	2	C|0.518;N|0.000	91
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024440	76024440	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FILIP1	NM_015687	exon5	c.G1108T	p.E370X	.	.	108	26	148	0	.	94
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54256750	54256750	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FIP1L1	NM_030917	exon7	c.G460C	p.E154Q	.	.	61	11	57	0	.	1083
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152283189	152283189	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FLG	NM_002016	exon3	c.T4173C	p.S1391S	.	.	183	61	205	1	.	106
FLNB	2317	bcgsc.ca	37	3	58112488	58112488	+	Silent	SNP	C	C	T	rs2362904	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FLNB	NM_001457	exon24	c.C4221T	p.P1407P	.	.	94	5	109	1	C|0.489;T|0.511	593
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39266353	39266353	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FREM2	NM_207361	exon1	c.C4872A	p.T1624T	.	.	111	22	204	0	.	100
G6PD	2539	ucsc.edu;bcgsc.ca	37	X	153764217	153764217	+	Missense_Mutation	SNP	C	C	T	rs1050828	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	G6PD	NM_000402	exon4	c.G292A	p.V98M	.	.	30	8	154	1	0|0.054;T|0.037	135
GABRR1	2569	bcgsc.ca	37	6	89907873	89907873	+	Silent	SNP	G	G	A	rs422751	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GABRR1	NM_002042	exon5	c.C438T	p.D146D	.	.	190	8	312	0	G|0.207;A|0.793	91
GARNL3	84253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130073954	130073954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GARNL3	NM_032293	exon3	c.G259A	p.V87M	.	.	186	23	143	0	.	516
GHSR	2693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172162985	172162985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GHSR	NM_198407	exon2	c.C1067A	p.S356Y	.	.	193	31	93	0	.	501
GJA9	81025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39340262	39340262	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GJA9	NM_030772	exon2	c.T1509C	p.N503N	.	.	142	62	133	0	.	22
GOSR2	9570	bcgsc.ca	37	17	45008537	45008537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GOSR2	NM_001012511	exon3	c.G167A	p.S56N	.	.	264	109	322	3	.	92
HAUS8	93323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17160925	17160925	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HAUS8	NM_033417	exon11	c.C991G	p.Q331E	.	.	51	21	127	0	.	90
HCG9	10255	ucsc.edu	37	6	29943067	29943067	+	RNA	SNP	G	G	A	rs6904029	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HCG9	.	.	.	.	.	.	28	5	183	1	G|0.745;A|0.255	68
HELZ2	85441	bcgsc.ca	37	20	62196182	62196182	+	Silent	SNP	G	G	C	rs3810488	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001037335	exon9	c.C3993G	p.A1331A	.	.	7	3	69	0	A|0.001;C|0.168;G|0.831	.
HHIP	64399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145567924	145567924	+	Missense_Mutation	SNP	G	G	A	rs199961348		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HHIP	NM_022475	exon1	c.G97A	p.G33R	.	.	43	18	207	0	.	283
HIST1H2BD	3017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	26158526	26158526	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HIST1H2BD	NM_021063	exon1	c.C129G	p.Y43X	.	.	104	13	201	0	.	70
HK3	3101	bcgsc.ca	37	5	176314459	176314459	+	Silent	SNP	G	G	A	rs2278492	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HK3	NM_002115	exon11	c.C1593T	p.D531D	.	.	5	4	56	1	G|0.694;A|0.306	294
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220307815	220307816	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IARS2	NM_018060	exon15	c.1909_1910del	p.637_637del	.	.	120	48	126	0	.	94
IFNA17	3451	bcgsc.ca	37	9	21227893	21227893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IFNA17	NM_021268	exon1	c.G280A	p.E94K	.	.	236	84	262	3	.	90
IFNGR1	3459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137522034	137522034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IFNGR1	NM_000416	exon6	c.T845C	p.I282T	.	.	152	9	117	0	.	91
IFT140	9742	bcgsc.ca	37	16	1573890	1573890	+	Missense_Mutation	SNP	G	G	A	rs2235638	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IFT140	NM_014714	exon25	c.C3209T	p.A1070V	.	.	7	3	68	0	G|0.941;A|0.059	95
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10791742	10791742	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ILF3	NM_017620	exon10	c.C1005T	p.G335G	.	.	35	11	107	0	.	93
