Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AACS	65985	bcgsc.ca	37	12	125561118	125561118	+	Silent	SNP	C	C	A	rs77474358	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AACS	NM_023928	exon3	c.C319A	p.R107R	.	.	147	7	154	1	C|0.975;A|0.025	92
ABCA13	154664	bcgsc.ca	37	7	48559666	48559666	+	Silent	SNP	G	G	A	rs62447309	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCA13	NM_152701	exon53	c.G13827A	p.K4609K	.	.	135	10	142	1	G|0.945;A|0.055	521
ABCA13	154664	bcgsc.ca	37	7	48559696	48559696	+	Silent	SNP	T	T	C	rs61378229	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCA13	NM_152701	exon53	c.T13857C	p.C4619C	.	.	166	14	190	2	T|0.945;C|0.055	521
ABCB4	5244	bcgsc.ca	37	7	87056176	87056176	+	Missense_Mutation	SNP	T	T	C	rs2230028	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCB4	NM_018850	exon16	c.A1954G	p.R652G	.	.	197	11	205	2	T|0.693;G|0.024;C|0.141;A|0.142	96
ABCB5	340273	bcgsc.ca	37	7	20687181	20687181	+	Silent	SNP	C	C	T	rs2893006	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCB5	NM_001163941	exon10	c.C1005T	p.S335S	.	.	423	12	530	4	C|0.796;T|0.204	158
ABCB5	340273	bcgsc.ca	37	7	20687218	20687218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCB5	NM_001163941	exon10	c.A1042G	p.T348A	.	.	365	9	433	3	.	158
ABCB5	340273	bcgsc.ca	37	7	20768016	20768016	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCB5	NM_001163941	exon23	c.A2805G	p.A935A	.	.	149	6	168	1	.	158
ABCB7	22	bcgsc.ca	37	X	74318810	74318810	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCB7	NM_004299	exon4	c.T423C	p.V141V	.	.	96	5	87	0	.	131
ABCC12	94160	bcgsc.ca	37	16	48139198	48139198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCC12	NM_033226	exon19	c.T2525C	p.V842A	.	.	46	4	41	0	.	93
ABCC3	8714	bcgsc.ca	37	17	48753035	48753035	+	Missense_Mutation	SNP	C	C	T	rs35999272	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCC3	NM_003786	exon21	c.C2758T	p.P920S	.	.	131	6	110	0	C|0.955;T|0.045	93
ABCC9	10060	bcgsc.ca	37	12	22040762	22040762	+	Missense_Mutation	SNP	C	C	T	rs113542001	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABCC9	NM_005691	exon13	c.G1909A	p.V637I	.	.	270	10	234	2	C|0.999;T|0.001	96
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	973210	973210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.G1015C	p.G339R	.	.	94	35	69	0	.	91
ABR	29	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	973214	973214	+	Silent	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.T1011A	p.S337S	.	.	101	41	70	0	.	91
ACOT7	11332	bcgsc.ca	37	1	6393583	6393583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACOT7	NM_181864	exon4	c.T494C	p.L165P	.	.	124	5	137	0	.	514
ACOX1	51	bcgsc.ca	37	17	73951976	73951976	+	Silent	SNP	C	C	T	rs75808808	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACOX1	NM_007292	exon5	c.G591A	p.G197G	.	.	268	10	197	1	C|0.974;T|0.026	91
ACSF2	80221	bcgsc.ca	37	17	48539035	48539035	+	Silent	SNP	T	T	C	rs9674937	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACSF2	NM_025149	exon4	c.T495C	p.Y165Y	.	.	193	16	153	3	T|0.644;C|0.356	68
ACSM2B	348158	bcgsc.ca	37	16	20559777	20559777	+	Missense_Mutation	SNP	T	T	C	rs80135299	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACSM2B	NM_182617	exon8	c.A913G	p.I305V	.	.	911	30	1189	22	T|0.963;C|0.037	94
ACSS1	84532	bcgsc.ca	37	20	25003701	25003701	+	Missense_Mutation	SNP	C	C	T	rs144714391	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACSS1	NM_001252677	exon5	c.G835A	p.A279T	.	.	68	6	50	0	C|0.999;T|0.001	92
ACSS1	84532	ucsc.edu;bcgsc.ca	37	20	25003705	25003705	+	Silent	SNP	A	A	C	rs41308619	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACSS1	NM_001252677	exon5	c.T831G	p.V277V	.	.	64	6	47	0	A|0.960;C|0.040	92
ACTN3	89	bcgsc.ca	37	11	66329762	66329762	+	RNA	SNP	G	G	A	rs114618009	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACTN3	.	.	.	.	.	.	109	8	90	0	G|0.992;A|0.008	90
ACVR2A	92	bcgsc.ca	37	2	148684699	148684699	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ACVR2A	NM_001616	exon11	c.A1398G	p.A466A	.	.	197	7	231	0	.	831
ADAM22	53616	bcgsc.ca	37	7	87754915	87754915	+	Missense_Mutation	SNP	G	G	A	rs17255978	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAM22	NM_021722	exon8	c.G619A	p.V207I	.	.	152	7	267	2	G|0.933;A|0.067	230
ADAMTS12	81792	bcgsc.ca	37	5	33527307	33527307	+	Missense_Mutation	SNP	A	A	G	rs16891281	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS12	NM_030955	exon24	c.T4771C	p.S1591P	.	.	520	23	488	5	A|0.922;G|0.078	232
ADAMTS12	81792	bcgsc.ca	37	5	33549359	33549359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS12	NM_030955	exon21	c.T4255C	p.C1419R	.	.	70	4	71	0	.	232
ADAMTS20	80070	bcgsc.ca	37	12	43771359	43771359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS20	NM_025003	exon32	c.A4804G	p.N1602D	.	.	152	6	175	0	.	795
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79069906	79069906	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS7	NM_014272	exon9	c.C1347T	p.D449D	.	.	61	17	55	0	.	226
ADAMTSL3	57188	bcgsc.ca	37	15	84581889	84581889	+	Silent	SNP	G	G	A	rs12439867	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTSL3	NM_207517	exon16	c.G1746A	p.P582P	.	.	159	6	132	1	G|0.688;A|0.312	1153
ADAMTSL3	57188	bcgsc.ca	37	15	84581904	84581904	+	Silent	SNP	T	T	C	rs4842923	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	ADAMTSL3,colon,carcinoma,+1	ADAMTSL3	NM_207517	exon16	c.T1761C	p.R587R	.	.	146	8	125	0	T|0.354;C|0.646	1153
ADAMTSL4	54507	bcgsc.ca	37	1	150526034	150526034	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTSL4	NM_019032	exon6	c.A567G	p.R189R	.	.	155	6	80	1	.	92
ADCY10	55811	bcgsc.ca	37	1	167817691	167817691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADCY10	NM_018417	exon19	c.T2345C	p.V782A	.	.	222	6	130	0	.	493
ADHFE1	137872	mdanderson.org	37	8	67344785	67344785	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADHFE1	NM_144650	exon1	c.T34C	p.L12L	.	.	11	3	10	0	.	290
ADIPOR2	79602	bcgsc.ca	37	12	1893170	1893170	+	Silent	SNP	C	C	T	rs9805042	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADIPOR2	NM_024551	exon7	c.C963T	p.Y321Y	.	.	144	7	121	1	C|0.770;T|0.230	90
AFF4	27125	bcgsc.ca	37	5	132219055	132219055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AFF4	NM_014423	exon20	c.A3341G	p.E1114G	.	.	65	4	69	0	.	229
AFMID	125061	bcgsc.ca	37	17	76201182	76201182	+	Missense_Mutation	SNP	A	A	G	rs61742958	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AFMID	NM_001145526	exon7	c.A476G	p.Y159C	.	.	137	7	85	1	A|0.989;G|0.011	136
AFP	174	bcgsc.ca	37	4	74306527	74306527	+	Missense_Mutation	SNP	A	A	G	rs148186203	byfrequency;alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AFP	NM_001134	exon4	c.A479G	p.N160S	.	.	119	6	85	1	A|1.000;T|0.000	91
AFTPH	54812	bcgsc.ca	37	2	64779509	64779509	+	Missense_Mutation	SNP	G	G	A	rs3770740	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AFTPH	NM_017657	exon2	c.G901A	p.E301K	.	.	132	6	105	1	G|0.851;A|0.149	70
AGMO	392636	bcgsc.ca	37	7	15601393	15601393	+	Silent	SNP	A	A	G	rs59147126	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AGMO	NM_001004320	exon1	c.T78C	p.S26S	.	.	171	21	281	3	A|0.965;G|0.035	69
AKAP13	11214	bcgsc.ca	37	15	86122578	86122578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AKAP13	NM_007200	exon7	c.A1279G	p.T427A	.	.	81	4	73	0	.	258
AKAP6	9472	bcgsc.ca	37	14	33204891	33204891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AKAP6	NM_004274	exon11	c.A3175G	p.T1059A	.	.	125	5	80	0	.	733
AKAP9	10142	bcgsc.ca	37	7	91707020	91707020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AKAP9	NM_005751	exon30	c.A6776G	p.E2259G	.	.	139	5	135	0	.	755
AKR1B15	441282	bcgsc.ca	37	7	134262491	134262491	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AKR1B15	NM_001080538	exon11	c.A945G	p.A315A	.	.	128	5	168	0	.	23
ALCAM	214	bcgsc.ca	37	3	105258861	105258861	+	Missense_Mutation	SNP	A	A	G	rs1044240	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALCAM	NM_001627	exon7	c.A773G	p.N258S	.	.	177	11	187	3	A|0.885;G|0.115	92
ALDH16A1	126133	bcgsc.ca	37	19	49967981	49967981	+	Silent	SNP	T	T	G	rs11558188	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALDH16A1	NM_153329	exon12	c.T1530G	p.V510V	.	.	89	8	43	0	T|0.692;G|0.308	91
ALDH8A1	64577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135265052	135265052	+	Missense_Mutation	SNP	C	C	T	rs200812012		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALDH8A1	NM_022568	exon2	c.G191A	p.R64H	.	.	41	27	33	0	.	94
ALK	238	bcgsc.ca	37	2	29917735	29917735	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALK	NM_004304	exon3	c.T933C	p.R311R	.	.	74	5	42	0	.	3833
ALKBH8	91801	bcgsc.ca	37	11	107427616	107427616	+	Silent	SNP	C	C	G	rs17107135	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALKBH8	NM_138775	exon3	c.G243C	p.P81P	.	.	256	8	238	1	C|0.896;G|0.104	68
ALMS1	7840	bcgsc.ca	37	2	73677808	73677808	+	Missense_Mutation	SNP	C	C	G	rs115517108		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALMS1	NM_015120	exon8	c.C4151G	p.T1384R	.	.	143	12	128	1	C|0.991;G|0.009	142
AMTN	401138	bcgsc.ca	37	4	71384537	71384537	+	Missense_Mutation	SNP	C	C	T	rs35286445	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AMTN	NM_212557	exon2	c.C43T	p.R15W	.	.	189	6	190	2	C|0.887;T|0.113	153
ANGPT4	51378	bcgsc.ca	37	20	854940	854940	+	Silent	SNP	T	T	C	rs944110	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANGPT4	NM_015985	exon8	c.A1338G	p.Q446Q	.	.	226	10	129	1	T|0.549;C|0.451	92
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350737	89350737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD11	NM_001256183	exon9	c.G2213A	p.R738H	.	.	426	206	578	0	.	139
ANKRD13C	81573	bcgsc.ca	37	1	70742510	70742510	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD13C	NM_030816	exon10	c.T1233C	p.S411S	.	.	63	4	102	3	.	90
ANKRD17	26057	bcgsc.ca	37	4	74017243	74017243	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD17	NM_198889	exon8	c.1235-2A>G	.	.	.	70	4	61	0	.	234
ANKRD18A	253650	bcgsc.ca	37	9	38577092	38577092	+	Missense_Mutation	SNP	C	C	G	rs2993206	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD18A	NM_147195	exon14	c.G2699C	p.G900A	.	.	828	19	767	7	C|0.331;G|0.669	92
ANKRD18A	253650	bcgsc.ca	37	9	38577101	38577101	+	Missense_Mutation	SNP	G	G	A	rs2996335	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD18A	NM_147195	exon14	c.C2690T	p.A897V	.	.	820	20	761	8	G|0.966;A|0.034	92
ANKRD20A12P	100874392	broad.mit.edu	37	1	142713407	142713407	+	RNA	SNP	C	C	T	rs200984414		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	29	6	34	1	.	.
