Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	bcgsc.ca	37	7	48311857	48311857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ABCA13	NM_152701	exon17	c.A2594G	p.E865G	.	.	116	5	138	0	.	521
ABCB7	22	broad.mit.edu	37	X	74288942	74288942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ABCB7	NM_004299	exon12	c.G1562T	p.R521L	.	.	93	5	155	1	.	131
ACACA	31	bcgsc.ca	37	17	35687190	35687190	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ACACA	NM_198834	exon3	c.A261G	p.S87S	.	.	86	6	213	1	.	154
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35538246	35538246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ACACA	NM_198834	exon40	c.A4828G	p.I1610V	.	.	224	112	345	0	.	154
ACAD9	28976	hgsc.bcm.edu	37	3	128628948	128628949	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ACAD9	NM_014049	exon16	c.1648_1649insC	p.A550fs	.	.	159	12	95	0	.	92
ACIN1	22985	bcgsc.ca	37	14	23551034	23551034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ACIN1	NM_001164814	exon5	c.T622C	p.S208P	.	.	200	6	166	3	.	156
ADAM18	8749	bcgsc.ca	37	8	39496046	39496046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ADAM18	NM_014237	exon10	c.A890G	p.Y297C	.	.	163	6	1438	0	.	228
ADAM29	11086	bcgsc.ca	37	4	175897059	175897059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ADAM29	NM_001130703	exon4	c.A383G	p.Q128R	.	.	77	5	144	0	.	729
ADAMTS2	9509	bcgsc.ca	37	5	178700060	178700060	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ADAMTS2	NM_021599	exon3	c.T540C	p.G180G	.	.	85	5	43	0	.	228
ADCY3	109	bcgsc.ca	37	2	25050416	25050416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ADCY3	NM_004036	exon14	c.A2494G	p.R832G	.	.	78	5	48	0	.	94
ADCY9	115	bcgsc.ca	37	16	4057486	4057486	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ADCY9	NM_001116	exon3	c.T1767C	p.S589S	.	.	70	4	51	0	.	139
AGBL3	340351	bcgsc.ca	37	7	134718941	134718941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_178563	exon7	c.T599C	p.F200S	.	.	144	6	168	0	.	.
AHCTF1	25909	broad.mit.edu	37	1	247006055	247006055	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AHCTF1	NM_015446	exon35	c.A6576G	p.E2192E	.	.	228	8	230	1	.	97
AHI1	54806	bcgsc.ca	37	6	135784263	135784263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AHI1	NM_001134832	exon7	c.G931T	p.V311F	.	.	90	5	129	1	.	227
AHNAK	79026	bcgsc.ca	37	11	62288535	62288535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AHNAK	NM_001620	exon5	c.A13354G	p.M4452V	.	.	194	8	244	0	.	109
AJAP1	55966	mdanderson.org	37	1	4772324	4772324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AJAP1	NM_018836	exon2	c.T394C	p.S132P	.	.	28	11	10	1	.	515
AK7	122481	bcgsc.ca	37	14	96912913	96912913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AK7	NM_152327	exon8	c.A839G	p.E280G	.	.	144	5	178	2	.	228
AKAP6	9472	ucsc.edu;bcgsc.ca	37	14	33014861	33014861	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AKAP6	NM_004274	exon4	c.A1002G	p.T334T	.	.	46	4	87	0	.	733
AKT2	208	bcgsc.ca	37	19	40761066	40761066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AKT2	NM_001626	exon4	c.A286G	p.R96G	.	.	154	6	88	1	.	978
ALDH1A2	8854	bcgsc.ca	37	15	58302922	58302922	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALDH1A2	NM_003888	exon4	c.T418C	p.L140L	.	.	73	4	120	1	.	226
ALDH3A1	218	bcgsc.ca	37	17	19643714	19643714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALDH3A1	NM_001135168	exon6	c.T884C	p.M295T	.	.	79	4	57	0	.	228
ALG1L2	644974	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129811029	129811029	+	Silent	SNP	C	C	A	rs191831656	by1000genomes;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001136152	exon3	c.C217A	p.R73R	.	.	314	103	143	1	C|0.997;T|0.003	.
ALG9	79796	bcgsc.ca	37	11	111711531	111711531	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALG9	NM_001077690	exon11	c.T1020C	p.V340V	.	.	103	5	83	0	.	91
ALOX15B	247	bcgsc.ca	37	17	7948922	7948922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALOX15B	NM_001141	exon8	c.A1118G	p.H373R	.	.	120	5	101	0	.	227
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu	37	17	7950032	7950032	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ALOX15B	NM_001141	exon9	c.1247delC	p.A416fs	.	.	65	11	55	0	.	227
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115220086	115220086	+	Missense_Mutation	SNP	C	C	A	rs121912682	bycluster;by1000genomes;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AMPD1	NM_000036	exon10	c.G1373T	p.R458L	.	.	143	21	96	0	G|0.999;A|0.001	293
AMZ2P1	201283	bcgsc.ca	37	17	62969570	62969570	+	RNA	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	73	4	64	0	.	.
APOB	338	ucsc.edu;bcgsc.ca	37	2	21255391	21255391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	APOB	NM_000384	exon10	c.A1187G	p.Q396R	.	.	51	5	50	0	.	175
AR	367	bcgsc.ca	37	X	66941779	66941779	+	Missense_Mutation	SNP	T	T	C	rs137852592		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	AR	NM_000044	exon6	c.T2423C	p.M808T	.	.	51	4	158	1	.	661
ARAP2	116984	bcgsc.ca	37	4	36122939	36122939	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARAP2	NM_015230	exon23	c.A3756G	p.K1252K	.	.	55	4	186	2	.	93
ARHGAP32	9743	broad.mit.edu;bcgsc.ca	37	11	128846483	128846483	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARHGAP32	NM_001142685	exon19	c.T2127C	p.S709S	.	.	326	11	348	1	.	231
ARHGAP5	394	bcgsc.ca	37	14	32561296	32561296	+	Missense_Mutation	SNP	T	T	C	rs200111638		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	ARHGAP5,NS,carcinoma,+1	ARHGAP5	NM_001173	exon2	c.T1421C	p.V474A	.	.	118	11	151	0	T|0.999;C|0.001	94
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27087894	27087898	+	Frame_Shift_Del	DEL	GCCAC	GCCAC	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	GCCAC	GCCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARID1A	NM_006015	exon6	c.2181_2185del	p.727_729del	.	.	202	70	325	0	.	584
ARMC4	55130	bcgsc.ca	37	10	28196614	28196614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARMC4	NM_018076	exon17	c.G2588A	p.C863Y	.	.	53	5	92	0	.	96
ARTN	9048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	44402421	44402421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ARTN	NM_001136215	exon4	c.G671T	p.C224F	.	.	59	28	21	0	.	90
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	131164981	131164981	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASAP1	NM_001247996	exon15	c.1059+1G>A	.	.	.	364	61	175	0	.	95
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123270025	123270025	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASB15	NM_080928	exon9	c.T1446C	p.C482C	.	.	133	52	143	0	.	228
ASB2	51676	broad.mit.edu;bcgsc.ca	37	14	94405769	94405769	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASB2	NM_001202429	exon8	c.C1302T	p.G434G	.	.	60	8	33	1	.	228
ASPSCR1	79058	hgsc.bcm.edu	37	17	79954362	79954363	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASPSCR1	NM_024083	exon7	c.573_574insG	p.A191fs	.	.	79	10	43	0	.	877
ASUN	55726	bcgsc.ca	37	12	27067505	27067505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_018164	exon12	c.G1255T	p.G419C	.	.	97	4	142	0	.	.
ASXL3	80816	bcgsc.ca	37	18	31263467	31263467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ASXL3	NM_030632	exon8	c.T814C	p.F272L	.	.	61	5	74	0	.	49
ATF7IP2	80063	bcgsc.ca	37	16	10525137	10525137	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATF7IP2	NM_024997	exon3	c.T660C	p.C220C	.	.	132	5	260	1	.	186
ATP11B	23200	bcgsc.ca	37	3	182635839	182635839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP11B	NM_014616	exon30	c.A3481G	p.T1161A	.	.	162	7	236	0	.	93
ATP11C	286410	bcgsc.ca	37	X	138850441	138850441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP11C	NM_001010986	exon20	c.T2378C	p.M793T	.	.	67	4	149	1	.	198
ATP2B2	491	bcgsc.ca	37	3	10392182	10392182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP2B2	NM_001001331	exon15	c.G2216C	p.R739P	.	.	141	16	82	8	.	95
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57038650	57038650	+	Missense_Mutation	SNP	T	T	C	rs11542649	bycluster	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP5B	NM_001686	exon3	c.A400G	p.I134V	.	.	562	161	381	0	T|1.000;|0.000	91
ATP6V0D2	245972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87162487	87162487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATP6V0D2	NM_152565	exon6	c.C786A	p.D262E	.	.	102	86	107	2	.	90
ATXN7L1	222255	bcgsc.ca	37	7	105264538	105264538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ATXN7L1	NM_020725	exon8	c.A1379G	p.H460R	.	.	147	7	109	2	.	90
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32207068	32207068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BAI2	NM_001703	exon11	c.G1700T	p.R567L	.	.	132	70	61	0	.	526
BCOR	54880	bcgsc.ca	37	X	39911480	39911480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BCOR	NM_001123385	exon15	c.A5150G	p.N1717S	.	.	156	6	164	1	.	229
BFAR	51283	bcgsc.ca	37	16	14761532	14761532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BFAR	NM_016561	exon8	c.T1201C	p.S401P	.	.	173	6	322	0	.	92
BPTF	2186	bcgsc.ca	37	17	65908639	65908639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BPTF	NM_004459	exon13	c.T5017C	p.S1673P	.	.	73	4	131	0	.	94
BRF2	55290	bcgsc.ca	37	8	37704490	37704490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BRF2	NM_018310	exon3	c.A418G	p.T140A	.	.	127	5	143	0	.	90
BRPF3	27154	bcgsc.ca	37	6	36196789	36196789	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BRPF3	NM_015695	exon12	c.A3390G	p.G1130G	.	.	109	12	63	2	.	92
BTBD10	84280	broad.mit.edu;bcgsc.ca	37	11	13443366	13443366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	BTBD10	NM_032320	exon3	c.A121G	p.K41E	.	.	120	5	132	0	.	90
BTN2A3P	54718	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	rs141013110		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	201	7	115	0	C|1.000;T|0.000	.
C10orf118	55088	bcgsc.ca	37	10	115885769	115885769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C10orf118	NM_018017	exon15	c.T2489C	p.I830T	.	.	137	5	236	2	.	92
C12orf5	57103	broad.mit.edu	37	12	4461601	4461601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C12orf5	NM_020375	exon6	c.T557C	p.I186T	.	.	239	7	244	0	.	226
C16orf62	57020	bcgsc.ca	37	16	19627462	19627462	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C16orf62	NM_020314	exon13	c.C1317T	p.L439L	.	.	114	5	169	0	.	69
C1QTNF4	114900	hgsc.bcm.edu;mdanderson.org	37	11	47611682	47611682	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C1QTNF4	NM_031909	exon2	c.C681T	p.G227G	.	.	42	13	14	0	.	90
C2orf16	84226	bcgsc.ca	37	2	27802052	27802052	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C2orf16	NM_032266	exon1	c.A2613G	p.Q871Q	.	.	133	5	108	1	.	67
C4orf40	401137	bcgsc.ca;mdanderson.org	37	4	71024516	71024516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C4orf40	NM_214711	exon3	c.C547A	p.P183T	.	.	326	83	167	3	.	68
C5orf42	65250	bcgsc.ca	37	5	37224725	37224725	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C5orf42	NM_023073	exon13	c.T2409C	p.S803S	.	.	306	9	415	1	.	94
C6	729	ucsc.edu;bcgsc.ca	37	5	41158869	41158869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C6	NM_001115131	exon13	c.T1875G	p.N625K	.	.	40	4	135	1	.	95
C6orf120	387263	ucsc.edu	37	6	170102867	170102867	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C6orf120	NM_001029863	exon1	c.G312T	p.V104V	.	.	28	5	18	1	.	90
C7orf63	79846	bcgsc.ca	37	7	89939529	89939529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C7orf63	NM_001039706	exon23	c.C2803T	p.P935S	.	.	78	4	82	0	.	91
C8A	731	bcgsc.ca	37	1	57372353	57372353	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C8A	NM_000562	exon8	c.A1110G	p.R370R	.	.	145	6	193	1	.	92
C9	735	bcgsc.ca	37	5	39288823	39288823	+	Splice_Site	SNP	A	A	G	rs113055778	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C9	NM_001737	exon11	c.1645+2T>C	.	.	.	111	5	298	0	.	90
C9orf123	90871	bcgsc.ca	37	9	7798597	7798597	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	C9orf123	NM_033428	exon2	c.A315G	p.K105K	.	.	154	7	95	0	.	90
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	115085443	115085443	+	Silent	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CADM1	NM_014333	exon7	c.G879C	p.L293L	.	.	171	25	389	0	.	92
CADPS	8618	broad.mit.edu	37	3	62518698	62518698	+	Silent	SNP	G	G	A	rs142840753		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CADPS	NM_003716	exon13	c.C2139T	p.D713D	.	.	41	6	73	0	G|1.000;A|0.000	281
CALCOCO1	57658	broad.mit.edu	37	12	54109798	54109798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CALCOCO1	NM_020898	exon9	c.G1039T	p.G347W	.	.	46	4	35	0	.	91
CAMKK2	10645	bcgsc.ca	37	12	121687593	121687593	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CAMKK2	NM_153500	exon13	c.C1320A	p.I440I	.	.	98	5	62	0	.	450
CAP2	10486	bcgsc.ca	37	6	17541374	17541374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CAP2	NM_006366	exon9	c.A997G	p.R333G	.	.	97	6	77	0	.	91
CARD6	84674	ucsc.edu	37	5	40854168	40854168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CARD6	NM_032587	exon3	c.T2734C	p.S912P	.	.	46	4	61	1	.	230
CASZ1	54897	hgsc.bcm.edu	37	1	10713557	10713558	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CASZ1	NM_001079843	exon11	c.2557_2558insC	p.A853fs	.	.	186	11	82	0	.	113
CBLB	868	bcgsc.ca	37	3	105397305	105397305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CBLB	NM_170662	exon17	c.T2539C	p.S847P	.	.	60	4	68	0	.	849
CCDC103	388389	bcgsc.ca	37	17	42981829	42981829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC103	.	.	.	.	.	.	79	5	35	0	.	69
CCDC135	84229	bcgsc.ca	37	16	57738807	57738807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC135	NM_032269	exon6	c.A719G	p.K240R	.	.	61	4	63	0	.	90
CCDC136	64753	bcgsc.ca	37	7	128451942	128451942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC136	NM_022742	exon13	c.A2117G	p.Q706R	.	.	63	4	61	0	.	24
CCDC138	165055	bcgsc.ca	37	2	109408132	109408132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC138	NM_144978	exon4	c.C268A	p.L90I	.	.	227	6	221	1	.	90
CCDC149	91050	bcgsc.ca	37	4	24878294	24878294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC149	NM_173463	exon3	c.A89G	p.E30G	.	.	133	6	136	1	.	68
CCDC169	728591	bcgsc.ca	37	13	36857832	36857832	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001144981	exon3	c.A171G	p.E57E	.	.	94	5	173	1	.	.