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62267337	62267337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	INADL	NM_176877	exon12	c.C1445G	p.T482S	.	.	261	47	194	0	.	94
INHBC	3626	ucsc.edu;bcgsc.ca	37	12	57843711	57843711	+	Missense_Mutation	SNP	G	G	A	rs2229357	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	INHBC	NM_005538	exon2	c.G965A	p.R322Q	.	.	22	4	89	1	G|0.838;A|0.162	514
IQSEC3	440073	bcgsc.ca	37	12	274647	274647	+	Silent	SNP	T	T	C	rs4980859	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IQSEC3	NM_001170738	exon10	c.T2757C	p.F919F	.	.	115	6	204	1	T|0.740;C|0.260	560
IRF2BPL	64207	ucsc.edu;bcgsc.ca	37	14	77492891	77492891	+	Silent	SNP	G	G	A	rs879027	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IRF2BPL	NM_024496	exon1	c.C1245T	p.Y415Y	.	.	26	4	143	0	G|0.586;A|0.414	90
ITIH4	3700	ucsc.edu	37	3	52860936	52860936	+	Silent	SNP	C	C	T	rs2276817	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ITIH4	NM_001166449	exon4	c.G390A	p.V130V	.	.	31	4	184	2	C|0.752;T|0.248	46
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33652419	33652419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ITPR3	NM_002224	exon38	c.C5091A	p.N1697K	.	.	38	11	211	0	.	1085
ITSN2	50618	broad.mit.edu	37	2	24509091	24509091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ITSN2	NM_147152	exon16	c.A1853G	p.N618S	.	.	139	5	121	0	.	539
KDM6B	23135	ucsc.edu;bcgsc.ca	37	17	7751676	7751676	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	KDM6B	NM_001080424	exon11	c.C2070T	p.I690I	.	.	11	4	85	0	.	205
KLB	152831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	39439384	39439384	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	KLB	NM_175737	exon3	c.T1374C	p.T458T	.	.	123	11	155	0	.	69
KY	339855	bcgsc.ca	37	3	134369716	134369716	+	Silent	SNP	C	C	A	rs13060869	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	KY	NM_178554	exon1	c.G87T	p.T29T	.	.	8	3	124	0	C|0.832;A|0.168	24
LBP	3929	hgsc.bcm.edu;broad.mit.edu	37	20	36999383	36999383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LBP	NM_004139	exon11	c.1151delC	p.A384fs	.	.	186	15	204	0	.	91
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88478564	88478564	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LDB3	NM_001171610	exon12	c.1953delC	p.S651fs	.	.	60	24	151	0	.	92
LEPREL4	10609	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39959557	39959557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LEPREL4	NM_006455	exon7	c.G1273A	p.G425S	.	.	11	6	217	1	.	90
LHX2	9355	broad.mit.edu	37	9	126783581	126783581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LHX2	NM_004789	exon4	c.C931A	p.Q311K	.	.	6	2	58	1	.	90
LILRA2	11027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55085353	55085353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LILRA2	NM_001130917	exon1	c.C8T	p.P3L	.	.	92	25	211	1	.	91
LOC96610	0	broad.mit.edu;bcgsc.ca	37	22	22664185	22664185	+	RNA	SNP	A	A	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	.	.	.	.	.	.	245	10	424	1	.	.
LPL	4023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	19809442	19809442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LPL	NM_000237	exon3	c.T412A	p.F138I	.	.	73	7	192	0	.	92
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105509410	105509410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRP12	NM_013437	exon5	c.A1370C	p.H457P	.	.	96	13	155	0	.	90
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	141055500	141055500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRP1B	NM_018557	exon84	c.C12844A	p.P4282T	.	.	257	24	361	0	.	311
LRRC37B	114659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30376212	30376212	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRRC37B	NM_052888	exon10	c.C2475T	p.T825T	.	.	1144	685	827	4	.	92
LRRC4	64101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127670230	127670230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRRC4	NM_022143	exon2	c.G464A	p.R155H	.	.	30	16	81	0	.	154
LRRC69	100130742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92201773	92201773	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001129890	exon6	c.A675G	p.E225E	.	.	70	19	80	0	.	.
