Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160184055	160184055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ACAT2	NM_005891	exon2	c.G160T	p.E54X	.	.	224	55	214	0	.	91
ACSM4	341392	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	7470658	7470658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001080454	exon5	c.G801C	p.W267C	.	.	303	22	246	2	.	.
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45688359	45688359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ADCY1	NM_021116	exon5	c.T1111A	p.C371S	.	.	184	75	266	0	.	95
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45717579	45717579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ADCY1	NM_021116	exon9	c.T1717A	p.L573I	.	.	180	61	222	0	.	95
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62292811	62292811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	AHNAK	NM_001620	exon5	c.A9078T	p.K3026N	.	.	162	67	165	0	.	109
AKR7A3	22977	hgsc.bcm.edu	37	1	19615114	19615136	+	Frame_Shift_Del	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	AKR7A3	NM_012067	exon1	c.68_90del	p.23_30del	.	.	80	10	139	12	.	90
ALG6	29929	broad.mit.edu	37	1	63872799	63872799	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ALG6	NM_013339	exon7	c.494+2T>C	.	.	.	105	4	137	0	.	90
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139892497	139892497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANKHD1	NM_017747	exon23	c.A4189G	p.I1397V	.	.	201	125	179	0	.	185
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33548138	33548138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001244752	exon9	c.T1163G	p.I388R	.	.	113	92	154	0	.	.
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27324233	27324233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANKRD26	NM_014915	exon24	c.A3146G	p.N1049S	.	.	155	69	126	0	.	138
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101381353	101381353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ANO4	NM_178826	exon7	c.A534T	p.L178F	.	.	86	47	87	0	.	96
APOB	338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228347	21228347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	APOB	NM_000384	exon26	c.C11393G	p.T3798R	.	.	146	30	138	1	.	175
ARHGEF25	115557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58008160	58008160	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARHGEF25	NM_001111270	exon8	c.C820T	p.L274L	.	.	152	12	149	0	.	653
ARHGEF33	100271715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	39164550	39164550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARHGEF33	NM_001145451	exon7	c.C640T	p.H214Y	.	.	154	14	145	0	.	46
ARID4B	51742	broad.mit.edu	37	1	235420497	235420497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARID4B	NM_016374	exon4	c.A161G	p.D54G	.	.	168	5	126	0	.	228
ARIH2	10425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49006060	49006060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARIH2	NM_006321	exon7	c.G632C	p.R211T	.	.	145	19	177	0	.	91
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23244747	23244747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARMC3	NM_173081	exon4	c.A178G	p.K60E	.	.	64	19	43	0	.	90
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100880696	100880696	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ARMCX3	NM_016607	exon5	c.727delA	p.N243fs	.	.	177	89	161	0	.	131
ATP7A	538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77244075	77244075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ATP7A	NM_000052	exon3	c.T458C	p.L153P	.	.	237	89	199	0	.	130
BCAS1	8537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52645509	52645509	+	Missense_Mutation	SNP	C	C	T	rs146806249		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCAS1	NM_003657	exon4	c.G145A	p.D49N	.	.	36	18	33	0	C|1.000;T|0.000	652
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260278	45260278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCL3	NM_005178	exon4	c.C524T	p.P175L	.	.	537	101	210	0	.	848
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	39922123	39922123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BCOR	NM_001123385	exon9	c.A4049T	p.Y1350F	.	.	341	118	373	1	.	229
BPIFB4	149954	broad.mit.edu	37	20	31673894	31673894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_182519	exon5	c.C850T	p.R284C	.	.	153	4	115	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BPNT1	.	.	.	.	.	.	163	1	95	0	.	91
BRSK1	84446	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55795935	55795935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	BRSK1	NM_032430	exon1	c.A125T	p.K42I	.	.	554	97	320	1	.	759
C16orf96	342346	broad.mit.edu	37	16	4626471	4626471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001145011	exon5	c.T1990C	p.S664P	.	.	170	8	161	1	.	.
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	219225314	219225314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	C2orf62	NM_198559	exon5	c.G394T	p.E132X	.	.	53	34	39	0	.	68
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61193683	61193683	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CA8	NM_004056	exon1	c.A24T	p.E8D	.	.	44	19	44	0	.	90
CACTIN	58509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3612206	3612206	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_021231	exon10	c.C1992T	p.D664D	.	.	617	456	274	0	.	.
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2968238	2968238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CARD11	NM_032415	exon13	c.A1748G	p.H583R	.	.	27	9	57	0	.	870
CATSPERD	257062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5772804	5772804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_152784	exon20	c.G1769A	p.R590Q	.	.	209	65	156	0	.	.