ANKRD28	23243	bcgsc.ca	37	3	15737698	15737698	+	Silent	SNP	T	T	C	rs2470549	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD28	NM_015199	exon15	c.A1512G	p.Q504Q	.	.	122	7	123	1	T|0.605;C|0.395	135
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145474788	145474788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD34A	NM_001039888	exon4	c.G1460T	p.S487I	.	.	125	28	35	0	.	68
ANKRD34C	390616	bcgsc.ca	37	15	79586865	79586865	+	Silent	SNP	G	G	A	rs55824566		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001146341	exon2	c.G1239A	p.L413L	.	.	157	9	140	1	G|0.963;A|0.037	.
ANO1	55107	bcgsc.ca	37	11	69933891	69933891	+	Missense_Mutation	SNP	G	G	A	rs76718681	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANO1	NM_018043	exon2	c.G142A	p.E48K	.	.	150	9	108	1	G|0.951;A|0.049	47
AP2A1	160	bcgsc.ca	37	19	50306425	50306425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AP2A1	NM_014203	exon18	c.T2299C	p.S767P	.	.	73	4	56	0	.	92
AP3D1	8943	bcgsc.ca	37	19	2109152	2109152	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AP3D1	NM_001261826	exon30	c.A3405G	p.K1135K	.	.	96	4	72	0	.	90
AP5Z1	9907	ucsc.edu;bcgsc.ca	37	7	4830316	4830316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_014855	exon16	c.G1951A	p.G651S	.	.	45	5	38	0	.	.
APAF1	317	bcgsc.ca	37	12	99109332	99109332	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	APAF1	NM_001160	exon21	c.2922+2T>C	.	.	.	134	5	137	0	.	229
APLF	200558	bcgsc.ca	37	2	68753240	68753240	+	Missense_Mutation	SNP	T	T	A	rs35002937	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	APLF	NM_173545	exon6	c.T670A	p.S224T	.	.	359	14	354	3	T|0.755;A|0.245	92
APOL2	23780	bcgsc.ca	37	22	36627504	36627504	+	Missense_Mutation	SNP	T	T	C	rs188431982		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	APOL2	NM_030882	exon4	c.A19G	p.I7V	.	.	249	7	177	0	T|0.998;C|0.002	90
APOPT1	84334	bcgsc.ca	37	14	104056610	104056610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_032374	exon5	c.A608G	p.K203R	.	.	63	4	82	0	.	.
AQP8	343	bcgsc.ca	37	16	25228586	25228586	+	Missense_Mutation	SNP	G	G	A	rs61733055	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AQP8	NM_001169	exon2	c.G80A	p.R27Q	.	.	296	11	275	3	G|0.995;A|0.005	155
AQR	9716	bcgsc.ca	37	15	35166077	35166077	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AQR	NM_014691	exon30	c.A3549G	p.E1183E	.	.	156	7	188	0	.	135
ARFGEF1	10565	bcgsc.ca	37	8	68169995	68169995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARFGEF1	NM_006421	exon17	c.T2498C	p.M833T	.	.	164	6	254	0	.	294
ARHGAP10	79658	bcgsc.ca	37	4	148786030	148786030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARHGAP10	NM_024605	exon6	c.T520C	p.F174L	.	.	147	5	204	2	.	229
ARHGAP10	79658	bcgsc.ca	37	4	148887909	148887909	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARHGAP10	NM_024605	exon18	c.A1635G	p.P545P	.	.	252	6	287	2	.	229
ARHGAP12	94134	bcgsc.ca	37	10	32141503	32141503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARHGAP12	NM_001270696	exon6	c.A1112G	p.Q371R	.	.	220	6	268	0	.	227
ARHGAP18	93663	bcgsc.ca	37	6	129899686	129899686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARHGAP18	NM_033515	exon15	c.A1964G	p.E655G	.	.	210	6	196	1	.	230
ARHGAP31	57514	bcgsc.ca	37	3	119132708	119132708	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARHGAP31	NM_020754	exon12	c.A1932G	p.E644E	.	.	157	5	167	0	.	92
ARHGEF12	23365	bcgsc.ca	37	11	120349039	120349039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARHGEF12	NM_015313	exon37	c.T3707C	p.I1236T	.	.	100	8	114	10	.	661
ARL5C	390790	bcgsc.ca	37	17	37317566	37317566	+	Silent	SNP	C	C	A	rs11653423	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARL5C	NM_001143968	exon4	c.G294T	p.R98R	.	.	50	4	43	0	C|0.933;A|0.067	68
ARMC9	80210	bcgsc.ca	37	2	232141360	232141360	+	Missense_Mutation	SNP	A	A	G	rs113569367		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARMC9	NM_025139	exon15	c.A1346G	p.Q449R	.	.	167	6	100	0	A|0.500;G|0.500	91
ARNTL2	56938	bcgsc.ca	37	12	27521244	27521244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARNTL2	NM_001248003	exon2	c.C114A	p.S38R	.	.	123	6	86	1	.	92
ARSH	347527	bcgsc.ca	37	X	2947361	2947361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ARSH	NM_001011719	exon8	c.C1273T	p.H425Y	.	.	60	4	48	0	.	130
ASAH1	427	bcgsc.ca	37	8	17927380	17927380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ASAH1	NM_004315	exon4	c.T272C	p.V91A	.	.	62	4	110	0	.	90
ASAP2	8853	bcgsc.ca	37	2	9528536	9528536	+	Missense_Mutation	SNP	G	G	C	rs2715860	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ASAP2	NM_001135191	exon22	c.G2244C	p.E748D	.	.	197	9	167	1	G|0.539;C|0.460	90
ATAD3C	219293	bcgsc.ca	37	1	1386090	1386090	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001039211	exon1	c.G27A	p.A9A	.	.	147	9	145	3	.	.
ATCAY	85300	bcgsc.ca	37	19	3905464	3905464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATCAY	NM_033064	exon4	c.C169T	p.H57Y	.	.	137	6	111	0	.	67
ATMIN	23300	bcgsc.ca	37	16	81078081	81078081	+	Missense_Mutation	SNP	A	A	G	rs36040615	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATMIN	NM_015251	exon4	c.A1978G	p.T660A	.	.	130	6	132	5	A|0.981;G|0.019	68
ATN1	1822	ucsc.edu	37	12	7047122	7047122	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATN1	NM_001007026	exon6	c.G2409A	p.V803V	.	.	38	4	21	0	.	139
ATP10A	57194	bcgsc.ca	37	15	25924539	25924539	+	Silent	SNP	T	T	C	rs1047700	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP10A	NM_024490	exon21	c.A4449G	p.Q1483Q	.	.	79	6	54	0	T|0.749;C|0.251	139
ATP10B	23120	bcgsc.ca	37	5	160047852	160047852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP10B	NM_025153	exon15	c.A1918G	p.T640A	.	.	97	5	83	1	.	72
ATP10D	57205	bcgsc.ca	37	4	47514685	47514685	+	Missense_Mutation	SNP	C	C	T	rs33995001	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP10D	NM_020453	exon2	c.C128T	p.T43I	.	.	178	8	128	1	C|0.623;T|0.377	93
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160106761	160106761	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP1A2	NM_000702	exon20	c.A2780T	p.Q927L	.	.	286	52	116	0	.	518
ATP2A1	487	bcgsc.ca	37	16	28898954	28898954	+	Missense_Mutation	SNP	A	A	G	rs143777158	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP2A1	NM_004320	exon8	c.A839G	p.N280S	.	.	189	8	182	5	A|0.995;G|0.005	93
ATP6	0	broad.mit.edu	37	MT	8701	8701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000361899	exon1	c.A175G	p.T59A	.	.	182	18	139	2	.	.