LSAMP	4045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	115805264	115805264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LSAMP	NM_002338	exon2	c.C295G	p.Q99E	.	.	270	105	321	0	.	90
LYPD6	130574	broad.mit.edu;bcgsc.ca	37	2	150294299	150294299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LYPD6	NM_194317	exon2	c.G77A	p.R26Q	.	.	56	35	132	1	.	90
MAGEA12	4111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	151900290	151900290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MAGEA12	NM_005367	exon2	c.C511A	p.R171S	.	.	311	245	398	2	.	131
MAP2K2	5605	ucsc.edu	37	19	4101062	4101062	+	Silent	SNP	G	G	T	rs11539507		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MAP2K2	NM_030662	exon6	c.C660A	p.I220I	.	.	25	4	271	0	.	510
MAST2	23139	bcgsc.ca	37	1	46499526	46499526	+	Missense_Mutation	SNP	A	A	G	rs1052607	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MAST2	NM_015112	exon27	c.A3590G	p.K1197R	.	.	213	7	611	2	A|0.956;G|0.044	581
MCCD1	401250	bcgsc.ca	37	6	31497706	31497706	+	Silent	SNP	C	C	T	rs2075582	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MCCD1	NM_001011700	exon2	c.C354T	p.G118G	.	.	78	5	238	0	C|0.215;T|0.785	90
MED24	9862	broad.mit.edu	37	17	38209555	38209555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MED24	NM_014815	exon3	c.C209T	p.S70F	.	.	81	4	70	1	.	187
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12069707	12069707	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MFN2	NM_014874	exon18	c.C2128G	p.L710V	.	.	95	13	182	0	.	91
MKI67	4288	ucsc.edu;bcgsc.ca	37	10	129899578	129899578	+	Missense_Mutation	SNP	T	T	C	rs8473	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MKI67	NM_002417	exon14	c.A9649G	p.K3217E	.	.	55	6	102	1	T|0.519;C|0.481	519
MLL	4297	broad.mit.edu	37	11	118390476	118390476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MLL	NM_001197104	exon32	c.C11290T	p.H3764Y	.	.	86	3	148	1	.	1255
MRPL2	51069	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43023661	43023661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MRPL2	NM_015950	exon5	c.G605A	p.R202Q	.	.	130	11	158	2	.	90
MSMB	4477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	51562361	51562361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MSMB	NM_138634	exon3	c.C200T	p.T67I	.	.	98	7	101	0	.	92
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9712791	9712791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MTMR14	NM_022485	exon6	c.614delA	p.Y205fs	.	.	146	66	150	0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9018487	9018487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC16	NM_024690	exon24	c.C37687T	p.R12563C	.	.	177	12	306	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9038131	9038131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC16	NM_024690	exon8	c.G36145T	p.V12049L	.	.	114	8	103	0	.	566
MUC2	4583	bcgsc.ca	37	11	1081757	1081757	+	Missense_Mutation	SNP	G	G	C	rs57737240	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC2	NM_002457	exon13	c.G1685C	p.S562T	.	.	19	5	315	7	G|0.707;C|0.293	90
MUC5B	727897	bcgsc.ca	37	11	1272245	1272245	+	Missense_Mutation	SNP	C	C	T	rs2943511	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_002458	exon31	c.C14135T	p.T4712M	.	.	65	6	1164	12	C|0.930;T|0.070	.
MX2	4600	broad.mit.edu;ucsc.edu	37	21	42770846	42770846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MX2	NM_002463	exon9	c.G1172T	p.G391V	.	.	40	4	136	0	.	92
MYH8	4626	broad.mit.edu	37	17	10296222	10296222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MYH8	NM_002472	exon37	c.C5389G	p.Q1797E	.	.	34	3	155	0	.	101
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27421037	27421037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MYO18A	NM_078471	exon31	c.T4782A	p.D1594E	.	.	63	29	108	0	.	22
MYO3B	140469	broad.mit.edu	37	2	171262094	171262094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MYO3B	NM_001083615	exon21	c.G2471A	p.R824K	.	.	82	4	88	0	.	530
MYO7A	4647	ucsc.edu	37	11	76893104	76893104	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MYO7A	NM_001127179	exon24	c.C3012T	p.F1004F	.	.	38	4	210	1	.	138
NBPF22P	285622	ucsc.edu	37	5	85592421	85592421	+	RNA	SNP	C	C	T	rs62373407		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	.	.	.	.	.	.	12	5	10	0	C|0.798;T|0.202	.