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32207387	32207387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CBFA2T2	NM_005093	exon5	c.G512T	p.R171L	.	.	137	62	123	0	.	92
CCDC134	79879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42209427	42209427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC134	NM_024821	exon5	c.C470T	p.P157L	.	.	166	128	187	1	.	92
CCDC47	57003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61829358	61829358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC47	NM_020198	exon12	c.G1313T	p.R438I	.	.	126	73	156	0	.	90
CCDC63	160762	broad.mit.edu	37	12	111336831	111336831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CCDC63	NM_152591	exon10	c.A1244G	p.E415G	.	.	135	4	138	0	.	134
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804417	157804417	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CD5L	NM_005894	exon4	c.C498T	p.G166G	.	.	128	57	92	0	.	91
CDCP1	64866	broad.mit.edu	37	3	45153704	45153704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CDCP1	NM_178181	exon3	c.A526G	p.T176A	.	.	112	5	159	0	.	117
CDH1	999	broad.mit.edu	37	16	68849488	68849488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CDH1	NM_004360	exon10	c.T1391C	p.V464A	.	.	209	6	186	0	.	3377
CDH24	64403	ucsc.edu	37	14	23517648	23517648	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CDH24	NM_022478	exon13	c.A2001G	p.Q667Q	.	.	44	4	59	0	.	90
CEACAM18	729767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51981868	51981868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CEACAM18	NM_001080405	exon2	c.C155A	p.P52H	.	.	203	32	82	0	.	23
CEP104	9731	broad.mit.edu;bcgsc.ca	37	1	3755593	3755593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CEP104	NM_014704	exon8	c.A826G	p.M276V	.	.	145	6	193	0	.	92
CHI3L1	1116	broad.mit.edu	37	1	203150397	203150397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CHI3L1	NM_001276	exon7	c.A604G	p.S202G	.	.	130	5	110	0	.	515
CHPF	79586	mdanderson.org	37	2	220406850	220406850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CHPF	NM_024536	exon2	c.T376C	p.S126P	.	.	10	3	13	0	.	90
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	150912895	150912895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CNGA2	NM_005140	exon7	c.G1920T	p.M640I	.	.	111	8	124	0	.	193
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61467861	61467861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	COL9A3	NM_001853	exon29	c.A1580T	p.E527V	.	.	81	26	99	0	.	514
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183933105	183933105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_015101	exon6	c.C882G	p.I294M	.	.	286	129	244	0	.	.
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148927024	148927024	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CP	NM_000096	exon4	c.A755T	p.D252V	.	.	240	119	261	0	.	515
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131859581	131859581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CRAT	NM_000755	exon12	c.A1475T	p.K492M	.	.	67	27	45	0	.	90
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36691797	36691797	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CRIM1	NM_016441	exon5	c.T990C	p.N330N	.	.	268	83	294	0	.	118
CTBP2	1488	ucsc.edu	37	10	126678253	126678253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CTBP2	NM_022802	exon9	c.T2792C	p.I931T	.	.	39	4	42	0	.	90
CTNNBL1	56259	broad.mit.edu	37	20	36406088	36406088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CTNNBL1	NM_030877	exon9	c.A856G	p.I286V	.	.	480	6	353	0	.	228
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136872834	136872834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CXCR4	NM_001008540	exon1	c.A676T	p.I226F	.	.	126	85	133	0	.	1082
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61513455	61513455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	CYB561	NM_001915	exon3	c.C261A	p.H87Q	.	.	99	58	116	0	.	91
DCHS2	54798	broad.mit.edu;bcgsc.ca	37	4	155156791	155156791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DCHS2	NM_017639	exon25	c.T7648C	p.F2550L	.	.	155	8	108	0	.	94
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155243495	155243495	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DCHS2	NM_017639	exon13	c.T2799A	p.V933V	.	.	110	48	85	0	.	94
DENND5A	23258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	9192221	9192221	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DENND5A	NM_001243254	exon9	c.C2010T	p.F670F	.	.	242	16	197	1	.	91
DHX8	1659	bcgsc.ca	37	17	41577340	41577340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DHX8	NM_004941	exon11	c.T1415C	p.L472P	.	.	68	5	77	0	.	229
DLG1	1739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197023346	197023346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DLG1	NM_001204386	exon3	c.A22T	p.T8S	.	.	116	49	81	0	.	118
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118469442	118469442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DMXL1	NM_005509	exon12	c.T1823A	p.L608Q	.	.	194	52	176	0	.	92
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51828802	51828802	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DMXL2	NM_001174117	exon12	c.A1875T	p.A625A	.	.	94	69	165	1	.	99
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21061288	21061288	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DNAH3	NM_017539	exon30	c.A4290T	p.P1430P	.	.	62	25	65	0	.	167
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128798514	128798514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DOCK1	NM_001380	exon10	c.A928T	p.R310W	.	.	125	46	132	0	.	698
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2214500	2214500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DOT1L	NM_032482	exon19	c.G1828T	p.D610Y	.	.	384	18	172	0	.	132
DRG1	4733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31799026	31799026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DRG1	NM_004147	exon3	c.G178T	p.A60S	.	.	277	13	417	0	.	90
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117301488	117301488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DSCAML1	NM_020693	exon32	c.C5816T	p.A1939V	.	.	152	9	140	0	.	159
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	45427708	45427708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DUOX1	NM_017434	exon7	c.A532G	p.I178V	.	.	44	22	126	0	.	142
DUSP22	56940	broad.mit.edu	37	6	350853	350853	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	DUSP22	NM_020185	exon8	c.T540C	p.F180F	.	.	243	7	171	0	.	252
EFNA4	1945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155039354	155039354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EFNA4	NM_182690	exon2	c.G262T	p.A88S	.	.	236	82	172	0	.	115
EGFL6	25975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13645318	13645318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EGFL6	NM_001167890	exon11	c.G1477C	p.E493Q	.	.	126	58	117	0	.	193
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38350697	38350697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EGFLAM	NM_001205301	exon4	c.G386C	p.R129P	.	.	75	23	74	0	.	187
ENTHD1	150350	mdanderson.org	37	22	40140137	40140137	+	Silent	SNP	G	G	C	rs114978051	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ENTHD1	NM_152512	exon7	c.C1371G	p.T457T	.	.	80	56	104	0	G|0.999;T|0.001	93
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222365784	222365784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EPHA4	NM_004438	exon4	c.G932A	p.R311Q	.	.	56	12	62	0	.	1441
EVC2	132884	broad.mit.edu	37	4	5624449	5624449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EVC2	NM_147127	exon14	c.C2316A	p.F772L	.	.	307	8	220	0	.	155
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242024779	242024779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	EXO1	NM_130398	exon10	c.A1016G	p.D339G	.	.	95	43	61	0	.	661
FABP9	646480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82371529	82371529	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FABP9	NM_001080526	exon2	c.G117T	p.P39P	.	.	249	59	150	0	.	22
FAM133CP	728640	ucsc.edu	37	10	60475441	60475441	+	RNA	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	39	17	32	0	.	.
