Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASS	10157	broad.mit.edu;bcgsc.ca	37	7	121726206	121726206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AASS	NM_005763	exon19	c.T2044C	p.F682L	.	.	71	4	99	1	.	92
ABCA10	10349	bcgsc.ca	37	17	67181681	67181681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABCA10	NM_080282	exon21	c.T2434C	p.F812L	.	.	94	5	107	1	.	93
ABCA12	26154	bcgsc.ca	37	2	215851307	215851307	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABCA12	NM_173076	exon28	c.T4122C	p.T1374T	.	.	105	5	109	0	.	99
ABCA6	23460	bcgsc.ca	37	17	67111580	67111580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABCA6	NM_080284	exon12	c.C1543T	p.H515Y	.	.	54	4	110	1	.	159
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44053584	44053584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABCG5	NM_022436	exon6	c.A711C	p.E237D	.	.	184	61	150	0	.	92
ABI3BP	25890	bcgsc.ca	37	3	100565231	100565231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABI3BP	NM_015429	exon18	c.A1582G	p.T528A	.	.	202	7	183	1	.	138
ACSL5	51703	bcgsc.ca	37	10	114187012	114187012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ACSL5	NM_016234	exon21	c.A2116G	p.I706V	.	.	95	6	101	0	.	154
ADAMTS10	81794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8661249	8661249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADAMTS10	NM_030957	exon10	c.G1132A	p.V378I	.	.	95	24	42	1	.	229
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79063584	79063584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADAMTS7	NM_014272	exon16	c.G2438A	p.G813D	.	.	208	39	142	0	.	226
ADCY9	115	bcgsc.ca	37	16	4164964	4164964	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADCY9	NM_001116	exon2	c.T480C	p.F160F	.	.	82	4	43	0	.	139
ADGB	79747	bcgsc.ca	37	6	147047332	147047332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_024694	exon19	c.C2351T	p.P784L	.	.	112	5	205	0	.	.
ADIPOR1	51094	bcgsc.ca	37	1	202915621	202915621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADIPOR1	NM_015999	exon4	c.A376G	p.K126E	.	.	214	8	161	0	.	90
AFF4	27125	bcgsc.ca	37	5	132219035	132219035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AFF4	NM_014423	exon20	c.A3361G	p.K1121E	.	.	54	4	83	0	.	229
AKAP12	9590	bcgsc.ca	37	6	151671043	151671043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AKAP12	NM_005100	exon4	c.A1517G	p.Q506R	.	.	66	4	67	0	.	293
AKD1	221264	bcgsc.ca	37	6	109837843	109837843	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AKD1	NM_001145128	exon30	c.T3636C	p.N1212N	.	.	86	4	194	0	.	91
ALMS1	7840	bcgsc.ca	37	2	73678861	73678861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ALMS1	NM_015120	exon8	c.T5204C	p.L1735P	.	.	65	5	108	0	.	142
ALX3	257	bcgsc.ca	37	1	110603430	110603430	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ALX3	NM_006492	exon4	c.C957T	p.D319D	.	.	65	4	63	1	.	90
AMTN	401138	hgsc.bcm.edu;broad.mit.edu	37	4	71396955	71396955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AMTN	NM_212557	exon8	c.557delC	p.T186fs	.	.	202	14	186	0	.	153
AMZ2P1	201283	bcgsc.ca	37	17	62969442	62969442	+	RNA	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	.	.	.	.	.	.	170	7	142	0	.	.
ANAPC4	29945	bcgsc.ca	37	4	25419788	25419788	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ANAPC4	NM_013367	exon29	c.T2211C	p.N737N	.	.	145	6	241	0	.	293
ANKHD1	54882	bcgsc.ca	37	5	139918556	139918556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ANKHD1	NM_017747	exon33	c.T7457C	p.L2486P	.	.	279	7	268	0	.	185
ANKRD17	26057	hgsc.bcm.edu	37	4	74043114	74043115	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ANKRD17	NM_198889	exon2	c.530_531insG	p.A177fs	.	.	129	10	158	0	.	234
ANKRD50	57182	broad.mit.edu	37	4	125590287	125590287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ANKRD50	NM_020337	exon4	c.C4145T	p.P1382L	.	.	374	8	584	1	.	90
ANLN	54443	broad.mit.edu	37	7	36456740	36456740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ANLN	NM_018685	exon9	c.T1574C	p.F525S	.	.	418	8	464	0	.	517
APC	324	bcgsc.ca	37	5	112178576	112178576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	APC	NM_001127510	exon17	c.T7285C	p.S2429P	.	.	83	4	111	1	.	12026
APOB	338	bcgsc.ca	37	2	21225692	21225692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	APOB	NM_000384	exon29	c.G12602T	p.R4201I	.	.	80	5	190	1	.	175
APOB	338	bcgsc.ca	37	2	21238370	21238370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	APOB	NM_000384	exon22	c.C3380T	p.P1127L	.	.	51	4	62	0	.	175
ARHGEF11	9826	bcgsc.ca	37	1	156906726	156906726	+	Silent	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ARHGEF11	NM_198236	exon40	c.G4512T	p.V1504V	.	.	183	7	129	0	.	233
ARID4B	51742	broad.mit.edu	37	1	235377281	235377281	+	Silent	SNP	C	C	T	rs113894806		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ARID4B	NM_016374	exon17	c.G1644A	p.E548E	.	.	403	7	363	1	C|0.500;T|0.500	228
ARL6IP5	10550	bcgsc.ca	37	3	69153618	69153618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ARL6IP5	NM_006407	exon3	c.T398C	p.M133T	.	.	75	4	153	0	.	91
ARMC3	219681	bcgsc.ca	37	10	23244828	23244828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ARMC3	NM_173081	exon4	c.G259A	p.A87T	.	.	103	5	121	0	.	90
ARRDC3	57561	bcgsc.ca	37	5	90670833	90670833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ARRDC3	NM_020801	exon5	c.A776G	p.K259R	.	.	168	6	230	0	.	136
ARVCF	421	ucsc.edu	37	22	19961718	19961718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	ARVCF,NS,carcinoma,+1	ARVCF	NM_001670	exon12	c.T2005C	p.S669P	.	.	51	6	38	2	.	91
ASH1L	55870	bcgsc.ca	37	1	155449275	155449275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ASH1L	NM_018489	exon3	c.A3386G	p.E1129G	.	.	141	8	143	1	.	234
ASXL1	171023	bcgsc.ca	37	20	31020735	31020735	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ASXL1	NM_015338	exon10	c.A1032G	p.E344E	.	.	111	5	75	0	.	2057
ATG2A	23130	bcgsc.ca	37	11	64665205	64665205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATG2A	NM_015104	exon36	c.T5005C	p.F1669L	.	.	183	6	112	0	.	69
ATG2B	55102	bcgsc.ca	37	14	96811016	96811016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATG2B	NM_018036	exon4	c.A556G	p.T186A	.	.	137	5	194	0	.	93
ATM	472	bcgsc.ca	37	11	108168102	108168102	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATM	NM_000051	exon33	c.A4998G	p.E1666E	.	.	55	4	109	1	.	3419
ATP2C2	9914	broad.mit.edu;bcgsc.ca	37	16	84482138	84482138	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATP2C2	NM_014861	exon17	c.1504-1G>T	.	.	.	150	7	127	0	.	91
ATRX	546	bcgsc.ca	37	X	76777815	76777815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATRX	NM_000489	exon32	c.A6901G	p.S2301G	.	.	223	6	262	0	.	248
ATRX	546	bcgsc.ca	37	X	76813091	76813091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATRX	NM_000489	exon30	c.A6530G	p.D2177G	.	.	178	7	377	0	.	248
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52437456	52437456	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BAP1	NM_004656	exon13	c.1705delG	p.V569fs	.	.	53	19	47	0	.	1032
BBX	56987	bcgsc.ca	37	3	107491817	107491817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BBX	NM_001142568	exon11	c.A1249G	p.I417V	.	.	211	6	215	0	.	94
BLNK	29760	bcgsc.ca	37	10	98006766	98006766	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BLNK	NM_001114094	exon2	c.A87G	p.E29E	.	.	102	6	252	1	.	92
BRCC3	79184	broad.mit.edu	37	X	154317604	154317604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BRCC3	NM_001242640	exon6	c.T473C	p.F158S	.	.	766	9	976	2	.	706
BRD8	10902	bcgsc.ca	37	5	137500052	137500052	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BRD8	NM_006696	exon14	c.A2001G	p.E667E	.	.	157	6	247	1	.	91
BRWD1	54014	bcgsc.ca	37	21	40610498	40610498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BRWD1	NM_018963	exon22	c.A2483G	p.E828G	.	.	146	5	188	0	.	94
BTRC	8945	bcgsc.ca	37	10	103294434	103294434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BTRC	NM_033637	exon10	c.A1114T	p.T372S	.	.	94	5	111	2	.	659
C10orf137	26098	bcgsc.ca	37	10	127424279	127424279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C10orf137	NM_001202438	exon13	c.A1564G	p.N522D	.	.	123	6	273	0	.	590
C11orf63	79864	bcgsc.ca	37	11	122828185	122828185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C11orf63	NM_024806	exon8	c.A2125G	p.I709V	.	.	211	6	247	1	.	93
C14orf159	80017	bcgsc.ca	37	14	91666206	91666206	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C14orf159	NM_001102368	exon11	c.T1401C	p.D467D	.	.	264	8	215	0	.	92
C18orf8	29919	hgsc.bcm.edu	37	18	21104108	21104109	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C18orf8	NM_013326	exon11	c.976_977insC	p.T326fs	.	.	167	7	155	0	.	91
C1orf141	400757	bcgsc.ca	37	1	67569025	67569025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C1orf141	NM_001276352	exon7	c.A455G	p.H152R	.	.	172	6	212	0	.	91
C1QTNF1	114897	bcgsc.ca	37	17	77043828	77043828	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C1QTNF1	NM_030968	exon4	c.C504T	p.D168D	.	.	154	7	94	1	.	91
C22orf24	25775	bcgsc.ca	37	22	32330392	32330392	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C22orf24	NM_015372	exon3	c.T195C	p.P65P	.	.	108	6	145	0	.	470
C2CD3	26005	bcgsc.ca	37	11	73804876	73804876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C2CD3	NM_015531	exon18	c.T3329C	p.F1110S	.	.	60	4	60	0	.	75
C2orf16	84226	bcgsc.ca	37	2	27799926	27799926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C2orf16	NM_032266	exon1	c.A487G	p.M163V	.	.	78	5	100	0	.	67