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	115754838	115754838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NDST4	NM_022569	exon12	c.G2320C	p.D774H	.	.	104	9	192	0	.	94
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	260	81	296	2	A|0.500;T|0.500	90
NMRAL1	57407	mdanderson.org	37	16	4511956	4511956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NMRAL1	NM_020677	exon6	c.C725A	p.T242N	.	.	8	3	94	1	.	91
NPAS1	4861	bcgsc.ca	37	19	47543774	47543774	+	Silent	SNP	G	G	A	rs3745615	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NPAS1	NM_002517	exon8	c.G1035A	p.Q345Q	.	.	7	4	279	2	G|0.412;A|0.588	90
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131764256	131764256	+	Splice_Site	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NUP188	NM_015354	exon36	c.4137+1G>A	.	.	.	49	7	134	0	.	207
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113444385	113444385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OAS2	NM_002535	exon8	c.G1636T	p.V546L	.	.	118	43	132	0	.	91
OGFOD3	79701	ucsc.edu;bcgsc.ca	37	17	80350331	80350331	+	Silent	SNP	G	G	A	rs11903	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_024648	exon9	c.C903T	p.I301I	.	.	15	4	257	4	G|0.764;A|0.236	.
OR4K2	390431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20344515	20344515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR4K2	NM_001005501	exon1	c.T89G	p.V30G	.	.	259	35	356	4	.	72
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4944787	4944787	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR51G1	NM_001005237	exon1	c.T783C	p.S261S	.	.	113	9	199	0	.	70
OR52M1	119772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	4566482	4566482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR52M1	NM_001004137	exon1	c.G62A	p.G21E	.	.	96	7	115	2	.	68
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14952528	14952528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR7A10	NM_001005190	exon1	c.C162A	p.H54Q	.	.	112	8	126	0	.	68
OR9G9	504191	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56468383	56468383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001013358	exon1	c.G520A	p.D174N	.	.	175	13	239	1	.	.
OXA1L	5018	hgsc.bcm.edu;bcgsc.ca	37	14	23235798	23235798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OXA1L	NM_005015	exon1	c.C68T	p.P23L	.	.	84	4	195	0	.	204
PCDH12	51294	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141337225	141337225	+	Silent	SNP	A	A	G	rs164077	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PCDH12	NM_016580	exon1	c.T192C	p.A64A	.	.	16	6	189	0	A|0.272;G|0.728	93
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55955547	55955547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PCDH15	NM_001142763	exon12	c.C1216G	p.Q406E	.	.	89	45	139	0	.	193
PCDH19	57526	ucsc.edu;bcgsc.ca	37	X	99663194	99663194	+	Silent	SNP	G	G	T	rs41300169	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PCDH19	NM_001184880	exon1	c.C402A	p.I134I	.	.	25	7	123	2	G|0.870;T|0.130	110
PDZRN3	23024	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	73651611	73651611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PDZRN3	NM_015009	exon3	c.A812G	p.D271G	.	.	130	19	140	2	.	232
PGAM5	192111	bcgsc.ca	37	12	133295353	133295353	+	Missense_Mutation	SNP	C	C	T	rs12423651	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PGAM5	NM_138575	exon6	c.C725T	p.P242L	.	.	16	3	140	1	C|0.929;T|0.071	90
PIK3C2G	5288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18747452	18747452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PIK3C2G	NM_004570	exon29	c.C3913T	p.L1305F	.	.	180	39	134	2	.	1312
PJA2	9867	hgsc.bcm.edu;broad.mit.edu	37	5	108714875	108714875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PJA2	NM_014819	exon4	c.T313G	p.C105G	.	.	82	5	96	0	.	92
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20474797	20474797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLA2G2F	NM_022819	exon5	c.A539G	p.Y180C	.	.	119	40	318	0	.	91
PLCG2	5336	bcgsc.ca	37	16	81944222	81944222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLCG2	NM_002661	exon18	c.T1831C	p.Y611H	.	.	2	2	73	0	.	892
PLEKHG6	55200	broad.mit.edu;bcgsc.ca	37	12	6436779	6436780	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLEKHG6	NM_001144856	exon15	c.2030_2031insA	p.R677fs	.	.	9	5	49	0	.	295
PLXNB3	5365	bcgsc.ca	37	X	153042419	153042419	+	Silent	SNP	G	G	A	rs34966902	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLXNB3	NM_001163257	exon30	c.G4980A	p.R1660R	.	.	7	4	147	2	G|0.439;A|0.561	130
PPL	5493	bcgsc.ca	37	16	4934549	4934549	+	Silent	SNP	G	G	A	rs1049208	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PPL	NM_002705	exon22	c.C4107T	p.S1369S	.	.	2	2	93	0	G|0.590;A|0.410	95
PRADC1	84279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73456048	73456048	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PRADC1	NM_032319	exon4	c.C321T	p.H107H	.	.	28	10	120	0	.	90
PRDM6	93166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122435627	122435627	+	Missense_Mutation	SNP	G	G	A	rs1008058	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001136239	exon3	c.G871A	p.A291T	.	.	18	5	249	0	G|0.784;A|0.216	.
