Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AFF4	27125	bcgsc.ca	37	5	132269980	132269980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	AFF4	NM_014423	exon3	c.777delC	p.P259fs	.	.	372	157	276	1	.	229
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116693445	116693445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	APOA4	NM_000482	exon2	c.A106G	p.S36G	.	.	119	41	97	0	.	22
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111932983	111932983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ARHGEF7	NM_001113511	exon16	c.G1747A	p.G583R	.	.	119	32	120	0	.	232
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106299	27106300	+	Frame_Shift_Ins	INS	-	-	CTGGA	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ARID1A	NM_006015	exon20	c.5910_5911insCTGGA	p.L1970fs	.	.	105	23	103	0	.	584
ASH1L	55870	hgsc.bcm.edu	37	1	155385687	155385687	+	Silent	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ASH1L	NM_018489	exon6	c.C5856A	p.P1952P	.	.	89	4	59	0	.	234
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193159259	193159259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ATP13A4	NM_032279	exon20	c.C2435A	p.P812Q	.	.	149	64	164	0	.	92
B3GALT1	8708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168725799	168725799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	B3GALT1	NM_020981	exon2	c.A250T	p.I84F	.	.	76	15	109	0	.	94
BAIAP3	8938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1384728	1384728	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BAIAP3	NM_003933	exon1	c.C66A	p.I22I	.	.	79	35	99	0	.	91
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	70840961	70840961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BDP1	NM_018429	exon32	c.A6659T	p.D2220V	.	.	82	17	101	0	.	92
BMS1	9790	broad.mit.edu	37	10	43312791	43312791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BMS1	NM_014753	exon15	c.A2429C	p.K810T	.	.	53	11	64	2	.	93
BPIFB6	128859	bcgsc.ca	37	20	31619489	31619489	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_174897	exon1	c.G36A	p.L12L	.	.	56	4	66	0	.	.
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105573357	105573357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	BVES	NM_001199563	exon4	c.T448A	p.C150S	.	.	161	54	136	0	.	90
C19orf55	148137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36256039	36256039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	C19orf55	NM_001039887	exon7	c.T731C	p.I244T	.	.	68	15	79	0	.	23
C1orf159	54991	broad.mit.edu	37	1	1025751	1025751	+	Missense_Mutation	SNP	C	C	T	rs75079403		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_017891	exon4	c.G130A	p.A44T	.	.	175	6	158	1	C|0.999;T|0.001	.
C7orf72	100130988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50136120	50136120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	C7orf72	NM_001161834	exon1	c.A439G	p.T147A	.	.	99	29	88	0	.	23
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1993990	1993990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CACNA2D4	NM_172364	exon11	c.G1216T	p.G406C	.	.	184	42	197	0	.	23
CARD11	84433	bcgsc.ca	37	7	2985551	2985551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CARD11	NM_032415	exon4	c.G260A	p.G87D	.	.	113	5	127	0	.	870
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14024108	14024108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CC2D1A	NM_017721	exon5	c.G506A	p.G169E	.	.	86	30	86	0	.	90
CCDC93	54520	bcgsc.ca	37	2	118771566	118771566	+	Silent	SNP	C	C	A	rs11545372	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCDC93	NM_019044	exon1	c.G6T	p.G2G	.	.	53	4	78	0	C|0.673;A|0.327	154
CCHCR1	54535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31113531	31113531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCHCR1	NM_001105564	exon11	c.G1635T	p.Q545H	.	.	78	25	92	0	.	91
CCNE1	898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30311721	30311721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CCNE1	NM_001238	exon7	c.G575C	p.G192A	.	.	89	22	117	0	.	1270