C3orf58	205428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	143704410	143704410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C3orf58	NM_173552	exon2	c.C683T	p.P228L	.	.	260	70	233	1	.	91
C4orf27	54969	bcgsc.ca	37	4	170674853	170674853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C4orf27	NM_017867	exon2	c.A182G	p.E61G	.	.	391	11	401	2	.	92
C6orf57	135154	broad.mit.edu;bcgsc.ca	37	6	71298409	71298409	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C6orf57	NM_145267	exon3	c.A309G	p.G103G	.	.	515	13	307	1	.	90
CACNA1S	779	bcgsc.ca	37	1	201041923	201041923	+	Silent	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CACNA1S	NM_000069	exon16	c.C2187A	p.V729V	.	.	119	5	72	0	.	94
CACNA2D1	781	bcgsc.ca	37	7	81689775	81689775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CACNA2D1	NM_000722	exon10	c.T848C	p.L283P	.	.	100	5	100	2	.	96
CAPN3	825	broad.mit.edu;bcgsc.ca	37	15	42691717	42691717	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CAPN3	NM_000070	exon10	c.T1221C	p.H407H	.	.	219	7	188	1	.	514
CASS4	57091	bcgsc.ca	37	20	55034584	55034584	+	RNA	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CASS4	.	.	.	.	.	.	55	14	58	0	.	25
CAT	847	bcgsc.ca	37	11	34470909	34470909	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CAT	NM_001752	exon2	c.A237G	p.A79A	.	.	171	6	198	0	.	229
CBS	875	hgsc.bcm.edu	37	21	44492127	44492128	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CBS	NM_000071	exon3	c.177_178insC	p.P59fs	.	.	190	12	123	0	.	90
CC2D2A	57545	bcgsc.ca	37	4	15597760	15597760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CC2D2A	NM_001080522	exon35	c.T4367C	p.V1456A	.	.	134	6	166	0	.	25
CCDC104	112942	hgsc.bcm.edu;bcgsc.ca	37	2	55772122	55772124	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC104	NM_080667	exon10	c.1007_1009del	p.336_337del	.	.	264	59	446	0	.	91
CCDC27	148870	bcgsc.ca	37	1	3672023	3672023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC27	NM_152492	exon3	c.T445C	p.S149P	.	.	106	5	84	0	.	91
CCDC42	146849	bcgsc.ca	37	17	8633481	8633481	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC42	NM_144681	exon7	c.G918A	p.V306V	.	.	93	7	90	0	.	91
CCDC63	160762	bcgsc.ca	37	12	111319071	111319071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC63	NM_152591	exon7	c.A824G	p.E275G	.	.	59	4	73	0	.	134
CCDC67	159989	bcgsc.ca	37	11	93141537	93141537	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC67	NM_181645	exon12	c.A1467G	p.E489E	.	.	279	8	332	1	.	91
CCL15	6359	bcgsc.ca	37	17	34324858	34324858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCL15	NM_032965	exon4	c.C287T	p.P96L	.	.	150	5	107	0	.	91
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158325699	158325699	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CD1E	NM_001042584	exon4	c.C708T	p.Y236Y	.	.	320	14	273	0	.	93
CDAN1	146059	bcgsc.ca	37	15	43028174	43028174	+	Silent	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDAN1	NM_138477	exon3	c.C672A	p.P224P	.	.	273	9	198	4	.	92
CDC40	51362	bcgsc.ca	37	6	110530407	110530407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDC40	NM_015891	exon5	c.A611G	p.D204G	.	.	158	6	220	0	.	90
CDC42BPA	8476	bcgsc.ca	37	1	227333268	227333268	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDC42BPA	NM_003607	exon8	c.A1065G	p.E355E	.	.	184	6	192	1	.	549
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68856129	68856129	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDH1	NM_004360	exon12	c.1936+1G>A	.	.	.	89	17	82	0	.	3377
CDH26	60437	bcgsc.ca	37	20	58564196	58564196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDH26	NM_177980	exon9	c.A1261G	p.M421V	.	.	65	4	33	0	.	93
CDHR1	92211	bcgsc.ca	37	10	85970836	85970836	+	Missense_Mutation	SNP	A	A	G	rs146934914	alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDHR1	NM_001171971	exon13	c.A1400G	p.D467G	.	.	81	4	90	0	A|1.000;T|0.000	91
CDHR5	53841	hgsc.bcm.edu	37	11	618063	618064	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDHR5	NM_021924	exon14	c.2009_2010insG	p.A670fs	.	.	95	17	68	0	.	90
CDK12	51755	broad.mit.edu;bcgsc.ca	37	17	37650822	37650822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDK12	NM_016507	exon5	c.A2294G	p.E765G	.	.	260	13	197	4	.	1055
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123177407	123177407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDK5RAP2	NM_018249	exon28	c.G4208A	p.R1403Q	.	.	280	32	209	0	.	229
CENPF	1063	bcgsc.ca	37	1	214815548	214815548	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CENPF	NM_016343	exon12	c.T3867C	p.L1289L	.	.	183	7	265	0	.	567
CEP350	9857	bcgsc.ca	37	1	179993656	179993656	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CEP350	NM_014810	exon14	c.T3489C	p.A1163A	.	.	250	8	229	1	.	26
CGN	57530	bcgsc.ca	37	1	151508109	151508109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CGN	NM_020770	exon17	c.A3028G	p.R1010G	.	.	125	6	86	0	.	93
CHD2	1106	bcgsc.ca	37	15	93552379	93552379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHD2	NM_001271	exon35	c.A4418G	p.K1473R	.	.	156	6	157	0	.	229
CHPF2	54480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150934562	150934562	+	Missense_Mutation	SNP	G	G	A	rs139379425	byfrequency;alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHPF2	NM_019015	exon4	c.G1114A	p.V372M	.	.	236	62	97	0	G|1.000;T|0.000	91
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175624066	175624066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHRNA1	NM_001039523	exon3	c.T227A	p.L76Q	.	.	247	78	216	0	.	518
CHRNB3	1142	bcgsc.ca	37	8	42585845	42585845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHRNB3	NM_000749	exon4	c.A358G	p.N120D	.	.	123	5	104	0	.	91
CHRND	1144	bcgsc.ca	37	2	233393286	233393286	+	Silent	SNP	A	A	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHRND	NM_000751	exon5	c.A429C	p.P143P	.	.	306	98	318	70	.	155
CHSY1	22856	hgsc.bcm.edu	37	15	101717654	101717655	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHSY1	NM_014918	exon3	c.2348_2349insG	p.E783fs	.	.	301	27	240	0	.	90
CLASP1	23332	bcgsc.ca	37	2	122168546	122168546	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CLASP1	NM_001142274	exon24	c.2213-1G>T	.	.	.	69	5	87	1	.	91
CLIP1	6249	bcgsc.ca	37	12	122817692	122817692	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CLIP1	NM_002956	exon15	c.2678-2A>T	.	.	.	200	7	238	1	.	155
CLTCL1	8218	broad.mit.edu	37	22	19171096	19171096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CLTCL1	NM_007098	exon30	c.G4634A	p.R1545Q	.	.	84	6	91	0	.	230
CMKLR1	1240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108686473	108686473	+	Silent	SNP	G	G	A	rs201022995		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CMKLR1	NM_001142344	exon3	c.C267T	p.N89N	.	.	127	37	209	0	G|0.999;A|0.001	523
CNNM1	26507	bcgsc.ca	37	10	101120605	101120605	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CNNM1	NM_020348	exon3	c.A1731G	p.K577K	.	.	56	4	78	0	.	68
CNTN3	5067	bcgsc.ca	37	3	74411118	74411118	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CNTN3	NM_020872	exon10	c.G1287A	p.L429L	.	.	132	5	226	2	.	137
COG6	57511	bcgsc.ca	37	13	40251695	40251695	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COG6	NM_001145079	exon5	c.A519G	p.T173T	.	.	69	4	143	0	.	227
COG6	57511	bcgsc.ca	37	13	40261662	40261662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COG6	NM_001145079	exon9	c.A811G	p.T271A	.	.	108	6	169	2	.	227
COL11A1	1301	bcgsc.ca	37	1	103343587	103343587	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COL11A1	NM_080629	exon67	c.T5445C	p.C1815C	.	.	211	6	335	0	.	586
COL12A1	1303	hgsc.bcm.edu	37	6	75806972	75806973	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COL12A1	NM_004370	exon59	c.8574_8575insC	p.P2858fs	.	.	171	20	137	0	.	142
COL1A1	1277	bcgsc.ca	37	17	48278822	48278822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COL1A1	NM_000088	exon1	c.T53C	p.L18P	.	.	131	23	55	8	.	986
COL27A1	85301	bcgsc.ca	37	9	116982097	116982097	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COL27A1	NM_032888	exon13	c.A2394G	p.R798R	.	.	103	5	75	0	.	94
COL7A1	1294	bcgsc.ca	37	3	48629442	48629442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COL7A1	NM_000094	exon10	c.T1246C	p.S416P	.	.	180	6	156	0	.	160
COMT	1312	bcgsc.ca	37	22	19950320	19950320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	COMT	NM_000754	exon3	c.A271G	p.N91D	.	.	59	4	47	0	.	91
CORO1A	11151	bcgsc.ca	37	16	30198195	30198195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CORO1A	NM_001193333	exon5	c.T380C	p.L127P	.	.	56	4	61	0	.	226
CPEB3	22849	bcgsc.ca	37	10	93902836	93902836	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CPEB3	NM_014912	exon6	c.T1403A	p.V468E	.	.	77	4	72	0	.	90
CPT1C	126129	bcgsc.ca	37	19	50208371	50208371	+	Silent	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CPT1C	NM_001199752	exon9	c.G879T	p.P293P	.	.	62	4	51	1	.	92
CREBBP	1387	bcgsc.ca	37	16	3807897	3807897	+	Silent	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CREBBP	NM_004380	exon18	c.C3522A	p.V1174V	.	.	139	8	139	0	.	1807
CREBBP	1387	broad.mit.edu	37	16	3778577	3778577	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CREBBP	NM_004380	exon31	c.G6471A	p.Q2157Q	.	.	76	4	55	0	.	1807
CRSP8P	0	bcgsc.ca	37	5	79647630	79647630	+	RNA	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	.	.	.	.	.	.	203	10	140	1	.	.