ATRIP	84126	bcgsc.ca	37	3	48495738	48495738	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATRIP	NM_130384	exon4	c.A591G	p.A197A	.	.	144	6	139	0	.	23
ATRIP	84126	bcgsc.ca	37	3	48498706	48498706	+	Missense_Mutation	SNP	C	C	T	rs35240314	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATRIP	NM_130384	exon5	c.C719T	p.P240L	.	.	207	16	188	1	C|0.960;T|0.040	23
ATXN2	6311	bcgsc.ca	37	12	111990761	111990761	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATXN2	NM_002973	exon4	c.A849G	p.Q283Q	.	.	73	4	106	0	.	136
AVL9	23080	bcgsc.ca	37	7	32598656	32598656	+	Silent	SNP	C	C	T	rs2290214	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AVL9	NM_015060	exon10	c.C795T	p.S265S	.	.	156	13	183	2	C|0.781;T|0.219	90
AXIN1	8312	bcgsc.ca	37	16	338183	338183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	AXIN1	NM_003502	exon11	c.A2528C	p.D843A	.	.	85	5	87	1	.	684
B4GALNT2	124872	bcgsc.ca	37	17	47246092	47246092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	B4GALNT2	NM_153446	exon10	c.A1325G	p.E442G	.	.	214	12	161	12	.	154
BACH2	60468	bcgsc.ca	37	6	90642412	90642412	+	Silent	SNP	C	C	T	rs147649326	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BACH2	NM_021813	exon9	c.G2241A	p.A747A	.	.	66	6	46	0	C|0.999;T|0.001	231
BAZ1B	9031	hgsc.bcm.edu;bcgsc.ca	37	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	.	.	214	12	269	0	.	159
BCAS1	8537	bcgsc.ca	37	20	52612549	52612549	+	Missense_Mutation	SNP	C	C	T	rs6022903	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BCAS1	NM_003657	exon5	c.G764A	p.G255E	.	.	290	7	180	0	C|0.863;T|0.137	652
BCOR	54880	bcgsc.ca	37	X	39932236	39932236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BCOR	NM_001123385	exon4	c.A2363G	p.N788S	.	.	76	4	88	0	.	229
BDP1	55814	bcgsc.ca	37	5	70809169	70809169	+	Missense_Mutation	SNP	A	A	G	rs1698063	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BDP1	NM_018429	exon19	c.A4405G	p.K1469E	.	.	327	10	313	5	A|0.595;G|0.405	92
BDP1	55814	bcgsc.ca	37	5	70835466	70835466	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BDP1	NM_018429	exon28	c.A6012G	p.E2004E	.	.	97	4	97	0	.	92
BEGAIN	57596	bcgsc.ca	37	14	101010204	101010204	+	Silent	SNP	T	T	C	rs4073549	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BEGAIN	NM_020836	exon5	c.A342G	p.S114S	.	.	77	7	101	0	T|0.915;C|0.085	68
BIRC6	57448	bcgsc.ca	37	2	32640396	32640396	+	Silent	SNP	A	A	G	rs34417238	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BIRC6	NM_016252	exon10	c.A2037G	p.L679L	.	.	206	9	214	2	A|0.957;G|0.043	233
BNC2	54796	bcgsc.ca	37	9	16435714	16435714	+	Silent	SNP	T	T	C	rs3739715	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BNC2	NM_017637	exon6	c.A2478G	p.L826L	.	.	138	8	120	2	T|0.904;C|0.096	92
BPTF	2186	bcgsc.ca	37	17	65822320	65822320	+	Missense_Mutation	SNP	C	C	G	rs73351760	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BPTF	NM_004459	exon1	c.C480G	p.D160E	.	.	143	6	139	1	C|0.961;G|0.039	94
BPTF	2186	bcgsc.ca	37	17	65924524	65924524	+	Silent	SNP	A	A	G	rs73338705	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BPTF	NM_004459	exon18	c.A6183G	p.P2061P	.	.	466	13	345	7	A|0.976;G|0.024	94
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1472640	1472640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BRSK2	NM_001256630	exon15	c.C1673T	p.S558L	.	.	50	20	43	0	.	333
C10orf90	118611	bcgsc.ca	37	10	128150060	128150060	+	Silent	SNP	C	C	A	rs61746086	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C10orf90	NM_001004298	exon5	c.G1629T	p.S543S	.	.	208	7	203	4	A|0.008;C|0.992;T|0.000	92
C11orf93	120376	bcgsc.ca	37	11	111178803	111178803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001271458	exon5	c.T397C	p.S133P	.	.	94	6	83	1	.	.
C16orf62	57020	bcgsc.ca	37	16	19619531	19619531	+	Silent	SNP	G	G	A	rs34693771	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C16orf62	NM_020314	exon10	c.G1083A	p.T361T	.	.	199	10	266	1	G|0.980;A|0.020	69
C16orf96	342346	bcgsc.ca	37	16	4644441	4644441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001145011	exon13	c.T2957C	p.L986P	.	.	89	5	70	0	.	.
C17orf53	78995	bcgsc.ca	37	17	42225541	42225541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C17orf53	NM_001171251	exon3	c.A370G	p.R124G	.	.	146	5	112	0	.	90
C17orf74	201243	bcgsc.ca	37	17	7330449	7330449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C17orf74	NM_175734	exon3	c.A1139G	p.E380G	.	.	85	7	79	5	.	90
C17orf99	100141515	bcgsc.ca	37	17	76160275	76160275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001163075	exon4	c.T470C	p.I157T	.	.	188	11	125	4	.	.
C19orf25	148223	bcgsc.ca	37	19	1478786	1478786	+	Silent	SNP	G	G	T	rs142040381		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_152482	exon2	c.C117A	p.I39I	.	.	129	6	91	0	G|0.989;T|0.011	.
C19orf38	255809	bcgsc.ca	37	19	10973854	10973854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001136482	exon6	c.T514C	p.F172L	.	.	161	5	135	0	.	.
C1orf127	148345	bcgsc.ca	37	1	11008341	11008341	+	Silent	SNP	G	G	A	rs10864483	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C1orf127	NM_001170754	exon12	c.C1851T	p.C617C	.	.	60	4	43	0	G|0.844;A|0.156	91
C1orf65	164127	bcgsc.ca	37	1	223567282	223567282	+	Silent	SNP	T	T	G	rs116340148	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C1orf65	NM_152610	exon1	c.T465G	p.T155T	.	.	92	9	42	1	T|0.982;G|0.018	91
C2orf16	84226	bcgsc.ca	37	2	27801403	27801403	+	Missense_Mutation	SNP	C	C	G	rs1919125	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C2orf16	NM_032266	exon1	c.C1964G	p.T655S	.	.	351	15	360	5	C|0.376;G|0.624	67
C2orf76	130355	bcgsc.ca	37	2	120078731	120078731	+	Silent	SNP	A	A	G	rs7566912	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C2orf76	NM_001017927	exon4	c.T183C	p.Y61Y	.	.	470	18	651	8	A|0.920;G|0.080	90
C3	718	bcgsc.ca	37	19	6713201	6713201	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C3	NM_000064	exon9	c.A1002G	p.S334S	.	.	92	4	112	0	.	95
C4orf19	55286	bcgsc.ca	37	4	37592270	37592270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C4orf19	NM_018302	exon3	c.A593G	p.N198S	.	.	148	5	111	0	.	90
C6orf118	168090	bcgsc.ca	37	6	165713917	165713917	+	Missense_Mutation	SNP	C	C	T	rs17852379	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C6orf118	NM_144980	exon3	c.G812A	p.G271E	.	.	83	4	95	0	C|0.874;T|0.126	90
C6orf132	647024	bcgsc.ca	37	6	42110171	42110171	+	Missense_Mutation	SNP	C	C	G	rs9688934	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001164446	exon1	c.G12C	p.K4N	.	.	297	9	176	1	C|0.882;G|0.118	.
C6orf136	221545	hgsc.bcm.edu	37	6	30615170	30615170	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C6orf136	NM_001161376	exon1	c.C162T	p.S54S	.	.	16	5	1	0	.	90
C7orf43	55262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99752913	99752913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C7orf43	NM_018275	exon10	c.C1561A	p.Q521K	.	.	31	8	29	0	.	90
C8orf22	492307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	49985398	49985398	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001256598	exon2	c.C9T	p.S3S	.	.	158	40	190	0	.	.
C8orf34	116328	hgsc.bcm.edu;bcgsc.ca	37	8	69434170	69434170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C8orf34	NM_052958	exon6	c.G902T	p.W301L	.	.	95	7	128	0	.	153
CA1	759	bcgsc.ca	37	8	86250518	86250518	+	Silent	SNP	G	G	A	rs77342877	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CA1	NM_001164830	exon2	c.C198T	p.S66S	.	.	235	12	204	1	G|0.983;A|0.017	91
CACNA1G	8913	bcgsc.ca	37	17	48653675	48653675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CACNA1G	NM_001256360	exon8	c.A1912G	p.T638A	.	.	115	5	52	1	.	67
CACNA1H	8912	bcgsc.ca	37	16	1269029	1269029	+	Silent	SNP	T	T	C	rs2738893	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CACNA1H	NM_021098	exon34	c.T5947C	p.L1983L	.	.	114	14	97	1	T|0.278;C|0.722	67
CACNA2D1	781	bcgsc.ca	37	7	81667468	81667468	+	Silent	SNP	C	C	T	rs2229952	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CACNA2D1	NM_000722	exon11	c.G963A	p.A321A	.	.	243	22	270	2	C|0.965;T|0.035	96
CACNA2D2	9254	bcgsc.ca	37	3	50402371	50402371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CACNA2D2	NM_001174051	exon38	c.A3260G	p.Q1087R	.	.	135	6	96	0	.	278
CALCA	796	ucsc.edu;bcgsc.ca	37	11	14990543	14990543	+	Missense_Mutation	SNP	G	G	T	rs5241	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CALCA	NM_001741	exon4	c.C228A	p.S76R	.	.	75	7	75	2	G|0.946;T|0.054	514
CALU	813	bcgsc.ca	37	7	128388648	128388648	+	Missense_Mutation	SNP	G	G	A	rs2290228	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CALU	NM_001199671	exon3	c.G35A	p.R12Q	.	.	136	11	166	2	G|0.841;A|0.159	90
CALY	50632	ucsc.edu;bcgsc.ca	37	10	135140403	135140403	+	Silent	SNP	G	G	A	rs142159746	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CALY	NM_015722	exon4	c.C339T	p.C113C	.	.	93	10	70	2	G|0.994;A|0.006	68
CAMKK2	10645	bcgsc.ca	37	12	121686464	121686464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CAMKK2	NM_172214	exon14	c.T1397C	p.V466A	.	.	146	5	110	0	.	450
CAMTA2	23125	bcgsc.ca	37	17	4883450	4883450	+	Silent	SNP	T	T	C	rs11078541	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CAMTA2	NM_001171167	exon9	c.A1236G	p.T412T	.	.	68	5	68	0	T|0.926;C|0.074	91
CAPN5	726	bcgsc.ca	37	11	76830079	76830079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CAPN5	NM_004055	exon9	c.A1171G	p.I391V	.	.	77	4	68	0	.	90
CARD11	84433	bcgsc.ca	37	7	2951824	2951824	+	Silent	SNP	A	A	G	rs2301921	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CARD11	NM_032415	exon23	c.T3126C	p.I1042I	.	.	188	17	190	3	A|0.922;G|0.078	870
CARD11	84433	ucsc.edu;bcgsc.ca	37	7	2957005	2957005	+	Silent	SNP	T	T	C	rs3735124	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CARD11	NM_032415	exon20	c.A2622G	p.P874P	.	.	58	6	53	0	T|0.634;C|0.366	870
CARD14	79092	bcgsc.ca	37	17	78177668	78177668	+	Missense_Mutation	SNP	G	G	A	rs34822755	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CARD14	NM_024110	exon16	c.G2267A	p.C756Y	.	.	274	8	164	3	G|0.991;A|0.009	231
CASP3	836	bcgsc.ca	37	4	185552285	185552285	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CASP3	NM_004346	exon7	c.T510C	p.C170C	.	.	79	4	99	0	.	659
CASQ2	845	bcgsc.ca	37	1	116269619	116269619	+	Missense_Mutation	SNP	T	T	C	rs28730716	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CASQ2	NM_001232	exon6	c.A731G	p.H244R	.	.	73	7	57	0	T|0.975;C|0.025	91
CCDC106	29903	bcgsc.ca	37	19	56162776	56162776	+	Silent	SNP	C	C	T	rs2287791	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC106	NM_013301	exon5	c.C441T	p.S147S	.	.	220	8	129	2	C|0.189;T|0.811	90
CCDC136	64753	bcgsc.ca	37	7	128450249	128450249	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC136	NM_022742	exon12	c.A1857G	p.Q619Q	.	.	79	5	111	0	.	24
CCDC146	57639	bcgsc.ca	37	7	76797103	76797103	+	Missense_Mutation	SNP	G	G	A	rs143373193		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC146	NM_020879	exon2	c.G118A	p.D40N	.	.	2338	52	3255	44	G|0.937;A|0.063	70
CCDC146	57639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	76922297	76922297	+	Missense_Mutation	SNP	A	A	C	rs77337116	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC146	NM_020879	exon18	c.A2444C	p.N815T	.	.	41	5	50	0	A|0.998;C|0.002	70
CCDC154	645811	bcgsc.ca	37	16	1486737	1486737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001143980	exon12	c.C1366T	p.H456Y	.	.	62	4	65	1	.	.