CCDC170	80129	bcgsc.ca	37	6	151865805	151865805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_025059	exon4	c.C542T	p.P181L	.	.	69	4	132	0	.	.
CCDC176	80127	bcgsc.ca	37	14	74514641	74514641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_025057	exon7	c.A656G	p.N219S	.	.	155	5	182	0	.	.
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55582881	55582881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC88A	NM_018084	exon8	c.A634G	p.I212V	.	.	78	30	75	0	.	94
CCDC9	26093	bcgsc.ca	37	19	47774569	47774569	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC9	NM_015603	exon12	c.A1230G	p.E410E	.	.	52	4	44	0	.	90
CCDC94	55702	bcgsc.ca	37	19	4249263	4249263	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCDC94	NM_018074	exon2	c.C63T	p.P21P	.	.	48	4	50	0	.	90
CCNH	902	bcgsc.ca	37	5	86703919	86703919	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CCNH	NM_001239	exon4	c.T399C	p.P133P	.	.	158	6	109	0	.	441
CCSER2	54462	bcgsc.ca	37	10	86132223	86132223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_018999	exon2	c.C1415A	p.S472Y	.	.	48	4	92	0	.	.
CCT6P1	643253	broad.mit.edu;ucsc.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	72	9	78	1	.	.
CDH15	1013	ucsc.edu;bcgsc.ca	37	16	89253841	89253841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDH15	NM_004933	exon6	c.T668C	p.V223A	.	.	47	4	44	0	.	523
CDH16	1014	bcgsc.ca	37	16	66945195	66945195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDH16	NM_004062	exon14	c.A1814G	p.E605G	.	.	82	6	59	0	.	93
CDHR3	222256	bcgsc.ca	37	7	105624667	105624667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDHR3	NM_152750	exon4	c.A445G	p.N149D	.	.	74	4	102	0	.	23
CDK5RAP2	55755	ucsc.edu;bcgsc.ca	37	9	123202153	123202153	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDK5RAP2	NM_018249	exon24	c.G3246A	p.L1082L	.	.	36	4	121	0	.	229
CDK7	1022	broad.mit.edu	37	5	68531256	68531256	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CDK7	NM_001799	exon2	c.C102T	p.T34T	.	.	816	10	786	1	.	964
CELSR1	9620	bcgsc.ca	37	22	46780472	46780472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CELSR1	NM_014246	exon20	c.C6851T	p.P2284L	.	.	77	6	46	0	.	525
CELSR3	1951	hgsc.bcm.edu	37	3	48691751	48691752	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CELSR3	NM_001407	exon7	c.5123_5124insG	p.A1708fs	.	.	154	13	73	0	.	523
CEP112	201134	bcgsc.ca	37	17	64024508	64024508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CEP112	NM_001199165	exon15	c.G1519A	p.E507K	.	.	83	4	289	1	.	90
CEP135	9662	bcgsc.ca	37	4	56840951	56840951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CEP135	NM_025009	exon11	c.A1289G	p.E430G	.	.	189	7	250	0	.	94
CEP290	80184	bcgsc.ca	37	12	88476901	88476901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CEP290	NM_025114	exon37	c.T4919C	p.L1640P	.	.	206	6	384	2	.	96
CERCAM	51148	broad.mit.edu;mdanderson.org	37	9	131183275	131183275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CERCAM	NM_016174	exon1	c.G119T	p.R40L	.	.	14	10	12	0	.	69
CERK	64781	bcgsc.ca	37	22	47095251	47095251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CERK	NM_022766	exon8	c.A902G	p.E301G	.	.	276	14	137	2	.	251
CGNL1	84952	bcgsc.ca	37	15	57731348	57731348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CGNL1	NM_001252335	exon3	c.A1151G	p.K384R	.	.	184	6	117	0	.	100
CGNL1	84952	ucsc.edu	37	15	57754064	57754064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CGNL1	NM_001252335	exon9	c.A2377G	p.R793G	.	.	43	4	75	0	.	100
CHGB	1114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5904318	5904318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CHGB	NM_001819	exon4	c.C1528A	p.H510N	.	.	131	36	114	3	.	96
CHMP4A	29082	bcgsc.ca	37	14	24679949	24679949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CHMP4A	NM_014169	exon4	c.A514G	p.M172V	.	.	345	9	288	0	.	92
CHST15	51363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	125769678	125769678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CHST15	NM_001270764	exon8	c.G1673A	p.W558X	.	.	94	34	37	0	.	91
CIDEC	63924	bcgsc.ca	37	3	9908958	9908958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CIDEC	NM_001199623	exon6	c.T616C	p.F206L	.	.	125	5	76	0	.	90
CIITA	4261	hgsc.bcm.edu	37	16	11001148	11001149	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CIITA	NM_000246	exon11	c.1799_1800insC	p.D600fs	.	.	170	11	108	0	.	226
CIT	11113	bcgsc.ca	37	12	120166356	120166356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CIT	NM_001206999	exon28	c.A3542G	p.Q1181R	.	.	215	6	195	0	.	399
CLCA2	9635	bcgsc.ca	37	1	86900275	86900275	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CLCA2	NM_006536	exon6	c.A819G	p.R273R	.	.	83	4	168	1	.	155
CLCN5	1184	bcgsc.ca	37	X	49840481	49840481	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CLCN5	NM_001127898	exon7	c.T447C	p.A149A	.	.	146	5	142	1	.	132
CLEC2D	29121	bcgsc.ca	37	12	9845651	9845651	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CLEC2D	NM_001004419	exon5	c.T483C	p.G161G	.	.	81	5	189	0	.	90
CMYA5	202333	bcgsc.ca	37	5	79027744	79027744	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CMYA5	NM_153610	exon2	c.A3156G	p.T1052T	.	.	174	5	245	0	.	77
CMYA5	202333	bcgsc.ca	37	5	79028440	79028440	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CMYA5	NM_153610	exon2	c.T3852C	p.P1284P	.	.	112	5	177	0	.	77
CMYA5	202333	bcgsc.ca	37	5	79033147	79033147	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CMYA5	NM_153610	exon2	c.A8559G	p.T2853T	.	.	94	4	174	0	.	77
CMYA5	202333	bcgsc.ca	37	5	79034278	79034278	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CMYA5	NM_153610	exon2	c.T9690C	p.T3230T	.	.	54	4	97	0	.	77
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54646892	54646892	+	Silent	SNP	C	C	T	rs149889819		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CNOT3	NM_014516	exon3	c.C63T	p.G21G	.	.	70	19	43	0	C|0.999;T|0.000	93
CNTN4	152330	broad.mit.edu;bcgsc.ca	37	3	2944670	2944670	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CNTN4	NM_175607	exon12	c.C1188T	p.N396N	.	.	158	6	189	0	.	344
CNTNAP5	129684	bcgsc.ca	37	2	125504808	125504808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CNTNAP5	NM_130773	exon14	c.G2077A	p.G693R	.	.	72	5	108	0	.	524
COG4	25839	bcgsc.ca	37	16	70524253	70524253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COG4	NM_015386	exon13	c.A1690G	p.T564A	.	.	106	6	121	1	.	90
COG4	25839	bcgsc.ca	37	16	70546162	70546162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COG4	NM_015386	exon5	c.T718C	p.S240P	.	.	137	5	183	0	.	90
COL19A1	1310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70778319	70778319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL19A1	NM_001858	exon15	c.C1175T	p.S392F	.	.	123	37	214	3	.	156
COL22A1	169044	hgsc.bcm.edu	37	8	139895383	139895384	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL22A1	NM_152888	exon2	c.33_34insG	p.G11fs	.	.	106	14	25	0	.	103
COL28A1	340267	bcgsc.ca	37	7	7412770	7412770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL28A1	NM_001037763	exon32	c.A2767G	p.S923G	.	.	364	9	402	0	.	93
COL4A2	1284	bcgsc.ca	37	13	111132700	111132700	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL4A2	NM_001846	exon31	c.A2721G	p.K907K	.	.	119	5	50	0	.	95
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70993489	70993489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COL9A1	NM_001851	exon6	c.C731A	p.P244H	.	.	236	64	140	1	.	94
COMMD1	150684	bcgsc.ca	37	2	62132968	62132968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COMMD1	NM_152516	exon1	c.T155C	p.L52P	.	.	209	7	99	1	.	91
COPS4	51138	bcgsc.ca	37	4	83978428	83978428	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COPS4	NM_016129	exon6	c.T582C	p.V194V	.	.	172	6	340	0	.	226
COX11	1353	ucsc.edu	37	17	53045956	53045956	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	COX11	NM_001162861	exon1	c.C52G	p.R18G	.	.	48	6	42	6	.	91
CREBBP	1387	ucsc.edu;bcgsc.ca	37	16	3820965	3820965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CREBBP	NM_004380	exon14	c.T2486C	p.L829P	.	.	48	5	48	1	.	1807
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	113662479	113662479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CSMD3	NM_198123	exon19	c.G3104T	p.S1035I	.	.	567	50	287	0	.	1132
CSRNP1	64651	bcgsc.ca	37	3	39184899	39184899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CSRNP1	NM_033027	exon5	c.T1417C	p.S473P	.	.	151	6	75	1	.	230
CSRNP1	64651	bcgsc.ca	37	3	39188065	39188065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CSRNP1	NM_033027	exon2	c.T109C	p.S37P	.	.	83	4	37	0	.	230
CTCFL	140690	hgsc.bcm.edu	37	20	56098886	56098887	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CTCFL	NM_001269044	exon1	c.376_377insG	p.P126fs	.	.	139	11	83	0	.	292
CTNNA2	1496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80782831	80782831	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CTNNA2	NM_001164883	exon12	c.G1554C	p.L518F	.	.	26	12	57	0	.	368
CTR9	9646	bcgsc.ca	37	11	10776600	10776600	+	Silent	SNP	A	A	G	rs35582466	byfrequency	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CTR9	NM_014633	exon3	c.A240G	p.K80K	.	.	278	8	167	0	A|0.997;G|0.003	92
CTSL1	1514	bcgsc.ca	37	9	90343019	90343019	+	Silent	SNP	A	A	G	rs148207959	byfrequency;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CTSL1	NM_145918	exon3	c.A204G	p.E68E	.	.	150	6	130	0	A|1.000;C|0.000	93
CYP2U1	113612	bcgsc.ca	37	4	108871472	108871472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CYP2U1	NM_183075	exon5	c.A1528G	p.S510G	.	.	149	6	303	3	.	90
CYP39A1	51302	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607325	46607325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CYP39A1	NM_016593	exon3	c.C394T	p.L132F	.	.	350	64	396	2	.	91
CYP4F2	8529	bcgsc.ca	37	19	15996841	15996841	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	CYP4F2	NM_001082	exon9	c.T1008C	p.G336G	.	.	104	5	67	1	.	92
D2HGDH	728294	hgsc.bcm.edu	37	2	242683136	242683137	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_152783	exon5	c.590_591insC	p.S197fs	.	.	195	12	104	0	.	.
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176895871	176895871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DBN1	NM_080881	exon3	c.A122T	p.D41V	.	.	176	23	101	0	.	587
DCAF10	79269	bcgsc.ca	37	9	37861147	37861147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCAF10	NM_024345	exon7	c.T1322C	p.V441A	.	.	66	5	92	0	.	115
DCLRE1A	9937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115609989	115609989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCLRE1A	NM_014881	exon2	c.A875G	p.D292G	.	.	236	73	153	1	.	228
DCLRE1B	64858	bcgsc.ca	37	1	114454339	114454339	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCLRE1B	NM_022836	exon4	c.A1125G	p.K375K	.	.	85	6	74	1	.	227
DCLRE1B	64858	bcgsc.ca	37	1	114454740	114454740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCLRE1B	NM_022836	exon4	c.T1526C	p.V509A	.	.	77	4	76	0	.	227
DCP2	167227	bcgsc.ca	37	5	112328401	112328401	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DCP2	NM_152624	exon4	c.A366G	p.S122S	.	.	118	5	111	0	.	90
DDO	8528	bcgsc.ca	37	6	110714192	110714192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDO	NM_003649	exon5	c.T896C	p.I299T	.	.	133	6	77	0	.	155
DDR2	4921	bcgsc.ca	37	1	162743342	162743342	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDR2	NM_001014796	exon15	c.G1812A	p.L604L	.	.	123	5	142	0	.	1464
DDX58	23586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32457157	32457157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDX58	NM_014314	exon18	c.A2741G	p.E914G	.	.	113	39	234	2	.	230
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32457172	32457178	+	Frame_Shift_Del	DEL	TTCCACT	TTCCACT	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	TTCCACT	TTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DDX58	NM_014314	exon18	c.2720_2726del	p.907_909del	.	.	107	0	246	0	.	230
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31562239	31562239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DENND5B	NM_144973	exon14	c.G2761A	p.A921T	.	.	116	41	155	0	.	24
DFFB	1677	hgsc.bcm.edu	37	1	3786299	3786300	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DFFB	NM_004402	exon5	c.641_642insC	p.G214fs	.	.	197	13	100	0	.	91
DHX37	57647	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	125438447	125438447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DHX37	NM_032656	exon20	c.C2674T	p.R892W	.	.	76	8	20	0	.	227
DHX57	90957	bcgsc.ca	37	2	39046044	39046044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DHX57	NM_198963	exon19	c.A3446G	p.N1149S	.	.	161	6	208	0	.	228
DIAPH1	1729	bcgsc.ca	37	5	140953467	140953467	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DIAPH1	NM_005219	exon16	c.C1950T	p.T650T	.	.	63	4	34	0	.	91
DIO1	1733	bcgsc.ca	37	1	54375628	54375628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DIO1	NM_001039715	exon3	c.A562G	p.N188D	.	.	77	4	102	0	.	90
DLC1	10395	broad.mit.edu	37	8	12960363	12960363	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DLC1	NM_182643	exon9	c.1503-1G>A	.	.	.	224	4	244	3	.	657
DNAAF1	123872	bcgsc.ca	37	16	84199531	84199531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAAF1	NM_178452	exon7	c.A1006G	p.R336G	.	.	70	4	99	1	.	73
DNAH9	1770	bcgsc.ca	37	17	11666779	11666779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAH9	NM_001372	exon36	c.C7018T	p.P2340S	.	.	196	6	185	0	.	168
DNAH9	1770	broad.mit.edu;mdanderson.org	37	17	11738188	11738188	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAH9	NM_001372	exon49	c.G9480A	p.A3160A	.	.	38	8	57	0	.	168
DNAJC12	56521	bcgsc.ca	37	10	69583113	69583113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAJC12	NM_021800	exon2	c.T116C	p.L39P	.	.	278	7	310	2	.	658
DNAJC18	202052	bcgsc.ca	37	5	138761877	138761877	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DNAJC18	NM_152686	exon4	c.A543G	p.G181G	.	.	224	7	240	0	.	227
DOCK3	1795	bcgsc.ca	37	3	51265464	51265464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DOCK3	NM_004947	exon17	c.T1592C	p.M531T	.	.	274	7	230	0	.	22
DOCK6	57572	bcgsc.ca	37	19	11314943	11314943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DOCK6	NM_020812	exon40	c.G5153A	p.R1718H	.	.	98	5	86	0	.	93
DOCK8	81704	bcgsc.ca	37	9	325696	325696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DOCK8	NM_203447	exon8	c.T853C	p.F285L	.	.	57	4	105	0	.	517
DPYD	1806	bcgsc.ca	37	1	98058837	98058837	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DPYD	NM_000110	exon10	c.A1065G	p.G355G	.	.	61	4	82	0	.	278
DRG2	1819	bcgsc.ca	37	17	18003902	18003902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DRG2	NM_001388	exon7	c.T560C	p.I187T	.	.	118	5	61	0	.	91
DSC3	1825	bcgsc.ca	37	18	28587024	28587024	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DSC3	NM_024423	exon12	c.A1737G	p.Q579Q	.	.	118	5	164	1	.	94
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	46860102	46860102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DYM	NM_017653	exon7	c.C616T	p.P206S	.	.	80	12	80	0	.	226
DYNC1H1	1778	bcgsc.ca	37	14	102508624	102508624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	DYNC1H1	NM_001376	exon67	c.A12274G	p.R4092G	.	.	98	6	71	1	.	98
EBAG9	9166	broad.mit.edu	37	8	110576757	110576757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EBAG9	NM_004215	exon7	c.A611G	p.E204G	.	.	481	11	280	1	.	226
EBF4	57593	bcgsc.ca	37	20	2729251	2729251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001110514	exon8	c.A602G	p.N201S	.	.	107	5	70	0	.	.