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21765180	21765180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CDH12	NM_004061	exon12	c.T1422A	p.N474K	.	.	82	23	65	1	.	92
CDH18	1016	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19747259	19747259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CDH18	NM_001167667	exon4	c.T315A	p.D105E	.	.	144	28	159	1	.	159
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42212653	42212653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CEACAM5	NM_004363	exon1	c.G3A	p.M1I	.	.	45	7	67	0	.	92
CENPE	1062	ucsc.edu	37	4	104098202	104098202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CENPE	NM_001813	exon14	c.C1244A	p.A415D	.	.	29	4	27	0	.	277
CMYA5	202333	bcgsc.ca	37	5	79028726	79028726	+	Missense_Mutation	SNP	A	A	G	rs13158477	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CMYA5	NM_153610	exon2	c.A4138G	p.I1380V	.	.	217	6	215	0	A|0.895;G|0.105	77
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	238255172	238255172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	COL6A3	NM_004369	exon32	c.G7066T	p.G2356X	.	.	91	21	102	0	.	526
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129951882	129951882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CPA4	NM_016352	exon10	c.A998T	p.K333M	.	.	127	34	99	0	.	515
CPVL	54504	broad.mit.edu;bcgsc.ca	37	7	29103758	29103758	+	Silent	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CPVL	NM_019029	exon11	c.A1056C	p.G352G	.	.	132	5	76	0	.	92
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113240991	113240991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CSMD3	NM_198123	exon70	c.A10958C	p.K3653T	.	.	33	19	37	0	.	1132
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	bycluster	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C110T	p.S37F	.	.	257	96	253	0	.	24361
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11384929	11384929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CTNND2	NM_001332	exon7	c.C1025T	p.S342F	.	.	28	9	26	0	.	293
CYP19A1	1588	bcgsc.ca	37	15	51529112	51529112	+	Silent	SNP	T	T	C	rs700518	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CYP19A1	NM_031226	exon4	c.A240G	p.V80V	.	.	78	5	103	1	T|0.612;C|0.388	93
CYP2A6	1548	bcgsc.ca	37	19	41355828	41355828	+	Missense_Mutation	SNP	C	C	T	rs77233796		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	CYP2A6	NM_000762	exon2	c.G238A	p.V80M	.	.	303	18	312	12	.	92
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51756896	51756896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DMXL2	NM_001174116	exon32	c.T7784G	p.L2595R	.	.	65	15	120	0	.	99
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124402341	124402341	+	Missense_Mutation	SNP	C	C	T	rs202063832		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DNAH10	NM_207437	exon63	c.C10859T	p.T3620I	.	.	174	8	176	0	C|0.999;T|0.001	95
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu	37	1	62995020	62995020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DOCK7	NM_001271999	exon30	c.C3709G	p.R1237G	.	.	117	6	94	0	.	92
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97981322	97981322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DPYD	NM_000110	exon13	c.G1700T	p.G567V	.	.	72	18	61	0	.	278
DTHD1	401124	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	36317997	36317997	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DTHD1	NM_001170700	exon7	c.C1854T	p.V618V	.	.	93	24	129	1	.	46
DUSP10	11221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	221879681	221879681	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DUSP10	NM_007207	exon3	c.C939T	p.T313T	.	.	110	55	118	1	.	659
DYRK1B	9149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40316849	40316849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	DYRK1B	NM_004714	exon10	c.A1489G	p.I497V	.	.	32	7	46	0	.	337
DZANK1	55184	broad.mit.edu	37	20	18433287	18433287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001099407	exon6	c.G515T	p.G172V	.	.	74	4	106	12	.	.