CRYBG3	131544	bcgsc.ca	37	3	97596315	97596315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CRYBG3	NM_153605	exon4	c.A6277G	p.S2093G	.	.	130	5	192	0	.	68
CTNNA2	1496	bcgsc.ca	37	2	80096971	80096971	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CTNNA2	NM_001164883	exon5	c.T495C	p.N165N	.	.	68	4	64	0	.	368
CTSE	1510	bcgsc.ca	37	1	206317646	206317646	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CTSE	NM_001910	exon1	c.68+2T>C	.	.	.	83	5	85	0	.	91
CUBN	8029	bcgsc.ca	37	10	16882901	16882901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CUBN	NM_001081	exon61	c.C9809T	p.T3270I	.	.	222	6	295	1	.	166
CUL3	8452	bcgsc.ca	37	2	225360607	225360607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CUL3	NM_001257198	exon13	c.C1802T	p.S601F	.	.	213	6	258	0	.	229
CUL4A	8451	bcgsc.ca	37	13	113883778	113883778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CUL4A	NM_001008895	exon5	c.T457C	p.F153L	.	.	82	4	86	0	.	651
CYFIP2	26999	bcgsc.ca	37	5	156787324	156787324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CYFIP2	NM_001037332	exon25	c.T2852C	p.L951P	.	.	115	5	114	0	.	22
CYLC1	1538	bcgsc.ca	37	X	83128174	83128174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CYLC1	NM_021118	exon4	c.A458G	p.K153R	.	.	155	5	431	0	.	112
CYP2B6	1555	bcgsc.ca	37	19	41518698	41518698	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CYP2B6	NM_000767	exon8	c.A1272G	p.E424E	.	.	130	5	89	0	.	92
CYP4A11	1579	bcgsc.ca	37	1	47400214	47400214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CYP4A11	NM_000778	exon7	c.A808G	p.R270G	.	.	327	7	264	1	.	94
DAP	1611	bcgsc.ca	37	5	10683674	10683674	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DAP	NM_004394	exon3	c.A162G	p.K54K	.	.	196	6	97	0	.	90
DAZAP1	26528	bcgsc.ca	37	19	1421148	1421148	+	Missense_Mutation	SNP	A	A	G	rs113263508		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DAZAP1	NM_018959	exon5	c.A305G	p.Q102R	.	.	125	5	69	0	A|0.500;G|0.500	153
DCDC5	100506627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30937205	30937205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DCDC5	NM_020869	exon8	c.A827G	p.Y276C	.	.	294	80	318	1	.	23
DCUN1D1	54165	bcgsc.ca	37	3	182679051	182679051	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DCUN1D1	NM_020640	exon4	c.T483C	p.T161T	.	.	328	10	349	0	.	91
DEK	7913	bcgsc.ca	37	6	18264183	18264183	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DEK	NM_003472	exon2	c.A36G	p.G12G	.	.	121	10	64	0	.	658
DHX57	90957	bcgsc.ca	37	2	39025579	39025579	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DHX57	NM_198963	exon24	c.T4023C	p.A1341A	.	.	200	6	191	1	.	228
DHX9	1660	bcgsc.ca	37	1	182850440	182850440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DHX9	NM_001357	exon23	c.T2666C	p.F889S	.	.	275	8	215	0	.	92
DIEXF	27042	bcgsc.ca	37	1	210017016	210017016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DIEXF	NM_014388	exon11	c.A2002G	p.T668A	.	.	59	6	121	0	.	91
DIS3L2	129563	bcgsc.ca	37	2	232880336	232880336	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DIS3L2	NM_001257282	exon3	c.C165T	p.S55S	.	.	73	4	99	0	.	136
DMBT1	1755	broad.mit.edu;bcgsc.ca	37	10	124399625	124399625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DMBT1	NM_007329	exon52	c.A6625G	p.R2209G	.	.	125	5	152	2	.	494
DMGDH	29958	bcgsc.ca	37	5	78338228	78338228	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DMGDH	NM_013391	exon7	c.T1071C	p.P357P	.	.	260	8	303	0	.	94
DNAH10	196385	bcgsc.ca	37	12	124305255	124305255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DNAH10	NM_207437	exon23	c.A3775G	p.K1259E	.	.	140	6	139	0	.	95
DNAH1	25981	bcgsc.ca	37	3	52384522	52384522	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DNAH1	NM_015512	exon16	c.2647-2A>G	.	.	.	182	6	169	1	.	67
DNAH17	8632	broad.mit.edu	37	17	76528754	76528754	+	Missense_Mutation	SNP	T	T	C	rs201052772		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DNAH17	NM_173628	exon20	c.A2924G	p.N975S	.	.	280	9	174	3	.	142
DNAJB7	150353	bcgsc.ca	37	22	41257546	41257546	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DNAJB7	NM_145174	exon1	c.T453C	p.S151S	.	.	87	4	103	0	.	227
DNAJC25	548645	bcgsc.ca	37	9	114415441	114415441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DNAJC25	NM_001015882	exon4	c.A1022G	p.K341R	.	.	124	7	154	0	.	22
DNTT	1791	bcgsc.ca	37	10	98092287	98092287	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DNTT	NM_001017520	exon9	c.T1293C	p.R431R	.	.	121	8	257	1	.	228
DOCK7	85440	bcgsc.ca	37	1	63021554	63021554	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DOCK7	NM_001271999	exon21	c.A2538G	p.A846A	.	.	225	7	182	1	.	92
DPYD	1806	bcgsc.ca	37	1	98058784	98058784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DPYD	NM_000110	exon10	c.T1118C	p.V373A	.	.	47	4	65	0	.	278
EFCAB1	79645	bcgsc.ca	37	8	49643176	49643176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	EFCAB1	NM_024593	exon3	c.A242G	p.D81G	.	.	118	5	142	1	.	90
EFCC1	79825	hgsc.bcm.edu	37	3	128758638	128758639	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_024768	exon8	c.1744_1745insC	p.A582fs	.	.	169	12	151	0	.	.
EMD	2010	bcgsc.ca	37	X	153609134	153609134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	EMD	NM_000117	exon5	c.T421C	p.S141P	.	.	191	7	190	2	.	130
ENTPD6	955	bcgsc.ca	37	20	25195538	25195538	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ENTPD6	NM_001247	exon6	c.A633G	p.V211V	.	.	107	6	94	0	.	90
EPB41L2	2037	bcgsc.ca	37	6	131216117	131216117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	EPB41L2	NM_001135554	exon9	c.G1379A	p.R460K	.	.	70	4	120	0	.	91
EPN1	29924	hgsc.bcm.edu	37	19	56206198	56206199	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001130071	exon10	c.1629_1630del	p.543_544del	.	.	106	11	71	0	.	.
EPS8	2059	bcgsc.ca	37	12	15811030	15811030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	EPS8	NM_004447	exon12	c.T1084C	p.F362L	.	.	65	4	74	1	.	94
ERCC1	2067	bcgsc.ca	37	19	45920083	45920083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ERCC1	NM_001983	exon6	c.T598C	p.W200R	.	.	75	4	71	0	.	659
ETS1	2113	bcgsc.ca	37	11	128333410	128333410	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ETS1	NM_001143820	exon9	c.A1236G	p.P412P	.	.	118	6	116	0	.	1270
EXOC5	10640	bcgsc.ca	37	14	57675376	57675376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	EXOC5	NM_006544	exon18	c.A2078G	p.Q693R	.	.	124	6	238	0	.	137
EYS	346007	bcgsc.ca	37	6	64431071	64431071	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	EYS	NM_001142800	exon43	c.T8856C	p.T2952T	.	.	84	4	116	0	.	660
FAM111A	63901	broad.mit.edu;bcgsc.ca	37	11	58916308	58916308	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM111A	.	.	.	.	.	.	132	21	132	1	.	93
FAM134C	162427	broad.mit.edu	37	17	40738807	40738807	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM134C	NM_178126	exon4	c.T480C	p.L160L	.	.	457	7	369	0	.	70
FAM169A	26049	bcgsc.ca	37	5	74101022	74101022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM169A	NM_015566	exon7	c.C758T	p.P253L	.	.	157	5	127	0	.	22
FAM170A	340069	bcgsc.ca	37	5	118969907	118969907	+	Missense_Mutation	SNP	A	A	G	rs150699833		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM170A	NM_182761	exon3	c.A464G	p.Q155R	.	.	152	6	113	1	A|0.998;G|0.002	91
FAM194B	220081	bcgsc.ca	37	13	46154797	46154797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM194B	NM_182542	exon6	c.A860G	p.K287R	.	.	207	6	345	0	.	68
FAM3A	60343	broad.mit.edu	37	X	153735184	153735184	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM3A	NM_001171132	exon10	c.G651A	p.L217L	.	.	309	7	225	3	.	130
FAM53C	51307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137681062	137681062	+	Missense_Mutation	SNP	C	C	T	rs145095111		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM53C	NM_001135647	exon4	c.C685T	p.R229C	.	.	49	14	29	0	C|1.000;T|0.000	91
FAM73A	374986	bcgsc.ca	37	1	78309075	78309075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM73A	NM_001270384	exon8	c.T979C	p.F327L	.	.	65	4	104	0	.	91
FBF1	85302	broad.mit.edu;bcgsc.ca	37	17	73919686	73919686	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FBF1	NM_001080542	exon13	c.A960G	p.G320G	.	.	156	12	112	3	.	205
FBXO10	26267	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37518350	37518350	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FBXO10	NM_012166	exon9	c.G2286A	p.V762V	.	.	331	29	207	1	.	637
FBXW8	26259	bcgsc.ca	37	12	117426664	117426664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FBXW8	NM_153348	exon7	c.A1229G	p.E410G	.	.	73	5	74	1	.	229
FGD6	55785	bcgsc.ca	37	12	95604181	95604181	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FGD6	NM_018351	exon2	c.A879G	p.S293S	.	.	187	6	177	0	.	137
FGFR1OP	11116	bcgsc.ca	37	6	167435905	167435905	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FGFR1OP	NM_007045	exon8	c.T588C	p.N196N	.	.	51	5	58	0	.	683
FNDC1	84624	bcgsc.ca	37	6	159657258	159657258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FNDC1	NM_032532	exon12	c.A3979G	p.R1327G	.	.	73	5	55	0	.	138
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FRG1B	.	.	.	.	.	.	709	31	917	28	.	22
GAREM	64762	bcgsc.ca	37	18	29848521	29848521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001242409	exon6	c.G1944T	p.R648S	.	.	312	8	285	2	.	.
GDAP2	54834	bcgsc.ca	37	1	118426146	118426146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GDAP2	NM_017686	exon11	c.A1211G	p.D404G	.	.	111	5	188	3	.	92
GFI1B	8328	bcgsc.ca	37	9	135864521	135864521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GFI1B	NM_004188	exon5	c.A584G	p.D195G	.	.	139	8	88	0	.	154
GLB1L3	112937	bcgsc.ca	37	11	134147636	134147636	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GLB1L3	NM_001080407	exon3	c.A192G	p.R64R	.	.	142	5	110	0	.	69
GLG1	2734	bcgsc.ca	37	16	74537604	74537604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GLG1	NM_001145667	exon4	c.T599C	p.M200T	.	.	158	5	220	0	.	136
GLI4	2738	bcgsc.ca	37	8	144358533	144358533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GLI4	NM_138465	exon4	c.C690G	p.H230Q	.	.	98	12	63	4	.	91
GLMN	11146	bcgsc.ca	37	1	92733680	92733680	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GLMN	NM_053274	exon10	c.T990C	p.S330S	.	.	169	6	223	0	.	227
GNAT3	346562	bcgsc.ca	37	7	80091902	80091902	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GNAT3	NM_001102386	exon6	c.T636C	p.I212I	.	.	232	7	299	0	.	23
GOLGA4	2803	bcgsc.ca	37	3	37365498	37365502	+	Frame_Shift_Del	DEL	TTCTG	TTCTG	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	TTCTG	TTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GOLGA4	NM_001172713	exon15	c.2187_2191del	p.729_731del	.	.	88	3	169	0	.	93
GOPC	57120	bcgsc.ca	37	6	117900191	117900191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GOPC	NM_001017408	exon2	c.A322G	p.T108A	.	.	77	5	172	0	.	676
GPLD1	2822	bcgsc.ca	37	6	24456802	24456802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPLD1	NM_001503	exon13	c.T1072C	p.S358P	.	.	133	5	120	0	.	228
GPR112	139378	bcgsc.ca	37	X	135432168	135432168	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR112	NM_153834	exon6	c.T6303C	p.I2101I	.	.	84	5	309	1	.	183
GPR116	221395	bcgsc.ca	37	6	46851385	46851385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR116	NM_015234	exon6	c.A523G	p.R175G	.	.	117	5	169	3	.	91
GPR125	166647	broad.mit.edu;bcgsc.ca	37	4	22389481	22389481	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR125	NM_145290	exon19	c.G3813A	p.V1271V	.	.	123	6	240	1	.	91
GPR137B	7107	broad.mit.edu	37	1	236343317	236343317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR137B	NM_003272	exon4	c.G826A	p.V276I	.	.	252	7	208	0	.	90
GPR18	2841	bcgsc.ca	37	13	99907822	99907822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR18	NM_001098200	exon2	c.T305C	p.V102A	.	.	84	6	147	0	.	90
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41586732	41586732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR82	NM_080817	exon3	c.T453A	p.F151L	.	.	100	13	182	0	.	110
GPR98	84059	bcgsc.ca	37	5	90020992	90020992	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR98	NM_032119	exon47	c.A9996G	p.E3332E	.	.	330	8	398	0	.	103
GPSM1	26086	bcgsc.ca	37	9	139235607	139235607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPSM1	NM_015597	exon9	c.C1364T	p.A455V	.	.	55	4	59	0	.	90
GRIN2B	2904	bcgsc.ca	37	12	13716014	13716014	+	Silent	SNP	A	A	G	rs200783471		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GRIN2B	NM_000834	exon13	c.T4158C	p.P1386P	.	.	132	6	86	2	.	231
GSTCD	79807	bcgsc.ca	37	4	106650579	106650579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GSTCD	NM_001031720	exon5	c.T1163C	p.V388A	.	.	178	8	259	1	.	92
GTF3C5	9328	bcgsc.ca	37	9	135917652	135917652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GTF3C5	NM_012087	exon2	c.T332C	p.M111T	.	.	74	4	80	0	.	90
GYPA	2993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145039884	145039884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GYPA	NM_002099	exon4	c.A254T	p.H85L	.	.	370	87	722	0	.	514
GZMK	3003	hgsc.bcm.edu	37	5	54320547	54320548	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GZMK	NM_002104	exon2	c.124_125insC	p.A42fs	.	.	173	10	159	0	.	90
HEMGN	55363	hgsc.bcm.edu	37	9	100693389	100693389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HEMGN	NM_197978	exon3	c.A288G	p.I96M	.	.	318	21	365	0	.	91
HEPHL1	341208	bcgsc.ca	37	11	93836149	93836149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HEPHL1	NM_001098672	exon15	c.T2645C	p.I882T	.	.	129	5	119	0	.	71
HERC3	8916	bcgsc.ca	37	4	89527180	89527180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HERC3	NM_014606	exon3	c.A206G	p.E69G	.	.	65	4	56	0	.	660
HKDC1	80201	bcgsc.ca	37	10	71018612	71018612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HKDC1	NM_025130	exon15	c.A2113G	p.N705D	.	.	119	5	157	0	.	95
HLA-L	3139	broad.mit.edu	37	6	30231920	30231920	+	RNA	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	.	.	.	.	.	.	56	13	64	0	.	.