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EBPL	NM_032565	exon4	c.C565G	p.L189V	.	.	254	6	276	3	.	90
EFCAB6	64800	bcgsc.ca	37	22	43933302	43933302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EFCAB6	NM_022785	exon29	c.A4003G	p.K1335E	.	.	189	6	109	0	.	97
EFTUD1P1	648809	bcgsc.ca	37	15	84770878	84770878	+	RNA	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	58	4	114	0	.	.
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38370498	38370498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EGFLAM	NM_001205301	exon6	c.G646T	p.V216L	.	.	34	15	62	1	.	187
EIF2AK3	9451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88874198	88874198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EIF2AK3	NM_004836	exon13	c.C2803T	p.H935Y	.	.	117	29	170	1	.	361
EIF2D	1939	bcgsc.ca	37	1	206775771	206775771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EIF2D	NM_006893	exon7	c.A821G	p.H274R	.	.	116	6	66	0	.	92
ENO4	387712	bcgsc.ca	37	10	118633597	118633597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ENO4	NM_001242699	exon10	c.A1226G	p.K409R	.	.	152	5	170	1	.	69
EPB41	2035	bcgsc.ca	37	1	29438922	29438922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EPB41	NM_001166005	exon19	c.A2458G	p.I820V	.	.	142	6	152	1	.	91
EPPK1	83481	broad.mit.edu	37	8	144940943	144940943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EPPK1	NM_031308	exon1	c.A6479G	p.E2160G	.	.	850	19	232	2	.	25
EPX	8288	bcgsc.ca	37	17	56280538	56280538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	EPX	NM_000502	exon11	c.T1805C	p.F602S	.	.	171	7	76	0	.	92
ERCC6L	54821	bcgsc.ca	37	X	71427173	71427173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ERCC6L	NM_017669	exon2	c.T1444C	p.F482L	.	.	85	5	145	0	.	93
ERMP1	79956	bcgsc.ca	37	9	5787239	5787239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ERMP1	NM_024896	exon15	c.A2620G	p.K874E	.	.	58	4	145	0	.	69
ESCO1	114799	bcgsc.ca	37	18	19147987	19147987	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ESCO1	NM_052911	exon5	c.T1599C	p.T533T	.	.	126	6	138	0	.	90
ESR2	2100	bcgsc.ca	37	14	64735557	64735557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ESR2	NM_001214902	exon3	c.C608T	p.A203V	.	.	75	4	74	0	.	611
FAM111B	374393	bcgsc.ca	37	11	58893313	58893313	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM111B	NM_198947	exon4	c.A1743G	p.E581E	.	.	169	6	184	0	.	92
FAM118B	79607	bcgsc.ca	37	11	126126707	126126707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM118B	NM_024556	exon7	c.C942A	p.F314L	.	.	91	5	112	0	.	90
FAM155A	728215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108518800	108518800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM155A	NM_001080396	exon1	c.A145C	p.T49P	.	.	129	29	54	1	.	23
FAM155A	728215	hgsc.bcm.edu	37	13	108518727	108518727	+	Missense_Mutation	SNP	T	T	C	rs80103752	byfrequency	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM155A	NM_001080396	exon1	c.A218G	p.Q73R	.	.	30	15	19	0	T|0.971;C|0.029	23
FAM161A	84140	bcgsc.ca	37	2	62065689	62065689	+	Missense_Mutation	SNP	T	T	C	rs200052745	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM161A	NM_001201543	exon4	c.A1735G	p.R579G	.	.	234	6	331	0	T|0.999;G|0.001	136
FAM183B	340286	ucsc.edu	37	7	38725189	38725189	+	RNA	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	179	71	124	0	.	.
FAM194A	131831	bcgsc.ca	37	3	150391776	150391776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM194A	NM_152394	exon11	c.T1310C	p.L437P	.	.	92	5	142	0	.	93
FAM198B	51313	bcgsc.ca	37	4	159091864	159091864	+	Silent	SNP	G	G	T	rs142241962	byfrequency;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM198B	NM_016613	exon2	c.C664A	p.R222R	.	.	73	4	70	0	G|0.999;A|0.001	90
FAM208A	23272	bcgsc.ca	37	3	56658610	56658610	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001112736	exon23	c.A4380G	p.E1460E	.	.	228	6	309	0	.	.
FAM222B	55731	bcgsc.ca	37	17	27093654	27093654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_018182	exon3	c.T32C	p.L11P	.	.	79	5	59	0	.	.
FAM227B	196951	bcgsc.ca	37	15	49868984	49868984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_152647	exon7	c.A500G	p.D167G	.	.	44	4	87	0	.	.
FAM228B	375190	broad.mit.edu	37	2	24360777	24360777	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001145710	exon4	c.169-2A>G	.	.	.	297	6	441	0	.	.
FAM83C	128876	broad.mit.edu	37	20	33875133	33875133	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FAM83C	NM_178468	exon4	c.G1449A	p.W483X	.	.	141	5	71	0	.	92
FARS2	10667	bcgsc.ca	37	6	5613535	5613535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FARS2	NM_006567	exon6	c.A1199G	p.D400G	.	.	95	4	93	1	.	90
FBN2	2201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127610344	127610344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBN2	NM_001999	exon60	c.C7626A	p.N2542K	.	.	64	14	111	2	.	146
FBN3	84467	ucsc.edu;bcgsc.ca	37	19	8175981	8175981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBN3	NM_032447	exon32	c.A4171G	p.M1391V	.	.	47	4	44	0	.	100
FBXW11	23291	bcgsc.ca	37	5	171337779	171337779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FBXW11	NM_012300	exon3	c.T170C	p.V57A	.	.	132	5	206	1	.	272
FER1L6	654463	bcgsc.ca	37	8	125076636	125076636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FER1L6	NM_001039112	exon26	c.C3377T	p.S1126F	.	.	243	7	89	0	.	100
FGD6	55785	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95603522	95603522	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FGD6	NM_018351	exon2	c.C1538G	p.A513G	.	.	217	69	214	1	.	137
FGFRL1	53834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	1015991	1015991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FGFRL1	NM_001004356	exon3	c.G80T	p.G27V	.	.	78	20	39	0	.	90
FKBP5	2289	bcgsc.ca	37	6	35565068	35565068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FKBP5	NM_001145775	exon7	c.A622G	p.K208E	.	.	211	7	231	0	.	227
FLJ16171	0	bcgsc.ca	37	5	174350538	174350538	+	RNA	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FLJ16171	.	.	.	.	.	.	66	4	48	0	.	67
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49710511	49710511	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FNDC3A	NM_001079673	exon6	c.A534G	p.R178R	.	.	133	59	241	1	.	278
FNIP1	96459	bcgsc.ca	37	5	131042214	131042214	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FNIP1	NM_133372	exon9	c.T804C	p.T268T	.	.	91	7	94	1	.	92
FOXG1	2290	bcgsc.ca	37	14	29237245	29237245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXG1	NM_005249	exon1	c.T760C	p.Y254H	.	.	93	7	61	0	.	660
FOXG1	2290	broad.mit.edu;mdanderson.org	37	14	29237565	29237565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXG1	NM_005249	exon1	c.C1080A	p.N360K	.	.	46	8	23	0	.	660
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535204	169535204	+	Missense_Mutation	SNP	C	C	A	rs35678180	byfrequency;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FOXI1	NM_012188	exon2	c.C726A	p.S242R	.	.	113	25	57	0	C|0.995;T|0.005	229
FRAS1	80144	bcgsc.ca	37	4	79430029	79430029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FRAS1	NM_025074	exon63	c.A9649G	p.S3217G	.	.	54	5	74	0	.	68
FRRS1	391059	bcgsc.ca	37	1	100206484	100206484	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	FRRS1	NM_001013660	exon6	c.T441C	p.V147V	.	.	89	4	108	0	.	91
GAB1	2549	broad.mit.edu;mdanderson.org	37	4	144336701	144336701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GAB1	NM_207123	exon2	c.C144A	p.Y48X	.	.	292	22	240	1	.	1146
GAB3	139716	ucsc.edu	37	X	153925435	153925435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GAB3	NM_001081573	exon7	c.T1399C	p.S467P	.	.	45	4	44	0	.	227
GABRR2	2570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89967516	89967516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GABRR2	NM_002043	exon9	c.G1271T	p.G424V	.	.	244	87	240	2	.	68
GALC	2581	bcgsc.ca	37	14	88414121	88414121	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GALC	NM_000153	exon13	c.T1440C	p.P480P	.	.	67	4	145	0	.	90
GBP5	115362	broad.mit.edu	37	1	89735054	89735054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GBP5	NM_052942	exon3	c.A185G	p.N62S	.	.	500	9	438	0	.	91
GCFC2	6936	bcgsc.ca	37	2	75907329	75907329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_003203	exon12	c.A1802G	p.K601R	.	.	207	8	181	2	.	.
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120580635	120580635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GCN1L1	NM_006836	exon43	c.C5606T	p.S1869F	.	.	199	63	140	0	.	94
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55263983	55263983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GFRAL	NM_207410	exon7	c.C958A	p.P320T	.	.	489	149	648	1	.	154
GFRAL	389400	ucsc.edu;bcgsc.ca	37	6	55263984	55263984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GFRAL	NM_207410	exon7	c.C959A	p.P320Q	.	.	490	147	658	6	.	154
GID4	79018	bcgsc.ca	37	17	17965200	17965200	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_024052	exon5	c.T750C	p.S250S	.	.	74	4	123	0	.	.
GIF	2694	bcgsc.ca	37	11	59612859	59612859	+	Missense_Mutation	SNP	T	T	C	rs35211634	byfrequency	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GIF	NM_005142	exon1	c.A68G	p.Q23R	.	.	54	4	70	0	T|0.902;C|0.098	92
GIMAP2	26157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150390064	150390064	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GIMAP2	NM_015660	exon3	c.G690T	p.V230V	.	.	134	29	153	1	.	91
GIN1	54826	bcgsc.ca	37	5	102423674	102423674	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GIN1	NM_017676	exon8	c.T1497C	p.D499D	.	.	145	5	191	0	.	92
GIPR	2696	hgsc.bcm.edu	37	19	46185002	46185002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GIPR	NM_000164	exon14	c.C1210A	p.R404S	.	.	22	11	3	0	.	523
GLIPR1	11010	bcgsc.ca	37	12	75884224	75884224	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GLIPR1	NM_006851	exon3	c.T459C	p.V153V	.	.	152	6	113	0	.	159
GLRA3	8001	bcgsc.ca	37	4	175649740	175649740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GLRA3	NM_001042543	exon4	c.T377C	p.I126T	.	.	76	4	111	0	.	93
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19740822	19740822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GMIP	NM_016573	exon21	c.G2863A	p.A955T	.	.	182	38	90	0	.	91
GNAI1	2770	broad.mit.edu;mdanderson.org	37	7	79764496	79764496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GNAI1	NM_002069	exon1	c.C20T	p.A7V	.	.	68	13	35	1	.	653
GPER	2852	bcgsc.ca	37	7	1131891	1131891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPER	NM_001505	exon2	c.T527C	p.L176P	.	.	80	6	49	0	.	69
GPR135	64582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59930780	59930780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR135	NM_022571	exon1	c.A1165G	p.I389V	.	.	73	11	40	0	.	90
GPR155	151556	bcgsc.ca	37	2	175337873	175337873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR155	NM_001267051	exon3	c.T680C	p.I227T	.	.	301	8	215	1	.	91
GPR176	11245	bcgsc.ca	37	15	40099409	40099409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR176	NM_007223	exon2	c.G223A	p.V75I	.	.	72	4	99	0	.	519
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89953983	89953983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPR98	NM_032119	exon21	c.C4640T	p.S1547F	.	.	223	30	214	0	.	103
GPRC5D	55507	bcgsc.ca	37	12	13102816	13102816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRC5D	NM_018654	exon1	c.T503C	p.V168A	.	.	107	6	150	0	.	90
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46999457	46999457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRIN2	NM_014696	exon3	c.C577G	p.Q193E	.	.	59	7	33	0	.	90
GPRIN2	9721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47000008	47000008	+	Silent	SNP	G	G	T	rs111800394	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPRIN2	NM_014696	exon3	c.G1128T	p.P376P	.	.	221	23	78	0	G|0.500;A|0.500	90
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7216697	7216697	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GPS2	NM_004489	exon9	c.724+2T>C	.	.	.	98	51	97	0	.	93
GUCY1A3	2982	bcgsc.ca	37	4	156643256	156643256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GUCY1A3	NM_001130687	exon9	c.T1783C	p.C595R	.	.	77	4	315	0	.	93
GUCY2D	3000	bcgsc.ca	37	17	7915771	7915771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	GUCY2D	NM_000180	exon10	c.A1960G	p.I654V	.	.	53	4	32	0	.	319
HADHA	3030	bcgsc.ca	37	2	26432750	26432750	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HADHA	NM_000182	exon11	c.A984G	p.G328G	.	.	74	4	140	1	.	91
HEATR5A	25938	bcgsc.ca	37	14	31841063	31841063	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HEATR5A	NM_015473	exon13	c.T1914C	p.T638T	.	.	66	4	114	2	.	23
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu	37	17	58156056	58156056	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HEATR6	NM_022070	exon2	c.219+1G>A	.	.	.	38	14	14	0	.	227
HECW1	23072	bcgsc.ca	37	7	43548606	43548606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HECW1	NM_015052	exon24	c.T3905C	p.L1302P	.	.	136	6	243	0	.	669
HECW2	57520	bcgsc.ca	37	2	197136014	197136014	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HECW2	NM_020760	exon18	c.3239-1G>C	.	.	.	164	7	252	0	.	668
HELZ2	85441	ucsc.edu	37	20	62196593	62196593	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001037335	exon9	c.G3582A	p.V1194V	.	.	48	4	18	0	.	.