CCDC170	80129	bcgsc.ca	37	6	151865805	151865805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_025059	exon4	c.C542T	p.P181L	.	.	97	5	133	0	.	.
CCDC63	160762	bcgsc.ca	37	12	111342471	111342471	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC63	NM_152591	exon11	c.T1422C	p.A474A	.	.	115	5	107	1	.	134
CCDC64B	146439	bcgsc.ca	37	16	3080786	3080786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001103175	exon3	c.A526G	p.R176G	.	.	44	4	51	0	.	.
CCDC64B	146439	bcgsc.ca	37	16	3085335	3085335	+	Missense_Mutation	SNP	G	G	C	rs7204908	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001103175	exon1	c.C163G	p.Q55E	.	.	88	10	71	2	G|0.592;C|0.408	.
CCDC88A	55704	bcgsc.ca	37	2	55561944	55561944	+	Missense_Mutation	SNP	T	T	A	rs112409178	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC88A	NM_018084	exon15	c.A2013T	p.E671D	.	.	232	15	248	3	T|0.988;A|0.012	94
CCDC93	54520	bcgsc.ca	37	2	118704400	118704400	+	Missense_Mutation	SNP	C	C	T	rs138026247	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCDC93	NM_019044	exon16	c.G1283A	p.R428H	.	.	470	19	485	7	C|0.999;T|0.001	154
CCHCR1	54535	bcgsc.ca	37	6	31122330	31122330	+	Silent	SNP	G	G	A	rs130077	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCHCR1	NM_001105564	exon4	c.C744T	p.N248N	.	.	254	7	118	1	G|0.860;A|0.140	91
CCPG1	9236	bcgsc.ca	37	15	55653031	55653031	+	Silent	SNP	A	A	G	rs501231	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CCPG1	NM_020739	exon8	c.T940C	p.L314L	.	.	268	11	332	4	A|0.519;G|0.481	91
CCSER2	54462	bcgsc.ca	37	10	86131059	86131059	+	Missense_Mutation	SNP	A	A	G	rs3814205	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_018999	exon2	c.A251G	p.N84S	.	.	184	6	211	3	A|0.798;G|0.202	.
CD109	135228	bcgsc.ca	37	6	74493432	74493432	+	Missense_Mutation	SNP	A	A	C	rs10455097	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD109	NM_133493	exon19	c.A2108C	p.Y703S	.	.	134	6	151	1	A|0.454;C|0.546	155
CD207	50489	bcgsc.ca	37	2	71060936	71060936	+	Missense_Mutation	SNP	G	G	C	rs17718987	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD207	NM_015717	exon3	c.C406G	p.Q136E	.	.	456	16	431	6	G|0.840;C|0.160	46
CD2BP2	10421	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	30365266	30365266	+	Missense_Mutation	SNP	G	G	A	rs149209324	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD2BP2	NM_006110	exon4	c.C331T	p.R111W	.	.	58	6	46	0	G|0.999;A|0.001	91
CD300LD	100131439	bcgsc.ca	37	17	72584764	72584764	+	Missense_Mutation	SNP	C	C	T	rs783239	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD300LD	NM_001115152	exon2	c.G265A	p.V89M	.	.	324	13	303	3	C|0.680;T|0.320	22
CD4	920	bcgsc.ca	37	12	6925294	6925294	+	Missense_Mutation	SNP	T	T	C	rs11064419	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD4	NM_000616	exon6	c.T680C	p.F227S	.	.	56	6	37	0	T|0.981;C|0.019	90
CD5	921	bcgsc.ca	37	11	60870050	60870050	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD5	NM_014207	exon1	c.G18A	p.L6L	.	.	81	5	50	0	.	91
CD72	971	bcgsc.ca	37	9	35612978	35612978	+	Missense_Mutation	SNP	G	G	A	rs34791102	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CD72	NM_001782	exon6	c.C701T	p.P234L	.	.	167	13	172	4	G|0.929;A|0.071	90
CDH23	64072	bcgsc.ca	37	10	73553177	73553177	+	Silent	SNP	C	C	T	rs41281332		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDH23	NM_022124	exon46	c.C6492T	p.I2164I	.	.	90	7	62	0	C|0.976;T|0.024	563
CDH5	1003	bcgsc.ca	37	16	66420952	66420952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDH5	NM_001795	exon3	c.T451C	p.F151L	.	.	71	4	93	0	.	525
CDHR3	222256	bcgsc.ca	37	7	105664944	105664944	+	Missense_Mutation	SNP	G	G	A	rs11505886		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDHR3	NM_152750	exon15	c.G2194A	p.V732I	.	.	219	13	222	1	G|1.000;A|0.000	23
CDK20	23552	bcgsc.ca	37	9	90588903	90588903	+	Silent	SNP	C	C	T	rs665983	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDK20	NM_178432	exon2	c.G162A	p.E54E	.	.	101	6	59	2	C|0.268;T|0.732	547
CDK20	23552	ucsc.edu;bcgsc.ca	37	9	90588970	90588970	+	Missense_Mutation	SNP	C	C	A	rs28364935	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDK20	NM_178432	exon2	c.G95T	p.C32F	.	.	53	7	33	0	C|0.916;A|0.084	547
CDK5RAP2	55755	bcgsc.ca	37	9	123170667	123170667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDK5RAP2	NM_018249	exon31	c.A4684G	p.K1562E	.	.	135	5	104	3	.	229
CDT1	81620	broad.mit.edu	37	16	88872472	88872472	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CDT1	NM_030928	exon6	c.G876A	p.L292L	.	.	19	4	12	0	.	227
CELA3B	23436	bcgsc.ca	37	1	22313103	22313103	+	Missense_Mutation	SNP	C	C	G	rs114895362	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CELA3B	NM_007352	exon7	c.C722G	p.A241G	.	.	296	21	252	7	C|0.984;G|0.016	91
CELSR1	9620	ucsc.edu;bcgsc.ca	37	22	46786315	46786315	+	Missense_Mutation	SNP	T	T	C	rs4044210	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CELSR1	NM_014246	exon17	c.A6319G	p.I2107V	.	.	36	6	44	0	T|0.693;C|0.307	525
CEP128	145508	bcgsc.ca	37	14	81251255	81251255	+	Missense_Mutation	SNP	T	T	C	rs327463	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CEP128	NM_152446	exon14	c.A2195G	p.H732R	.	.	340	9	342	2	T|0.655;C|0.345	91
CEP152	22995	bcgsc.ca	37	15	49061195	49061195	+	Silent	SNP	C	C	A	rs61737684		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CEP152	NM_014985	exon14	c.G1866T	p.L622L	.	.	182	6	215	2	C|0.996;A|0.004	70
CEP70	80321	bcgsc.ca	37	3	138218994	138218994	+	Missense_Mutation	SNP	T	T	C	rs35340237	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CEP70	NM_024491	exon16	c.A1610G	p.N537S	.	.	401	17	377	5	T|0.869;C|0.131	69
CEP78	84131	bcgsc.ca	37	9	80877858	80877858	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CEP78	NM_001098802	exon12	c.A1419G	p.E473E	.	.	61	4	87	0	.	69
CES1P2	0	bcgsc.ca	37	16	55776359	55776359	+	RNA	SNP	A	A	G	rs74994079	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	53	8	38	0	A|0.990;G|0.010	.
CES5AP1	649264	bcgsc.ca	37	22	23712647	23712647	+	RNA	SNP	A	A	C	rs5996529	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	63	5	56	0	A|0.374;C|0.626	.