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	.	.	266	17	440	9	.	68
HOXA10	3206	hgsc.bcm.edu	37	7	27213355	27213356	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HOXA10	NM_018951	exon1	c.571_572insC	p.F191fs	.	.	97	10	17	0	.	68
HSPB2	3316	bcgsc.ca	37	11	111784314	111784314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HSPB2	NM_001541	exon2	c.C244T	p.H82Y	.	.	145	5	83	0	.	659
HTR6	3362	broad.mit.edu;mdanderson.org	37	1	20005787	20005787	+	Missense_Mutation	SNP	G	G	A	rs200009000		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HTR6	NM_000871	exon3	c.G1249A	p.A417T	.	.	33	13	26	0	.	91
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394T	p.R132C	.	.	294	86	267	0	.	23522
IFI44L	10964	bcgsc.ca	37	1	79093946	79093946	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	IFI44L	NM_006820	exon2	c.T346A	p.L116I	.	.	65	4	149	0	.	90
IL17F	112744	bcgsc.ca	37	6	52101864	52101864	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	IL17F	NM_052872	exon3	c.T357C	p.N119N	.	.	87	4	92	0	.	91
INCENP	3619	bcgsc.ca	37	11	61896344	61896344	+	Silent	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	INCENP	NM_001040694	exon3	c.C243A	p.P81P	.	.	64	5	46	0	.	227
INTS6	26512	bcgsc.ca	37	13	51961554	51961554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	INTS6	NM_012141	exon7	c.T862C	p.S288P	.	.	77	5	124	1	.	227
IPO5	3843	bcgsc.ca	37	13	98664567	98664567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	IPO5	NM_002271	exon21	c.T2177C	p.V726A	.	.	78	4	171	0	.	228
ISOC1	51015	bcgsc.ca	37	5	128440765	128440765	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ISOC1	NM_016048	exon2	c.A426G	p.R142R	.	.	356	8	525	2	.	90
ITIH3	3699	bcgsc.ca	37	3	52833919	52833919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ITIH3	NM_002217	exon9	c.A1057G	p.S353G	.	.	57	5	52	0	.	93
ITPR3	3710	bcgsc.ca	37	6	33646616	33646616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ITPR3	NM_002224	exon30	c.G3972T	p.E1324D	.	.	78	4	51	0	.	1085
KANK1	23189	bcgsc.ca	37	9	712133	712133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KANK1	NM_001256876	exon7	c.A1367G	p.E456G	.	.	61	4	71	0	.	517
KANK1	23189	bcgsc.ca	37	9	712989	712989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KANK1	NM_001256876	exon7	c.G2223T	p.L741F	.	.	201	8	176	2	.	517
KANK1	23189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	738429	738429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KANK1	NM_001256876	exon12	c.G3478A	p.G1160S	.	.	255	80	219	1	.	517
KAT2A	2648	hgsc.bcm.edu	37	17	40272817	40272818	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KAT2A	NM_021078	exon2	c.370_371insG	p.K124fs	.	.	161	29	106	0	.	523
KCNH4	23415	bcgsc.ca	37	17	40321600	40321600	+	Silent	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KCNH4	NM_012285	exon9	c.C1485A	p.L495L	.	.	96	6	57	0	.	153
KCNU1	157855	bcgsc.ca	37	8	36703149	36703149	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KCNU1	NM_001031836	exon17	c.A1755G	p.L585L	.	.	135	6	185	0	.	23
KDELC1	79070	bcgsc.ca	37	13	103449345	103449345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KDELC1	NM_024089	exon2	c.C197T	p.P66L	.	.	139	7	190	0	.	91
KIAA0226	9711	bcgsc.ca	37	3	197426101	197426101	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KIAA0226	NM_001145642	exon8	c.A1083G	p.G361G	.	.	137	25	104	10	.	22
KIAA0232	9778	bcgsc.ca	37	4	6864721	6864721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KIAA0232	NM_014743	exon7	c.T2612C	p.L871P	.	.	137	5	181	1	.	92
KIF2A	3796	bcgsc.ca	37	5	61643883	61643883	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KIF2A	NM_001243953	exon3	c.G168A	p.L56L	.	.	238	6	249	0	.	228
KLRG2	346689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139164446	139164446	+	Missense_Mutation	SNP	G	G	A	rs138023732	byfrequency	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KLRG2	NM_198508	exon3	c.C932T	p.A311V	.	.	54	9	35	0	G|1.000;A|0.000	90
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152732812	152732812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KPRP	NM_001025231	exon2	c.C748T	p.R250W	.	.	82	26	58	0	.	95
KRTAP10-11	386678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46066650	46066650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KRTAP10-11	NM_198692	exon1	c.C275G	p.S92C	.	.	247	23	191	0	.	91
KRTAP5-11	440051	hgsc.bcm.edu	37	11	71293866	71293867	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KRTAP5-11	NM_001005405	exon1	c.18_19insG	p.C6fs	.	.	294	17	224	0	.	90
LAMA2	3908	bcgsc.ca	37	6	129785547	129785547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LAMA2	NM_000426	exon50	c.A7105G	p.R2369G	.	.	87	5	334	2	.	162
LATS1	9113	bcgsc.ca	37	6	149997752	149997752	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LATS1	NM_004690	exon6	c.T2715C	p.C905C	.	.	85	5	112	0	.	992
LIPF	8513	bcgsc.ca	37	10	90433480	90433480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LIPF	NM_001198829	exon8	c.A835G	p.N279D	.	.	128	5	174	1	.	90
LMNB1	4001	bcgsc.ca	37	5	126154632	126154632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LMNB1	NM_005573	exon6	c.A958G	p.R320G	.	.	217	6	223	0	.	226
LOC100132247	0	broad.mit.edu	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001135865	exon7	c.G1593T	p.K531N	.	.	83	6	82	3	.	.
LOXHD1	125336	bcgsc.ca	37	18	44198160	44198160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_144612	exon5	c.A605G	p.D202G	.	.	166	6	161	0	.	.
LPIN2	9663	bcgsc.ca	37	18	2920389	2920389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LPIN2	NM_014646	exon20	c.A2593G	p.S865G	.	.	75	4	73	1	.	227
LRP1B	53353	bcgsc.ca	37	2	141208142	141208142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRP1B	NM_018557	exon63	c.A10052G	p.D3351G	.	.	60	4	106	0	.	311
LRRK2	120892	bcgsc.ca	37	12	40687444	40687444	+	Silent	SNP	G	G	A	rs72547970		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRRK2	NM_198578	exon21	c.G2787A	p.L929L	.	.	76	4	156	0	G|0.992;A|0.008	533
LRRK2	120892	bcgsc.ca	37	12	40692115	40692115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRRK2	NM_198578	exon24	c.A3167G	p.K1056R	.	.	195	6	336	0	.	533
LRRN2	10446	ucsc.edu;bcgsc.ca	37	1	204587323	204587323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRRN2	NM_006338	exon3	c.G1798A	p.A600T	.	.	51	5	29	0	.	514
LRRN3	54674	bcgsc.ca	37	7	110763907	110763907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRRN3	NM_018334	exon2	c.T1079C	p.L360P	.	.	129	5	152	0	.	154
LRTOMT	220074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71819726	71819726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRTOMT	NM_001145308	exon7	c.C631A	p.L211M	.	.	36	9	28	0	.	68
LYNX1	66004	bcgsc.ca	37	8	143857065	143857065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LYNX1	NM_177477	exon3	c.T100C	p.F34L	.	.	159	6	75	0	.	90
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39907974	39907974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MACF1	NM_012090	exon73	c.G12753T	p.E4251D	.	.	123	39	128	0	.	165
MAP3K4	4216	bcgsc.ca	37	6	161529825	161529825	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAP3K4	NM_005922	exon22	c.A4170G	p.E1390E	.	.	174	6	200	0	.	548
MAP3K7	6885	bcgsc.ca	37	6	91246066	91246066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAP3K7	NM_145331	exon13	c.A1346G	p.E449G	.	.	75	4	160	0	.	980
MAPKAP1	79109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128230302	128230302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAPKAP1	NM_001006617	exon10	c.A1294G	p.I432V	.	.	394	30	384	0	.	678
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42110257	42110257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAPKBP1	NM_001128608	exon18	c.1973delA	p.Q658fs	.	.	193	45	148	0	.	589
MCM6	4175	bcgsc.ca	37	2	136623811	136623811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MCM6	NM_005915	exon6	c.T818C	p.V273A	.	.	206	6	154	1	.	227
MCM9	254394	bcgsc.ca	37	6	119245158	119245158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MCM9	NM_017696	exon2	c.T439C	p.C147R	.	.	133	5	195	2	.	515
MDM1	56890	bcgsc.ca	37	12	68724944	68724944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MDM1	NM_020128	exon2	c.T76C	p.C26R	.	.	161	6	102	0	.	95
MED23	9439	bcgsc.ca	37	6	131929094	131929094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MED23	NM_015979	exon13	c.T1213C	p.F405L	.	.	54	4	163	0	.	24
MFSD8	256471	bcgsc.ca	37	4	128842838	128842838	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MFSD8	NM_152778	exon12	c.A1191G	p.R397R	.	.	200	7	217	0	.	92
MGAT5B	146664	broad.mit.edu;bcgsc.ca	37	17	74901327	74901327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MGAT5B	NM_198955	exon6	c.A800G	p.K267R	.	.	196	14	141	2	.	93
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129901092	129901092	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MKI67	NM_002417	exon13	c.A9012T	p.G3004G	.	.	73	32	107	0	.	519
MKI67IP	84365	ucsc.edu	37	2	122485225	122485225	+	RNA	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MKI67IP	.	.	.	.	.	.	153	52	193	1	.	90
MLLT4	4301	bcgsc.ca	37	6	168325693	168325693	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MLLT4	NM_001040000	exon22	c.T3000C	p.P1000P	.	.	59	5	83	0	.	685
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	89180036	89180036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MMP16	NM_005941	exon4	c.G571A	p.G191S	.	.	135	33	188	0	.	231
MOB2	81532	bcgsc.ca	37	11	1491662	1491662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001172223	exon5	c.T547C	p.F183L	.	.	138	6	126	0	.	.