FAM217B	63939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58519115	58519115	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_022106	exon4	c.T117A	p.A39A	.	.	189	62	136	0	.	.
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55870535	55870535	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001145402	exon9	c.G1701A	p.L567L	.	.	161	25	61	0	.	.
FAM73B	84895	broad.mit.edu	37	9	131812215	131812215	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FAM73B	NM_032809	exon6	c.A648G	p.P216P	.	.	218	7	169	0	.	91
FAT2	2196	broad.mit.edu	37	5	150923228	150923228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FAT2	NM_001447	exon9	c.A7460G	p.E2487G	.	.	337	6	276	0	.	96
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127714494	127714494	+	Missense_Mutation	SNP	G	G	T	rs199720456	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBN2	NM_001999	exon12	c.C1693A	p.Q565K	.	.	89	31	102	0	G|0.999;A|0.001	146
FBXO36	130888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230787284	230787284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBXO36	NM_174899	exon1	c.C55G	p.P19A	.	.	205	41	248	0	.	227
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153273838	153273838	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FBXW7	NM_018315	exon1	c.T45A	p.L15L	.	.	57	17	55	0	.	6296
FGFBP1	9982	broad.mit.edu	37	4	15937894	15937894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FGFBP1	NM_005130	exon3	c.G362A	p.R121H	.	.	185	4	177	2	.	90
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34205566	34205566	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FHOD3	NM_025135	exon10	c.C1050T	p.G350G	.	.	188	85	136	0	.	139
FHOD3	80206	ucsc.edu;bcgsc.ca	37	18	34182638	34182638	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FHOD3	NM_025135	exon8	c.G720A	p.G240G	.	.	220	93	183	2	.	139
FMN1	342184	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33359290	33359290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FMN1	NM_001103184	exon1	c.T796A	p.S266T	.	.	88	62	119	1	.	23
FSHR	2492	ucsc.edu	37	2	49295425	49295425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	FSHR	NM_181446	exon2	c.T157C	p.F53L	.	.	35	4	42	0	.	527
GABRA3	2556	broad.mit.edu	37	X	151366178	151366178	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GABRA3	NM_000808	exon8	c.T858C	p.C286C	.	.	200	6	209	0	.	131
GBP3	2635	bcgsc.ca	37	1	89477593	89477631	+	In_Frame_Del	DEL	GCCTTTTGCACTGCGGCTGAGTTCTCTATCTGGGCCAAG	GCCTTTTGCACTGCGGCTGAGTTCTCTATCTGGGCCAAG	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	GCCTTTTGCACTGCGGCTGAGTTCTCTATCTGGGCCAAG	GCCTTTTGCACTGCGGCTGAGTTCTCTATCTGGGCCAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GBP3	NM_018284	exon7	c.948_986del	p.316_329del	.	.	347	8	501	0	.	92
GINS3	64785	bcgsc.ca	37	16	58437178	58437178	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GINS3	NM_001126129	exon3	c.C480T	p.S160S	.	.	83	5	91	0	.	90
GPX6	257202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28478622	28478622	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GPX6	.	.	.	.	.	.	127	59	130	0	.	95
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14555217	14555217	+	RNA	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GRIP2	.	.	.	.	.	.	140	40	121	0	.	69
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86416221	86416221	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	GRM3	NM_000840	exon3	c.C1113T	p.R371R	.	.	88	36	95	0	.	528
HCN4	10021	broad.mit.edu;mdanderson.org	37	15	73615574	73615574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HCN4	NM_005477	exon8	c.C2860G	p.L954V	.	.	15	7	27	0	.	96
HELB	92797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66703544	66703544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HELB	NM_033647	exon4	c.A836T	p.Q279L	.	.	156	101	147	0	.	515
HIP1R	9026	broad.mit.edu	37	12	123343489	123343489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HIP1R	NM_003959	exon21	c.G2155A	p.D719N	.	.	178	4	205	1	.	91
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42048714	42048714	+	Silent	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HIVEP3	NM_024503	exon4	c.G1755C	p.R585R	.	.	91	68	115	0	.	157
HLA-A	3105	hgsc.bcm.edu	37	6	29911228	29911261	+	Frame_Shift_Del	DEL	AGGCGGAGCAGTTGAGAGCCTACCTGGATGGCAC	AGGCGGAGCAGTTGAGAGCCTACCTGGATGGCAC	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	AGGCGGAGCAGTTGAGAGCCTACCTGGATGGCAC	AGGCGGAGCAGTTGAGAGCCTACCTGGATGGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HLA-A	NM_001242758	exon3	c.527_560del	p.176_187del	.	.	343	0	226	0	.	92
HLA-DPB1	3115	hgsc.bcm.edu	37	6	33048530	33048530	+	Missense_Mutation	SNP	G	G	A	rs41561114	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HLA-DPB1	NM_002121	exon2	c.G182A	p.R61Q	.	.	99	9	71	0	.	515
HPD	3242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122287654	122287654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HPD	NM_002150	exon8	c.A457G	p.I153V	.	.	165	36	140	0	.	90
HS6ST1	9394	broad.mit.edu	37	2	129025902	129025902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HS6ST1	NM_004807	exon2	c.A1070G	p.Q357R	.	.	487	49	404	0	.	91
HSH2D	84941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16263989	16263989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_032855	exon6	c.A352G	p.R118G	.	.	74	9	62	1	.	.