CFLAR	8837	bcgsc.ca	37	2	202025621	202025621	+	Silent	SNP	A	A	G	rs1594	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CFLAR	NM_003879	exon9	c.A1260G	p.P420P	.	.	112	7	104	2	A|0.549;G|0.451	227
CFTR	1080	bcgsc.ca	37	7	117282644	117282644	+	Silent	SNP	A	A	G	rs1800130	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CFTR	NM_000492	exon23	c.A3870G	p.P1290P	.	.	95	8	110	1	A|0.927;G|0.073	518
CHD9	80205	bcgsc.ca	37	16	53265366	53265366	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHD9	NM_025134	exon9	c.A2322G	p.E774E	.	.	208	6	213	0	.	272
CHFR	55743	bcgsc.ca	37	12	133424681	133424681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHFR	NM_001161344	exon14	c.A1673G	p.D558G	.	.	150	5	106	0	.	227
CHGB	1114	bcgsc.ca	37	20	5903388	5903388	+	Missense_Mutation	SNP	A	A	C	rs881118	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHGB	NM_001819	exon4	c.A598C	p.N200H	.	.	175	6	147	1	A|0.887;C|0.113	96
CHI3L2	1117	bcgsc.ca	37	1	111783981	111783981	+	Silent	SNP	G	G	A	rs7542034	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHI3L2	NM_004000	exon9	c.G951A	p.T317T	.	.	86	6	68	0	G|0.933;A|0.067	514
CHIC1	53344	bcgsc.ca	37	X	72797253	72797253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHIC1	NM_001039840	exon2	c.A307G	p.S103G	.	.	81	4	110	1	.	130
CHRD	8646	bcgsc.ca	37	3	184103903	184103903	+	Missense_Mutation	SNP	A	A	C	rs16858780	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHRD	NM_003741	exon15	c.A1888C	p.M630L	.	.	161	6	125	2	A|0.751;C|0.249	93
CHST10	9486	bcgsc.ca	37	2	101010198	101010198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CHST10	NM_004854	exon7	c.A580G	p.R194G	.	.	18	3	23	0	.	91
CILP2	148113	bcgsc.ca	37	19	19656615	19656615	+	Silent	SNP	C	C	T	rs61744761	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CILP2	NM_153221	exon8	c.C3261T	p.G1087G	.	.	225	10	110	0	C|0.845;T|0.155	91
CILP	8483	bcgsc.ca	37	15	65502070	65502070	+	Silent	SNP	C	C	T	rs141650348	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CILP	NM_003613	exon2	c.G24A	p.V8V	.	.	116	7	122	1	C|0.999;T|0.001	97
CILP	8483	bcgsc.ca	37	15	65502072	65502072	+	Missense_Mutation	SNP	C	C	T	rs147074739	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CILP	NM_003613	exon2	c.G22A	p.V8M	.	.	112	7	118	1	C|0.999;T|0.001	97
CKAP2L	150468	bcgsc.ca	37	2	113514159	113514159	+	Missense_Mutation	SNP	T	T	A	rs17042341	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CKAP2L	NM_152515	exon4	c.A789T	p.R263S	.	.	311	14	301	4	T|0.919;A|0.081	90
CKAP2L	150468	bcgsc.ca	37	2	113514180	113514180	+	Silent	SNP	T	T	C	rs17042342	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CKAP2L	NM_152515	exon4	c.A768G	p.V256V	.	.	287	13	285	3	T|0.919;C|0.081	90
CLASP2	23122	bcgsc.ca	37	3	33614778	33614778	+	Silent	SNP	T	T	G	rs147939384	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CLASP2	NM_015097	exon26	c.A2550C	p.A850A	.	.	318	14	317	3	T|0.999;G|0.001	93
CLCN1	1180	bcgsc.ca	37	7	143016928	143016928	+	Silent	SNP	C	C	T	rs6962852	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CLCN1	NM_000083	exon2	c.C261T	p.T87T	.	.	82	6	111	1	C|0.646;T|0.354	156
CLEC2D	29121	bcgsc.ca	37	12	9833628	9833628	+	Silent	SNP	C	C	T	rs3764021	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CLEC2D	NM_001004419	exon2	c.C171T	p.S57S	.	.	135	5	141	2	C|0.519;T|0.481	90
CLIC3	9022	bcgsc.ca	37	9	139889671	139889671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CLIC3	NM_004669	exon4	c.T343C	p.F115L	.	.	80	4	79	1	.	90
CLK1	1195	bcgsc.ca	37	2	201718655	201718655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CLK1	NM_001162407	exon12	c.T1408C	p.Y470H	.	.	71	4	88	0	.	784
CLTCL1	8218	bcgsc.ca	37	22	19187302	19187302	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CLTCL1	NM_001835	exon24	c.T3816C	p.C1272C	.	.	84	4	84	0	.	230
CNDP2	55748	bcgsc.ca	37	18	72178130	72178130	+	Missense_Mutation	SNP	G	G	A	rs34916325	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CNDP2	NM_018235	exon6	c.G539A	p.R180Q	.	.	156	7	140	1	G|0.971;A|0.029	93
CNN3	1266	bcgsc.ca	37	1	95367773	95367773	+	Silent	SNP	A	A	G	rs2228344	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CNN3	NM_001839	exon4	c.T288C	p.Y96Y	.	.	111	10	128	1	A|0.943;G|0.057	90
CNTN1	1272	bcgsc.ca	37	12	41333189	41333189	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CNTN1	NM_001256063	exon12	c.T1281C	p.A427A	.	.	165	5	151	0	.	1149
CNTNAP3	79937	bcgsc.ca	37	9	39140553	39140553	+	Silent	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CNTNAP3	NM_033655	exon12	c.C1839A	p.G613G	.	.	766	17	649	5	.	91
COL16A1	1307	bcgsc.ca	37	1	32151735	32151735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL16A1	NM_001856	exon28	c.G1841A	p.G614E	.	.	131	9	145	1	.	98
COL19A1	1310	bcgsc.ca	37	6	70866609	70866609	+	Silent	SNP	C	C	T	rs2229799	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL19A1	NM_001858	exon34	c.C2286T	p.G762G	.	.	210	14	248	1	C|0.481;T|0.519	156
COL24A1	255631	bcgsc.ca	37	1	86590578	86590578	+	Missense_Mutation	SNP	T	T	G	rs10493784	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL24A1	NM_152890	exon3	c.A1441C	p.M481L	.	.	73	5	111	1	T|0.548;G|0.028;C|0.019;A|0.405	94
COL25A1	84570	bcgsc.ca	37	4	109745336	109745336	+	Silent	SNP	T	T	G	rs7689008	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL25A1	NM_001256074	exon32	c.A1848C	p.G616G	.	.	187	6	228	4	T|0.649;G|0.351	92
COL4A2	1284	bcgsc.ca	37	13	111111235	111111235	+	Missense_Mutation	SNP	G	G	A	rs7990383	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL4A2	NM_001846	exon22	c.G1550A	p.R517K	.	.	96	5	51	0	G|0.479;A|0.521	95
COL4A2	1284	bcgsc.ca	37	13	111158874	111158874	+	Silent	SNP	A	A	G	rs445348	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL4A2	NM_001846	exon46	c.A4515G	p.P1505P	.	.	203	10	98	2	A|0.236;G|0.764	95
COL4A5	1287	bcgsc.ca	37	X	107868981	107868981	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL4A5	NM_000495	exon35	c.A3063G	p.G1021G	.	.	67	4	69	0	.	133
COL6A2	1292	bcgsc.ca	37	21	47538960	47538960	+	Missense_Mutation	SNP	G	G	A	rs2839110	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL6A2	NM_058175	exon14	c.G1196A	p.S399N	.	.	214	7	160	3	G|0.256;A|0.744	515
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238249681	238249681	+	Silent	SNP	G	G	A	rs145136426	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL6A3	NM_004369	exon38	c.C7878T	p.S2626S	.	.	196	36	189	0	G|1.000;A|0.000	526
COL7A1	1294	ucsc.edu;bcgsc.ca	37	3	48625266	48625266	+	Silent	SNP	T	T	C	rs1264194	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL7A1	NM_000094	exon21	c.A2817G	p.P939P	.	.	138	12	94	2	T|0.266;C|0.734	160
COL8A1	1295	ucsc.edu;bcgsc.ca	37	3	99514182	99514182	+	Silent	SNP	C	C	T	rs61753448	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COL8A1	NM_001850	exon5	c.C1437T	p.L479L	.	.	31	6	32	0	C|0.996;T|0.004	90
COLQ	8292	bcgsc.ca	37	3	15497475	15497475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COLQ	NM_005677	exon15	c.G1126A	p.G376R	.	.	75	6	61	0	.	90
COX10	1352	bcgsc.ca	37	17	13980350	13980350	+	Missense_Mutation	SNP	G	G	A	rs2072279	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	COX10	NM_001303	exon3	c.G476A	p.R159Q	.	.	137	8	165	2	G|0.516;A|0.484	226
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9540	9540	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000362079	exon1	c.T334C	p.L112L	.	.	175	18	98	1	.	.
CPA6	57094	bcgsc.ca	37	8	68423789	68423789	+	Missense_Mutation	SNP	T	T	C	rs199809258		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPA6	NM_020361	exon4	c.A419G	p.H140R	.	.	89	5	110	0	T|0.999;C|0.000	92
CPNE2	221184	bcgsc.ca	37	16	57155044	57155044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPNE2	NM_152727	exon8	c.T721C	p.F241L	.	.	73	5	91	0	.	91
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	125639753	125639753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPXM2	NM_198148	exon2	c.G377T	p.R126L	.	.	203	61	207	0	.	92
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	8605903	8605903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPZ	NM_001014447	exon4	c.C697T	p.Q233X	.	.	88	46	55	0	.	93
CRLF1	9244	bcgsc.ca	37	19	18710535	18710535	+	Silent	SNP	G	G	A	rs2238647	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CRLF1	NM_004750	exon2	c.C237T	p.N79N	.	.	144	6	83	0	G|0.781;A|0.219	514
CROCCP3	114819	broad.mit.edu	37	1	16812970	16812970	+	RNA	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	48	8	49	1	.	.
CROCCP3	114819	broad.mit.edu	37	1	16812982	16812982	+	RNA	SNP	A	A	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	45	8	44	2	.	.
CRSP8P	0	bcgsc.ca	37	5	79647634	79647634	+	RNA	SNP	G	G	C	rs146237039	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	167	9	136	1	G|0.994;C|0.006	.