HERC4	26091	bcgsc.ca	37	10	69695951	69695951	+	Silent	SNP	C	C	T	rs112538407	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HERC4	NM_022079	exon23	c.G2637A	p.L879L	.	.	274	8	341	1	C|0.500;A|0.500	659
HEXDC	284004	broad.mit.edu	37	17	80393620	80393620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HEXDC	NM_173620	exon6	c.A503G	p.N168S	.	.	75	5	48	0	.	92
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222705320	222705320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HHIPL2	NM_024746	exon6	c.G1711C	p.E571Q	.	.	62	25	91	0	.	69
HIF1A	3091	bcgsc.ca	37	14	62188245	62188245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HIF1A	NM_001243084	exon3	c.A317G	p.D106G	.	.	145	5	309	0	.	1149
HNF4G	3174	bcgsc.ca	37	8	76452270	76452270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HNF4G	NM_004133	exon1	c.A43G	p.T15A	.	.	132	6	124	0	.	187
HOMER2	9455	bcgsc.ca	37	15	83527782	83527782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HOMER2	NM_199330	exon5	c.A526G	p.S176G	.	.	222	7	184	1	.	67
HPGDS	27306	bcgsc.ca	37	4	95239064	95239064	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HPGDS	NM_014485	exon3	c.C186T	p.H62H	.	.	85	4	195	0	.	91
HSP90AB1	3326	bcgsc.ca	37	6	44219581	44219581	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HSP90AB1	NM_007355	exon9	c.T1422C	p.S474S	.	.	228	6	154	0	.	658
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70884513	70884513	+	Silent	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	HYDIN	NM_001270974	exon74	c.G12489C	p.V4163V	.	.	68	34	173	0	.	92
IBSP	3381	bcgsc.ca	37	4	88723880	88723880	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IBSP	NM_004967	exon4	c.T180C	p.V60V	.	.	130	6	570	3	.	90
IFI44	10561	bcgsc.ca	37	1	79116082	79116082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFI44	NM_006417	exon2	c.A202G	p.S68G	.	.	150	6	269	1	.	91
IFLTD1	160492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25801457	25801457	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFLTD1	NM_001145727	exon1	c.T29A	p.I10N	.	.	228	78	255	0	.	92
IFNGR1	3459	bcgsc.ca	37	6	137519415	137519415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFNGR1	NM_000416	exon7	c.C1223A	p.S408Y	.	.	85	4	124	0	.	91
IFT81	28981	bcgsc.ca	37	12	110572803	110572803	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFT81	NM_014055	exon6	c.A570G	p.E190E	.	.	281	7	232	0	.	91
IFT88	8100	bcgsc.ca	37	13	21165785	21165785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IFT88	NM_175605	exon8	c.T320C	p.V107A	.	.	66	4	126	0	.	91
IGSF3	3321	bcgsc.ca	37	1	117122291	117122291	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF3	NM_001542	exon11	c.G3117C	p.E1039D	.	.	107	5	103	1	.	92
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117122413	117122413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF3	NM_001542	exon11	c.C2995T	p.R999C	.	.	121	56	71	0	.	92
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133814256	133814256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IGSF9B	NM_014987	exon3	c.G268T	p.A90S	.	.	148	39	74	0	.	68
IL12RB2	3595	bcgsc.ca	37	1	67792416	67792416	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IL12RB2	NM_001559	exon4	c.365-2A>G	.	.	.	184	7	267	1	.	92
ILDR2	387597	bcgsc.ca	37	1	166926044	166926044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ILDR2	NM_199351	exon3	c.T425C	p.L142P	.	.	174	6	135	0	.	91
IMPDH1	3614	ucsc.edu;bcgsc.ca	37	7	128041169	128041169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	IMPDH1	NM_000883	exon6	c.A404G	p.D135G	.	.	70	6	46	0	.	230
INPP4B	8821	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	143043286	143043286	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	INPP4B	NM_003866	exon22	c.A2130G	p.G710G	.	.	76	19	178	2	.	228
INTS1	26173	bcgsc.ca	37	7	1514459	1514459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001080453	exon40	c.C5518A	p.H1840N	.	.	67	5	45	0	.	.
ITGA6	3655	bcgsc.ca	37	2	173352311	173352311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ITGA6	NM_000210	exon16	c.T2197C	p.S733P	.	.	173	6	308	0	.	227
ITGA8	8516	bcgsc.ca	37	10	15726074	15726074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ITGA8	NM_003638	exon4	c.A497G	p.D166G	.	.	101	6	158	1	.	230
ITGB1	3688	bcgsc.ca	37	10	33201054	33201054	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ITGB1	NM_133376	exon13	c.1470-2A>G	.	.	.	196	7	254	3	.	1084
ITGB2	3689	broad.mit.edu	37	21	46318992	46318992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ITGB2	NM_000211	exon8	c.A983G	p.K328R	.	.	158	5	73	0	.	717
ITK	3702	bcgsc.ca	37	5	156638362	156638362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ITK	NM_005546	exon3	c.T308C	p.V103A	.	.	84	7	129	1	.	1427
JAK3	3718	bcgsc.ca	37	19	17950338	17950338	+	Silent	SNP	G	G	A	rs201132330	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	JAK3	NM_000215	exon10	c.C1389T	p.H463H	.	.	77	4	38	1	.	2418
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15507624	15507624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	JARID2	NM_004973	exon11	c.T2708A	p.L903Q	.	.	155	47	71	0	.	228
JMJD1C	221037	bcgsc.ca	37	10	64954137	64954137	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	JMJD1C	NM_032776	exon15	c.5645-2A>G	.	.	.	90	4	138	1	.	275
KAT2B	8850	bcgsc.ca	37	3	20164226	20164226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KAT2B	NM_003884	exon9	c.A1343G	p.D448G	.	.	88	6	97	0	.	228
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119914945	119914945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCND2	NM_012281	exon1	c.C259A	p.R87S	.	.	144	65	82	0	.	517
KCNG4	93107	bcgsc.ca	37	16	84256450	84256450	+	Silent	SNP	C	C	A	rs112215858	byfrequency;alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCNG4	NM_172347	exon3	c.G933T	p.A311A	.	.	81	4	55	0	C|0.992;T|0.008	93
KCNJ13	3769	bcgsc.ca	37	2	233635886	233635886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCNJ13	NM_001172416	exon2	c.T187C	p.S63P	.	.	166	6	207	1	.	90
KCNJ14	3770	bcgsc.ca	37	19	48967873	48967873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCNJ14	NM_013348	exon3	c.T1150C	p.S384P	.	.	257	7	141	0	.	91
KCNN3	3782	broad.mit.edu	37	1	154841659	154841659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCNN3	NM_001204087	exon1	c.G782A	p.R261Q	.	.	1098	8	387	1	.	91
KCNT2	343450	bcgsc.ca	37	1	196311322	196311322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCNT2	NM_198503	exon15	c.G1440A	p.M480I	.	.	113	5	126	0	.	159
KCP	375616	bcgsc.ca	37	7	128542873	128542873	+	RNA	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KCP	.	.	.	.	.	.	83	6	46	2	.	68
KDM3A	55818	bcgsc.ca	37	2	86693543	86693543	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KDM3A	NM_001146688	exon10	c.A1056G	p.T352T	.	.	70	4	145	0	.	291
KDM4C	23081	bcgsc.ca	37	9	7165251	7165251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KDM4C	NM_001146694	exon20	c.T2795C	p.L932P	.	.	125	5	188	2	.	228
KDR	3791	bcgsc.ca	37	4	55972025	55972025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KDR	NM_002253	exon12	c.A1619G	p.E540G	.	.	94	4	163	1	.	2298
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26967658	26967658	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIAA0100	NM_014680	exon8	c.C810T	p.F270F	.	.	372	127	251	0	.	93
KIAA1328	57536	bcgsc.ca	37	18	34801978	34801978	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIAA1328	NM_020776	exon10	c.1524-2A>G	.	.	.	213	7	205	2	.	90
KIAA1804	0	bcgsc.ca	37	1	233515397	233515397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIAA1804	NM_032435	exon9	c.C2645A	p.S882Y	.	.	72	4	86	0	.	523
KIDINS220	57498	bcgsc.ca	37	2	8967188	8967188	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIDINS220	NM_020738	exon2	c.T36C	p.Y12Y	.	.	147	5	172	0	.	93
KIF14	9928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200522769	200522769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF14	NM_014875	exon30	c.A4694G	p.H1565R	.	.	316	36	352	2	.	140
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91477208	91477209	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF20B	NM_016195	exon10	c.1080_1081del	p.360_361del	.	.	317	50	613	0	.	93
KIF26B	55083	bcgsc.ca	37	1	245318730	245318730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF26B	NM_018012	exon1	c.A4G	p.N2D	.	.	126	5	51	0	.	25
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245772747	245772747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF26B	NM_018012	exon8	c.C1831G	p.L611V	.	.	132	23	55	0	.	25
KIF3A	11127	bcgsc.ca	37	5	132035956	132035956	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF3A	NM_007054	exon15	c.A1878G	p.G626G	.	.	157	6	152	0	.	91
KIF4A	24137	bcgsc.ca	37	X	69623712	69623712	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KIF4A	NM_012310	exon24	c.2620-2A>G	.	.	.	106	5	159	0	.	134
KLK3	354	bcgsc.ca	37	19	51361819	51361819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KLK3	NM_001030047	exon4	c.G598A	p.G200R	.	.	81	5	54	0	.	228
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	65	7	27	1	.	92
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	195	68	81	3	T|0.717;C|0.283	91
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	150	28	56	2	C|0.500;T|0.500	91
KTN1	3895	bcgsc.ca	37	14	56115555	56115555	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KTN1	NM_004986	exon21	c.A2334G	p.E778E	.	.	255	8	430	2	.	1147
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143718192	143718192	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	KYNU	NM_001199241	exon9	c.583-1G>A	.	.	.	49	12	74	0	.	92
LACTB	114294	bcgsc.ca	37	15	63419563	63419563	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LACTB	NM_171846	exon4	c.A627G	p.T209T	.	.	153	5	156	0	.	90
LAMA1	284217	bcgsc.ca	37	18	7017340	7017340	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LAMA1	NM_005559	exon20	c.T2745C	p.H915H	.	.	183	6	88	0	.	149
LAMA2	3908	bcgsc.ca	37	6	129824247	129824247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LAMA2	NM_000426	exon60	c.A8369G	p.E2790G	.	.	155	6	194	1	.	162
LAMB2	3913	bcgsc.ca	37	3	49159697	49159697	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LAMB2	NM_002292	exon28	c.A4680G	p.A1560A	.	.	222	8	116	2	.	93
LAMB4	22798	bcgsc.ca	37	7	107664609	107664609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LAMB4	NM_007356	exon34	c.A5161G	p.I1721V	.	.	159	5	280	1	.	140
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52258056	52258056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LEO1	NM_138792	exon2	c.C704G	p.P235R	.	.	563	96	545	0	.	68
LITAF	9516	bcgsc.ca	37	16	11650373	11650373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LITAF	NM_001136473	exon2	c.A214G	p.N72D	.	.	80	5	110	0	.	227
LMNB1	4001	bcgsc.ca	37	5	126154756	126154756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LMNB1	NM_005573	exon6	c.A1082G	p.E361G	.	.	153	5	211	0	.	226
LMO7	4008	bcgsc.ca	37	13	76415968	76415968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LMO7	NM_015842	exon21	c.A3181G	p.R1061G	.	.	105	7	142	2	.	586
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28143356	28143356	+	Silent	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LNX2	NM_153371	exon3	c.T465G	p.T155T	.	.	136	68	290	0	.	228
LOC100499484	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	100057188	100057188	+	RNA	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	109	59	134	1	.	.
LOC644936	0	ucsc.edu;bcgsc.ca	37	5	79595908	79595908	+	RNA	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	52	23	23	0	.	.