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	EBPL	NM_032565	exon4	c.C565G	p.L189V	.	.	136	5	167	1	.	90
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	EEF1B2	NM_021121	exon3	c.A127G	p.S43G	.	.	147	5	171	1	.	227
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8032602	8032602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ELAVL1	NM_001419	exon5	c.A503G	p.N168S	.	.	146	46	146	0	.	90
ELF2	1998	hgsc.bcm.edu;bcgsc.ca	37	4	139983133	139983133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ELF2	NM_006874	exon5	c.G512A	p.R171K	.	.	61	4	67	0	.	228
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89206879	89206879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	EML5	NM_183387	exon5	c.G563A	p.R188Q	.	.	125	35	121	0	.	93
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94861677	94861677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ENDOD1	NM_015036	exon2	c.C437G	p.P146R	.	.	254	81	262	0	.	68
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39817538	39817538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ERG	NM_001243432	exon4	c.T46G	p.L16V	.	.	291	56	248	0	.	848
ERN2	10595	broad.mit.edu	37	16	23702246	23702246	+	Missense_Mutation	SNP	G	G	C	rs56129167	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ERN2	NM_033266	exon22	c.C2831G	p.A944G	.	.	97	4	111	1	G|0.996;C|0.004	322
F5	2153	bcgsc.ca	37	1	169511555	169511555	+	Missense_Mutation	SNP	T	T	C	rs6032	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	F5	NM_000130	exon13	c.A2773G	p.K925E	.	.	203	9	180	2	T|0.758;C|0.242	157
FAM186A	121006	ucsc.edu	37	12	50745677	50745677	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FAM186A	NM_001145475	exon4	c.A4938T	p.A1646A	.	.	68	8	72	3	.	68
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150885501	150885501	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FAT2	NM_001447	exon23	c.C12675T	p.G4225G	.	.	32	8	19	0	.	96
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	8196686	8196686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FBN3	NM_032447	exon14	c.T1742C	p.I581T	.	.	54	8	42	0	.	100
FIG4	9896	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110086337	110086337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FIG4	NM_014845	exon14	c.A1556G	p.N519S	.	.	154	53	150	2	.	69
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152282032	152282032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FLG	NM_002016	exon3	c.C5330G	p.S1777C	.	.	434	99	365	0	.	106
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58116537	58116537	+	Missense_Mutation	SNP	T	T	A	rs80356511	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	FLNB	NM_001457	exon25	c.T4292A	p.L1431Q	.	.	101	20	109	0	.	593
GBP1	2633	bcgsc.ca	37	1	89525903	89525903	+	Missense_Mutation	SNP	C	C	T	rs143075008		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GBP1	NM_002053	exon3	c.G295A	p.E99K	.	.	219	8	167	1	C|0.984;T|0.016	92
GNAI1	2770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	79833109	79833109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GNAI1	NM_002069	exon5	c.T551C	p.I184T	.	.	150	40	102	0	.	653
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	.	.	286	0	181	0	A|0.333;C|0.333;G|0.333	91
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89943506	89943506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	GPR98	NM_032119	exon17	c.A3214G	p.I1072V	.	.	107	52	128	0	.	103
HDHD1	8226	bcgsc.ca	37	X	6995315	6995315	+	Silent	SNP	C	C	T	rs2379206	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HDHD1	NM_001135565	exon4	c.G525A	p.P175P	.	.	130	5	143	0	C|0.346;T|0.654	130
HDHD1	8226	bcgsc.ca	37	X	6995417	6995417	+	Silent	SNP	C	C	T	rs2379207	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HDHD1	NM_001135565	exon4	c.G423A	p.A141A	.	.	88	5	107	1	C|0.748;0|0.031	130
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197080657	197080657	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HECW2	NM_020760	exon28	c.A4539T	p.S1513S	.	.	58	21	43	0	.	668
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143095836	143095836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HIVEP2	NM_006734	exon5	c.T40G	p.S14A	.	.	237	89	177	0	.	95
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186120388	186120388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HMCN1	NM_031935	exon94	c.G14665C	p.G4889R	.	.	85	22	86	0	.	113
HRH2	3274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	175110734	175110734	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HRH2	NM_001131055	exon2	c.G498A	p.K166K	.	.	218	14	206	0	.	91
HSPA1L	3305	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778986	31778986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	HSPA1L	NM_005527	exon2	c.T764G	p.I255S	.	.	89	19	100	1	.	230
INO80B-WBP1	0	broad.mit.edu	37	2	74686130	74686130	+	RNA	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	.	.	.	.	.	.	65	3	72	0	.	.