CSGALNACT1	55790	bcgsc.ca	37	8	19362720	19362720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CSGALNACT1	NM_018371	exon4	c.T626C	p.F209S	.	.	98	4	114	0	.	70
CSGALNACT2	55454	bcgsc.ca	37	10	43662529	43662529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CSGALNACT2	NM_018590	exon6	c.C1237G	p.P413A	.	.	338	8	322	0	.	69
CSMD1	64478	bcgsc.ca	37	8	4277512	4277512	+	Silent	SNP	G	G	A	rs181813168	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CSMD1	NM_033225	exon3	c.C378T	p.F126F	.	.	83	5	95	2	G|0.999;A|0.001	86
CSMD2	114784	bcgsc.ca	37	1	34083129	34083129	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CSMD2	NM_052896	exon38	c.T5796C	p.S1932S	.	.	54	4	52	1	.	103
CSMD3	114788	bcgsc.ca	37	8	113651106	113651106	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CSMD3	NM_198123	exon21	c.A3345G	p.E1115E	.	.	94	4	60	0	.	1132
CTNND1	1500	bcgsc.ca	37	11	57569400	57569400	+	Silent	SNP	C	C	T	rs112713987		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CTNND1	NM_001085461	exon7	c.C1152T	p.S384S	.	.	80	6	96	0	C|0.999;T|0.001	272
CTSB	1508	bcgsc.ca	37	8	11706581	11706581	+	Silent	SNP	T	T	G	rs13332	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CTSB	NM_147780	exon7	c.A420C	p.T140T	.	.	86	7	71	0	T|0.241;G|0.456;C|0.186;A|0.117	90
CTTN	2017	bcgsc.ca	37	11	70279759	70279759	+	Missense_Mutation	SNP	G	G	A	rs56162978	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CTTN	NM_005231	exon17	c.G1451A	p.S484N	.	.	196	8	178	2	G|0.941;A|0.059	227
CUL1	8454	bcgsc.ca	37	7	148486903	148486903	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CUL1	NM_003592	exon15	c.T1659C	p.F553F	.	.	120	6	111	0	.	226
CUL7	9820	bcgsc.ca	37	6	43005729	43005729	+	Silent	SNP	C	C	T	rs61437700	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CUL7	NM_001168370	exon26	c.G5046A	p.K1682K	.	.	77	7	45	3	C|0.970;T|0.030	229
CYB5R2	51700	bcgsc.ca	37	11	7690873	7690873	+	Missense_Mutation	SNP	C	C	T	rs61733056	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYB5R2	NM_016229	exon4	c.G241A	p.V81M	.	.	68	4	81	0	C|0.935;T|0.065	90
CYFIP2	26999	bcgsc.ca	37	5	156747773	156747773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYFIP2	NM_001037332	exon15	c.A1634G	p.K545R	.	.	68	4	65	0	.	22
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143994118	143994118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP11B2	NM_000498	exon8	c.C1226T	p.S409L	.	.	106	15	92	0	.	90
CYP27C1	339761	bcgsc.ca	37	2	127953054	127953054	+	Silent	SNP	A	A	C	rs7568070	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP27C1	NM_001001665	exon5	c.T576G	p.T192T	.	.	138	5	126	0	A|0.696;C|0.304	90
CYP2J2	1573	bcgsc.ca	37	1	60392336	60392336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP2J2	NM_000775	exon1	c.T83C	p.F28S	.	.	96	5	89	0	.	91
CYP39A1	51302	bcgsc.ca	37	6	46563817	46563817	+	Missense_Mutation	SNP	A	A	T	rs7761731	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP39A1	NM_016593	exon8	c.T972A	p.N324K	.	.	473	11	357	4	A|0.591;T|0.409	91
CYP3A43	64816	bcgsc.ca	37	7	99463558	99463558	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP3A43	NM_022820	exon13	c.T1449C	p.I483I	.	.	171	5	229	0	.	92
CYP4V2	285440	bcgsc.ca	37	4	187117176	187117176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP4V2	NM_207352	exon3	c.A347G	p.K116R	.	.	80	4	100	0	.	90
CYP4V2	285440	bcgsc.ca	37	4	187117214	187117214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP4V2	NM_207352	exon3	c.C385T	p.P129S	.	.	91	4	113	0	.	90
CYTB	0	bcgsc.ca	37	MT	15043	15043	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000361789	exon1	c.G297A	p.G99G	.	.	169	17	104	2	.	.
DCLRE1B	64858	bcgsc.ca	37	1	114454632	114454632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DCLRE1B	NM_022836	exon4	c.A1418G	p.Q473R	.	.	88	6	109	0	.	227
DCLRE1C	64421	bcgsc.ca	37	10	14977562	14977562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DCLRE1C	NM_001033855	exon6	c.T364C	p.F122L	.	.	90	4	88	0	.	228
DCTN1	1639	bcgsc.ca	37	2	74597937	74597937	+	Missense_Mutation	SNP	G	G	T	rs13420401	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DCTN1	NM_004082	exon10	c.C859A	p.L287M	.	.	121	7	89	2	G|0.954;T|0.046	95
DCTN5	84516	bcgsc.ca	37	16	23672560	23672560	+	Silent	SNP	A	A	T	rs11545871	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DCTN5	NM_032486	exon4	c.A306T	p.A102A	.	.	372	16	437	7	A|0.906;T|0.094	226
DDX46	9879	bcgsc.ca	37	5	134118658	134118658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DDX46	NM_014829	exon9	c.A1069G	p.M357V	.	.	312	7	400	0	.	227
DENND3	22898	bcgsc.ca	37	8	142170884	142170884	+	Silent	SNP	C	C	T	rs2289001	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DENND3	NM_014957	exon9	c.C1110T	p.F370F	.	.	184	11	132	0	C|0.724;T|0.276	91
DENND4C	55667	bcgsc.ca	37	9	19346791	19346791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DENND4C	NM_017925	exon22	c.A3877G	p.S1293G	.	.	98	4	89	0	.	92
DENND5B	160518	bcgsc.ca	37	12	31632549	31632549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DENND5B	NM_144973	exon3	c.A878G	p.E293G	.	.	85	4	51	1	.	24
DFFA	1676	bcgsc.ca	37	1	10521750	10521750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DFFA	NM_004401	exon6	c.A793G	p.K265E	.	.	176	6	175	1	.	90
DGCR6L	85359	hgsc.bcm.edu;bcgsc.ca	37	22	20302911	20302911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DGCR6L	NM_033257	exon4	c.G461A	p.S154N	.	.	134	10	91	0	.	90
DGKZ	8525	bcgsc.ca	37	11	46388188	46388188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DGKZ	NM_001105540	exon2	c.G382T	p.A128S	.	.	73	5	48	0	.	676
DISC1	27185	bcgsc.ca	37	1	231906589	231906589	+	Silent	SNP	C	C	T	rs2492367	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DISC1	NM_001164537	exon7	c.C1503T	p.I501I	.	.	334	15	200	1	C|0.856;T|0.144	91
DLC1	10395	bcgsc.ca	37	8	13357436	13357436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLC1	NM_182643	exon2	c.A145G	p.T49A	.	.	65	4	97	0	.	657
DLEC1	9940	bcgsc.ca	37	3	38162024	38162024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLEC1	NM_007337	exon34	c.A4790G	p.Q1597R	.	.	209	8	204	0	.	161
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38150949	38150949	+	Silent	SNP	T	T	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLEC1	NM_007337	exon22	c.T3156A	p.P1052P	.	.	78	11	65	0	.	161
DLEU2L	79469	bcgsc.ca	37	1	64015202	64015202	+	RNA	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLEU2L	.	.	.	.	.	.	201	7	263	3	.	68
DLG1	1739	bcgsc.ca	37	3	196771602	196771602	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLG1	NM_001204386	exon26	c.2573-2A>G	.	.	.	214	6	291	1	.	118
DMXL1	1657	bcgsc.ca	37	5	118437631	118437631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DMXL1	NM_005509	exon3	c.T215C	p.I72T	.	.	559	17	620	0	.	92
DNA2	1763	bcgsc.ca	37	10	70218878	70218878	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001080449	exon5	c.T702C	p.P234P	.	.	159	5	169	1	.	.
DNAH10	196385	bcgsc.ca	37	12	124288264	124288264	+	Missense_Mutation	SNP	G	G	A	rs77491573	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH10	NM_207437	exon16	c.G2317A	p.V773I	.	.	122	6	124	1	G|0.882;A|0.118	95
DNAH10	196385	bcgsc.ca	37	12	124288275	124288275	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH10	NM_207437	exon16	c.T2328C	p.I776I	.	.	135	7	125	2	.	95
DNAH11	8701	bcgsc.ca	37	7	21781781	21781781	+	Silent	SNP	C	C	T	rs111301826		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH11	.	.	.	.	.	.	58	4	61	0	C|0.995;T|0.005	146
DNAH12	201625	bcgsc.ca	37	3	57414097	57414097	+	Missense_Mutation	SNP	T	T	A	rs17793014	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH12	NM_178504	exon35	c.A5262T	p.K1754N	.	.	146	10	182	1	T|0.739;A|0.261	47
DNAH17	8632	bcgsc.ca	37	17	76447617	76447617	+	Silent	SNP	A	A	G	rs34002770	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH17	NM_173628	exon66	c.T10668C	p.D3556D	.	.	295	12	206	1	A|0.970;G|0.030	142
DNAH17	8632	bcgsc.ca	37	17	76528591	76528591	+	Silent	SNP	C	C	T	rs11868065	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH17	NM_173628	exon20	c.G3087A	p.P1029P	.	.	194	16	136	1	C|0.509;T|0.491	142
DNAH2	146754	bcgsc.ca	37	17	7719907	7719907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH2	NM_020877	exon63	c.A9748G	p.M3250V	.	.	71	4	88	0	.	102
DNAH8	1769	bcgsc.ca	37	6	38905803	38905803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH8	NM_001206927	exon78	c.A11617G	p.T3873A	.	.	204	7	140	0	.	615
DNAH9	1770	bcgsc.ca	37	17	11556248	11556248	+	Missense_Mutation	SNP	C	C	T	rs16945138	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH9	NM_001372	exon14	c.C2524T	p.R842W	.	.	74	5	110	1	C|0.941;T|0.059	168
DNAH9	1770	bcgsc.ca	37	17	11757556	11757556	+	Silent	SNP	C	C	G	rs12449553	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAH9	NM_001372	exon50	c.C9744G	p.P3248P	.	.	100	8	101	1	C|0.605;G|0.395	168
DNAJA3	9093	ucsc.edu;bcgsc.ca	37	16	4496973	4496973	+	Silent	SNP	T	T	A	rs2304633	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAJA3	NM_001135110	exon8	c.T1083A	p.G361G	.	.	113	13	197	3	T|0.310;A|0.690	291
DNAJC13	23317	bcgsc.ca	37	3	132165346	132165346	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAJC13	NM_015268	exon3	c.T96C	p.T32T	.	.	127	5	141	0	.	272
DNAJC13	23317	bcgsc.ca	37	3	132175421	132175421	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAJC13	NM_015268	exon11	c.A1176G	p.Q392Q	.	.	201	6	199	1	.	272
DNAJC27	51277	bcgsc.ca	37	2	25190127	25190127	+	Silent	SNP	G	G	A	rs6749438	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAJC27	NM_016544	exon2	c.C123T	p.F41F	.	.	300	17	352	4	G|0.859;A|0.141	228
DNAJC30	84277	bcgsc.ca	37	7	73097238	73097238	+	Silent	SNP	G	G	A	rs1569062	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAJC30	NM_032317	exon1	c.C516T	p.Y172Y	.	.	61	8	50	0	G|0.763;A|0.237	90
DNAJC5B	85479	bcgsc.ca	37	8	66992737	66992737	+	Silent	SNP	G	G	A	rs7006209	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNAJC5B	NM_033105	exon5	c.G459A	p.V153V	.	.	209	7	222	1	G|0.909;A|0.091	226
DNM2	1785	bcgsc.ca	37	19	10904480	10904480	+	Silent	SNP	C	C	T	rs112238216	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNM2	NM_001005361	exon8	c.C1077T	p.G359G	.	.	194	8	163	1	C|0.977;T|0.023	471
DNMBP	23268	bcgsc.ca	37	10	101659819	101659819	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DNMBP	NM_015221	exon7	c.T2559C	p.P853P	.	.	171	6	221	1	.	233
DOC2A	8448	bcgsc.ca	37	16	30020346	30020346	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOC2A	NM_003586	exon5	c.A498G	p.T166T	.	.	210	7	241	3	.	92
DOCK10	55619	bcgsc.ca	37	2	225662586	225662586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOCK10	NM_014689	exon42	c.A4607G	p.K1536R	.	.	233	6	212	1	.	92
DOCK4	9732	bcgsc.ca	37	7	111512127	111512127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOCK4	NM_014705	exon20	c.T1946C	p.L649P	.	.	111	6	124	1	.	26
DOCK5	80005	bcgsc.ca	37	8	25166404	25166404	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOCK5	NM_024940	exon12	c.A1155G	p.K385K	.	.	69	4	101	0	.	71
DOCK5	80005	bcgsc.ca	37	8	25237889	25237889	+	Silent	SNP	C	C	T	rs142846654	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOCK5	NM_024940	exon39	c.C4005T	p.Y1335Y	.	.	109	8	162	1	C|0.998;T|0.002	71
DOCK7	85440	bcgsc.ca	37	1	63021553	63021553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOCK7	NM_001271999	exon21	c.T2539C	p.S847P	.	.	155	7	197	0	.	92
DOCK8	81704	bcgsc.ca	37	9	379795	379795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOCK8	NM_203447	exon21	c.A2465G	p.E822G	.	.	99	5	102	0	.	517
DOPEY1	23033	bcgsc.ca	37	6	83861745	83861745	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DOPEY1	NM_015018	exon29	c.A6048G	p.E2016E	.	.	125	5	112	0	.	155
DPY19L2P3	442524	broad.mit.edu	37	7	29727139	29727139	+	RNA	SNP	C	C	T	rs4118143	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	51	10	66	0	C|0.832;T|0.168	.