MON2	23041	bcgsc.ca	37	12	62936965	62936965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MON2	NM_015026	exon20	c.G2453A	p.G818D	.	.	152	5	185	0	.	514
MORC2	22880	bcgsc.ca	37	22	31322819	31322819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MORC2	NM_014941	exon27	c.A2884G	p.I962V	.	.	207	6	168	0	.	92
MPP5	64398	bcgsc.ca	37	14	67745976	67745976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MPP5	NM_022474	exon3	c.A89G	p.Q30R	.	.	202	7	263	1	.	91
MROH2B	133558	bcgsc.ca	37	5	41018034	41018034	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_173489	exon28	c.T2802C	p.L934L	.	.	135	6	125	0	.	.
MRPL30	51263	bcgsc.ca	37	2	99812127	99812127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MRPL30	NM_145212	exon6	c.T445C	p.W149R	.	.	227	7	241	0	.	91
MTERFD2	130916	bcgsc.ca	37	2	242038844	242038844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MTERFD2	NM_182501	exon2	c.T487C	p.S163P	.	.	95	6	60	0	.	91
MTUS2	23281	bcgsc.ca	37	13	29600371	29600371	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MTUS2	NM_001033602	exon1	c.T1566C	p.L522L	.	.	104	6	140	0	.	218
MUC16	94025	bcgsc.ca	37	19	9061873	9061873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MUC16	NM_024690	exon3	c.T25573C	p.S8525P	.	.	50	4	147	0	.	566
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9083584	9083584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MUC16	NM_024690	exon1	c.T8231C	p.I2744T	.	.	45	4	142	0	.	566
MUC17	140453	bcgsc.ca	37	7	100679799	100679799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MUC17	NM_001040105	exon3	c.C5102T	p.P1701L	.	.	107	26	109	10	.	95
MUM1L1	139221	bcgsc.ca	37	X	105449968	105449968	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MUM1L1	NM_152423	exon5	c.A543G	p.E181E	.	.	93	4	131	1	.	133
MYB	4602	bcgsc.ca	37	6	135510936	135510936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MYB	NM_001161660	exon4	c.C221T	p.T74I	.	.	47	4	68	0	.	838
MYO7A	4647	bcgsc.ca	37	11	76868380	76868380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MYO7A	NM_001127179	exon8	c.A791G	p.E264G	.	.	199	9	147	2	.	138
MYOZ2	51778	bcgsc.ca	37	4	120072190	120072190	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MYOZ2	NM_016599	exon3	c.A240G	p.Q80Q	.	.	83	4	83	0	.	90
MYPN	84665	bcgsc.ca	37	10	69954237	69954237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MYPN	NM_001256267	exon15	c.G3043A	p.G1015S	.	.	51	4	97	0	.	95
NAA60	79903	bcgsc.ca	37	16	3533371	3533371	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001083600	exon5	c.T346C	p.L116L	.	.	150	5	136	1	.	.
NALCN	259232	bcgsc.ca	37	13	101881774	101881774	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NALCN	NM_052867	exon13	c.A1596G	p.E532E	.	.	71	5	119	0	.	167
NBEA	26960	bcgsc.ca	37	13	36167470	36167470	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NBEA	NM_015678	exon47	c.T7182C	p.P2394P	.	.	134	5	258	1	.	144
ND2	0	bcgsc.ca	37	MT	4794	4794	+	Missense_Mutation	SNP	G	G	A	rs41485244		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	ENST00000361453	exon1	c.G325A	p.A109T	.	.	83	63	115	3	.	.
NEFM	4741	bcgsc.ca	37	8	24775015	24775015	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NEFM	NM_005382	exon3	c.A1647G	p.E549E	.	.	165	6	134	0	.	577
NEK2	4751	bcgsc.ca	37	1	211847805	211847805	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NEK2	NM_002497	exon2	c.A147G	p.K49K	.	.	311	9	276	0	.	765
NELFCD	51497	bcgsc.ca	37	20	57569182	57569182	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_198976	exon14	c.T1653C	p.A551A	.	.	191	6	111	0	.	.
NF2	4771	bcgsc.ca	37	22	30035163	30035163	+	Silent	SNP	C	C	T	rs201603384		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NF2	NM_000268	exon3	c.C325T	p.L109L	.	.	153	6	213	0	C|0.999;T|0.001	4696
NHSL2	340527	bcgsc.ca	37	X	71358964	71358964	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NHSL2	NM_001013627	exon6	c.T1566C	p.C522C	.	.	149	5	124	0	.	108
NKTR	4820	bcgsc.ca	37	3	42675082	42675082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NKTR	NM_005385	exon10	c.A784G	p.R262G	.	.	56	5	113	0	.	93
NLGN4X	57502	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5821679	5821679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NLGN4X	NM_181332	exon5	c.A1040G	p.D347G	.	.	567	176	413	2	.	195
NLRC3	197358	bcgsc.ca	37	16	3606923	3606923	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NLRC3	NM_178844	exon8	c.G2172A	p.L724L	.	.	98	5	99	0	.	96
NOL9	79707	bcgsc.ca	37	1	6601949	6601949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NOL9	NM_024654	exon6	c.A1016G	p.Q339R	.	.	84	4	111	0	.	515
NR2C1	7181	bcgsc.ca	37	12	95422208	95422208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NR2C1	NM_003297	exon12	c.G1486A	p.G496R	.	.	125	6	125	0	.	187
NRBP1	29959	bcgsc.ca	37	2	27659682	27659682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NRBP1	NM_013392	exon8	c.T724C	p.F242L	.	.	365	10	389	2	.	334
NRXN1	9378	bcgsc.ca	37	2	50850504	50850504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NRXN1	NM_001135659	exon7	c.A1181G	p.K394R	.	.	118	5	176	1	.	92
NSMAF	8439	bcgsc.ca	37	8	59512377	59512377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NSMAF	NM_001144772	exon18	c.A1478G	p.K493R	.	.	194	6	126	0	.	91
NUP133	55746	bcgsc.ca	37	1	229636591	229636591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NUP133	NM_018230	exon4	c.T425C	p.L142P	.	.	76	4	100	0	.	271
NUP88	4927	bcgsc.ca	37	17	5314094	5314094	+	Silent	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NUP88	NM_002532	exon4	c.T609A	p.R203R	.	.	66	4	66	0	.	204
NVL	4931	bcgsc.ca	37	1	224499505	224499505	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NVL	NM_001243147	exon5	c.A339G	p.P113P	.	.	151	6	132	0	.	92
OAS1	4938	bcgsc.ca	37	12	113346442	113346442	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OAS1	NM_001032409	exon2	c.C282T	p.R94R	.	.	127	5	131	0	.	70
OR10S1	219873	bcgsc.ca	37	11	123847473	123847473	+	Missense_Mutation	SNP	A	A	G	rs55944888	byfrequency	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR10S1	NM_001004474	exon1	c.T926C	p.V309A	.	.	91	5	46	1	A|0.862;G|0.138	70
OR10T2	128360	bcgsc.ca	37	1	158369057	158369057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR10T2	NM_001004475	exon1	c.T200C	p.L67P	.	.	57	4	73	1	.	70
OR4A5	81318	bcgsc.ca	37	11	51412139	51412139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR4A5	NM_001005272	exon1	c.A257G	p.D86G	.	.	135	5	337	0	.	92
OR5P2	120065	bcgsc.ca	37	11	7817554	7817554	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR5P2	NM_153444	exon1	c.T936C	p.Y312Y	.	.	68	4	121	0	.	496
OR6A2	8590	bcgsc.ca	37	11	6816352	6816352	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR6A2	NM_003696	exon1	c.T588C	p.D196D	.	.	70	4	118	0	.	94
OR8B8	26493	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310394	124310394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR8B8	NM_012378	exon1	c.G588T	p.E196D	.	.	267	64	204	3	.	69
OR8H2	390151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55872687	55872687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR8H2	NM_001005200	exon1	c.C169T	p.H57Y	.	.	302	33	301	1	.	70
ORC3	23595	broad.mit.edu;bcgsc.ca	37	6	88313174	88313174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ORC3	NM_181837	exon4	c.T250C	p.F84L	.	.	335	11	433	1	.	206
PALM2-AKAP2	445815	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112918686	112918686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PALM2-AKAP2	NM_007203	exon9	c.G3083A	p.G1028E	.	.	99	10	119	1	.	475
PAMR1	25891	bcgsc.ca	37	11	35489621	35489621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PAMR1	NM_001001991	exon6	c.T748C	p.C250R	.	.	85	4	66	1	.	70
PARP2	10038	bcgsc.ca	37	14	20815050	20815050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PARP2	NM_005484	exon4	c.T341C	p.V114A	.	.	66	4	55	0	.	661
PAX5	5079	bcgsc.ca	37	9	37033998	37033998	+	Silent	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PAX5	NM_016734	exon1	c.C31A	p.R11R	.	.	238	7	135	1	.	1851
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55839135	55839135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDH15	NM_001142763	exon18	c.C2062T	p.R688C	.	.	151	61	264	1	.	193
PCDH20	64881	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	61987587	61987587	+	Silent	SNP	C	C	T	rs201107730	alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDH20	NM_022843	exon2	c.G645A	p.S215S	.	.	92	20	107	1	C|0.999;A|0.000	581
PCDHA12	56137	bcgsc.ca	37	5	140255058	140255058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_018903	exon1	c.A1G	p.M1V	.	.	131	5	114	0	.	.
PCDHA12	56137	bcgsc.ca	37	5	140257419	140257419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_018903	exon1	c.A2362G	p.S788G	.	.	84	4	75	0	.	.
PCDHGC5	56097	broad.mit.edu;bcgsc.ca	37	5	140890573	140890573	+	Missense_Mutation	SNP	C	C	T	rs148119281		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDHGC5	NM_018929	exon4	c.C2668T	p.R890C	.	.	203	10	136	1	C|1.000;T|0.000	25
PCF11	51585	bcgsc.ca	37	11	82892131	82892131	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCF11	NM_015885	exon12	c.A4065G	p.T1355T	.	.	159	5	142	0	.	23
PCMTD1	115294	bcgsc.ca	37	8	52733196	52733196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCMTD1	NM_052937	exon6	c.G789T	p.M263I	.	.	542	26	577	15	.	68
PDE3A	5139	bcgsc.ca	37	12	20787908	20787908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PDE3A	NM_000921	exon8	c.A1919G	p.E640G	.	.	100	5	139	0	.	94
PDE4A	5141	bcgsc.ca	37	19	10570135	10570135	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PDE4A	NM_001111307	exon9	c.A1161G	p.G387G	.	.	153	6	102	1	.	523
PDGFRA	5156	bcgsc.ca	37	4	55155269	55155269	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PDGFRA	NM_006206	exon21	c.A2868G	p.G956G	.	.	156	8	225	2	.	9497
PFKFB3	5209	bcgsc.ca	37	10	6262701	6262701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PFKFB3	NM_004566	exon8	c.T704C	p.I235T	.	.	163	7	105	1	.	117
PGAM2	5224	hgsc.bcm.edu	37	7	44102382	44102383	+	Frame_Shift_Ins	INS	-	-	C	rs144439892	by1000genomes	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PGAM2	NM_000290	exon3	c.743_744insG	p.A248fs	.	.	268	26	146	0	.	226
PGM3	5238	bcgsc.ca	37	6	83892588	83892588	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PGM3	NM_001199917	exon6	c.G651A	p.K217K	.	.	102	5	139	0	.	90
PHF19	26147	bcgsc.ca	37	9	123623377	123623377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PHF19	NM_015651	exon13	c.A1294G	p.S432G	.	.	92	4	98	1	.	136
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85712084	85712084	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PICALM	NM_007166	exon10	c.T1011C	p.A337A	.	.	584	158	520	0	.	659
PIEZO1	9780	bcgsc.ca	37	16	88785990	88785990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001142864	exon44	c.A6463G	p.T2155A	.	.	133	5	121	0	.	.