LPHN1	22859	bcgsc.ca	37	19	14273485	14273485	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LPHN1	NM_001008701	exon6	c.G1143A	p.L381L	.	.	194	6	116	0	.	523
LPHN3	23284	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	62849309	62849309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LPHN3	NM_015236	exon16	c.G3020T	p.G1007V	.	.	192	100	260	0	.	508
LRCH2	57631	bcgsc.ca	37	X	114384631	114384631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRCH2	NM_001243963	exon13	c.T1532C	p.V511A	.	.	289	7	551	3	.	131
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57571304	57571304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP1	NM_002332	exon26	c.G4291T	p.G1431C	.	.	180	57	73	1	.	596
LRP2	4036	bcgsc.ca	37	2	170092398	170092398	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP2	NM_004525	exon29	c.T4872C	p.F1624F	.	.	104	5	72	0	.	175
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12291266	12291266	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRP6	NM_002336	exon16	c.A3600G	p.Q1200Q	.	.	186	61	258	0	.	661
LRPPRC	10128	broad.mit.edu	37	2	44206974	44206974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRPPRC	NM_133259	exon3	c.C460G	p.Q154E	.	.	306	6	433	0	.	93
LRRC24	441381	ucsc.edu	37	8	145748753	145748753	+	Silent	SNP	A	A	C	rs2620651	byfrequency	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRRC24	NM_001024678	exon5	c.T648G	p.G216G	.	.	124	30	30	5	A|0.850;C|0.150	90
LRRC36	55282	bcgsc.ca	37	16	67401330	67401330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRRC36	NM_018296	exon8	c.A1165G	p.S389G	.	.	84	4	119	1	.	90
LRRC37B	114659	bcgsc.ca	37	17	30362594	30362594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRRC37B	NM_052888	exon7	c.A2059G	p.T687A	.	.	1252	704	1757	9	.	92
LRRC7	57554	bcgsc.ca	37	1	70541884	70541884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LRRC7	NM_020794	exon22	c.T4241C	p.I1414T	.	.	141	5	114	0	.	163
LTBP2	4053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74995708	74995708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LTBP2	NM_000428	exon11	c.G2105T	p.G702V	.	.	190	80	97	1	.	92
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	34266279	34266279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	LYZL6	NM_020426	exon1	c.G82A	p.A28T	.	.	59	28	84	0	.	90
MACF1	23499	bcgsc.ca	37	1	39906758	39906758	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MACF1	NM_012090	exon70	c.A12354G	p.G4118G	.	.	163	5	216	3	.	165
MAP2K1	5604	bcgsc.ca	37	15	66727390	66727390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MAP2K1	NM_002755	exon2	c.A106G	p.K36E	.	.	85	4	55	2	.	978
MAP3K7CL	56911	broad.mit.edu;bcgsc.ca	37	21	30532281	30532281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_020152	exon8	c.A452G	p.D151G	.	.	121	5	169	0	.	.
MAP4K2	5871	bcgsc.ca	37	11	64557386	64557386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MAP4K2	NM_004579	exon30	c.A2294G	p.Q765R	.	.	121	7	72	0	.	360
MAPK13	5603	bcgsc.ca	37	6	36098429	36098429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MAPK13	NM_002754	exon1	c.A70G	p.T24A	.	.	98	7	45	0	.	1521
MAX	4149	bcgsc.ca	37	14	65472973	65472973	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MAX	NM_197957	exon4	c.T201C	p.P67P	.	.	95	4	185	2	.	658
MBOAT4	619373	bcgsc.ca	37	8	29996111	29996111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MBOAT4	NM_001100916	exon2	c.A281G	p.Q94R	.	.	87	5	122	1	.	68
MCAT	27349	bcgsc.ca	37	22	43533103	43533103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MCAT	NM_173467	exon3	c.T713C	p.I238T	.	.	247	8	127	0	.	91
MED13	9969	bcgsc.ca	37	17	60060134	60060134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MED13	NM_005121	exon16	c.T3230C	p.L1077P	.	.	134	5	132	1	.	136
MEOX2	4223	broad.mit.edu;bcgsc.ca	37	7	15725858	15725858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MEOX2	NM_005924	exon1	c.A170G	p.E57G	.	.	153	9	64	0	.	515
METTL13	51603	broad.mit.edu	37	1	171752913	171752913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	METTL13	NM_015935	exon2	c.A187G	p.S63G	.	.	1419	16	537	1	.	91
MGAM	8972	bcgsc.ca	37	7	141752187	141752187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MGAM	NM_004668	exon25	c.T2899C	p.Y967H	.	.	64	4	109	1	.	70
MIA3	375056	bcgsc.ca	37	1	222803572	222803572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MIA3	NM_198551	exon4	c.C3010A	p.L1004M	.	.	185	6	159	1	.	98
MLL	4297	bcgsc.ca	37	11	118352544	118352544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MLL	NM_001197104	exon7	c.A3749G	p.E1250G	.	.	167	6	85	0	.	1255
MLL	4297	bcgsc.ca	37	11	118377083	118377083	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MLL	NM_001197104	exon27	c.T10476C	p.A3492A	.	.	100	6	90	1	.	1255
MLL4	8085	hgsc.bcm.edu	37	19	36214013	36214013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MLL4	NM_014727	exon6	c.C2839A	p.H947N	.	.	46	7	35	0	.	697
MON2	23041	broad.mit.edu	37	12	62979136	62979136	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MON2	NM_015026	exon33	c.C4762T	p.Q1588X	.	.	270	8	280	0	.	514
MRAP2	112609	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84772699	84772699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MRAP2	NM_138409	exon3	c.C215A	p.A72D	.	.	1094	408	909	11	.	92
MST1L	11223	ucsc.edu;bcgsc.ca	37	1	17085887	17085887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001271733	exon8	c.C934T	p.R312W	.	.	136	18	62	0	.	.
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55470647	55470647	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MTIF2	NM_002453	exon12	c.1469delC	p.S490X	.	.	618	80	793	0	.	91
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9084989	9084989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MUC16	NM_024690	exon1	c.A6826G	p.T2276A	.	.	48	4	136	0	.	566
MUC2	4583	mdanderson.org	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MUC2	NM_002457	exon30	c.G4729A	p.G1577S	.	.	197	18	88	3	.	90
MYH11	4629	bcgsc.ca	37	16	15831383	15831383	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MYH11	NM_001040114	exon26	c.T3237C	p.A1079A	.	.	56	6	76	0	.	666
MYO5B	4645	bcgsc.ca	37	18	47518699	47518699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MYO5B	NM_001080467	exon6	c.A715G	p.M239V	.	.	99	4	159	0	.	72
MYO7A	4647	bcgsc.ca	37	11	76886512	76886512	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	MYO7A	NM_001127179	exon18	c.2187+2T>C	.	.	.	93	4	44	0	.	138
NAP1L3	4675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	92927476	92927476	+	Silent	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NAP1L3	NM_004538	exon1	c.A828T	p.A276A	.	.	231	166	133	0	.	131
NAT10	55226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34137375	34137375	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NAT10	NM_024662	exon6	c.G501A	p.V167V	.	.	215	63	311	0	.	92
NBEAL1	65065	bcgsc.ca	37	2	204031015	204031015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NBEAL1	NM_001114132	exon36	c.A5771G	p.E1924G	.	.	162	6	385	3	.	92
NCAPH2	29781	bcgsc.ca	37	22	50961114	50961114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NCAPH2	NM_001185011	exon17	c.T1393C	p.S465P	.	.	106	6	39	0	.	92
NFKB2	4791	hgsc.bcm.edu	37	10	104157402	104157403	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NFKB2	NM_001261403	exon7	c.621_622insC	p.L207fs	.	.	216	14	134	0	.	522
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	173996955	173996955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NLGN1	NM_014932	exon6	c.1164delC	p.N388fs	.	.	133	38	233	0	.	231
NLK	51701	bcgsc.ca	37	17	26488263	26488263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NLK	NM_016231	exon4	c.T722C	p.V241A	.	.	155	6	202	0	.	1403
NLRP13	126204	bcgsc.ca	37	19	56443673	56443673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NLRP13	NM_176810	exon1	c.A5G	p.N2S	.	.	63	5	102	0	.	211
NOTCH1	4851	bcgsc.ca	37	9	139391852	139391852	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NOTCH1	NM_017617	exon34	c.G6339A	p.L2113L	.	.	113	6	40	0	.	5459
NOTCH2	4853	bcgsc.ca	37	1	120496213	120496213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NOTCH2	NM_001200001	exon14	c.A2318G	p.D773G	.	.	128	6	205	4	.	1441
NPBWR1	2831	bcgsc.ca	37	8	53853239	53853239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NPBWR1	NM_005285	exon1	c.G772A	p.A258T	.	.	126	6	44	0	.	155
NPHP1	4867	bcgsc.ca	37	2	110881634	110881634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NPHP1	NM_000272	exon20	c.A1936G	p.K646E	.	.	90	5	68	0	.	92
NPHP3	27031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132407637	132407637	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NPHP3	NM_153240	exon21	c.A2982G	p.V994V	.	.	376	66	337	1	.	91
NPM3	10360	bcgsc.ca	37	10	103542013	103542013	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NPM3	NM_006993	exon5	c.418+2T>C	.	.	.	147	6	72	0	.	90
NR3C2	4306	bcgsc.ca	37	4	149357676	149357676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NR3C2	NM_001166104	exon2	c.A337G	p.R113G	.	.	228	7	307	1	.	154
NT5DC3	51559	bcgsc.ca	37	12	104181303	104181303	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NT5DC3	NM_001031701	exon11	c.T1104C	p.G368G	.	.	125	5	211	0	.	228
NUCB1	4924	bcgsc.ca	37	19	49422502	49422502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NUCB1	NM_006184	exon10	c.A961G	p.T321A	.	.	57	5	40	0	.	90
NVL	4931	bcgsc.ca	37	1	224484293	224484293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	NVL	NM_002533	exon11	c.G1090A	p.D364N	.	.	93	4	255	0	.	92
OAZ2	4947	bcgsc.ca	37	15	64983784	64983784	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	54	4	53	0	.	.
OBSCN	84033	bcgsc.ca	37	1	228469673	228469673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OBSCN	NM_001271223	exon36	c.A9524G	p.E3175G	.	.	231	8	142	2	.	403
OGFOD1	55239	bcgsc.ca	37	16	56504698	56504698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OGFOD1	NM_018233	exon10	c.A1280G	p.K427R	.	.	120	5	222	2	.	69
OLFM1	10439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138011770	138011770	+	Missense_Mutation	SNP	G	G	A	rs1130517	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OLFM1	NM_014279	exon6	c.G1150A	p.A384T	.	.	55	32	35	0	.	70
OLFML2A	169611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127563918	127563918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OLFML2A	NM_182487	exon5	c.C895A	p.Q299K	.	.	116	59	96	2	.	68
OR10A3	26496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7960259	7960259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR10A3	NM_001003745	exon1	c.C809G	p.T270S	.	.	210	72	335	0	.	69
OR10J5	127385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159505721	159505721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR10J5	NM_001004469	exon1	c.C77A	p.T26N	.	.	152	31	118	0	.	71
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29395051	29395051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR11A1	NM_013937	exon1	c.G368A	p.R123H	.	.	94	34	77	0	.	23
OR1C1	26188	bcgsc.ca	37	1	247921089	247921089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR1C1	NM_012353	exon1	c.C620A	p.A207D	.	.	81	4	82	0	.	91
OR2D2	120776	bcgsc.ca	37	11	6912881	6912881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR2D2	NM_003700	exon1	c.A851G	p.N284S	.	.	109	5	138	1	.	501
OR4K14	122740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20483095	20483095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR4K14	NM_001004712	exon1	c.C258A	p.F86L	.	.	116	29	102	0	.	115
OR51B4	79339	bcgsc.ca	37	11	5322507	5322507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR51B4	NM_033179	exon1	c.G670A	p.G224S	.	.	95	5	74	2	.	70
OR5B3	441608	bcgsc.ca	37	11	58170368	58170368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR5B3	NM_001005469	exon1	c.T515C	p.V172A	.	.	111	5	127	0	.	68
OR5M3	219482	bcgsc.ca	37	11	56237609	56237609	+	Missense_Mutation	SNP	A	A	G	rs200070203		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR5M3	NM_001004742	exon1	c.T365C	p.M122T	.	.	92	5	162	0	.	70
OR6C65	403282	hgsc.bcm.edu;bcgsc.ca	37	12	55794609	55794610	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR6C65	NM_001005518	exon1	c.297_298insT	p.V99fs	.	.	140	45	122	0	.	68
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	55927260	55927260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OR8K5	NM_001004058	exon1	c.C534A	p.Y178X	.	.	107	28	141	0	.	72
ORC3	23595	bcgsc.ca	37	6	88367733	88367733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ORC3	NM_181837	exon16	c.T1691C	p.V564A	.	.	49	4	71	0	.	206
OSCP1	127700	bcgsc.ca	37	1	36886085	36886085	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OSCP1	NM_145047	exon8	c.A951G	p.E317E	.	.	182	6	241	2	.	4
OTOGL	283310	bcgsc.ca	37	12	80660383	80660383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_173591	exon20	c.T2350C	p.F784L	.	.	132	5	231	1	.	.
OTOGL	283310	bcgsc.ca	37	12	80714234	80714234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_173591	exon33	c.A3808G	p.R1270G	.	.	139	6	150	1	.	.