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187540572	187540572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ITGAV	NM_002210	exon28	c.C2846A	p.S949Y	.	.	103	26	125	0	.	653
KCNN2	3781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	113798833	113798833	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KCNN2	NM_021614	exon4	c.C1089T	p.D363D	.	.	306	62	283	0	.	92
KCTD15	79047	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34302696	34302696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KCTD15	NM_024076	exon7	c.G694T	p.D232Y	.	.	51	8	86	1	.	91
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86526919	86526919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA1324L	NM_001142749	exon19	c.G2588A	p.C863Y	.	.	122	30	98	0	.	97
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73960550	73960550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA2022	NM_001008537	exon3	c.G3842T	p.G1281V	.	.	44	22	53	0	.	183
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5922603	5922603	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KIAA2026	NM_001017969	exon8	c.T3393C	p.G1131G	.	.	93	36	105	0	.	92
KRT8	3856	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	36	8	38	0	.	92
KRT8	3856	ucsc.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KRT8	NM_001256282	exon2	c.C151T	p.R51C	.	.	42	8	35	0	G|0.944;A|0.055	92
KRTAP4-6	81871	ucsc.edu	37	17	39296254	39296254	+	Silent	SNP	C	C	T	rs72483263		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_030976	exon1	c.G486A	p.P162P	.	.	55	10	36	6	C|0.500;T|0.500	.
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134338015	134338015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	KY	NM_178554	exon8	c.G685T	p.A229S	.	.	206	53	176	0	.	24
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6958645	6958645	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LAMA1	NM_005559	exon55	c.T7795C	p.L2599L	.	.	89	24	98	0	.	149
LCP2	3937	hgsc.bcm.edu;bcgsc.ca	37	5	169689860	169689860	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LCP2	NM_005565	exon12	c.G804A	p.S268S	.	.	195	31	175	0	.	23
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	169689858	169689859	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LCP2	NM_005565	exon12	c.806_807insA	p.I269fs	.	.	194	30	179	0	.	23
LOXL2	4017	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23217774	23217774	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	LOXL2	NM_002318	exon3	c.C360T	p.P120P	.	.	66	14	52	1	.	272
LPPR5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99358645	99358645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001037317	exon6	c.T949C	p.F317L	.	.	115	52	116	0	.	.
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu	37	17	12013730	12013731	+	In_Frame_Ins	INS	-	-	ATT	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MAP2K4	NM_003010	exon6	c.672_673insATT	p.K224delinsKI	.	.	47	14	103	0	.	3134
MAP2K4P1	139201	bcgsc.ca	37	X	72745777	72745777	+	RNA	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	.	.	.	.	.	.	63	25	70	1	.	.
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60038954	60038954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MED13	NM_005121	exon22	c.C5251A	p.P1751T	.	.	81	31	87	0	.	136
METTL4	64863	ucsc.edu	37	18	2539040	2539040	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	METTL4	NM_022840	exon9	c.C1378T	p.Q460X	.	.	39	4	54	0	.	227
MKRN3	7681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	23812394	23812394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MKRN3	NM_005664	exon1	c.G1465T	p.E489X	.	.	124	40	121	0	.	1011
MRGPRX1	259249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18955438	18955438	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MRGPRX1	NM_147199	exon1	c.G894T	p.A298A	.	.	89	22	67	0	.	92
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	41042223	41042223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_173489	exon19	c.G1924T	p.A642S	.	.	80	32	87	0	.	.
MROH9	80133	hgsc.bcm.edu	37	1	170967421	170967421	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_025063	exon15	c.T1602C	p.S534S	.	.	83	4	79	0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9015640	9015640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	MUC16	NM_024690	exon29	c.A38183C	p.E12728A	.	.	172	58	201	0	.	566
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35692394	35692394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon15	c.G2112C	p.Q704H	.	.	56	13	112	0	.	144
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35734090	35734090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon22	c.T3782G	p.I1261S	.	.	62	22	38	0	.	144
NBEA	26960	hgsc.bcm.edu;ucsc.edu	37	13	35692392	35692392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NBEA	NM_015678	exon15	c.C2110T	p.Q704X	.	.	54	13	111	0	.	144
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20699518	20699518	+	Silent	SNP	C	C	A	rs146112225	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NELL1	NM_006157	exon2	c.C96A	p.I32I	.	.	231	79	178	0	C|1.000;T|0.000	155
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7064361	7064361	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP14	NM_176822	exon4	c.C1104G	p.V368V	.	.	102	15	77	0	.	295
NLRP3	114548	bcgsc.ca	37	1	247587408	247587408	+	Silent	SNP	C	C	T	rs7525979	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP3	NM_183395	exon3	c.C663T	p.T221T	.	.	272	9	279	3	C|0.878;T|0.122	674
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247588695	247588695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NLRP3	NM_183395	exon3	c.1950delC	p.F650fs	.	.	238	96	254	0	.	674
NT5DC3	51559	bcgsc.ca	37	12	104171742	104171742	+	Silent	SNP	C	C	T	rs17034524	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	NT5DC3	NM_001031701	exon14	c.G1512A	p.L504L	.	.	116	7	109	0	C|0.815;T|0.185	228
NYAP2	57624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226446820	226446820	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_020864	exon4	c.C687T	p.S229S	.	.	252	58	286	1	.	.