HSPA6	3310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161495008	161495008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	HSPA6	NM_002155	exon1	c.T560A	p.L187Q	.	.	314	120	267	0	.	226
IDO2	169355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39873103	39873103	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IDO2	NM_194294	exon11	c.C1245A	p.I415I	.	.	92	39	95	0	.	24
IFNGR1	3459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	137519200	137519200	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IFNGR1	NM_000416	exon7	c.A1438T	p.R480X	.	.	161	88	137	0	.	91
IMPG1	3617	ucsc.edu	37	6	76717219	76717219	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	IMPG1	NM_001563	exon10	c.867-2A>G	.	.	.	35	4	45	0	.	93
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54780134	54780134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_198510	exon11	c.T3302A	p.L1101Q	.	.	168	82	145	0	.	.
KCNG1	3755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49621256	49621256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNG1	NM_002237	exon3	c.A862G	p.I288V	.	.	256	113	196	0	.	515
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73879546	73879546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNQ5	NM_001160133	exon12	c.C1603T	p.P535S	.	.	195	98	150	0	.	158
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	43727336	43727336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCNS1	NM_002251	exon4	c.G77A	p.G26E	.	.	52	18	47	0	.	90
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177224	44177224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KCTD8	NM_198353	exon2	c.T1005A	p.D335E	.	.	113	53	116	0	.	92
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154395188	154395188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KIF4B	NM_001099293	exon1	c.A1769G	p.N590S	.	.	157	7	145	0	.	1
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	86873049	86873049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	KLHL4,NS,carcinoma,0	KLHL4	NM_019117	exon4	c.C842A	p.P281H	.	.	343	155	335	0	.	133
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135009191	135009191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KNDC1	NM_152643	exon10	c.G1600A	p.V534I	.	.	257	65	346	0	.	229
KRT34	3885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39535916	39535916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRT34	NM_021013	exon4	c.T782C	p.V261A	.	.	126	89	188	0	.	90
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39597173	39597173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRT38	NM_006771	exon1	c.A1G	p.M1V	.	.	153	118	198	0	.	92
KRTAP4-2	85291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39334191	39334191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	KRTAP4-2	NM_033062	exon1	c.T226A	p.C76S	.	.	85	66	74	0	.	44
LGALS9B	284194	broad.mit.edu	37	17	20363690	20363690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	LGALS9B	NM_001042685	exon2	c.G106A	p.A36T	.	.	947	13	1094	0	.	23
LGALS9B	284194	broad.mit.edu	37	17	20363711	20363711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	LGALS9B	NM_001042685	exon2	c.T85C	p.F29L	.	.	903	12	1063	1	.	23
LOC100132831	0	ucsc.edu	37	X	40690972	40690972	+	RNA	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	28	16	18	0	.	.
LOC441455	0	bcgsc.ca	37	9	99488804	99488804	+	RNA	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	56	18	33	0	.	.
LRGUK	136332	ucsc.edu	37	7	133848183	133848183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	LRGUK	NM_144648	exon7	c.A830G	p.E277G	.	.	26	4	15	0	.	227
LRRC37BP1	147172	broad.mit.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	61	5	65	1	.	.
LRRC61	65999	hgsc.bcm.edu	37	7	150034607	150034789	+	Frame_Shift_Del	DEL	CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT	CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT	CTGCCGGCAGTTCCAGGACACACTGCAGGAGTGCTGGGACCTGGACCGCCAGGCCAGCGACAGCCTGGCCCAGGCGGAGCAGGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCTGAACGTGGCCTATGGCCCAGGACAGCCTGGCAGGTGGCCTCGCTGCCCCCAGTTCCCCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	LRRC61	NM_023942	exon2	c.657_1278del	p.219_260del	.	.	34	0	44	0	.	90
MAGEB18	286514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	26157856	26157856	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAGEB18	NM_173699	exon2	c.A754T	p.K252X	.	.	251	79	245	0	.	130
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140983104	140983104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAGEC3	NM_138702	exon5	c.T959C	p.L320P	.	.	337	132	329	1	.	555
MAK	4117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	10818123	10818123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAK	NM_005906	exon4	c.G238T	p.E80X	.	.	150	54	139	0	.	335
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139749459	139749459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MAMDC4	NM_206920	exon10	c.C1094T	p.P365L	.	.	74	37	42	0	.	156
MATR3	9782	broad.mit.edu	37	5	138655060	138655060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MATR3	NM_018834	exon9	c.A1472G	p.K491R	.	.	330	6	281	0	.	91
MCM8	84515	ucsc.edu	37	20	5974307	5974307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MCM8	NM_032485	exon18	c.A2396G	p.Q799R	.	.	38	4	19	0	.	227
MED18	54797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28657195	28657195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MED18	NM_017638	exon2	c.A22G	p.M8V	.	.	137	113	159	0	.	226
MIR600HG	81571	ucsc.edu;mdanderson.org	37	9	125873077	125873077	+	RNA	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	111	45	93	0	.	.
MSANTD1	345222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	3251094	3251094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001042690	exon1	c.G145T	p.A49S	.	.	90	29	66	0	.	.
MST1L	11223	broad.mit.edu;bcgsc.ca	37	1	17085033	17085033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001271733	exon11	c.A1442T	p.Q481L	.	.	510	79	710	0	.	.