DSPP	1834	bcgsc.ca	37	4	88536880	88536880	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DSPP	NM_014208	exon5	c.C3066T	p.S1022S	.	.	167	16	129	6	.	90
DST	667	bcgsc.ca	37	6	56505063	56505063	+	Silent	SNP	A	A	G	rs2144407	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DST	NM_001723	exon4	c.T757C	p.L253L	.	.	234	19	173	2	A|0.854;C|0.000;G|0.146	523
DTX2	113878	bcgsc.ca	37	7	76131650	76131650	+	Silent	SNP	G	G	A	rs6958774	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DTX2	NM_001102594	exon8	c.G1266A	p.A422A	.	.	105	6	108	1	G|0.707;A|0.293	524
DUSP13	51207	bcgsc.ca	37	10	76854564	76854564	+	Missense_Mutation	SNP	C	C	T	rs3088142	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DUSP13	NM_001007273	exon6	c.G746A	p.C249Y	.	.	76	6	53	0	C|0.430;T|0.570	226
DUSP21	63904	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	44703615	44703615	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DUSP21	NM_022076	exon1	c.G237A	p.S79S	.	.	127	97	83	1	.	289
DYNC1H1	1778	bcgsc.ca	37	14	102461145	102461145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYNC1H1	NM_001376	exon13	c.A3292G	p.T1098A	.	.	124	5	145	1	.	98
DYNC1H1	1778	bcgsc.ca	37	14	102467962	102467962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYNC1H1	NM_001376	exon21	c.A4486G	p.K1496E	.	.	122	5	149	0	.	98
DYNC1I2	1781	bcgsc.ca	37	2	172549354	172549354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYNC1I2	NM_001271789	exon3	c.A176G	p.E59G	.	.	246	7	227	0	.	91
DYNC2H1	79659	bcgsc.ca	37	11	103173884	103173884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYNC2H1	NM_001080463	exon77	c.A11179G	p.I3727V	.	.	86	4	133	0	.	68
DYNC2LI1	51626	bcgsc.ca	37	2	44023891	44023891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYNC2LI1	NM_001193464	exon8	c.A614G	p.K205R	.	.	266	7	259	1	.	91
DYRK4	8798	bcgsc.ca	37	12	4700352	4700352	+	Silent	SNP	G	G	A	rs35827006	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYRK4	NM_003845	exon3	c.G6A	p.P2P	.	.	137	6	109	0	G|0.957;A|0.043	360
DYSF	8291	bcgsc.ca	37	2	71797385	71797385	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DYSF	NM_001130982	exon29	c.T3048C	p.D1016D	.	.	126	5	121	0	.	158
E2F5	1875	bcgsc.ca	37	8	86114443	86114443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	E2F5	NM_001083588	exon2	c.A296G	p.E99G	.	.	103	5	89	0	.	415
ECI2	10455	bcgsc.ca	37	6	4119492	4119492	+	Silent	SNP	T	T	C	rs10708	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ECI2	NM_206836	exon8	c.A813G	p.P271P	.	.	153	8	114	1	T|0.962;C|0.038	90
EFCAB2	84288	bcgsc.ca	37	1	245246981	245246981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EFCAB2	NM_001143943	exon6	c.A364G	p.T122A	.	.	177	6	129	0	.	90
EFHB	151651	bcgsc.ca	37	3	19975215	19975215	+	Missense_Mutation	SNP	C	C	A	rs17795400	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EFHB	NM_144715	exon1	c.G296T	p.G99V	.	.	418	11	414	8	C|0.796;A|0.203	22
EFHD2	79180	ucsc.edu	37	1	15752379	15752379	+	Silent	SNP	G	G	A	rs34866686	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EFHD2	NM_024329	exon2	c.G321A	p.G107G	.	.	65	6	76	1	G|0.968;A|0.032	90
EHBP1L1	254102	bcgsc.ca	37	11	65348539	65348539	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EHBP1L1	NM_001099409	exon7	c.A645G	p.R215R	.	.	87	4	92	0	.	69
EHHADH	1962	bcgsc.ca	37	3	184910693	184910693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EHHADH	NM_001966	exon7	c.A1493G	p.E498G	.	.	273	7	255	0	.	93
EIF3A	8661	bcgsc.ca	37	10	120820272	120820272	+	Missense_Mutation	SNP	G	G	A	rs139877301		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EIF3A	NM_003750	exon9	c.C1312T	p.R438C	.	.	107	5	115	0	G|1.000;A|0.000	226
EIF3D	8664	bcgsc.ca	37	22	36914944	36914944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EIF3D	NM_003753	exon9	c.A725G	p.Q242R	.	.	73	5	65	1	.	69
EIF3M	10480	bcgsc.ca	37	11	32610571	32610571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EIF3M	NM_006360	exon4	c.T328C	p.F110L	.	.	138	6	122	0	.	155
ELK1	2002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47496430	47496430	+	Silent	SNP	C	C	T	rs143440705		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ELK1	NM_001114123	exon6	c.G1170A	p.P390P	.	.	122	15	91	0	C|1.000;T|0.000	660
ELK2AP	2003	bcgsc.ca	37	14	106135198	106135198	+	RNA	SNP	A	A	G	rs113651110	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	133	5	171	0	A|0.903;G|0.097	.
EML5	161436	bcgsc.ca	37	14	89082190	89082190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EML5	NM_183387	exon43	c.T5906C	p.V1969A	.	.	321	7	398	0	.	93
EML6	400954	bcgsc.ca	37	2	55155452	55155452	+	Silent	SNP	A	A	T	rs61910689	byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001039753	exon26	c.A3678T	p.G1226G	.	.	122	7	79	0	A|0.996;T|0.004	.
ENPP2	5168	bcgsc.ca	37	8	120594802	120594802	+	Silent	SNP	A	A	G	rs4871364	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ENPP2	NM_006209	exon19	c.T1740C	p.H580H	.	.	283	13	248	2	A|0.735;G|0.265	292
ENTPD7	57089	bcgsc.ca	37	10	101445619	101445619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ENTPD7	NM_020354	exon6	c.T619C	p.S207P	.	.	183	6	208	0	.	91
EPB49	2039	bcgsc.ca	37	8	21927018	21927018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EPB49	NM_001978	exon6	c.T383C	p.F128S	.	.	70	4	68	0	.	90
EPPK1	83481	bcgsc.ca	37	8	144941940	144941940	+	Silent	SNP	G	G	A	rs73715514	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EPPK1	NM_031308	exon1	c.C5482T	p.L1828L	.	.	146	12	151	2	G|0.952;A|0.048	25
EPX	8288	bcgsc.ca	37	17	56276940	56276940	+	Missense_Mutation	SNP	A	A	C	rs35750729	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EPX	NM_000502	exon9	c.A1322C	p.K441T	.	.	76	7	45	1	A|0.928;C|0.072	92
ERAP1	51752	bcgsc.ca	37	5	96098910	96098910	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERAP1	NM_016442	exon20	c.A2841G	p.T947T	.	.	144	6	135	0	.	70
ERBB3	2065	bcgsc.ca	37	12	56487906	56487906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERBB3	NM_001982	exon14	c.A1637G	p.E546G	.	.	48	4	53	0	.	1403
ERBB4	2066	bcgsc.ca	37	2	212537963	212537963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERBB4	NM_001042599	exon14	c.A1642G	p.N548D	.	.	72	4	54	0	.	1461
ERC1	23085	bcgsc.ca	37	12	1219375	1219375	+	Silent	SNP	T	T	A	rs36113377	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERC1	NM_178039	exon5	c.T1179A	p.S393S	.	.	214	10	206	2	T|0.673;A|0.327	660
ERC1	23085	bcgsc.ca	37	12	1372284	1372284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERC1	NM_178040	exon14	c.A2572G	p.M858V	.	.	46	4	63	0	.	660
ERCC3	2071	bcgsc.ca	37	2	128028989	128028989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERCC3	NM_000122	exon12	c.T1868C	p.L623P	.	.	96	5	69	1	.	723
ERI1	90459	bcgsc.ca	37	8	8869199	8869199	+	Silent	SNP	T	T	G	rs9650616	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ERI1	NM_153332	exon3	c.T435G	p.P145P	.	.	98	10	150	3	T|0.605;G|0.395	68
ESYT1	23344	bcgsc.ca	37	12	56528207	56528207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ESYT1	NM_001184796	exon15	c.G1657A	p.V553M	.	.	115	5	130	0	.	95
EXOC3L4	91828	bcgsc.ca	37	14	103566774	103566774	+	Missense_Mutation	SNP	C	C	T	rs61730322	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EXOC3L4	NM_001077594	exon1	c.C218T	p.T73M	.	.	104	5	93	1	C|0.963;T|0.037	23
EXT2	2132	bcgsc.ca	37	11	44129594	44129594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	EXT2	NM_000401	exon2	c.T431C	p.L144P	.	.	161	5	150	0	.	524
F2RL1	2150	ucsc.edu	37	5	76128521	76128521	+	Missense_Mutation	SNP	G	G	A	rs616235	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	F2RL1	NM_005242	exon2	c.G89A	p.S30N	.	.	136	16	146	2	G|0.019;A|0.981	226
F5	2153	bcgsc.ca	37	1	169512120	169512120	+	Silent	SNP	G	G	A	rs6016	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	F5	NM_000130	exon13	c.C2208T	p.I736I	.	.	399	22	210	4	G|0.758;A|0.242	157
FA2H	79152	bcgsc.ca	37	16	74748120	74748120	+	Missense_Mutation	SNP	T	T	C	rs200545714	alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FA2H	NM_024306	exon7	c.A1087G	p.T363A	.	.	92	4	123	3	T|0.999;G|0.000	90
FAHD2A	51011	bcgsc.ca	37	2	96076719	96076719	+	Silent	SNP	C	C	T	rs60804719	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAHD2A	NM_016044	exon5	c.C630T	p.T210T	.	.	265	9	212	1	C|0.992;T|0.008	91
FAM101B	359845	bcgsc.ca	37	17	293070	293070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	160	6	125	1	.	.