PRKAA2	5563	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	57173335	57173335	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PRKAA2	NM_006252	exon9	c.C1608A	p.T536T	.	.	158	40	148	1	.	885
PROP1	5626	bcgsc.ca	37	5	177422908	177422908	+	Silent	SNP	A	A	G	rs1135320	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PROP1	NM_006261	exon1	c.T27C	p.A9A	.	.	15	4	67	0	A|0.579;G|0.421	90
PSAPL1	768239	bcgsc.ca	37	4	7436486	7436486	+	Missense_Mutation	SNP	C	C	A	rs11548325	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PSAPL1	NM_001085382	exon1	c.G121T	p.A41S	.	.	7	3	158	0	C|0.820;A|0.180	68
QPCTL	54814	bcgsc.ca	37	19	46206262	46206262	+	Silent	SNP	G	G	A	rs17850756	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	QPCTL	NM_017659	exon7	c.G1104A	p.L368L	.	.	51	4	418	3	G|0.727;A|0.273	91
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37729417	37729417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAB11FIP1	NM_001002814	exon4	c.A2903G	p.D968G	.	.	106	6	292	0	.	92
RAB19	401409	ucsc.edu;bcgsc.ca	37	7	140125861	140125861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAB19	NM_001008749	exon4	c.G565T	p.G189W	.	.	66	18	165	2	.	22
RAB6B	51560	bcgsc.ca	37	3	133547692	133547692	+	Silent	SNP	G	G	A	rs2293373	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAB6B	NM_016577	exon8	c.C567T	p.I189I	.	.	6	3	54	0	G|0.856;A|0.144	228
RABL2A	11159	broad.mit.edu	37	2	114398990	114398990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RABL2A	NM_013412	exon7	c.A467T	p.Y156F	.	.	315	15	526	1	.	86
RALYL	138046	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	85785541	85785541	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RALYL	NM_001100391	exon7	c.C633G	p.T211T	.	.	190	18	186	1	.	23
RAP1GAP2	23108	ucsc.edu;bcgsc.ca	37	17	2929674	2929674	+	Silent	SNP	T	T	C	rs12941934	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAP1GAP2	NM_015085	exon21	c.T1896C	p.R632R	.	.	12	4	173	2	T|0.420;C|0.580	1
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160262813	160262813	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAPGEF2	NM_014247	exon14	c.A2149T	p.S717C	.	.	172	45	257	0	.	637
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35684006	35684006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RBL1	NM_183404	exon11	c.G1417A	p.E473K	.	.	99	12	59	0	.	419
RHBG	57127	ucsc.edu;bcgsc.ca	37	1	156347131	156347131	+	Missense_Mutation	SNP	G	G	A	rs2245623	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RHBG	NM_020407	exon2	c.G227A	p.G76D	.	.	20	4	276	3	G|0.713;A|0.287	92
RHOBTB3	22836	bcgsc.ca;mdanderson.org	37	5	95067575	95067575	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RHOBTB3	NM_014899	exon2	c.C15T	p.I5I	.	.	8	3	142	0	.	228
RNF213	57674	broad.mit.edu;bcgsc.ca	37	17	78318789	78318789	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RNF213	NM_001256071	exon29	c.T6654C	p.F2218F	.	.	424	16	170	1	.	577
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83359655	83359655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RPS6KA6	NM_014496	exon17	c.A1466G	p.D489G	.	.	174	155	106	0	.	615
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62324289	62324289	+	Silent	SNP	C	C	T	rs3848672	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RTEL1	NM_032957	exon29	c.C2856T	p.F952F	.	.	11	4	135	1	C|0.849;T|0.151	44
SALL4	57167	hgsc.bcm.edu;broad.mit.edu	37	20	50406807	50406807	+	Missense_Mutation	SNP	C	C	A	rs41274696	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SALL4	NM_020436	exon2	c.G2215T	p.A739S	.	.	80	4	138	0	C|0.998;A|0.002	92
SCN2A	6326	hgsc.bcm.edu	37	2	166223741	166223741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SCN2A	NM_001040143	exon18	c.T3535C	p.F1179L	.	.	84	4	119	0	.	142
SCRN1	9805	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29980369	29980369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SCRN1	NM_001145514	exon5	c.C728G	p.S243C	.	.	101	22	156	1	.	92