MTMR8	55613	broad.mit.edu	37	X	63564967	63564967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MTMR8	NM_017677	exon7	c.A823G	p.N275D	.	.	261	5	219	0	.	195
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9065780	9065780	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MUC16	NM_024690	exon3	c.T21666A	p.T7222T	.	.	153	106	270	1	.	566
MUC4	4585	broad.mit.edu	37	3	195509563	195509563	+	Missense_Mutation	SNP	A	A	T	rs28605870		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MUC4	NM_018406	exon2	c.T8888A	p.V2963D	.	.	158	5	178	1	.	90
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16761637	16761637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MYO10	NM_012334	exon17	c.G1675T	p.G559C	.	.	53	29	59	0	.	3
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52622690	52622690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	MYO5A	NM_000259	exon34	c.A4340T	p.Q1447L	.	.	154	101	192	0	.	93
MYRF	745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61547380	61547380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001127392	exon17	c.C2314G	p.L772V	.	.	270	129	296	0	.	.
NBPF10	100132406	broad.mit.edu	37	1	145323667	145323667	+	Missense_Mutation	SNP	C	C	G	rs199626421		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001039703	exon27	c.C3504G	p.D1168E	.	.	50	5	51	1	.	.
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113078628	113078628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NCAM1	NM_001242608	exon8	c.A820G	p.I274V	.	.	95	37	75	0	.	23
NDNF	79625	broad.mit.edu	37	4	121966956	121966956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NDNF	NM_024574	exon2	c.T37C	p.F13L	.	.	205	5	212	0	.	90
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152418677	152418677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NEB	NM_001271208	exon121	c.T18943G	p.W6315G	.	.	90	7	81	0	.	145
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152502668	152502668	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NEB	NM_004543	exon55	c.A7512G	p.K2504K	.	.	136	6	106	0	.	145
NELL2	4753	broad.mit.edu	37	12	45173469	45173469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NELL2	NM_001145107	exon6	c.A733G	p.N245D	.	.	148	4	108	0	.	517
NET1	10276	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5494450	5494450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NET1	NM_001047160	exon5	c.A493G	p.K165E	.	.	146	8	109	0	.	290
NFS1	9054	broad.mit.edu	37	20	34261539	34261539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NFS1	NM_021100	exon11	c.G1204A	p.A402T	.	.	323	8	201	0	.	92
NINL	22981	broad.mit.edu;bcgsc.ca	37	20	25450673	25450673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NINL	NM_025176	exon18	c.G3307C	p.V1103L	.	.	211	8	152	0	.	94
NOV	4856	broad.mit.edu	37	8	120430467	120430467	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NOV	NM_002514	exon3	c.A480G	p.K160K	.	.	410	9	231	1	.	228
NSDHL	50814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152018893	152018893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	NSDHL	NM_015922	exon3	c.A193G	p.N65D	.	.	229	102	240	0	.	130
OBSCN	84033	broad.mit.edu	37	1	228482530	228482530	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	OBSCN	NM_001271223	exon48	c.A12732G	p.E4244E	.	.	403	7	304	1	.	403
OR1S2	219958	broad.mit.edu	37	11	57970760	57970760	+	Missense_Mutation	SNP	C	C	T	rs200054918		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	OR1S2	NM_001004459	exon1	c.G894A	p.M298I	.	.	146	4	124	1	.	69
OR2T1	26696	broad.mit.edu	37	1	248570257	248570257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	OR2T1	NM_030904	exon1	c.A962G	p.D321G	.	.	298	5	199	0	.	69
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56468094	56468094	+	Silent	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001013358	exon1	c.C231A	p.T77T	.	.	234	53	199	0	.	.
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80730730	80730730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_173591	exon41	c.G4779C	p.K1593N	.	.	116	61	81	0	.	.
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	107719001	107719001	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	OXR1	NM_001198532	exon8	c.G1255T	p.E419X	.	.	177	19	80	0	.	68
PAK3	5063	broad.mit.edu	37	X	110366404	110366404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PAK3	NM_001128166	exon3	c.T73C	p.S25P	.	.	247	5	227	0	.	1043
PANK3	79646	ucsc.edu	37	5	167988433	167988433	+	Missense_Mutation	SNP	T	T	A	rs77612793	byfrequency	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PANK3	NM_024594	exon5	c.A901T	p.I301F	.	.	52	22	52	6	T|0.947;A|0.053	91
PAPD5	64282	broad.mit.edu;bcgsc.ca	37	16	50259196	50259196	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PAPD5	NM_001040284	exon11	c.A1755G	p.V585V	.	.	121	45	99	2	.	205
PAPSS2	9060	bcgsc.ca	37	10	89504793	89504793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PAPSS2	NM_001015880	exon12	c.G1526T	p.G509V	.	.	103	6	133	0	.	493
PAX9	5083	broad.mit.edu	37	14	37132211	37132211	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PAX9	NM_006194	exon3	c.A114G	p.R38R	.	.	119	6	141	1	.	228
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	55996688	55996688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCDH15	NM_001142763	exon10	c.G895T	p.E299X	.	.	156	42	129	0	.	193
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	67801363	67801363	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCDH9	NM_203487	exon2	c.G1210T	p.E404X	.	.	71	62	108	0	.	96
PCF11	51585	hgsc.bcm.edu;bcgsc.ca	37	11	82879771	82879771	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCF11	NM_015885	exon8	c.2394delG	p.M798fs	.	.	117	16	80	0	.	23
PCYT1B	9468	broad.mit.edu	37	X	24597571	24597571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PCYT1B	NM_001163265	exon6	c.G570A	p.M190I	.	.	198	6	167	0	.	130
PDE4DIP	9659	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	144923732	144923732	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PDE4DIP	NM_001002811	exon2	c.A1215T	p.A405A	.	.	448	125	410	0	.	663
PEPD	5184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34001941	34001941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PEPD	NM_000285	exon3	c.A322T	p.M108L	.	.	88	30	64	0	.	92