PKD1L3	342372	bcgsc.ca	37	16	71964005	71964005	+	RNA	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PKD1L3	.	.	.	.	.	.	145	6	186	1	.	68
PKDREJ	10343	bcgsc.ca	37	22	46654981	46654981	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PKDREJ	NM_006071	exon1	c.A4239G	p.Q1413Q	.	.	116	5	175	1	.	156
PLCB4	5332	bcgsc.ca	37	20	9389787	9389787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PLCB4	NM_001172646	exon23	c.A1958G	p.N653S	.	.	132	6	118	0	.	274
PLCG2	5336	ucsc.edu	37	16	81941306	81941306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PLCG2	NM_002661	exon16	c.A1484G	p.Y495C	.	.	39	4	50	0	.	892
PLEKHA5	54477	bcgsc.ca	37	12	19410385	19410385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PLEKHA5	NM_001143821	exon6	c.A451G	p.K151E	.	.	96	6	143	0	.	227
PLXDC1	57125	bcgsc.ca	37	17	37239776	37239776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PLXDC1	NM_020405	exon9	c.A925G	p.S309G	.	.	218	14	110	3	.	93
PLXNC1	10154	bcgsc.ca	37	12	94698977	94698977	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PLXNC1	NM_005761	exon31	c.A4623G	p.R1541R	.	.	85	5	238	0	.	92
POLE	5426	bcgsc.ca	37	12	133238134	133238134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	POLE	NM_006231	exon24	c.A2843G	p.E948G	.	.	229	6	184	0	.	233
POLG	5428	bcgsc.ca	37	15	89866089	89866089	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	POLG	NM_002693	exon14	c.C2310T	p.F770F	.	.	106	5	79	1	.	228
POMT2	29954	bcgsc.ca	37	14	77769260	77769260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	POMT2	NM_013382	exon5	c.T574C	p.Y192H	.	.	56	4	46	0	.	91
POSTN	10631	bcgsc.ca	37	13	38161059	38161059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	POSTN	NM_006475	exon6	c.A613G	p.T205A	.	.	74	4	131	0	.	516
POU6F1	5463	hgsc.bcm.edu	37	12	51589910	51589911	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	POU6F1	NM_002702	exon3	c.92_93insG	p.A31fs	.	.	116	13	58	0	.	91
PPIP5K2	23262	bcgsc.ca	37	5	102465328	102465328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PPIP5K2	NM_015216	exon1	c.A35G	p.E12G	.	.	54	4	74	0	.	92
PPM1B	5495	bcgsc.ca	37	2	44457578	44457578	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PPM1B	NM_002706	exon6	c.A1161G	p.G387G	.	.	165	6	161	0	.	227
PPP1R10	5514	bcgsc.ca	37	6	30576940	30576940	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PPP1R10	NM_002714	exon4	c.T108C	p.S36S	.	.	79	4	88	3	.	660
PPP3CB	5532	bcgsc.ca	37	10	75227407	75227407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PPP3CB	NM_001142354	exon9	c.A1012G	p.M338V	.	.	89	4	94	0	.	226
PRAME	23532	bcgsc.ca	37	22	22893287	22893287	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRAME	NM_206954	exon4	c.T246C	p.P82P	.	.	72	4	68	0	.	515
PRDM9	56979	bcgsc.ca	37	5	23526770	23526770	+	Missense_Mutation	SNP	A	A	G	rs200390172		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRDM9	NM_020227	exon11	c.A1573G	p.K525E	.	.	132	5	191	0	A|1.000;G|0.000	139
PRG4	10216	bcgsc.ca	37	1	186270828	186270828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRG4	NM_005807	exon4	c.A304G	p.S102G	.	.	113	5	116	2	.	91
PRKAA2	5563	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	57161707	57161707	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRKAA2	NM_006252	exon6	c.G663A	p.T221T	.	.	595	37	568	1	.	885
PRKCA	5578	broad.mit.edu;bcgsc.ca	37	17	64783028	64783028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRKCA	NM_002737	exon15	c.T1649C	p.I550T	.	.	345	12	265	0	.	1404
PRKG2	5593	bcgsc.ca	37	4	82092949	82092949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRKG2	NM_006259	exon3	c.T638C	p.L213P	.	.	72	4	105	0	.	524
PRMT3	10196	bcgsc.ca	37	11	20515711	20515711	+	Splice_Site	SNP	A	A	G	rs201771618	alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRMT3	NM_005788	exon15	c.1399-2A>G	.	.	.	200	6	203	0	A|0.999;T|0.001	90
PRMT8	56341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	3702274	3702274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRMT8	NM_019854	exon10	c.G1111A	p.D371N	.	.	126	15	108	0	.	94
PSMD9	5715	broad.mit.edu	37	12	122340982	122340982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PSMD9	NM_002813	exon4	c.A524G	p.N175S	.	.	374	10	333	0	.	90
PTPRD	5789	bcgsc.ca	37	9	8341913	8341913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PTPRD	NM_002839	exon40	c.A4727G	p.E1576G	.	.	165	5	405	1	.	912
PTPRK	5796	bcgsc.ca	37	6	128312488	128312488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PTPRK	NM_001135648	exon21	c.A2948G	p.E983G	.	.	119	5	294	0	.	231
PTPRS	5802	bcgsc.ca	37	19	5212496	5212496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PTPRS	NM_002850	exon31	c.T4621C	p.S1541P	.	.	78	6	40	0	.	357
PUM2	23369	bcgsc.ca	37	2	20483240	20483240	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PUM2	NM_015317	exon10	c.A1299G	p.Q433Q	.	.	85	5	129	0	.	91
PXDNL	137902	bcgsc.ca	37	8	52320948	52320948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PXDNL	NM_144651	exon17	c.T3236C	p.L1079P	.	.	89	5	57	0	.	70
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37756823	37756823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB11FIP1	NM_025151	exon1	c.A137T	p.Q46L	.	.	79	26	24	0	.	92
RAB27B	5874	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	52556472	52556472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB27B	NM_004163	exon6	c.C485A	p.T162K	.	.	71	24	134	1	.	227
RAB3GAP1	22930	bcgsc.ca	37	2	135893411	135893411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB3GAP1	NM_001172435	exon17	c.T1832C	p.M611T	.	.	210	6	204	0	.	92
RABGEF1	27342	bcgsc.ca	37	7	66260509	66260509	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RABGEF1	NM_014504	exon5	c.T525C	p.I175I	.	.	114	5	95	0	.	228
RAI1	10743	bcgsc.ca	37	17	17697512	17697512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAI1	NM_030665	exon3	c.T1250C	p.L417P	.	.	104	8	67	0	.	91
RASAL1	8437	bcgsc.ca	37	12	113557193	113557193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RASAL1	NM_004658	exon7	c.T484C	p.W162R	.	.	66	4	60	0	.	229
RASAL1	8437	ucsc.edu	37	12	113549921	113549921	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RASAL1	NM_004658	exon14	c.G1344A	p.V448V	.	.	30	4	18	0	.	229
RASD1	51655	bcgsc.ca	37	17	17398681	17398681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RASD1	NM_016084	exon2	c.A604G	p.S202G	.	.	144	7	66	0	.	659
RBBP5	5929	bcgsc.ca	37	1	205074257	205074257	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RBBP5	NM_005057	exon4	c.T258C	p.T86T	.	.	70	4	56	0	.	226
RBL1	5933	bcgsc.ca	37	20	35651100	35651100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RBL1	NM_183404	exon17	c.A2512G	p.R838G	.	.	218	6	238	0	.	419
RCBTB1	55213	bcgsc.ca	37	13	50140899	50140899	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RCBTB1	NM_018191	exon4	c.T132C	p.F44F	.	.	123	5	150	0	.	91
RFTN1	23180	bcgsc.ca	37	3	16535299	16535299	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RFTN1	NM_015150	exon2	c.T78C	p.P26P	.	.	286	8	268	0	.	93
RGPD2	729857	hgsc.bcm.edu	37	2	88082657	88082660	+	Frame_Shift_Del	DEL	TAGA	TAGA	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	TAGA	TAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001078170	exon20	c.3883_3886del	p.1295_1296del	.	.	541	46	952	0	.	.
RIC8A	60626	broad.mit.edu;ucsc.edu	37	11	214285	214285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIC8A	NM_021932	exon10	c.C1549T	p.Q517X	.	.	138	9	82	0	.	514
RIMS1	22999	hgsc.bcm.edu	37	6	73100387	73100388	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIMS1	NM_014989	exon30	c.4454_4455insG	p.P1485fs	.	.	120	8	122	0	.	144
RIMS2	9699	ucsc.edu;bcgsc.ca	37	8	104897856	104897856	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIMS2	NM_001100117	exon4	c.A1029G	p.P343P	.	.	44	4	130	0	.	279
RNF213	57674	bcgsc.ca	37	17	78336955	78336955	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RNF213	NM_001256071	exon40	c.A11409G	p.E3803E	.	.	135	6	108	0	.	577
RNF6	6049	bcgsc.ca	37	13	26789174	26789174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RNF6	NM_183043	exon5	c.A845G	p.E282G	.	.	165	6	242	2	.	228
ROS1	6098	bcgsc.ca	37	6	117631318	117631318	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ROS1	NM_002944	exon40	c.A6360G	p.E2120E	.	.	74	5	125	0	.	1353
ROS1	6098	bcgsc.ca	37	6	117641141	117641141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ROS1	NM_002944	exon36	c.A5830G	p.K1944E	.	.	61	4	145	0	.	1353
RPS6KL1	83694	bcgsc.ca	37	14	75375816	75375816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RPS6KL1	NM_031464	exon8	c.T1348C	p.Y450H	.	.	74	4	57	0	.	359
RRN3P3	100131998	bcgsc.ca	37	16	22441145	22441145	+	RNA	SNP	C	C	A	rs202163358	byfrequency	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	.	.	.	.	.	.	306	20	285	6	C|0.848;A|0.152	.