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	84727158	84727158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SEMA3D	NM_152754	exon2	c.T275C	p.L92P	.	.	159	16	178	0	.	138
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150900277	150900277	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SETDB1	NM_012432	exon2	c.G87A	p.V29V	.	.	378	32	322	0	.	228
SFSWAP	6433	ucsc.edu	37	12	132209979	132209979	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SFSWAP	NM_001261411	exon5	c.C636T	p.I212I	.	.	55	5	235	1	.	91
SGOL2	151246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201437093	201437093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SGOL2	NM_001160046	exon7	c.G2024A	p.R675K	.	.	162	16	181	1	.	94
SH2D2A	9047	bcgsc.ca	37	1	156784982	156784982	+	Missense_Mutation	SNP	T	T	C	rs926103	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SH2D2A	NM_003975	exon3	c.A155G	p.N52S	.	.	58	4	353	2	T|0.445;C|0.555	90
SHROOM2	357	bcgsc.ca	37	X	9905342	9905342	+	Silent	SNP	A	A	G	rs2073945	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SHROOM2	NM_001649	exon7	c.A3756G	p.T1252T	.	.	6	3	75	0	A|0.762;0|0.003	198
SIPA1L3	23094	bcgsc.ca	37	19	38652993	38652993	+	Silent	SNP	C	C	T	rs332864	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SIPA1L3	NM_015073	exon14	c.C3762T	p.S1254S	.	.	17	5	301	2	C|0.680;T|0.320	91
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22380967	22380967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC17A6	NM_020346	exon4	c.G467T	p.G156V	.	.	94	11	102	0	.	580
SLC22A11	55867	bcgsc.ca	37	11	64332779	64332779	+	Missense_Mutation	SNP	G	G	T	rs75933978	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC22A11	NM_018484	exon6	c.G1028T	p.R343L	.	.	3	3	38	0	G|0.998;T|0.002	91
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	118175766	118175766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC30A8	NM_173851	exon6	c.G826T	p.E276X	.	.	42	22	67	0	.	229
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	118175765	118175765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC30A8	NM_173851	exon6	c.G825A	p.M275I	.	.	42	22	68	0	.	229
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162807235	162807235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC4A10	NM_001178015	exon19	c.A2418T	p.L806F	.	.	167	32	160	0	.	229
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33770885	33770885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLFN13	NM_144682	exon4	c.G1121A	p.S374N	.	.	183	51	83	0	.	91
SMYD1	150572	bcgsc.ca	37	2	88387403	88387403	+	Silent	SNP	C	C	A	rs1542088	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SMYD1	NM_198274	exon3	c.C337A	p.R113R	.	.	12	5	222	1	C|0.561;A|0.439	229
SOHLH1	402381	bcgsc.ca	37	9	138591266	138591266	+	Silent	SNP	A	A	G	rs559326	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SOHLH1	NM_001012415	exon1	c.T48C	p.P16P	.	.	13	6	179	1	A|0.143;G|0.857	135
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106959827	106959827	+	Missense_Mutation	SNP	C	C	T	rs202188584	alternate_allele	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	SORCS3,brain,glioma,-2	SORCS3	NM_014978	exon15	c.C2080T	p.R694W	.	.	76	27	218	0	.	99
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	214727353	214727353	+	Splice_Site	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SPAG16	NM_024532	exon11	c.1214+1G>T	.	.	.	85	11	160	0	.	188
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	104	64	139	1	A|0.000;C|0.697;T|0.303	45
SRP72	6731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57344756	57344756	+	Splice_Site	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SRP72	NM_006947	exon8	c.768-2A>G	.	.	.	226	93	374	2	.	116
SRSF5	6430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70237779	70237779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SRSF5	NM_001039465	exon7	c.A508T	p.N170Y	.	.	92	46	84	0	.	226