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153318651	153318651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PGLYRP4	NM_020393	exon3	c.C66A	p.N22K	.	.	302	141	229	0	.	94
PHF5A	84844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41863491	41863491	+	Silent	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHF5A	NM_032758	exon3	c.T204C	p.D68D	.	.	141	99	171	0	.	91
PHLDB2	90102	hgsc.bcm.edu	37	3	111603108	111603109	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.265_266del	p.89_89del	.	.	110	0	103	0	.	96
PHLDB2	90102	hgsc.bcm.edu;bcgsc.ca	37	3	111603109	111603109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.T266G	p.L89R	.	.	111	68	100	0	.	96
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111603106	111603106	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PHLDB2	NM_001134437	exon3	c.263delC	p.T88fs	.	.	111	66	102	0	.	96
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	PIK3CA,brain,glioma,0	PIK3CA	NM_006218	exon10	c.G1624A	p.E542K	.	.	361	157	331	0	.	27752
PIP4K2C	79837	ucsc.edu	37	12	57987814	57987814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIP4K2C	NM_001146258	exon2	c.G181A	p.E61K	.	.	40	4	50	0	.	689
PIP5K1B	8395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71491629	71491629	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIP5K1B	NM_003558	exon6	c.A237T	p.P79P	.	.	127	57	102	0	.	240
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22146165	22146165	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PIWIL2	NM_001135721	exon8	c.T972C	p.N324N	.	.	188	105	185	0	.	91
PLEKHH1	57475	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68038889	68038889	+	Silent	SNP	C	C	T	rs116547943		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PLEKHH1	NM_020715	exon11	c.C1623T	p.Y541Y	.	.	64	51	92	0	C|0.992;T|0.008	22
PLXDC2	84898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	20453406	20453406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PLXDC2	NM_032812	exon7	c.793delT	p.L265fs	.	.	105	43	86	0	.	93
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	49126933	49126933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PPP1R3F	NM_033215	exon1	c.C601T	p.R201C	.	.	36	14	28	0	.	229
PREX2	80243	broad.mit.edu;bcgsc.ca	37	8	69009253	69009253	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PREX2	NM_025170	exon22	c.G2370A	p.E790E	.	.	163	6	105	0	.	390
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	69104009	69104009	+	Missense_Mutation	SNP	G	G	T	rs202233704	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PREX2	NM_024870	exon36	c.G4399T	p.A1467S	.	.	445	26	233	0	G|0.999;A|0.000	390
PRKDC	5591	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	48815178	48815178	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRKDC	.	.	.	.	.	.	74	35	87	0	.	1515
PRR25	388199	bcgsc.ca	37	16	855532	855532	+	Silent	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRR25	NM_001013638	exon1	c.C90G	p.P30P	.	.	53	11	57	0	.	135
PRSS37	136242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141537672	141537672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PRSS37	NM_001171951	exon3	c.C418A	p.Q140K	.	.	175	78	214	0	.	91
PSMA7	5688	mdanderson.org	37	20	60718274	60718274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PSMA7	NM_002792	exon1	c.G86A	p.G29D	.	.	15	3	9	0	.	90
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231937074	231937074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PSMD1	NM_002807	exon7	c.G826T	p.A276S	.	.	113	18	104	0	.	92
PSME4	23198	broad.mit.edu	37	2	54125077	54125077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PSME4	NM_014614	exon31	c.G3536C	p.R1179P	.	.	393	8	342	0	.	275
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	48036326	48036326	+	Silent	SNP	C	C	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001013732	exon1	c.G66C	p.V22V	.	.	127	61	78	0	.	.
PTH2R	5746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209345847	209345847	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PTH2R	NM_005048	exon10	c.1034delG	p.W345fs	.	.	258	161	212	0	.	502
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80936556	80936556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001145026	exon20	c.G3253T	p.D1085Y	.	.	207	25	173	0	.	.
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52322116	52322116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	PXDNL	NM_144651	exon17	c.C2068T	p.R690W	.	.	108	56	121	0	.	70
RAI2	10742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	17819079	17819079	+	Missense_Mutation	SNP	C	C	T	rs140631545		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RAI2	NM_001172739	exon3	c.G1052A	p.R351Q	.	.	149	12	132	0	C|1.000;T|0.000	131
RANBP6	26953	broad.mit.edu	37	9	6012658	6012658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RANBP6	NM_012416	exon1	c.A2950C	p.I984L	.	.	142	4	175	1	.	229
RAP1GAP2	23108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2929754	2929754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RAP1GAP2	NM_015085	exon21	c.G1976A	p.S659N	.	.	119	98	144	0	.	1
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53540730	53540730	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RB1CC1	NM_014781	exon23	c.4500-2A>C	.	.	.	75	22	51	0	.	170
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103292164	103292164	+	Silent	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RELN	NM_173054	exon15	c.C1836A	p.I612I	.	.	76	42	104	0	.	574
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192128370	192128370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RGS18	NM_130782	exon2	c.G140C	p.R47T	.	.	141	15	81	0	.	229
RIMBP3	85376	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	20458548	20458548	+	Silent	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_015672	exon1	c.C2754G	p.L918L	.	.	652	37	1012	0	.	.
RNASET2	8635	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167343204	167343204	+	Missense_Mutation	SNP	C	C	T	rs41269593	byfrequency	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RNASET2	NM_003730	exon9	c.G643A	p.E215K	.	.	55	16	64	0	C|0.996;T|0.004	90
RNU6-81	100873780	ucsc.edu	37	2	132287416	132287416	+	RNA	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	165	28	198	0	.	.