OR2L5	81466	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	248186037	248186037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001258284	exon1	c.C788T	p.S263F	.	.	191	67	144	0	.	.
OR4X1	390113	bcgsc.ca	37	11	48285856	48285856	+	Silent	SNP	C	C	T	rs10838850	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	OR4X1	NM_001004726	exon1	c.C444T	p.G148G	.	.	159	6	131	0	C|0.320;T|0.680	71
OR5W2	390148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55681596	55681596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	OR5W2	NM_001001960	exon1	c.G463A	p.D155N	.	.	83	35	77	0	.	70
OR6Y1	391112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158516972	158516972	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	OR6Y1	NM_001005189	exon1	c.G924A	p.K308K	.	.	162	59	121	1	.	69
PCNT	5116	broad.mit.edu	37	21	47809221	47809221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PCNT	NM_006031	exon19	c.C3715T	p.R1239C	.	.	355	10	268	1	.	141
PCSK5	5125	bcgsc.ca	37	9	78938186	78938186	+	Missense_Mutation	SNP	G	G	C	rs2803429	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PCSK5	NM_001190482	exon31	c.G4240C	p.E1414Q	.	.	92	9	64	0	G|0.675;C|0.325	93
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39876002	39876002	+	Silent	SNP	T	T	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001100399	exon20	c.A2184T	p.A728A	.	.	69	14	55	0	.	.
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77471864	77471864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_024776	exon5	c.A2405G	p.D802G	.	.	87	19	122	0	.	.
PER3	8863	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7887614	7887614	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PER3	NM_016831	exon17	c.A2601G	p.P867P	.	.	211	83	145	1	.	93
PIGS	94005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26888556	26888556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PIGS	NM_033198	exon6	c.T560A	p.V187D	.	.	130	49	144	0	.	289
PION	54103	broad.mit.edu	37	7	76942835	76942835	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PION	NM_017439	exon28	c.G2241T	p.L747L	.	.	16	3	42	0	.	514
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204197269	204197269	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PLEKHA6	NM_014935	exon21	c.G2973T	p.R991R	.	.	84	31	59	0	.	654
PLXNB3	5365	bcgsc.ca	37	X	153035798	153035798	+	Missense_Mutation	SNP	G	G	A	rs2266879	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PLXNB3	NM_001163257	exon10	c.G1861A	p.V621I	.	.	93	5	142	0	G|0.542;A|0.458	130
PRDM2	7799	broad.mit.edu	37	1	14075966	14075966	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PRDM2	NM_015866	exon6	c.C495A	p.S165S	.	.	32	5	29	0	.	116
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70986132	70986132	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	PTPRB	NM_001109754	exon7	c.A1710G	p.R570R	.	.	97	11	114	0	.	226
RAB39A	54734	hgsc.bcm.edu;mdanderson.org	37	11	107799388	107799388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_017516	exon1	c.C94T	p.R32C	.	.	19	8	15	0	.	.