SSFA2	6744	broad.mit.edu;bcgsc.ca	37	2	182780658	182780658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SSFA2	NM_001130445	exon11	c.C2291A	p.T764N	.	.	118	6	131	1	.	153
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10924837	10924837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SYCP2L	NM_001040274	exon15	c.C1181T	p.S394L	.	.	103	33	69	0	.	24
TAAR2	9287	broad.mit.edu	37	6	132938371	132938371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TAAR2	NM_001033080	exon2	c.C974T	p.A325V	.	.	150	6	169	0	.	91
TADA2A	6871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35836972	35836972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TADA2A	NM_001488	exon16	c.A1217G	p.N406S	.	.	159	24	111	0	.	230
TAF3	83860	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	8006085	8006085	+	Silent	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TAF3	NM_031923	exon3	c.G612T	p.T204T	.	.	144	51	270	2	.	69
TAS2R10	50839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10978718	10978718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TAS2R10	NM_023921	exon1	c.G151A	p.A51T	.	.	91	35	98	0	.	90
TBR1	10716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162276744	162276744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TBR1	NM_006593	exon5	c.A1166T	p.K389I	.	.	127	70	130	0	.	91
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	115118767	115118767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TBX3	NM_005996	exon2	c.G574T	p.A192S	.	.	299	113	368	1	.	93
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	183650121	183650121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001080477	exon13	c.G2372A	p.G791E	.	.	106	6	168	0	.	.
TERT	7015	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1278821	1278821	+	Missense_Mutation	SNP	C	C	A	rs150819225	byfrequency;alternate_allele	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TERT	NM_001193376	exon6	c.G2221T	p.V741L	.	.	33	5	338	0	C|1.000;T|0.000	1272
TET3	200424	bcgsc.ca	37	2	74274415	74274415	+	Silent	SNP	C	C	T	rs61742889	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_144993	exon1	c.C966T	p.P322P	.	.	9	4	128	1	C|0.985;T|0.015	.
TEX33	339669	broad.mit.edu;bcgsc.ca	37	22	37398195	37398195	+	Missense_Mutation	SNP	C	C	T	rs743749	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001163857	exon3	c.G172A	p.A58T	.	.	10	3	80	1	C|0.715;T|0.285	.
THG1L	54974	ucsc.edu;bcgsc.ca	37	5	157158553	157158553	+	Silent	SNP	C	C	T	rs2270817	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	THG1L	NM_017872	exon1	c.C105T	p.F35F	.	.	53	5	245	0	C|0.913;T|0.087	90
TMC4	147798	broad.mit.edu	37	19	54667505	54667505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMC4	NM_001145303	exon8	c.C1246T	p.P416S	.	.	99	6	165	0	.	91
TMC7	79905	bcgsc.ca	37	16	19067933	19067933	+	Silent	SNP	G	G	A	rs17854511	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMC7	NM_024847	exon14	c.G1941A	p.T647T	.	.	98	7	322	1	G|0.511;A|0.489	93
TMEM132C	92293	bcgsc.ca	37	12	129189702	129189702	+	Missense_Mutation	SNP	C	C	G	rs12426596	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMEM132C	NM_001136103	exon9	c.C2189G	p.T730S	.	.	8	3	82	0	C|0.941;G|0.059	68
TMEM171	134285	ucsc.edu;bcgsc.ca	37	5	72419267	72419267	+	Missense_Mutation	SNP	T	T	C	rs638333	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMEM171	NM_173490	exon2	c.T67C	p.F23L	.	.	84	8	283	0	T|0.788;C|0.212	68
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83290361	83290361	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMTC2	NM_152588	exon3	c.G1419A	p.R473R	.	.	124	17	60	0	.	92
TNS1	7145	ucsc.edu;bcgsc.ca	37	2	218695102	218695102	+	Missense_Mutation	SNP	G	G	A	rs3796028	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TNS1	NM_022648	exon21	c.C3010T	p.R1004W	.	.	41	4	93	0	G|0.646;A|0.354	156
TNXB	7148	bcgsc.ca	37	6	32010272	32010272	+	Missense_Mutation	SNP	T	T	A	rs76250508	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TNXB	NM_019105	exon40	c.A12164T	p.N4055I	.	.	14	4	207	2	T|0.754;A|0.246	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577142	7577142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	TP53,NS,carcinoma,+1	TP53	NM_000546	exon8	c.G796A	p.G266R	.	.	60	7	123	0	.	70225