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83389790	83389790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RPS6KA6	NM_014496	exon8	c.G646A	p.D216N	.	.	144	47	109	0	.	615
RYR2	6262	broad.mit.edu	37	1	237732446	237732446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	RYR2	NM_001035	exon29	c.C3425A	p.A1142D	.	.	310	10	197	1	.	158
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134989876	134989876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SAGE1	NM_018666	exon10	c.C1035A	p.H345Q	.	.	235	97	215	0	.	133
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92732475	92732475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SAMD9	NM_001193307	exon2	c.G2936T	p.C979F	.	.	122	47	147	0	.	140
SCAI	286205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127734043	127734043	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCAI	NM_173690	exon17	c.A1549T	p.S517C	.	.	197	93	147	0	.	138
SCAND3	114821	broad.mit.edu	37	6	28541029	28541029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCAND3	NM_052923	exon4	c.G2637T	p.Q879H	.	.	239	4	177	0	.	91
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38888226	38888226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SCN11A	NM_014139	exon26	c.T5335A	p.S1779T	.	.	191	99	211	0	.	99
SDCCAG3	10807	bcgsc.ca	37	9	139301785	139301785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SDCCAG3	NM_001039707	exon5	c.T631G	p.Y211D	.	.	80	5	70	0	.	90
SIGLEC11	114132	broad.mit.edu	37	19	50463849	50463849	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SIGLEC11	NM_052884	exon2	c.A420G	p.R140R	.	.	1020	10	387	0	.	94
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44838314	44838314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SIK1	NM_173354	exon12	c.C1570T	p.P524S	.	.	55	39	52	0	.	346
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	119001223	119001223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC18A2	NM_003054	exon2	c.G19C	p.A7P	.	.	61	38	86	0	.	90
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	172700890	172700890	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC25A12	NM_003705	exon5	c.C454T	p.Q152X	.	.	77	49	85	0	.	90
SLC35B3	51000	hgsc.bcm.edu;broad.mit.edu	37	6	8430331	8430332	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC35B3	NM_001142541	exon3	c.63_64insA	p.N21fs	.	.	423	11	372	0	.	90
SLC44A5	204962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75683604	75683604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC44A5	NM_152697	exon18	c.C1571A	p.A524E	.	.	99	69	126	1	.	95
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75683603	75683603	+	Silent	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SLC44A5	NM_152697	exon18	c.A1572C	p.A524A	.	.	102	71	126	0	.	95
SLC6A10P	386757	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	32891008	32891008	+	RNA	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	.	.	.	257	66	248	0	.	.
SOAT1	6646	broad.mit.edu	37	1	179320526	179320526	+	Silent	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SOAT1	NM_003101	exon15	c.T1525C	p.L509L	.	.	480	7	284	0	.	515
SPATA5	166378	hgsc.bcm.edu;bcgsc.ca	37	4	123978434	123978445	+	Frame_Shift_Del	DEL	AAAGGGGCAGGT	AAAGGGGCAGGT	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	AAAGGGGCAGGT	AAAGGGGCAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPATA5	NM_145207	exon13	c.2204_2213del	p.735_738del	.	.	148	0	182	0	.	90
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158590172	158590172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPTA1	NM_003126	exon44	c.C6205A	p.P2069T	.	.	423	36	307	0	.	142
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66463896	66463896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SPTBN2	NM_006946	exon20	c.G4130A	p.R1377H	.	.	66	23	48	0	.	155
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104149204	104149204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	STAB2	NM_017564	exon62	c.A6839G	p.N2280S	.	.	156	86	149	0	.	104
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57493655	57493655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	STAT6	NM_001178079	exon15	c.G1639A	p.V547I	.	.	169	43	185	0	.	849
STRIP1	85369	broad.mit.edu;bcgsc.ca	37	1	110586378	110586378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_033088	exon10	c.T1186C	p.F396L	.	.	162	7	181	0	.	.
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu	37	20	58467120	58467121	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYCP2	NM_014258	exon23	c.2289_2290insA	p.N763fs	.	.	195	15	150	0	.	525
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	33411166	33411166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYNGAP1	NM_006772	exon15	c.G2837C	p.G946A	.	.	123	71	104	0	.	48
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	75414002	75414002	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	SYNPO2L	NM_001114133	exon2	c.C142T	p.R48X	.	.	143	14	175	0	.	91
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166571945	166571945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	T	NM_003181	exon9	c.C1166T	p.P389L	.	.	151	48	117	0	.	516
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70617219	70617219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TAF1	NM_004606	exon23	c.G3583A	p.E1195K	.	.	569	217	520	1	.	900
TAF1B	9014	broad.mit.edu	37	2	10059771	10059771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TAF1B	NM_005680	exon14	c.T1387C	p.S463P	.	.	231	5	235	0	.	92
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101670763	101670763	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TBC1D8	NM_001102426	exon4	c.C393T	p.A131A	.	.	87	14	64	0	.	25
TCF4	6925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	53018190	53018190	+	Silent	SNP	G	G	A	rs201061418	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCF4	NM_001243226	exon8	c.C720T	p.T240T	.	.	205	102	182	1	G|0.999;C|0.000	523
TCL6	27004	broad.mit.edu	37	14	96134897	96134897	+	RNA	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCL6	.	.	.	.	.	.	5	5	8	0	.	658
TCP10L	140290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33954534	33954534	+	Silent	SNP	G	G	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TCP10L	NM_144659	exon3	c.C336T	p.H112H	.	.	240	112	321	0	.	90
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	65274943	65274943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TECRL	NM_001010874	exon1	c.G127A	p.A43T	.	.	123	12	123	0	.	90
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183601698	183601698	+	Missense_Mutation	SNP	G	G	A	rs193270446	by1000genomes	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_001080477	exon9	c.G1642A	p.A548T	.	.	161	46	123	0	G|0.999;A|0.001	.