RAP2C	57826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131348421	131348421	+	Silent	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RAP2C	NM_021183	exon3	c.C327G	p.V109V	.	.	71	33	104	0	.	848
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	79382797	79382799	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RASGRF1	NM_001145648	exon1	c.42_44del	p.14_15del	.	.	56	10	94	0	.	662
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183891363	183891363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RGL1	NM_015149	exon18	c.G2117A	p.S706N	.	.	131	17	140	0	.	725
RILP	83547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1549897	1549897	+	Missense_Mutation	SNP	G	G	A	rs200277401		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RILP	NM_031430	exon8	c.C1045T	p.R349W	.	.	56	17	37	0	G|0.999;A|0.000	91
RPGR	6103	broad.mit.edu	37	X	38145811	38145811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RPGR	NM_001034853	exon15	c.T2441G	p.V814G	.	.	94	9	81	9	.	131
RTEL1	51750	bcgsc.ca	37	20	62324289	62324289	+	Silent	SNP	C	C	T	rs3848672	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RTEL1	NM_032957	exon29	c.C2856T	p.F952F	.	.	121	6	114	1	C|0.849;T|0.151	44
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55252314	55252314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	RTN4	NM_020532	exon3	c.T2921C	p.V974A	.	.	68	17	66	0	.	155
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192701015	192701015	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SDPR	NM_004657	exon2	c.G912A	p.E304E	.	.	76	19	94	0	.	92
SESTD1	91404	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180036950	180036950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SESTD1	NM_178123	exon5	c.C266G	p.P89R	.	.	99	27	138	1	.	228
SLC25A5	292	hgsc.bcm.edu	37	X	118603984	118603984	+	Missense_Mutation	SNP	G	G	A	rs199678822		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	SLC25A5,NS,carcinoma,0	SLC25A5	NM_001152	exon2	c.G472A	p.G158S	.	.	62	4	62	2	.	131
SMARCC2	6601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56563945	56563945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SMARCC2	NM_139067	exon23	c.G2395A	p.E799K	.	.	57	5	74	0	.	229
SMIM6	100130933	broad.mit.edu;bcgsc.ca	37	17	73643554	73643554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001162997	exon2	c.C98T	p.T33I	.	.	119	7	127	1	.	.
SNRNP200	23020	bcgsc.ca	37	2	96944553	96944553	+	Silent	SNP	G	G	A	rs772175	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SNRNP200	NM_014014	exon37	c.C5317T	p.L1773L	.	.	185	7	223	2	G|0.733;A|0.267	162
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96957523	96957523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SNRNP200	NM_014014	exon17	c.C2276T	p.T759I	.	.	39	7	46	0	.	162
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	7726889	7726889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SORCS2	NM_020777	exon20	c.C2620T	p.Q874X	.	.	56	12	61	0	.	91
SPATA31D5P	347127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84531871	84531871	+	RNA	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	.	.	.	.	.	.	130	36	138	0	.	.
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	131	30	129	0	A|0.000;C|0.697;T|0.303	45
SUPT20HL1	100130302	bcgsc.ca	37	X	24382465	24382467	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001136234	exon1	c.1588_1590del	p.530_530del	.	.	56	0	88	0	.	.
SUPT20HL1	100130302	bcgsc.ca	37	X	24382483	24382483	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001136234	exon1	c.C1606G	p.P536A	.	.	45	6	62	0	.	.
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382443	24382443	+	Silent	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001136234	exon1	c.A1566T	p.L522L	.	.	67	10	112	0	.	.