RTEL1	51750	bcgsc.ca	37	20	62321734	62321734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RTEL1	NM_032957	exon26	c.T2425C	p.S809P	.	.	72	6	48	0	.	44
SCN10A	6336	ucsc.edu;bcgsc.ca	37	3	38830477	38830477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SCN10A	NM_006514	exon3	c.T440C	p.M147T	.	.	42	5	113	0	.	99
SDHAF2	54949	bcgsc.ca	37	11	61213491	61213491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SDHAF2	NM_017841	exon4	c.A449G	p.E150G	.	.	76	4	75	0	.	92
SEMA4G	57715	bcgsc.ca	37	10	102743080	102743080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SEMA4G	NM_017893	exon14	c.A1724G	p.K575R	.	.	68	5	65	0	.	154
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122629075	122629075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SEMA5B	NM_001256347	exon23	c.C3533T	p.T1178M	.	.	704	231	620	0	.	157
SERAC1	84947	ucsc.edu;bcgsc.ca	37	6	158535835	158535835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SERAC1	NM_032861	exon15	c.A1670G	p.K557R	.	.	46	4	111	0	.	90
SETD3	84193	bcgsc.ca	37	14	99871644	99871644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SETD3	NM_032233	exon10	c.A989G	p.D330G	.	.	120	5	109	0	.	514
SF3B2	10992	bcgsc.ca	37	11	65827371	65827371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SF3B2	NM_006842	exon13	c.A1520G	p.K507R	.	.	120	6	86	0	.	92
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48244792	48244792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SGCA	NM_001135697	exon2	c.G101T	p.R34L	.	.	219	51	130	0	.	92
SH3BP4	23677	bcgsc.ca	37	2	235950651	235950651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SH3BP4	NM_014521	exon4	c.T1238C	p.L413P	.	.	93	7	76	1	.	94
SH3RF3	344558	bcgsc.ca	37	2	109964202	109964202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SH3RF3	NM_001099289	exon2	c.A646G	p.N216D	.	.	158	6	112	0	.	24
SIPA1L2	57568	broad.mit.edu	37	1	232615460	232615460	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SIPA1L2	NM_020808	exon5	c.G1998A	p.T666T	.	.	123	4	148	0	.	95
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38610466	38610466	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SIPA1L3	NM_015073	exon9	c.C2812T	p.L938L	.	.	76	31	47	0	.	91
SLC10A7	84068	bcgsc.ca	37	4	147431203	147431203	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC10A7	NM_001029998	exon4	c.184-2A>G	.	.	.	111	5	141	0	.	22
SLC16A1	6566	bcgsc.ca	37	1	113460236	113460236	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC16A1	NM_001166496	exon4	c.G792A	p.L264L	.	.	211	6	171	0	.	514
SLC4A8	9498	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	51863457	51863457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC4A8	NM_001039960	exon12	c.A1409C	p.Y470S	.	.	522	49	548	2	.	95
SLC5A8	160728	bcgsc.ca	37	12	101588879	101588879	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC5A8	NM_145913	exon4	c.C531T	p.C177C	.	.	69	4	93	0	.	90
SLC6A5	9152	bcgsc.ca	37	11	20636352	20636352	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC6A5	NM_004211	exon6	c.T1113C	p.S371S	.	.	166	7	171	2	.	156
SLCO2B1	11309	broad.mit.edu;bcgsc.ca	37	11	74904564	74904564	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLCO2B1	NM_007256	exon9	c.G1377A	p.P459P	.	.	211	10	159	0	.	154
SLIT3	6586	broad.mit.edu	37	5	168112900	168112900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLIT3	NM_001271946	exon31	c.T3368C	p.V1123A	.	.	53	4	36	0	.	95
SLX4IP	128710	broad.mit.edu;bcgsc.ca	37	20	10603454	10603454	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001009608	exon8	c.C654T	p.S218S	.	.	68	5	54	0	.	.
SMARCE1	6605	bcgsc.ca	37	17	38792203	38792203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SMARCE1	NM_003079	exon7	c.A521G	p.Q174R	.	.	217	7	284	0	.	227
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53409455	53409455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SMC1A	NM_006306	exon21	c.A3257T	p.K1086M	.	.	139	37	137	0	.	232
SMC4	10051	bcgsc.ca	37	3	160135648	160135648	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SMC4	NM_005496	exon10	c.A1575G	p.E525E	.	.	109	6	121	1	.	291
SMCO2	0	bcgsc.ca	37	12	27625787	27625787	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001145010	exon3	c.T213C	p.P71P	.	.	63	4	72	0	.	.
SMOC1	64093	bcgsc.ca	37	14	70490111	70490111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SMOC1	NM_001034852	exon11	c.A1238G	p.D413G	.	.	121	5	129	0	.	92
SNX5	27131	bcgsc.ca	37	20	17937638	17937638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SNX5	NM_014426	exon2	c.A95G	p.Q32R	.	.	395	10	301	0	.	289
SORBS3	10174	bcgsc.ca	37	8	22423900	22423900	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SORBS3	NM_005775	exon13	c.C993T	p.Y331Y	.	.	49	5	42	0	.	90
SORCS1	114815	bcgsc.ca	37	10	108459143	108459143	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SORCS1	NM_001206572	exon9	c.T1242C	p.H414H	.	.	70	4	166	1	.	153
SPEF2	79925	bcgsc.ca	37	5	35727883	35727883	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SPEF2	NM_024867	exon21	c.A3021G	p.P1007P	.	.	121	5	96	0	.	26
SPEN	23013	bcgsc.ca	37	1	16247402	16247402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SPEN	NM_015001	exon9	c.T1673C	p.L558P	.	.	102	6	117	0	.	298
SPEN	23013	bcgsc.ca	37	1	16254638	16254638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	SPEN,NS,carcinoma,-2	SPEN	NM_015001	exon11	c.A1903G	p.S635G	.	.	142	5	183	2	.	298
SPINT2	10653	bcgsc.ca	37	19	38779833	38779833	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SPINT2	NM_021102	exon4	c.391+2T>C	.	.	.	147	7	90	0	.	90
SPTBN2	6712	hgsc.bcm.edu	37	11	66461311	66461312	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SPTBN2	NM_006946	exon22	c.4525_4526insG	p.P1509fs	.	.	115	16	95	0	.	155
SRP72	6731	bcgsc.ca	37	4	57340499	57340499	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SRP72	NM_006947	exon5	c.T552C	p.C184C	.	.	187	6	145	0	.	116
SRRM2	23524	bcgsc.ca	37	16	2818220	2818220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SRRM2	NM_016333	exon11	c.A7691G	p.E2564G	.	.	82	4	95	4	.	93
SRRM4	84530	bcgsc.ca	37	12	119583324	119583324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SRRM4	NM_194286	exon9	c.T910C	p.S304P	.	.	79	6	52	0	.	2
ST8SIA1	6489	bcgsc.ca	37	12	22402028	22402028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ST8SIA1	NM_003034	exon4	c.A496G	p.N166D	.	.	131	6	137	0	.	93
STAB2	55576	bcgsc.ca	37	12	104129306	104129306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STAB2	NM_017564	exon52	c.A5498G	p.K1833R	.	.	56	4	85	1	.	104
STK10	6793	bcgsc.ca	37	5	171472018	171472018	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STK10	NM_005990	exon19	c.A2775G	p.E925E	.	.	141	6	94	0	.	1022
STK11IP	114790	bcgsc.ca	37	2	220466733	220466733	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STK11IP	NM_052902	exon5	c.T399C	p.C133C	.	.	153	7	138	0	.	91
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109339272	109339272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STXBP3	NM_007269	exon15	c.T1280A	p.I427N	.	.	208	61	230	0	.	93
STXBP5	134957	bcgsc.ca	37	6	147684774	147684774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STXBP5	NM_001127715	exon24	c.T2849C	p.I950T	.	.	79	4	104	0	.	90
SULT1C4	27233	bcgsc.ca	37	2	108999900	108999900	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SULT1C4	NM_006588	exon5	c.G549A	p.V183V	.	.	182	7	169	2	.	22
SUPT20H	55578	bcgsc.ca	37	13	37621689	37621689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001014286	exon5	c.A148G	p.K50E	.	.	214	6	556	3	.	.
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67957441	67957441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SUV420H1	NM_017635	exon2	c.A103T	p.T35S	.	.	462	122	538	0	.	228
SYNE2	23224	bcgsc.ca	37	14	64692219	64692219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SYNE2	NM_182914	exon116	c.A20699G	p.Y6900C	.	.	124	5	103	0	.	164
SYNPO2	171024	broad.mit.edu	37	4	119944699	119944699	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SYNPO2	NM_001128934	exon2	c.G220T	p.E74X	.	.	237	8	280	0	.	92
SYTL3	94120	bcgsc.ca	37	6	159139134	159139134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SYTL3	NM_001242384	exon11	c.A611G	p.Q204R	.	.	90	6	104	0	.	90
TAOK3	51347	bcgsc.ca	37	12	118681233	118681233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TAOK3	NM_016281	exon5	c.A281G	p.E94G	.	.	151	6	181	0	.	933
TARBP1	6894	bcgsc.ca	37	1	234586232	234586232	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TARBP1	NM_005646	exon10	c.T1803C	p.S601S	.	.	252	7	262	0	.	93
TBC1D4	9882	bcgsc.ca	37	13	75886954	75886954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TBC1D4	NM_014832	exon13	c.G2303T	p.R768L	.	.	87	4	104	0	.	95
TBCK	93627	bcgsc.ca	37	4	107092327	107092327	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TBCK	NM_001163436	exon23	c.T2160C	p.S720S	.	.	194	6	413	2	.	336
TCEANC2	127428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54520147	54520148	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TCEANC2	NM_153035	exon2	c.52_53insT	p.K18fs	.	.	151	43	110	0	.	91
TCP11L2	255394	bcgsc.ca	37	12	106734618	106734618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TCP11L2	NM_152772	exon9	c.A1157G	p.K386R	.	.	135	5	194	0	.	93
TCTN3	26123	bcgsc.ca	37	10	97447415	97447415	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TCTN3	NM_015631	exon4	c.T561C	p.A187A	.	.	171	6	199	0	.	22
TDGF1P3	6998	broad.mit.edu	37	X	109764525	109764525	+	RNA	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	.	.	.	.	.	.	70	7	125	0	.	.
TDRD7	23424	bcgsc.ca	37	9	100227177	100227177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TDRD7	NM_014290	exon8	c.A1496G	p.K499R	.	.	115	5	141	2	.	93
TEK	7010	bcgsc.ca	37	9	27173294	27173294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TEK	NM_000459	exon6	c.T835C	p.F279L	.	.	138	5	228	0	.	1584
TGFBI	7045	bcgsc.ca	37	5	135385228	135385228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TGFBI	NM_000358	exon7	c.A872G	p.E291G	.	.	149	5	97	0	.	26
TGS1	96764	bcgsc.ca	37	8	56699548	56699548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TGS1	NM_024831	exon4	c.A1091G	p.E364G	.	.	160	6	160	1	.	227
THEMIS	387357	bcgsc.ca	37	6	128222032	128222032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	THEMIS	NM_001010923	exon1	c.A46G	p.T16A	.	.	92	4	216	0	.	94
TLN2	83660	bcgsc.ca	37	15	63131157	63131157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TLN2	NM_015059	exon55	c.A7477G	p.K2493E	.	.	137	7	101	0	.	573
TLR8	51311	bcgsc.ca	37	X	12937611	12937611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TLR8	NM_138636	exon2	c.T452C	p.L151P	.	.	160	5	320	1	.	629
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	75355074	75355074	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMC1	NM_138691	exon9	c.T402A	p.L134L	.	.	275	67	271	0	.	91
TMEM260	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57075883	57075883	+	Silent	SNP	C	C	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_017799	exon6	c.C696G	p.P232P	.	.	610	133	582	0	.	.
TMOD1	7111	bcgsc.ca	37	9	100308559	100308559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMOD1	NM_001166116	exon3	c.G213T	p.L71F	.	.	79	4	68	0	.	90
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111797619	111797619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMPRSS7	NM_001042575	exon15	c.C1877T	p.A626V	.	.	231	64	218	0	.	70
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	9627614	9627614	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TNKS	NM_003747	exon26	c.3741-2A>T	.	.	.	38	21	28	0	.	660
TOPBP1	11073	broad.mit.edu	37	3	133368261	133368261	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TOPBP1	NM_007027	exon10	c.G1470A	p.L490L	.	.	221	7	241	0	.	540
TOPBP1	11073	broad.mit.edu;bcgsc.ca	37	3	133362215	133362215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TOPBP1	NM_007027	exon12	c.T1850C	p.V617A	.	.	193	6	215	1	.	540
TOPORS	10210	ucsc.edu;bcgsc.ca	37	9	32544214	32544214	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TOPORS	NM_005802	exon3	c.T309C	p.C103C	.	.	46	4	40	0	.	230
TPI1P3	728402	ucsc.edu	37	6	116360173	116360173	+	RNA	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	.	.	.	.	.	.	27	4	29	0	.	.