OTUD4	54726	bcgsc.ca	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OTUD4	NM_001102653	exon21	c.C2726T	p.T909I	.	.	272	14	508	8	.	565
OTUD4	54726	bcgsc.ca	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	.	.	162	11	303	8	.	565
OTUD7B	56957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149916120	149916120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	OTUD7B	NM_020205	exon12	c.G2168T	p.G723V	.	.	51	22	43	0	.	502
PAF1	54623	bcgsc.ca	37	19	39880739	39880739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PAF1	NM_019088	exon3	c.A140G	p.K47R	.	.	113	5	68	0	.	69
PAGE2	203569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	55117891	55117891	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PAGE2	NM_207339	exon4	c.319+1G>A	.	.	.	334	104	321	0	.	92
PAK1IP1	55003	broad.mit.edu;bcgsc.ca	37	6	10707737	10707737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PAK1IP1	NM_017906	exon8	c.A830G	p.K277R	.	.	301	8	279	1	.	68
PAK3	5063	bcgsc.ca	37	X	110406207	110406207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PAK3	NM_001128168	exon7	c.A641G	p.E214G	.	.	126	5	361	1	.	1043
PARP15	165631	bcgsc.ca	37	3	122332035	122332035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PARP15	NM_001113523	exon4	c.A691G	p.S231G	.	.	161	5	218	0	.	524
PARP2	10038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20820469	20820469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PARP2	NM_005484	exon7	c.A602G	p.Y201C	.	.	99	27	72	0	.	661
PASD1	139135	bcgsc.ca	37	X	150780166	150780166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PASD1	NM_173493	exon4	c.A148G	p.T50A	.	.	98	5	265	1	.	133
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134246024	134246024	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PCBD2	NM_032151	exon2	c.85-1G>C	.	.	.	125	23	103	0	.	90
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47850032	47850032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PCNT	NM_006031	exon36	c.C7799T	p.A2600V	.	.	315	55	166	0	.	141
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	33840383	33840383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDCD6IP	NM_013374	exon1	c.G163A	p.G55S	.	.	41	26	14	0	.	228
PDE3B	5140	bcgsc.ca	37	11	14889094	14889094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE3B	NM_000922	exon15	c.A2929G	p.M977V	.	.	143	5	221	1	.	90
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	58882174	58882174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE4D	NM_006203	exon1	c.A28G	p.R10G	.	.	166	78	221	0	.	226
PDE4D	5144	ucsc.edu;bcgsc.ca	37	5	58511778	58511778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE4D	NM_001104631	exon2	c.G472A	p.G158S	.	.	31	4	58	0	.	226
PDE6A	5145	bcgsc.ca	37	5	149276281	149276281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDE6A	NM_000440	exon11	c.A1466G	p.E489G	.	.	95	6	83	0	.	92
PDGFC	56034	bcgsc.ca	37	4	157771396	157771396	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDGFC	NM_016205	exon2	c.A291G	p.E97E	.	.	65	4	176	0	.	525
PDGFRB	5159	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149503839	149503839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDGFRB	NM_002609	exon14	c.A1997G	p.N666S	.	.	235	10	118	1	.	1499
PDZD8	118987	ucsc.edu;bcgsc.ca	37	10	119078452	119078452	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PDZD8	NM_173791	exon3	c.A1029G	p.A343A	.	.	45	4	123	0	.	90
PELP1	27043	broad.mit.edu;bcgsc.ca	37	17	4594688	4594688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PELP1	NM_014389	exon2	c.G299T	p.S100I	.	.	93	6	100	1	.	24
PER2	8864	bcgsc.ca;mdanderson.org	37	2	239167286	239167286	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PER2	NM_022817	exon16	c.1628-1G>A	.	.	.	121	43	86	1	.	154
PIGN	23556	bcgsc.ca	37	18	59780376	59780376	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGN	NM_176787	exon16	c.A1425G	p.K475K	.	.	76	4	202	0	.	227
PIGN	23556	bcgsc.ca	37	18	59780406	59780406	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGN	NM_176787	exon16	c.T1395C	p.S465S	.	.	78	4	191	0	.	227
PIGQ	9091	broad.mit.edu;ucsc.edu	37	16	628459	628459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGQ	NM_148920	exon5	c.C1023G	p.D341E	.	.	59	7	63	0	.	226
PIGS	94005	hgsc.bcm.edu	37	17	26898507	26898508	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGS	NM_033198	exon1	c.8_9insG	p.A3fs	.	.	215	18	90	0	.	289
PIGU	128869	bcgsc.ca	37	20	33162978	33162978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIGU	NM_080476	exon11	c.T1124C	p.L375P	.	.	123	5	138	0	.	226
PIP5K1A	8394	bcgsc.ca	37	1	151204790	151204790	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PIP5K1A	NM_001135638	exon6	c.T435C	p.V145V	.	.	157	5	131	0	.	242
PKHD1	5314	bcgsc.ca	37	6	51929836	51929836	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1	NM_170724	exon13	c.A893G	p.D298G	.	.	18	3	53	0	.	603
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51732778	51732778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1	NM_170724	exon48	c.T7616C	p.I2539T	.	.	126	39	155	0	.	603
PKHD1L1	93035	bcgsc.ca	37	8	110530569	110530569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon73	c.T11863C	p.S3955P	.	.	173	6	136	1	.	145
PKHD1L1	93035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	110457487	110457487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon38	c.A5389C	p.N1797H	.	.	453	28	217	1	.	145
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110460575	110460575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PKHD1L1	NM_177531	exon39	c.G5980C	p.V1994L	.	.	232	13	103	0	.	145
PLA2G4A	5321	broad.mit.edu	37	1	186925346	186925346	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLA2G4A	NM_024420	exon14	c.A1449G	p.E483E	.	.	444	6	315	1	.	721
PLEKHA5	54477	bcgsc.ca	37	12	19475317	19475317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLEKHA5	NM_001256470	exon19	c.A2291G	p.K764R	.	.	64	4	86	0	.	227
PLEKHB1	58473	ucsc.edu;mdanderson.org	37	11	73372585	73372585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLEKHB1	NM_021200	exon8	c.C670T	p.L224F	.	.	78	22	31	3	.	227
PLEKHG1	57480	bcgsc.ca	37	6	151130844	151130844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLEKHG1	NM_001029884	exon11	c.A1252G	p.N418D	.	.	77	5	90	1	.	92
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128806961	128806961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLK4	NM_014264	exon5	c.C436T	p.R146C	.	.	327	114	223	0	.	333
PLXNA3	55558	bcgsc.ca	37	X	153697025	153697025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLXNA3	NM_017514	exon24	c.A4240G	p.K1414E	.	.	70	8	37	0	.	132
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153031765	153031765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLXNB3	NM_001163257	exon3	c.C100A	p.P34T	.	.	185	111	161	3	.	130
PLXNC1	10154	bcgsc.ca	37	12	94642001	94642001	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PLXNC1	NM_005761	exon14	c.2593-2A>G	.	.	.	100	5	152	1	.	92
PMS1	5378	bcgsc.ca	37	2	190660529	190660529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PMS1	NM_001128143	exon3	c.A167G	p.D56G	.	.	113	5	121	0	.	1396
POLR1B	84172	hgsc.bcm.edu	37	2	113300082	113300083	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POLR1B	NM_019014	exon1	c.11_12insC	p.G4fs	.	.	149	10	64	0	.	91
POSTN	10631	bcgsc.ca	37	13	38154736	38154736	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POSTN	NM_006475	exon11	c.A1491G	p.K497K	.	.	257	7	453	0	.	516
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38158220	38158220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POSTN	NM_006475	exon9	c.G1129A	p.A377T	.	.	86	18	100	0	.	516
POU2F3	25833	bcgsc.ca	37	11	120173013	120173013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POU2F3	NM_001244682	exon6	c.T386C	p.L129P	.	.	185	8	217	1	.	92
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39504010	39504010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	POU6F2	NM_007252	exon11	c.G1801T	p.G601W	.	.	81	12	81	2	.	90
PPM1H	57460	ucsc.edu;bcgsc.ca	37	12	63087751	63087751	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PPM1H	NM_020700	exon7	c.T1102C	p.L368L	.	.	54	6	69	0	.	637
PPME1	51400	bcgsc.ca	37	11	73941299	73941299	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_016147	exon6	c.C408T	p.G136G	.	.	278	7	450	0	.	.
PPP1R12A	4659	bcgsc.ca	37	12	80239198	80239198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PPP1R12A	NM_002480	exon3	c.T371C	p.F124S	.	.	146	5	188	0	.	273
PPP2R3A	5523	bcgsc.ca	37	3	135721627	135721627	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PPP2R3A	NM_002718	exon2	c.A1287G	p.K429K	.	.	177	6	290	0	.	662
PPP3CC	5533	bcgsc.ca	37	8	22384909	22384909	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PPP3CC	NM_001243974	exon9	c.T948C	p.A316A	.	.	175	6	396	2	.	227
PREX2	80243	bcgsc.ca	37	8	69129896	69129896	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PREX2	NM_024870	exon38	c.A4650G	p.R1550R	.	.	55	4	52	0	.	390
PRICKLE2-AS3	100874243	bcgsc.ca	37	3	64184645	64184645	+	RNA	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	75	4	62	0	.	.
PRKCH	5583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	61997206	61997206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PRKCH	NM_006255	exon12	c.G1654T	p.A552S	.	.	163	26	155	0	.	1063
PRPF40B	25766	bcgsc.ca	37	12	50031277	50031277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PRPF40B	NM_001031698	exon17	c.A1585G	p.T529A	.	.	117	6	52	0	.	95
PRSS50	29122	hgsc.bcm.edu	37	3	46757122	46757123	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PRSS50	NM_013270	exon3	c.373_374insG	p.P125fs	.	.	246	29	97	0	.	90
PTBP1	5725	bcgsc.ca	37	19	807890	807890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTBP1	NM_002819	exon11	c.T1141C	p.F381L	.	.	367	8	294	2	.	227
PTCH1	5727	bcgsc.ca	37	9	98218637	98218637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTCH1	NM_000264	exon19	c.T3227C	p.I1076T	.	.	70	4	47	0	.	3532
PTCHD1	139411	bcgsc.ca	37	X	23411408	23411408	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTCHD1	NM_173495	exon3	c.T1773C	p.Y591Y	.	.	74	5	103	0	.	135
PTGIS	5740	ucsc.edu;bcgsc.ca	37	20	48140754	48140754	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTGIS	NM_000961	exon6	c.T696C	p.S232S	.	.	49	4	37	0	.	93
PTPN14	5784	bcgsc.ca	37	1	214537859	214537859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTPN14	NM_005401	exon18	c.A3431G	p.N1144S	.	.	65	4	49	0	.	290
PTPN22	26191	bcgsc.ca	37	1	114380427	114380427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTPN22	NM_015967	exon13	c.T1595C	p.V532A	.	.	114	5	147	0	.	227
PTPRM	5797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8088802	8088802	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTPRM	NM_001105244	exon11	c.C1809T	p.T603T	.	.	67	29	123	1	.	228
PTPRR	5801	bcgsc.ca	37	12	71032984	71032984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTPRR	NM_002849	exon14	c.T1954C	p.S652P	.	.	56	6	106	1	.	652
PTTG1IP	754	hgsc.bcm.edu	37	21	46281119	46281120	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTTG1IP	NM_004339	exon3	c.236_237insT	p.S79fs	.	.	182	17	99	0	.	91
PTX4	390667	bcgsc.ca	37	16	1536510	1536510	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PTX4	NM_001013658	exon3	c.T852C	p.G284G	.	.	101	8	60	0	.	90
PXDNL	137902	bcgsc.ca	37	8	52359567	52359567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	PXDNL	NM_144651	exon12	c.A1522G	p.K508E	.	.	220	6	159	1	.	70
RAD51AP1	10635	bcgsc.ca	37	12	4654957	4654957	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RAD51AP1	NM_001130862	exon4	c.A219G	p.E73E	.	.	144	6	155	0	.	227
RAD54L2	23132	bcgsc.ca	37	3	51672172	51672172	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RAD54L2	NM_015106	exon11	c.T1695C	p.T565T	.	.	140	6	205	1	.	93
RAPGEF6	51735	bcgsc.ca	37	5	130834222	130834222	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RAPGEF6	NM_001164387	exon12	c.T1333C	p.L445L	.	.	224	6	215	0	.	661
RASA3	22821	bcgsc.ca	37	13	114786895	114786895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RASA3	NM_007368	exon9	c.G770A	p.S257N	.	.	183	7	62	0	.	658
RBM10	8241	bcgsc.ca	37	X	47039381	47039381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RBM10	NM_001204468	exon10	c.A1199G	p.K400R	.	.	152	6	74	0	.	626
RBM34	23029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235318339	235318339	+	Missense_Mutation	SNP	C	C	A	rs200657743	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RBM34	NM_001161533	exon4	c.G454T	p.V152L	.	.	694	308	662	1	.	46
RELN	5649	bcgsc.ca	37	7	103137004	103137004	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RELN	NM_173054	exon56	c.T9162C	p.N3054N	.	.	155	18	154	11	.	574
REV3L	5980	bcgsc.ca	37	6	111636487	111636487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	REV3L	NM_002912	exon27	c.A8449G	p.K2817E	.	.	72	4	99	0	.	294
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111678241	111678241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	REV3L	NM_002912	exon18	c.A7160T	p.H2387L	.	.	182	52	260	0	.	294
RFWD2	64326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175956209	175956209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RFWD2	NM_022457	exon18	c.A2003G	p.Y668C	.	.	202	45	179	0	.	659
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95091309	95091309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RHOBTB3	NM_014899	exon6	c.A892G	p.I298V	.	.	167	28	271	0	.	228
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130927134	130927134	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	RIMBP2,brain,glioma,+1	RIMBP2	NM_015347	exon8	c.C712A	p.R238R	.	.	428	151	217	0	.	142
RNF170	81790	bcgsc.ca	37	8	42742948	42742948	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RNF170	NM_001160223	exon2	c.A60G	p.E20E	.	.	151	5	157	0	.	90
RNF19A	25897	bcgsc.ca	37	8	101281169	101281169	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RNF19A	NM_015435	exon6	c.A1035G	p.S345S	.	.	92	6	99	1	.	229
RNF19A	25897	bcgsc.ca	37	8	101282104	101282104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RNF19A	NM_015435	exon5	c.T1021C	p.Y341H	.	.	213	6	280	0	.	229
RPS6KA6	27330	bcgsc.ca	37	X	83359619	83359619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RPS6KA6	NM_014496	exon17	c.A1502G	p.K501R	.	.	121	5	206	0	.	615
RPS6KC1	26750	bcgsc.ca	37	1	213414183	213414183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RPS6KC1	NM_012424	exon11	c.G1364T	p.S455I	.	.	76	4	125	1	.	417
RSPH4A	345895	bcgsc.ca	37	6	116950777	116950777	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RSPH4A	NM_001010892	exon4	c.A1710G	p.E570E	.	.	68	4	87	1	.	90
RUFY4	285180	bcgsc.ca	37	2	218940083	218940083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RUFY4	NM_198483	exon9	c.A868G	p.N290D	.	.	93	4	86	0	.	46
RUNDC3B	154661	bcgsc.ca	37	7	87369188	87369188	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RUNDC3B	NM_138290	exon6	c.T591C	p.I197I	.	.	74	4	126	0	.	69
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137320977	137320977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RXRA	NM_002957	exon7	c.T934G	p.S312A	.	.	259	131	161	2	.	188
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137320981	137320981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RXRA	NM_002957	exon7	c.T938C	p.F313S	.	.	260	144	165	3	.	188
RYR1	6261	bcgsc.ca	37	19	39002764	39002764	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	RYR1	NM_001042723	exon62	c.G9225A	p.L3075L	.	.	167	6	83	0	.	100
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77844990	77844990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SAMD15	NM_001010860	exon1	c.C1229T	p.T410I	.	.	417	84	295	0	.	90
SAMD4A	23034	bcgsc.ca	37	14	55168847	55168847	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SAMD4A	NM_015589	exon2	c.T264C	p.P88P	.	.	86	5	155	0	.	90
SAMD9	54809	bcgsc.ca	37	7	92732338	92732338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SAMD9	NM_001193307	exon2	c.A3073G	p.S1025G	.	.	196	7	193	0	.	140
SCARB2	950	bcgsc.ca	37	4	77091052	77091052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SCARB2	NM_005506	exon8	c.G1081A	p.E361K	.	.	214	6	214	1	.	90
SCARB2	950	broad.mit.edu;bcgsc.ca	37	4	77116972	77116972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SCARB2	NM_001204255	exon2	c.A163G	p.K55E	.	.	138	5	98	0	.	90
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166211045	166211045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SCN2A	NM_001040143	exon16	c.A3263G	p.D1088G	.	.	305	95	309	0	.	142
SDK2	54549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71503642	71503642	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SDK2	NM_001144952	exon2	c.C159T	p.S53S	.	.	139	61	99	1	.	24
SEC24B	10427	bcgsc.ca	37	4	110446608	110446608	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SEC24B	NM_006323	exon16	c.T2739C	p.Y913Y	.	.	173	6	379	3	.	137
SEC24C	9632	bcgsc.ca	37	10	75526912	75526912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SEC24C	NM_004922	exon15	c.A1994G	p.N665S	.	.	202	6	132	0	.	92
SEC63	11231	bcgsc.ca	37	6	108224204	108224204	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SEC63	NM_007214	exon13	c.1055-2A>G	.	.	.	49	4	78	0	.	227
SEMA3F	6405	hgsc.bcm.edu	37	3	50222142	50222143	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SEMA3F	NM_004186	exon13	c.1351_1352insG	p.R451fs	.	.	120	21	40	0	.	279
SERGEF	26297	bcgsc.ca	37	11	17899775	17899775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SERGEF	NM_012139	exon10	c.A1028G	p.E343G	.	.	255	20	226	8	.	227
SESN3	143686	bcgsc.ca	37	11	94911901	94911901	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SESN3	NM_144665	exon7	c.A1029G	p.E343E	.	.	78	4	145	0	.	90
SETBP1	26040	bcgsc.ca	37	18	42531929	42531929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SETBP1	NM_015559	exon4	c.A2624G	p.N875S	.	.	54	4	50	0	.	155
SETBP1	26040	bcgsc.ca	37	18	42533217	42533217	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SETBP1	NM_015559	exon4	c.A3912G	p.E1304E	.	.	80	4	94	0	.	155
SETDB2	83852	bcgsc.ca	37	13	50050676	50050676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SETDB2	NM_031915	exon7	c.T406C	p.S136P	.	.	62	4	149	0	.	91
SEZ6L2	26470	bcgsc.ca	37	16	29899031	29899031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SEZ6L2	NM_001243332	exon7	c.G1147T	p.A383S	.	.	64	4	45	1	.	92
SFRP5	6425	hgsc.bcm.edu	37	10	99531159	99531160	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SFRP5	NM_003015	exon1	c.432_433insT	p.F144fs	.	.	130	8	39	0	.	658
SGK196	0	bcgsc.ca	37	8	42977253	42977253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_032237	exon5	c.T286C	p.F96L	.	.	56	4	107	0	.	.