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113312196	113312196	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SVEP1	NM_153366	exon2	c.G720A	p.E240E	.	.	189	38	207	0	.	75
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64554464	64554464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	SYNE2	NM_182914	exon58	c.A11560C	p.I3854L	.	.	110	34	107	0	.	164
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23854650	23854650	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAF4B	NM_005640	exon4	c.C621T	p.V207V	.	.	129	21	187	0	.	71
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118639243	118639243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAOK3	NM_016281	exon12	c.C845T	p.P282L	.	.	107	44	82	0	.	933
TAPT1	202018	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16165127	16165127	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TAPT1	NM_153365	exon14	c.T1508A	p.I503N	.	.	122	24	135	1	.	90
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101648734	101648734	+	Silent	SNP	C	C	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TBC1D8	NM_001102426	exon11	c.G1887C	p.V629V	.	.	114	24	159	0	.	25
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133906037	133906037	+	Missense_Mutation	SNP	A	A	T	rs61736740	alternate_allele	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TG	NM_003235	exon11	c.A2864T	p.E955V	.	.	247	109	236	1	A|0.987;C|0.013	145
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90035516	90035516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TIGD2	NM_145715	exon1	c.A1391G	p.K464R	.	.	81	15	96	0	.	90
TMEM200A	114801	broad.mit.edu;bcgsc.ca	37	6	130761614	130761614	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TMEM200A	NM_001258277	exon3	c.47delG	p.R16fs	.	.	70	8	66	0	.	23
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578275	7578275	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	TP53,NS,carcinoma,0	TP53	NM_000546	exon6	c.C574T	p.Q192X	.	.	113	47	167	0	.	70225
TPO	7173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	1437304	1437304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TPO	NM_175719	exon4	c.G274A	p.E92K	.	.	156	8	210	0	.	332
TRAK2	66008	bcgsc.ca	37	2	202252478	202252478	+	Silent	SNP	A	A	G	rs35620793	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TRAK2	NM_015049	exon13	c.T1644C	p.S548S	.	.	155	6	190	0	A|0.959;G|0.041	90
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155148663	155148663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TRIM46	NM_025058	exon3	c.G625T	p.A209S	.	.	50	25	44	0	.	228
TRIM48	79097	bcgsc.ca	37	11	55032582	55032582	+	Missense_Mutation	SNP	T	T	C	rs61894887	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TRIM48	NM_024114	exon2	c.T251C	p.I84T	.	.	607	17	597	4	T|0.961;C|0.039	130
TXN2	25828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36876748	36876748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	TXN2	NM_012473	exon2	c.C137T	p.P46L	.	.	66	15	113	0	.	90
UCK1	83549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134405967	134405967	+	Silent	SNP	C	C	T	rs200720505		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	UCK1	NM_001261451	exon2	c.G189A	p.K63K	.	.	234	54	218	0	C|0.999;T|0.000	90
UNC79	57578	bcgsc.ca	37	14	94088587	94088587	+	Missense_Mutation	SNP	G	G	A	rs4905081	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_020818	exon30	c.G4477A	p.V1493I	.	.	197	8	204	2	G|0.622;A|0.378	.
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	157146119	157146120	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	VEPH1	NM_001167911	exon5	c.688_689insA	p.Q230fs	.	.	132	40	122	0	.	155
XYLT2	64132	bcgsc.ca	37	17	48432324	48432324	+	Missense_Mutation	SNP	G	G	C	rs12451299	byfrequency	TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	XYLT2	NM_022167	exon4	c.G914C	p.R305T	.	.	95	6	93	0	G|0.835;C|0.165	91
ZFP36L1	677	bcgsc.ca	37	14	69259685	69259685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZFP36L1	NM_001244701	exon2	c.C178T	p.P60S	.	.	30	7	46	0	.	91
ZNF714	148206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21299717	21299717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZNF714	NM_182515	exon5	c.T247G	p.L83V	.	.	177	51	171	0	.	67
ZNF718	255403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	59340	59340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	NM_001039127	exon2	c.G21T	p.R7S	.	.	308	18	328	0	.	.
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102792471	102792471	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZNF839	NM_018335	exon2	c.C438T	p.A146A	.	.	67	14	98	0	.	91
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187693382	187693382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	ZSWIM2	NM_182521	exon9	c.A1231G	p.R411G	.	.	52	16	57	0	.	93
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21487891	21487892	+	Missense_Mutation	DNP	GA	GA	TG	novel		TCGA-BW-A5NQ-01A-11D-A27I-10	TCGA-BW-A5NQ-10A-01D-A27I-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e30c64d5-e796-4cfc-8dc8-6e62bf97822f	62616abe-8ebe-46fc-b24e-32d8cca79e40	.	.	.	.	.	p.S208H	.	.	.	.	.	.	.	