TPX2	22974	bcgsc.ca	37	20	30380607	30380607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TPX2	NM_012112	exon13	c.A1483G	p.I495V	.	.	147	5	137	0	.	290
TRAF4	9618	bcgsc.ca	37	17	27076426	27076426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TRAF4	NM_004295	exon7	c.A1244G	p.K415R	.	.	135	6	91	0	.	660
TRIO	7204	bcgsc.ca	37	5	14293125	14293125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TRIO	NM_007118	exon6	c.T1058C	p.F353S	.	.	94	5	89	0	.	562
TRPM3	80036	ucsc.edu;bcgsc.ca	37	9	73253992	73253992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TRPM3	NM_001007471	exon11	c.A1565G	p.E522G	.	.	45	4	78	0	.	521
TSNAX	7257	bcgsc.ca	37	1	231673027	231673027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TSNAX	NM_005999	exon3	c.A190G	p.T64A	.	.	268	7	230	1	.	90
TTC40	54777	bcgsc.ca	37	10	134679551	134679551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001200049	exon35	c.C4868T	p.S1623L	.	.	38	15	46	2	.	.
TTC40	54777	bcgsc.ca	37	10	134755191	134755191	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001200049	exon3	c.A210G	p.Q70Q	.	.	101	5	100	0	.	.
TTLL2	83887	bcgsc.ca	37	6	167754126	167754126	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TTLL2	NM_031949	exon3	c.T738C	p.P246P	.	.	190	6	273	2	.	92
TTN	7273	bcgsc.ca	37	2	179395933	179395933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TTN	NM_001267550	exon358	c.T105409C	p.S35137P	.	.	444	15	598	7	.	636
TTN	7273	bcgsc.ca	37	2	179424441	179424441	+	Silent	SNP	A	A	G	rs1206526		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TTN	NM_001267550	exon326	c.T86418C	p.S28806S	.	.	147	7	414	2	A|1.000;G|0.000	636
TTN	7273	bcgsc.ca	37	2	179431013	179431013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TTN	NM_001267550	exon326	c.T79846C	p.F26616L	.	.	59	4	204	1	.	636
TTN	7273	bcgsc.ca	37	2	179450065	179450065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TTN	NM_001267550	exon309	c.A64406G	p.K21469R	.	.	217	6	694	3	.	636
TUFT1	7286	broad.mit.edu;bcgsc.ca	37	1	151553434	151553434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TUFT1	NM_020127	exon12	c.A1025G	p.D342G	.	.	84	6	77	0	.	90
TYW1	55253	hgsc.bcm.edu;bcgsc.ca	37	7	66582482	66582482	+	Silent	SNP	G	G	A	rs13221716		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TYW1	NM_018264	exon13	c.G1575A	p.P525P	.	.	198	8	186	0	.	91
UBE2H	7328	bcgsc.ca	37	7	129474827	129474827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	UBE2H	NM_003344	exon7	c.A502G	p.S168G	.	.	239	9	156	0	.	226
UBR7	55148	bcgsc.ca	37	14	93685055	93685055	+	Missense_Mutation	SNP	G	G	T	rs147422567	byfrequency;alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	UBR7	NM_175748	exon7	c.G784T	p.G262C	.	.	161	6	144	0	G|0.999;A|0.001	90
UBXN7	26043	bcgsc.ca	37	3	196089190	196089190	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	UBXN7	NM_015562	exon9	c.A1203G	p.G401G	.	.	100	5	95	0	.	71
USP37	57695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219423315	219423315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	USP37	NM_020935	exon4	c.62delA	p.K21fs	.	.	301	86	335	0	.	661
USP42	84132	broad.mit.edu	37	7	6196467	6196467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	USP42	NM_032172	exon16	c.A3724G	p.R1242G	.	.	240	6	143	1	.	659
USP45	85015	bcgsc.ca	37	6	99891493	99891493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	USP45	NM_001080481	exon15	c.T2021C	p.L674P	.	.	281	8	440	3	.	637
UTRN	7402	bcgsc.ca	37	6	144878306	144878306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	UTRN	NM_007124	exon49	c.A7148G	p.E2383G	.	.	87	5	161	0	.	95
VAT1L	57687	bcgsc.ca	37	16	78005784	78005784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VAT1L	NM_020927	exon8	c.A1115G	p.N372S	.	.	64	4	80	0	.	90
VEZF1	7716	bcgsc.ca	37	17	56060587	56060587	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VEZF1	NM_007146	exon2	c.A201G	p.K67K	.	.	521	10	391	2	.	136
VGF	7425	hgsc.bcm.edu	37	7	100807026	100807028	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VGF	NM_003378	exon2	c.1097_1099del	p.366_367del	.	.	127	11	46	0	.	90
VPS13D	55187	bcgsc.ca	37	1	12414257	12414257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VPS13D	NM_015378	exon47	c.A9658G	p.T3220A	.	.	96	6	118	0	.	95
VPS36	51028	ucsc.edu;bcgsc.ca	37	13	52997746	52997746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VPS36	NM_016075	exon10	c.A803G	p.E268G	.	.	34	4	73	0	.	91
VRK1	7443	bcgsc.ca	37	14	97299859	97299859	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VRK1	NM_003384	exon2	c.A51G	p.R17R	.	.	59	5	103	0	.	358
VSTM4	196740	bcgsc.ca	37	10	50315942	50315942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VSTM4	NM_144984	exon2	c.A154G	p.R52G	.	.	85	5	93	1	.	154
WDR25	79446	bcgsc.ca	37	14	100847941	100847941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	WDR25	NM_001161476	exon2	c.G680T	p.S227I	.	.	63	5	59	1	.	90
WDR63	126820	bcgsc.ca	37	1	85598581	85598581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	WDR63	NM_145172	exon23	c.A2576G	p.K859R	.	.	80	4	137	1	.	95
WDTC1	23038	bcgsc.ca	37	1	27623590	27623590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	WDTC1	NM_001276252	exon11	c.A1001G	p.N334S	.	.	62	4	49	0	.	91
WHSC1L1	54904	bcgsc.ca	37	8	38137157	38137157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	WHSC1L1	NM_023034	exon21	c.T3661C	p.F1221L	.	.	192	7	143	0	.	658
WWC2	80014	bcgsc.ca	37	4	184207205	184207205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	WWC2	NM_024949	exon20	c.T3134C	p.V1045A	.	.	91	5	84	0	.	93
WWP1	11059	bcgsc.ca	37	8	87454970	87454970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	WWP1	NM_007013	exon18	c.T1961C	p.L654P	.	.	309	8	385	0	.	659
XPNPEP2	7512	bcgsc.ca	37	X	128880217	128880217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	XPNPEP2	NM_003399	exon5	c.G304A	p.A102T	.	.	95	6	76	1	.	130
XYLT2	64132	bcgsc.ca	37	17	48433880	48433880	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	XYLT2	NM_022167	exon8	c.C1491T	p.S497S	.	.	85	5	48	0	.	91
YAP1	10413	bcgsc.ca	37	11	102100580	102100580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	YAP1	NM_001130145	exon9	c.A1424G	p.Q475R	.	.	147	6	174	0	.	659
ZBTB43	23099	bcgsc.ca	37	9	129595679	129595679	+	Silent	SNP	A	A	G	rs146142256		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZBTB43	NM_001135776	exon2	c.A891G	p.K297K	.	.	108	5	79	1	A|1.000;G|0.000	91
ZC3H12C	85463	bcgsc.ca	37	11	110023678	110023678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZC3H12C	NM_033390	exon3	c.A808G	p.I270V	.	.	149	6	192	2	.	68
ZFC3H1	196441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72057379	72057379	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZFC3H1	NM_144982	exon1	c.A12T	p.A4A	.	.	43	10	35	0	.	138
ZFP69B	65243	broad.mit.edu	37	1	40928474	40928474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_023070	exon5	c.A818G	p.Y273C	.	.	312	6	358	1	.	.
ZFYVE16	9765	bcgsc.ca	37	5	79733499	79733499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZFYVE16	NM_001105251	exon4	c.A995G	p.Q332R	.	.	131	5	203	0	.	90
ZHX3	23051	bcgsc.ca	37	20	39831508	39831508	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZHX3	NM_015035	exon3	c.A2049G	p.E683E	.	.	247	9	205	2	.	93
ZKSCAN5	23660	bcgsc.ca	37	7	99129109	99129109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZKSCAN5	NM_145102	exon7	c.A1757G	p.Y586C	.	.	96	5	97	0	.	91
ZKSCAN8	7745	hgsc.bcm.edu	37	6	28121267	28121268	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_006298	exon6	c.1209_1210insAAA	p.E403delinsEK	.	.	103	21	83	0	.	.
ZNF283	284349	bcgsc.ca	37	19	44352634	44352634	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF283	NM_181845	exon7	c.T1881C	p.Y627Y	.	.	130	5	142	0	.	68
ZNF324B	388569	broad.mit.edu	37	19	58966568	58966568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF324B	NM_207395	exon4	c.A257G	p.E86G	.	.	416	7	343	2	.	91
ZNF341	84905	bcgsc.ca	37	20	32346594	32346594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF341	NM_032819	exon7	c.T989C	p.L330P	.	.	72	6	59	0	.	92
ZNF480	147657	broad.mit.edu;bcgsc.ca	37	19	52824945	52824945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF480	NM_144684	exon5	c.A442G	p.I148V	.	.	192	7	329	1	.	153
ZNF497	162968	broad.mit.edu	37	19	58868548	58868548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF497	NM_001207009	exon2	c.C454T	p.H152Y	.	.	286	8	163	0	.	90
ZNF501	115560	bcgsc.ca	37	3	44776172	44776172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF501	NM_001258280	exon3	c.T259C	p.F87L	.	.	60	4	74	0	.	90
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10446101	10446101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF518B	NM_053042	exon3	c.T1852A	p.L618I	.	.	293	77	403	1	.	72
ZNF534	147658	bcgsc.ca	37	19	52942654	52942654	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF534	NM_001143939	exon4	c.C1980T	p.S660S	.	.	134	6	160	0	.	68
ZNF540	163255	bcgsc.ca	37	19	38102491	38102491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF540	NM_152606	exon5	c.A310G	p.I104V	.	.	231	6	282	2	.	153
ZNF573	126231	bcgsc.ca	37	19	38230095	38230095	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF573	NM_001172690	exon5	c.T1296C	p.H432H	.	.	158	6	215	1	.	91
ZNF599	148103	bcgsc.ca	37	19	35251039	35251039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF599	NM_001007248	exon4	c.G667A	p.G223R	.	.	78	6	165	0	.	92
ZNF619	285267	bcgsc.ca	37	3	40529341	40529341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF619	NM_001145082	exon6	c.A1460G	p.Q487R	.	.	57	4	80	0	.	91
ZNF624	57547	bcgsc.ca	37	17	16525620	16525620	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF624	NM_020787	exon6	c.A2580G	p.R860R	.	.	294	9	296	0	.	154
ZNF624	57547	bcgsc.ca	37	17	16525940	16525940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF624	NM_020787	exon6	c.T2260C	p.C754R	.	.	275	9	192	0	.	154
ZNF678	339500	bcgsc.ca	37	1	227842073	227842073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF678	NM_178549	exon4	c.A287G	p.E96G	.	.	135	5	301	0	.	91
ZNF720	124411	bcgsc.ca	37	16	31765100	31765100	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001130913	exon4	c.T240C	p.H80H	.	.	77	4	156	0	.	.
ZNF729	100287226	bcgsc.ca	37	19	22498472	22498472	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF729	NM_001242680	exon4	c.T2253C	p.H751H	.	.	20	3	29	0	.	24
ZNF761	388561	bcgsc.ca	37	19	53959984	53959984	+	Silent	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF761	NM_001008401	exon7	c.T2223C	p.T741T	.	.	79	4	102	0	.	91
ZNF862	643641	broad.mit.edu	37	7	149558178	149558178	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF862	NM_001099220	exon7	c.C1929T	p.Y643Y	.	.	165	5	82	0	.	69
ZSWIM8	23053	bcgsc.ca	37	10	75560843	75560843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_015037	exon25	c.G5215A	p.E1739K	.	.	61	4	66	0	.	.