SGSM1	129049	bcgsc.ca	37	22	25280075	25280075	+	Silent	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SGSM1	NM_133454	exon16	c.C1716A	p.V572V	.	.	69	4	43	0	.	27
SH2D4A	63898	bcgsc.ca	37	8	19190585	19190585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SH2D4A	NM_022071	exon3	c.A301G	p.R101G	.	.	93	5	71	1	.	90
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70507758	70507758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SHANK2	NM_133266	exon1	c.G115T	p.V39L	.	.	304	86	152	1	.	94
SHPRH	257218	bcgsc.ca	37	6	146256523	146256523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SHPRH	NM_173082	exon12	c.G2624T	p.W875L	.	.	81	4	116	1	.	92
SIRT1	23411	bcgsc.ca	37	10	69672453	69672453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SIRT1	NM_012238	exon8	c.T1580C	p.L527S	.	.	148	6	225	1	.	226
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	56920341	56920341	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC12A3	NM_001126108	exon16	c.1991delC	p.T664fs	.	.	74	38	46	0	.	155
SLC12A8	84561	bcgsc.ca	37	3	124829102	124829102	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC12A8	NM_024628	exon9	c.A990G	p.G330G	.	.	75	5	80	0	.	22
SLC17A8	246213	bcgsc.ca	37	12	100813734	100813734	+	Missense_Mutation	SNP	A	A	G	rs145220492		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC17A8	NM_139319	exon12	c.A1567G	p.I523V	.	.	60	4	88	0	A|1.000;G|0.000	93
SLC1A1	6505	bcgsc.ca	37	9	4572387	4572387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC1A1	NM_004170	exon7	c.T766C	p.C256R	.	.	145	5	317	0	.	514
SLC27A6	28965	bcgsc.ca	37	5	128359387	128359387	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC27A6	NM_001017372	exon6	c.T1239C	p.C413C	.	.	53	4	101	1	.	90
SLC34A2	10568	bcgsc.ca	37	4	25664436	25664436	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC34A2	NM_006424	exon3	c.T222C	p.T74T	.	.	161	6	88	1	.	95
SLC35G3	146861	broad.mit.edu	37	17	33521194	33521194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_152462	exon1	c.C133A	p.L45M	.	.	154	12	111	2	.	.
SLC38A2	54407	bcgsc.ca	37	12	46758196	46758196	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC38A2	NM_018976	exon10	c.T849C	p.P283P	.	.	84	5	81	0	.	226
SLC43A3	29015	bcgsc.ca	37	11	57182173	57182173	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC43A3	NM_017611	exon11	c.T975C	p.T325T	.	.	148	6	112	0	.	90
SLC46A2	57864	bcgsc.ca	37	9	115648758	115648758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC46A2	NM_033051	exon3	c.T1352C	p.L451P	.	.	90	5	102	0	.	90
SLC5A7	60482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108622601	108622601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC5A7	NM_021815	exon7	c.G838A	p.G280R	.	.	156	59	101	0	.	93
SLC8A3	6547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70634968	70634968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC8A3	NM_183002	exon2	c.G172T	p.V58F	.	.	47	13	66	5	.	225
SLC9A5	6553	bcgsc.ca	37	16	67289052	67289052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLC9A5	NM_004594	exon3	c.T619C	p.F207L	.	.	154	7	130	1	.	92
SLCO4C1	353189	bcgsc.ca	37	5	101583137	101583137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SLCO4C1	NM_180991	exon10	c.A1630G	p.N544D	.	.	72	5	124	0	.	93
SMC1A	8243	bcgsc.ca	37	X	53440279	53440279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SMC1A	NM_006306	exon4	c.A518G	p.K173R	.	.	188	7	147	0	.	232
SMCO2	0	bcgsc.ca	37	12	27647237	27647237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001145010	exon7	c.A605G	p.N202S	.	.	230	6	400	0	.	.
SNX10	29887	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	26412162	26412162	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SNX10	NM_001199835	exon7	c.T576A	p.C192X	.	.	377	114	321	1	.	226
SOGA2	23255	bcgsc.ca	37	18	8798119	8798119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_015210	exon10	c.A2266G	p.R756G	.	.	200	7	107	0	.	.
SOS2	6655	bcgsc.ca	37	14	50626481	50626481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SOS2	NM_006939	exon10	c.A1520G	p.E507G	.	.	124	5	278	1	.	849
SPECC1L	23384	bcgsc.ca	37	22	24808641	24808641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPECC1L	NM_001145468	exon15	c.A3230G	p.Q1077R	.	.	236	9	121	0	.	92
SPNS2	124976	bcgsc.ca	37	17	4435912	4435912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPNS2	NM_001124758	exon6	c.G868A	p.D290N	.	.	116	5	79	0	.	68
SPRR3	6707	bcgsc.ca	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	45	6	50	0	A|0.010;C|0.001;T|0.988	45
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	80911451	80911451	+	Silent	SNP	G	G	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPRY2	NM_005842	exon2	c.C390G	p.S130S	.	.	183	26	87	0	.	659
SPTA1	6708	bcgsc.ca	37	1	158596674	158596674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SPTA1	NM_003126	exon41	c.T5788C	p.F1930L	.	.	181	8	178	0	.	142
SREBF2	6721	bcgsc.ca	37	22	42266933	42266933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SREBF2	NM_004599	exon4	c.T761C	p.V254A	.	.	207	6	145	0	.	154
SRSF7	6432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	38976737	38976737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SRSF7	NM_001195446	exon3	c.A320G	p.Y107C	.	.	528	188	282	1	.	226
ST7-OT4	338069	broad.mit.edu	37	7	116599337	116599337	+	RNA	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	257	6	176	0	.	.
ST8SIA3	51046	bcgsc.ca	37	18	55020081	55020081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ST8SIA3	NM_015879	exon1	c.A4G	p.R2G	.	.	102	7	45	1	.	136
STAB2	55576	bcgsc.ca	37	12	104107439	104107439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	STAB2	NM_017564	exon42	c.T4430C	p.I1477T	.	.	144	5	141	1	.	104
STIL	6491	bcgsc.ca	37	1	47746198	47746198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	STIL	NM_003035	exon12	c.C1932A	p.H644Q	.	.	179	6	212	0	.	659
STXBP6	29091	bcgsc.ca	37	14	25443980	25443980	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	STXBP6	NM_014178	exon2	c.T45C	p.L15L	.	.	96	5	147	0	.	90
SUGP1	57794	bcgsc.ca	37	19	19391019	19391019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SUGP1	NM_172231	exon9	c.A1325G	p.K442R	.	.	130	6	75	0	.	91
SUN5	140732	bcgsc.ca	37	20	31585495	31585495	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SUN5	NM_080675	exon7	c.341-2A>G	.	.	.	73	4	55	0	.	91
SUN5	140732	bcgsc.ca	37	20	31589017	31589017	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SUN5	NM_080675	exon5	c.278+1G>A	.	.	.	63	4	37	0	.	91
SUPT20H	55578	bcgsc.ca	37	13	37599486	37599486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_017569	exon17	c.A1303G	p.S435G	.	.	73	4	194	0	.	.
SYK	6850	bcgsc.ca	37	9	93626917	93626917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SYK	NM_003177	exon5	c.T764C	p.L255P	.	.	195	6	198	0	.	1402
SYN3	8224	bcgsc.ca	37	22	33376634	33376634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SYN3	NM_001135774	exon3	c.A365G	p.E122G	.	.	121	6	113	2	.	92
SYNE2	23224	bcgsc.ca	37	14	64632014	64632014	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SYNE2	NM_182914	exon90	c.A16491G	p.S5497S	.	.	144	5	257	0	.	164
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64900941	64900941	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	SYVN1	NM_172230	exon2	c.A132G	p.A44A	.	.	82	28	44	0	.	91
TAF1	6872	bcgsc.ca	37	X	70626515	70626515	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TAF1	NM_004606	exon26	c.G4086A	p.L1362L	.	.	165	6	137	0	.	900
TARBP1	6894	bcgsc.ca	37	1	234565039	234565039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TARBP1	NM_005646	exon17	c.A2903G	p.E968G	.	.	86	4	122	3	.	93
TAS2R30	259293	bcgsc.ca	37	12	11286393	11286393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_001097643	exon1	c.G451A	p.E151K	.	.	217	7	298	2	.	.
TBC1D22B	55633	bcgsc.ca	37	6	37249988	37249988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TBC1D22B	NM_017772	exon4	c.A449G	p.H150R	.	.	133	5	112	0	.	90
TCHH	7062	bcgsc.ca	37	1	152082400	152082400	+	Missense_Mutation	SNP	G	G	C	rs201862078		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TCHH	NM_007113	exon3	c.C3293G	p.P1098R	.	.	565	71	210	15	.	72
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	179623394	179623394	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TDRD5	NM_001199085	exon14	c.T2219G	p.L740X	.	.	264	24	283	0	.	94
TEX15	56154	broad.mit.edu;bcgsc.ca	37	8	30695513	30695513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TEX15	NM_031271	exon3	c.A7138G	p.R2380G	.	.	290	9	711	0	.	97
TFCP2L1	29842	hgsc.bcm.edu	37	2	121989435	121989436	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TFCP2L1	NM_014553	exon13	c.1308_1309insGG	p.G436fs	.	.	142	0	53	0	.	93
TFPT	29844	bcgsc.ca	37	19	54610439	54610439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TFPT	NM_013342	exon6	c.A680G	p.E227G	.	.	154	7	80	0	.	658
TGFB1	7040	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	41850671	41850671	+	Silent	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TGFB1	NM_000660	exon3	c.G615T	p.R205R	.	.	71	19	57	0	.	522
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43571883	43571883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TGM7	NM_052955	exon10	c.G1618A	p.G540S	.	.	69	21	32	0	.	92
TLK2	11011	broad.mit.edu	37	17	60598172	60598172	+	Silent	SNP	C	C	T	rs199613968		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TLK2	NM_001112707	exon3	c.C120T	p.C40C	.	.	162	7	147	2	.	464
TLL2	7093	hgsc.bcm.edu	37	10	98145959	98145960	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TLL2	NM_012465	exon15	c.1866_1867insG	p.G622fs	.	.	95	10	40	0	.	93
TLR1	7096	hgsc.bcm.edu	37	4	38798989	38798990	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TLR1	NM_003263	exon4	c.1464_1465insG	p.S488fs	.	.	255	26	258	0	.	524
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52255499	52255499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TLR9	NM_017442	exon2	c.G2833A	p.G945S	.	.	54	15	20	0	.	587
TM4SF1	4071	bcgsc.ca	37	3	149089615	149089615	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TM4SF1	NM_014220	exon4	c.A453G	p.E151E	.	.	217	7	205	1	.	90
TMED10P1	286102	broad.mit.edu	37	8	146220912	146220912	+	RNA	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	.	.	.	158	6	59	0	.	.
TMEM135	65084	bcgsc.ca	37	11	87016990	87016990	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TMEM135	NM_022918	exon9	c.A711G	p.G237G	.	.	212	6	445	0	.	514
TMEM2	23670	bcgsc.ca	37	9	74349813	74349813	+	Silent	SNP	C	C	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TMEM2	NM_013390	exon6	c.G1302T	p.V434V	.	.	79	4	201	1	.	92
TMEM252	169693	bcgsc.ca	37	9	71152305	71152305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_153237	exon2	c.A383G	p.E128G	.	.	63	4	115	0	.	.