TPPP	11076	bcgsc.ca	37	5	665295	665295	+	Silent	SNP	A	A	G	rs61731455	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TPPP	NM_007030	exon4	c.T582C	p.D194D	.	.	2	2	128	1	A|0.870;G|0.130	90
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	92436115	92436115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TRIP11	NM_004239	exon21	c.C5842G	p.L1948V	.	.	221	9	270	0	.	1400
TRPM2	7226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45811268	45811268	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TRPM2	NM_003307	exon11	c.C1554T	p.T518T	.	.	132	16	273	1	.	92
TSPAN11	441631	bcgsc.ca	37	12	31135579	31135579	+	Missense_Mutation	SNP	T	T	C	rs2075333	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TSPAN11	NM_001080509	exon6	c.T569C	p.V190A	.	.	5	3	38	0	T|0.327;C|0.673	68
TTC21A	199223	broad.mit.edu	37	3	39156203	39156203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TTC21A	NM_145755	exon6	c.A686G	p.D229G	.	.	105	5	151	0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179404631	179404631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TTN	NM_001267550	exon352	c.G98161A	p.V32721I	.	.	127	55	172	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179596523	179596523	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TTN	NM_001267550	exon58	c.C17079T	p.S5693S	.	.	111	24	134	0	.	636
TULP4	56995	mdanderson.org	37	6	158735070	158735070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TULP4	NM_020245	exon1	c.G22T	p.G8W	.	.	31	8	74	0	.	91
UBA6	55236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68497490	68497490	+	Splice_Site	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	UBA6	NM_018227	exon26	c.2195-1G>T	.	.	.	137	45	123	1	.	90
UBR4	23352	broad.mit.edu	37	1	19433179	19433179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	UBR4	NM_020765	exon83	c.C12277T	p.R4093C	.	.	91	3	126	0	.	612
USP10	9100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84801856	84801856	+	Silent	SNP	G	G	A	rs185085167	by1000genomes	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	USP10	NM_001272075	exon12	c.G1902A	p.T634T	.	.	92	29	175	0	G|0.999;A|0.000	636
VPS4A	27183	broad.mit.edu	37	16	69355035	69355035	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_013245	exon9	c.C933T	p.P311P	.	.	15	2	147	0	.	.
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168105466	168105466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	XIRP2	NM_152381	exon9	c.C7564A	p.H2522N	.	.	93	49	95	0	.	104
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	72017915	72017915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZFC3H1	NM_144982	exon23	c.G4475A	p.G1492E	.	.	80	5	59	0	.	138
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35857909	35857909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZMYM4	NM_005095	exon16	c.C2684A	p.A895D	.	.	226	95	225	0	.	291
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123601551	123601551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF202	NM_003455	exon4	c.G46A	p.E16K	.	.	96	21	168	0	.	91
ZNF234	10780	broad.mit.edu	37	19	44661594	44661594	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_006630	exon6	c.G1425A	p.Q475Q	.	.	53	4	101	0	.	.
ZNF366	167465	ucsc.edu;bcgsc.ca	37	5	71756102	71756102	+	Silent	SNP	G	G	A	rs7721922	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF366	NM_152625	exon2	c.C1222T	p.L408L	.	.	42	4	212	1	G|0.553;A|0.447	91
ZNF550	162972	bcgsc.ca	37	19	58058536	58058536	+	Missense_Mutation	SNP	A	A	G	rs1548476	byfrequency	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF550	.	.	.	.	.	.	172	7	231	0	A|0.372;G|0.628	90
ZNF658	26149	broad.mit.edu;mdanderson.org	37	9	40774978	40774978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF658	NM_033160	exon5	c.G297T	p.W99C	.	.	78	7	39	0	.	45