TINAG	27283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	54186162	54186162	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TINAG	NM_014464	exon3	c.C487T	p.Q163X	.	.	44	26	49	0	.	93
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111794166	111794166	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TMPRSS7	NM_001042575	exon13	c.1406-2A>G	.	.	.	104	6	109	0	.	70
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579312	7579312	+	Silent	SNP	C	C	A	rs55863639		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	TP53,mouth,carcinoma,-1	TP53	NM_000546	exon4	c.G375T	p.T125T	.	.	159	124	157	0	.	70225
TRAF7	84231	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2225896	2225896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRAF7	NM_032271	exon18	c.A1688T	p.Y563F	.	.	217	87	195	1	.	661
TRIP12	9320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230672989	230672989	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRIP12	NM_004238	exon15	c.A2174T	p.Y725F	.	.	30	5	43	0	.	572
TROVE2	6738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193046176	193046176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TROVE2	NM_004600	exon5	c.T1082G	p.F361C	.	.	154	64	90	0	.	115
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116599692	116599692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	TRPS1	NM_014112	exon5	c.A2236T	p.I746L	.	.	465	84	267	0	.	229
UBC	7316	broad.mit.edu;bcgsc.ca	37	12	125398140	125398140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	UBC	NM_021009	exon2	c.A178C	p.N60H	.	.	271	10	257	1	.	46
UBE2D3	7323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103722609	103722609	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	UBE2D3	NM_003340	exon7	c.304+2T>G	.	.	.	239	179	274	0	.	226
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94079314	94079314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	NM_020818	exon27	c.A3395T	p.K1132M	.	.	104	84	136	0	.	.
UPRT	139596	broad.mit.edu	37	X	74523255	74523255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	UPRT	NM_145052	exon7	c.T839C	p.I280T	.	.	594	9	531	0	.	130
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216073535	216073535	+	Silent	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	USH2A	NM_206933	exon40	c.G7476A	p.S2492S	.	.	94	35	62	0	.	115
USP29	57663	broad.mit.edu	37	19	57641364	57641364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	USP29	NM_020903	exon4	c.T1321C	p.C441R	.	.	389	8	169	0	.	661
VEGFC	7424	hgsc.bcm.edu	37	4	177605084	177605085	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.1255_1256del	p.419_419del	.	.	103	49	85	0	.	710
VEGFC	7424	hgsc.bcm.edu	37	4	177605084	177605087	+	Frame_Shift_Del	DEL	ATCA	ATCA	-	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	ATCA	ATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.1253_1256del	p.418_419del	.	.	103	0	85	0	.	710
VEGFC	7424	hgsc.bcm.edu;bcgsc.ca	37	4	177605087	177605087	+	Frame_Shift_Del	DEL	A	A	-	rs72533463	alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.1253delT	p.M418fs	.	.	103	49	83	0	.	710
VEGFC	7424	hgsc.bcm.edu;bcgsc.ca	37	4	177605087	177605087	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	VEGFC	NM_005429	exon7	c.T1253G	p.M418R	.	.	108	8	84	0	.	710
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49917873	49917873	+	Silent	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	WDFY4	NM_020945	exon2	c.A96T	p.P32P	.	.	65	21	68	1	.	22
WDR64	128025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241946598	241946598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	WDR64	NM_144625	exon22	c.C2590T	p.R864C	.	.	139	14	98	0	.	91
ZC3H11A	9877	broad.mit.edu	37	1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	.	.	414	5	356	0	.	515
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	197	4	167	1	.	515
ZMYM3	9203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70467743	70467743	+	Silent	SNP	C	C	T	rs200745411		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZMYM3	NM_005096	exon12	c.G1989A	p.L663L	.	.	204	67	190	0	.	131
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58578450	58578450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF135	NM_007134	exon4	c.G670C	p.D224H	.	.	110	34	50	0	.	91
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219508734	219508734	+	Silent	SNP	G	G	T	rs185508464	byfrequency;alternate_allele	TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF142	NM_001105537	exon8	c.C2505A	p.A835A	.	.	114	30	114	0	G|0.998;A|0.002	137
ZNF224	7767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44611314	44611314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF224	NM_013398	exon6	c.A1001T	p.H334L	.	.	175	44	74	0	.	92
ZNF260	339324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37005748	37005748	+	Silent	SNP	T	T	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF260	NM_001166038	exon3	c.A393T	p.T131T	.	.	211	40	86	1	.	90
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178505747	178505747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF354C	NM_014594	exon5	c.C314A	p.T105K	.	.	168	19	153	0	.	91
ZNF45	7596	broad.mit.edu	37	19	44419094	44419094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF45	NM_003425	exon10	c.A494G	p.K165R	.	.	508	6	210	0	.	91
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	37210908	37210908	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF567	NM_152603	exon4	c.A1189T	p.K397X	.	.	97	10	39	0	.	90
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	23544469	23544469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	ZNF91	NM_003430	exon4	c.G1312A	p.E438K	.	.	51	9	62	0	.	90
TCHH	7062	hgsc.bcm.edu	37	1	152081179	152081180	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-CC-5259-01A-31D-A20W-10	TCGA-CC-5259-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b2e2280d-a133-4737-b089-f4aab5b894a3	17b4c09e-50c8-408e-999f-5b31e55417fe	.	.	.	.	.	p.E1505L	.	.	.	.	.	.	.	