TNFAIP1	7126	bcgsc.ca	37	17	26669340	26669340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TNFAIP1	NM_021137	exon6	c.C586T	p.R196C	.	.	144	5	70	0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577150	7577150	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	TP53,colon,carcinoma,0	TP53	NM_000546	exon8	c.788delA	p.N263fs	.	.	70	33	66	0	.	70225
TPRXL	348825	bcgsc.ca	37	3	13978806	13978806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TPRXL	.	.	.	.	.	.	36	5	24	0	.	68
TRIM21	6737	bcgsc.ca	37	11	4411303	4411303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRIM21	NM_003141	exon2	c.G337A	p.V113I	.	.	97	6	98	0	.	229
TRIM22	10346	broad.mit.edu	37	11	5719588	5719588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRIM22	NM_006074	exon4	c.A563G	p.N188S	.	.	332	6	230	0	.	90
TRIM5	85363	bcgsc.ca	37	11	5686070	5686070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRIM5	NM_033034	exon8	c.T1451C	p.V484A	.	.	138	6	120	0	.	227
TRIOBP	11078	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	38119347	38119347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRIOBP	NM_001039141	exon7	c.G784A	p.A262T	.	.	122	30	62	0	.	136
TRMT61B	55006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29075273	29075273	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRMT61B	NM_017910	exon5	c.1085+1G>A	.	.	.	201	57	229	6	.	90
TRPA1	8989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72948615	72948615	+	Silent	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TRPA1	NM_007332	exon21	c.C2463A	p.P821P	.	.	316	49	294	2	.	230
TTC30A	92104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178483360	178483360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTC30A	NM_152275	exon1	c.G70C	p.D24H	.	.	54	9	30	0	.	90
TTC37	9652	bcgsc.ca	37	5	94877518	94877518	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTC37	NM_014639	exon7	c.326+1G>A	.	.	.	86	5	120	0	.	94
TTLL13	440307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90799374	90799374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTLL13	NM_001029964	exon6	c.T550A	p.Y184N	.	.	70	29	51	0	.	44
TTN	7273	bcgsc.ca	37	2	179411770	179411770	+	Silent	SNP	G	G	A	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTN	NM_001267550	exon340	c.C94482T	p.A31494A	.	.	52	4	109	0	.	636
TTPA	7274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	63973866	63973866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TTPA	NM_000370	exon5	c.A782G	p.N261S	.	.	357	69	185	0	.	90
TXNL1	9352	bcgsc.ca	37	18	54285253	54285253	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TXNL1	NM_004786	exon4	c.A474G	p.E158E	.	.	100	5	153	0	.	90
TYW1	55253	broad.mit.edu;bcgsc.ca	37	7	66582604	66582604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	TYW1	NM_018264	exon13	c.A1697G	p.K566R	.	.	75	6	132	0	.	91
UBR2	23304	bcgsc.ca	37	6	42582881	42582881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UBR2	NM_001184801	exon9	c.A1058G	p.D353G	.	.	147	7	246	0	.	94
UBR4	23352	bcgsc.ca	37	1	19413241	19413241	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UBR4	NM_020765	exon100	c.A14619G	p.K4873K	.	.	310	7	272	0	.	612
UGGT1	56886	bcgsc.ca	37	2	128872753	128872753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UGGT1	NM_020120	exon7	c.A752G	p.K251R	.	.	225	6	194	0	.	91
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70455333	70455333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UGT2A1	NM_001252274	exon7	c.C1839A	p.H613Q	.	.	289	139	328	1	.	92
UGT2B15	7366	bcgsc.ca	37	4	69512835	69512835	+	Missense_Mutation	SNP	T	T	C	rs146711063	byfrequency	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UGT2B15	NM_001076	exon6	c.A1580G	p.K527R	.	.	348	10	418	1	T|0.987;C|0.013	46
UHRF1BP1	54887	bcgsc.ca	37	6	34825117	34825117	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UHRF1BP1	NM_017754	exon12	c.T1443C	p.A481A	.	.	118	7	147	1	.	93
ULK4	54986	bcgsc.ca	37	3	41705096	41705096	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ULK4	NM_017886	exon31	c.3071+2T>C	.	.	.	92	6	79	0	.	297
UPP2	151531	bcgsc.ca	37	2	158971732	158971732	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UPP2	NM_001135098	exon5	c.A471G	p.R157R	.	.	52	4	124	0	.	90
UQCC	55245	bcgsc.ca	37	20	33954391	33954391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UQCC	NM_018244	exon6	c.T433C	p.S145P	.	.	70	5	121	0	.	153
USH2A	7399	bcgsc.ca	37	1	215955485	215955485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	USH2A	NM_206933	exon54	c.A10639G	p.T3547A	.	.	147	5	183	0	.	115
USP38	84640	bcgsc.ca	37	4	144127206	144127206	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	USP38	NM_032557	exon6	c.A1230G	p.E410E	.	.	61	4	147	0	.	660
USP4	7375	bcgsc.ca	37	3	49322299	49322299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	USP4	NM_003363	exon17	c.G2254A	p.D752N	.	.	149	6	78	0	.	660
UTP20	27340	bcgsc.ca	37	12	101774954	101774954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UTP20	NM_014503	exon58	c.C7621T	p.H2541Y	.	.	84	4	65	0	.	155
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	144758707	144758707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	UTRN	NM_007124	exon10	c.A1066G	p.M356V	.	.	56	22	64	0	.	95
VAMP1	6843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575091	6575091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VAMP1	NM_014231	exon3	c.G205C	p.A69P	.	.	240	90	124	0	.	90
VARS	7407	bcgsc.ca	37	6	31750925	31750925	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VARS	NM_006295	exon14	c.T1710C	p.S570S	.	.	159	8	87	1	.	93
VEZT	55591	bcgsc.ca	37	12	95663880	95663880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VEZT	NM_017599	exon6	c.T764C	p.L255P	.	.	155	6	148	0	.	23
VLDLR	7436	bcgsc.ca	37	9	2651428	2651428	+	Silent	SNP	T	T	C	rs1130332	alternate_allele	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VLDLR	NM_003383	exon16	c.T2265C	p.T755T	.	.	79	4	98	0	.	516
VPRBP	9730	bcgsc.ca	37	3	51456305	51456305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VPRBP	NM_014703	exon15	c.G3103A	p.E1035K	.	.	81	8	67	2	.	92
VSIG10	54621	hgsc.bcm.edu	37	12	118506333	118506333	+	Silent	SNP	C	C	T	rs199991783		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_019086	exon8	c.G1416A	p.E472E	.	.	462	26	318	0	.	.
VWDE	221806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12384011	12384011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	VWDE	NM_001135924	exon20	c.A3971C	p.N1324T	.	.	203	33	297	0	.	68
WBP4	11193	bcgsc.ca	37	13	41650225	41650225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WBP4	NM_007187	exon8	c.A608G	p.D203G	.	.	151	5	209	0	.	289
WDFY4	57705	bcgsc.ca	37	10	49951139	49951139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WDFY4	NM_020945	exon12	c.T2005C	p.W669R	.	.	171	6	113	0	.	22
WDFY4	57705	bcgsc.ca	37	10	50151412	50151412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WDFY4	NM_020945	exon49	c.T7667C	p.L2556P	.	.	57	4	62	0	.	22
WDFY4	57705	bcgsc.ca	37	10	50154170	50154170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WDFY4	NM_020945	exon50	c.T7835C	p.I2612T	.	.	164	6	143	0	.	22
WDR60	55112	bcgsc.ca	37	7	158695132	158695132	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WDR60	NM_018051	exon10	c.A1203G	p.S401S	.	.	261	7	266	1	.	92
WDR65	149465	bcgsc.ca	37	1	43700273	43700273	+	Silent	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WDR65	NM_001195831	exon22	c.C3468T	p.G1156G	.	.	68	5	61	0	.	91
WIF1	11197	bcgsc.ca	37	12	65449813	65449813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WIF1	NM_007191	exon8	c.A920G	p.K307R	.	.	112	5	124	0	.	1110
WLS	79971	bcgsc.ca	37	1	68610278	68610278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	WLS	NM_024911	exon10	c.A1336G	p.T446A	.	.	46	4	99	0	.	90
XPC	7508	hgsc.bcm.edu	37	3	14187559	14187560	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	XPC	NM_004628	exon16	c.2705_2706insG	p.A902fs	.	.	182	17	128	0	.	662
ZBED1	9189	hgsc.bcm.edu	37	X	2406709	2406710	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZBED1	NM_001171135	exon2	c.2052_2053insG	p.G684fs	.	.	194	16	141	0	.	40
ZBTB38	253461	bcgsc.ca	37	3	141162499	141162499	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZBTB38	NM_001080412	exon8	c.A1269G	p.T423T	.	.	87	4	124	0	.	25
ZBTB8A	653121	bcgsc.ca	37	1	33058537	33058537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZBTB8A	NM_001040441	exon3	c.A5G	p.E2G	.	.	141	5	164	1	.	153
ZC2HC1A	51101	bcgsc.ca	37	8	79627481	79627481	+	Missense_Mutation	SNP	A	A	G	rs111436520		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_016010	exon8	c.A730G	p.T244A	.	.	79	4	42	0	A|0.500;G|0.500	.
ZCCHC11	23318	bcgsc.ca	37	1	52912045	52912045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZCCHC11	NM_015269	exon22	c.T3583C	p.F1195L	.	.	123	5	193	1	.	93
ZCCHC7	84186	bcgsc.ca	37	9	37357067	37357067	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZCCHC7	NM_032226	exon9	c.A1434G	p.K478K	.	.	107	5	206	0	.	92
ZDHHC13	54503	bcgsc.ca	37	11	19194313	19194313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZDHHC13	NM_019028	exon16	c.A1676G	p.Q559R	.	.	115	6	96	0	.	90
ZFC3H1	196441	bcgsc.ca	37	12	72008396	72008396	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFC3H1	NM_144982	exon30	c.A5445G	p.R1815R	.	.	76	4	116	0	.	138
ZFC3H1	196441	bcgsc.ca	37	12	72024446	72024446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFC3H1	NM_144982	exon18	c.T3658C	p.S1220P	.	.	181	6	208	0	.	138
ZFPM2	23414	bcgsc.ca	37	8	106813839	106813839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFPM2	NM_012082	exon8	c.T1529C	p.V510A	.	.	232	8	187	5	.	139
ZFYVE9	9372	bcgsc.ca	37	1	52704607	52704607	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFYVE9	NM_007323	exon4	c.A1518G	p.K506K	.	.	60	4	119	1	.	230
ZFYVE9	9372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52705203	52705203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZFYVE9	NM_007323	exon4	c.G2114T	p.C705F	.	.	87	15	135	2	.	230
ZKSCAN8	7745	bcgsc.ca	37	6	28116268	28116268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_006298	exon2	c.A83G	p.E28G	.	.	191	6	127	0	.	.
ZNF117	51351	bcgsc.ca	37	7	64439457	64439457	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF117	NM_015852	exon4	c.T492C	p.P164P	.	.	67	4	117	1	.	91
ZNF14	7561	bcgsc.ca	37	19	19822387	19822387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF14	NM_021030	exon4	c.T1703C	p.F568S	.	.	79	4	174	1	.	517
ZNF197	10168	bcgsc.ca	37	3	44684354	44684354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF197	NM_006991	exon6	c.A1732G	p.S578G	.	.	77	4	79	0	.	230
ZNF227	7770	bcgsc.ca	37	19	44739139	44739139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF227	NM_182490	exon6	c.T556C	p.S186P	.	.	127	6	163	0	.	91
ZNF260	339324	broad.mit.edu;bcgsc.ca	37	19	37005902	37005902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF260	NM_001166038	exon3	c.A239G	p.K80R	.	.	307	7	337	2	.	90
ZNF267	10308	bcgsc.ca	37	16	31927613	31927613	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF267	NM_003414	exon4	c.A2043G	p.R681R	.	.	61	5	97	0	.	138
ZNF276	92822	broad.mit.edu;bcgsc.ca	37	16	89804389	89804389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF276	NM_001113525	exon11	c.A1580G	p.E527G	.	.	98	6	79	0	.	90
ZNF292	23036	bcgsc.ca	37	6	87968276	87968276	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF292	NM_015021	exon8	c.T4929C	p.A1643A	.	.	116	6	169	0	.	72
ZNF318	24149	bcgsc.ca	37	6	43325111	43325111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF318	NM_014345	exon3	c.A941G	p.E314G	.	.	192	7	212	0	.	157
ZNF439	90594	bcgsc.ca	37	19	11978883	11978883	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF439	NM_152262	exon3	c.A999G	p.K333K	.	.	80	4	147	0	.	91
ZNF519	162655	bcgsc.ca	37	18	14105012	14105012	+	Silent	SNP	A	A	G	rs190506157	by1000genomes	TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF519	NM_145287	exon3	c.T1527C	p.I509I	.	.	81	5	149	0	A|1.000;G|0.000	90
ZNF565	147929	bcgsc.ca	37	19	36673871	36673871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF565	NM_001042474	exon5	c.A997G	p.K333E	.	.	92	5	91	1	.	92
ZNF608	57507	bcgsc.ca	37	5	124036866	124036866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF608	NM_020747	exon2	c.A1003G	p.N335D	.	.	163	5	206	0	.	229
ZNF654	55279	bcgsc.ca	37	3	88188736	88188736	+	Silent	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF654	NM_018293	exon1	c.A276G	p.E92E	.	.	212	6	265	0	.	69
ZNF677	342926	bcgsc.ca	37	19	53741163	53741163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF677	NM_182609	exon5	c.A817G	p.S273G	.	.	58	4	66	0	.	91
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53747099	53747099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF677	NM_182609	exon4	c.G67C	p.E23Q	.	.	134	45	153	0	.	91
ZNF681	148213	bcgsc.ca	37	19	23926821	23926821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_138286	exon4	c.T1531C	p.C511R	.	.	47	4	49	0	.	.
ZNF681	148213	bcgsc.ca	37	19	23927035	23927035	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_138286	exon4	c.A1317G	p.E439E	.	.	118	5	128	0	.	.
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927076	23927076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	NM_138286	exon4	c.A1276G	p.K426E	.	.	134	47	161	0	.	.
ZNF709	163051	bcgsc.ca	37	19	12575215	12575215	+	Silent	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF709	NM_152601	exon4	c.A1521G	p.K507K	.	.	106	5	91	0	.	90
ZNF732	654254	broad.mit.edu	37	4	266056	266056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF732	NM_001137608	exon3	c.G587A	p.C196Y	.	.	247	8	220	2	.	22
ZNF83	55769	bcgsc.ca	37	19	53117234	53117234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF83	NM_018300	exon3	c.A584G	p.H195R	.	.	121	5	147	0	.	91
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22942280	22942281	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZNF99	NM_001080409	exon4	c.431_432insA	p.I144fs	.	.	158	51	320	0	.	24
ZYX	7791	hgsc.bcm.edu	37	7	143080154	143080155	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	ZYX	NM_003461	exon5	c.762_763insC	p.G254fs	.	.	204	14	99	0	.	90
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	1371531	1371532	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-CC-5258-01A-01D-A12Z-10	TCGA-CC-5258-10A-01D-A12Z-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	53feb92e-977d-4591-aaa1-7172f3e42965	04203961-a51c-4ee4-af73-8007d37a0113	.	.	.	.	.	p.D426I	.	.	.	.	.	.	.	