FAM104B	90736	ucsc.edu	37	X	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	rs113263757		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM104B	NM_001166699	exon3	c.C238T	p.Q80X	.	.	70	7	43	4	.	130
FAM114A1	92689	bcgsc.ca	37	4	38916631	38916631	+	Silent	SNP	T	T	C	rs4261994	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM114A1	NM_138389	exon8	c.T882C	p.D294D	.	.	159	8	109	0	T|0.939;C|0.061	69
FAM114A1	92689	bcgsc.ca	37	4	38933900	38933900	+	Silent	SNP	G	G	T	rs10014670	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM114A1	NM_138389	exon12	c.G1368T	p.A456A	.	.	480	19	419	7	G|0.969;T|0.031	69
FAM118A	55007	bcgsc.ca	37	22	45728370	45728370	+	Missense_Mutation	SNP	G	G	A	rs6007594	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM118A	NM_017911	exon6	c.G716A	p.R239H	.	.	408	11	346	5	G|0.536;A|0.464	90
FAM122C	159091	bcgsc.ca	37	X	133988160	133988160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM122C	NM_001170779	exon7	c.T482C	p.L161P	.	.	168	7	106	1	.	130
FAM150B	285016	bcgsc.ca	37	2	283134	283134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001002919	exon5	c.A430G	p.S144G	.	.	125	6	119	1	.	.
FAM160A1	729830	bcgsc.ca	37	4	152571327	152571327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001109977	exon11	c.C2134T	p.P712S	.	.	62	4	70	0	.	.
FAM179A	165186	bcgsc.ca	37	2	29240783	29240783	+	Missense_Mutation	SNP	A	A	G	rs1109758	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM179A	NM_199280	exon10	c.A1321G	p.I441V	.	.	105	6	67	0	A|0.599;G|0.401	26
FAM184B	27146	bcgsc.ca	37	4	17660082	17660082	+	Missense_Mutation	SNP	C	C	T	rs1860596	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM184B	NM_015688	exon10	c.G1928A	p.R643H	.	.	127	8	131	0	C|0.379;T|0.621	23
FAM186B	84070	bcgsc.ca	37	12	49994785	49994785	+	Missense_Mutation	SNP	G	G	A	rs143179540	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM186B	NM_032130	exon4	c.C638T	p.T213M	.	.	243	13	222	3	G|0.984;A|0.016	91
FAM196B	100131897	bcgsc.ca	37	5	169310213	169310213	+	Missense_Mutation	SNP	A	A	C	rs17646221	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001129891	exon2	c.T690G	p.S230R	.	.	154	6	151	2	A|0.596;C|0.404	.
FAM200A	221786	bcgsc.ca	37	7	99145845	99145845	+	Silent	SNP	C	C	T	rs10238965	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM200A	NM_145111	exon2	c.G186A	p.L62L	.	.	358	15	462	3	C|0.566;T|0.434	90
FAM205B	389715	bcgsc.ca	37	9	34835217	34835217	+	RNA	SNP	C	C	T	rs3934948	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	1070	35	1035	15	C|0.897;T|0.103	.
FAM210A	125228	bcgsc.ca	37	18	13682066	13682066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001098801	exon3	c.A11G	p.N4S	.	.	149	7	155	0	.	.
FAM214A	56204	bcgsc.ca	37	15	52901887	52901887	+	Silent	SNP	A	A	G	rs75512966	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_019600	exon6	c.T1224C	p.L408L	.	.	90	5	101	0	A|0.981;G|0.019	.
FAM57B	83723	bcgsc.ca	37	16	30038121	30038121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM57B	NM_031478	exon3	c.T253C	p.F85L	.	.	64	4	71	1	.	90
FAM83B	222584	bcgsc.ca	37	6	54806582	54806582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAM83B	NM_001010872	exon5	c.A2813G	p.E938G	.	.	215	7	129	1	.	96
FAT1	2195	bcgsc.ca	37	4	187541181	187541181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FAT1	NM_005245	exon10	c.T6559C	p.Y2187H	.	.	92	5	91	0	.	34
FBLN7	129804	bcgsc.ca	37	2	112940454	112940454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBLN7	NM_153214	exon6	c.T757C	p.C253R	.	.	60	4	44	0	.	69
FBN2	2201	bcgsc.ca	37	5	127671189	127671189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBN2	NM_001999	exon29	c.A3805G	p.S1269G	.	.	319	8	335	0	.	146
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	127873149	127873149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBN2	NM_001999	exon1	c.G148T	p.A50S	.	.	51	16	17	0	.	146
FBN3	84467	bcgsc.ca	37	19	8137041	8137041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBN3	NM_032447	exon62	c.A7979G	p.D2660G	.	.	58	4	50	0	.	100
FBXL18	80028	bcgsc.ca	37	7	5540769	5540769	+	Silent	SNP	A	A	C	rs6953642	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBXL18	NM_024963	exon3	c.T1131G	p.T377T	.	.	93	10	63	1	A|0.079;C|0.921	651
FBXO16	157574	bcgsc.ca	37	8	28321153	28321153	+	Silent	SNP	A	A	G	rs7822086	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBXO16	NM_172366	exon4	c.T318C	p.P106P	.	.	117	10	147	2	A|0.932;G|0.068	227
FBXO16	157574	bcgsc.ca	37	8	28321174	28321174	+	Silent	SNP	G	G	A	rs7837853	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBXO16	NM_172366	exon4	c.C297T	p.Y99Y	.	.	128	8	132	0	G|0.949;A|0.051	227
FBXO2	26232	ucsc.edu	37	1	11710561	11710561	+	Missense_Mutation	SNP	T	T	G	rs9614	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBXO2	NM_012168	exon2	c.A353C	p.K118T	.	.	38	4	26	0	T|0.788;G|0.212	226
FCGBP	8857	bcgsc.ca	37	19	40406019	40406019	+	Silent	SNP	G	G	A	rs2355719	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FCGBP	NM_003890	exon10	c.C4827T	p.C1609C	.	.	881	33	576	11	G|0.732;A|0.268	98
FGD6	55785	bcgsc.ca	37	12	95502303	95502303	+	Silent	SNP	G	G	A	rs11107896	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FGD6	NM_018351	exon10	c.C3168T	p.H1056H	.	.	196	6	186	1	G|0.906;A|0.094	137
FGD6	55785	bcgsc.ca	37	12	95535305	95535305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FGD6	NM_018351	exon6	c.A2696G	p.D899G	.	.	140	5	127	0	.	137
FGD6	55785	bcgsc.ca	37	12	95604664	95604664	+	Silent	SNP	A	A	G	rs4762289	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FGD6	NM_018351	exon2	c.T396C	p.V132V	.	.	250	10	224	2	A|0.949;G|0.051	137
FGF1	2246	bcgsc.ca	37	5	141974915	141974915	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FGF1	NM_001257209	exon4	c.T408C	p.P136P	.	.	249	6	239	2	.	947
FKBP6	8468	ucsc.edu;bcgsc.ca	37	7	72754645	72754645	+	Silent	SNP	G	G	A	rs56301507	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FKBP6	NM_003602	exon6	c.G594A	p.L198L	.	.	68	8	64	0	G|0.937;A|0.063	180
FLII	2314	mdanderson.org	37	17	18148485	18148485	+	Silent	SNP	G	G	A	rs7498	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FLII	NM_002018	exon30	c.C3777T	p.H1259H	.	.	57	12	65	1	G|0.728;A|0.272	91
FLJ31813	0	bcgsc.ca	37	10	51821329	51821329	+	RNA	SNP	G	G	C	rs7072520	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	2439	50	2361	33	.	.
FLJ31813	0	bcgsc.ca	37	10	51821343	51821343	+	RNA	SNP	G	G	A	rs7072524	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	2566	55	2506	35	.	.
FLNB	2317	bcgsc.ca	37	3	58106975	58106975	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FLNB	NM_001457	exon20	c.A2871G	p.E957E	.	.	152	5	125	1	.	593
FLNC	2318	bcgsc.ca	37	7	128480123	128480123	+	Silent	SNP	C	C	A	rs2291563	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FLNC	NM_001127487	exon9	c.C1458A	p.P486P	.	.	52	4	62	0	C|0.838;A|0.149	141
FLNC	2318	bcgsc.ca	37	7	128487749	128487749	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FLNC	NM_001458	exon25	c.4289-2A>G	.	.	.	60	4	85	1	.	141
FNDC4	64838	ucsc.edu;bcgsc.ca	37	2	27716888	27716888	+	Silent	SNP	G	G	T	rs61734464	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FNDC4	NM_022823	exon4	c.C363A	p.I121I	.	.	123	14	117	0	G|0.986;T|0.014	90
FOXP4	116113	bcgsc.ca	37	6	41558043	41558043	+	Silent	SNP	C	C	T	rs34992960	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	FOXP4,NS,carcinoma,+2	FOXP4	NM_001012426	exon12	c.C1392T	p.A464A	.	.	152	12	78	0	C|0.986;T|0.014	289
FRAS1	80144	bcgsc.ca	37	4	79432455	79432455	+	Silent	SNP	A	A	C	rs3749488	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FRAS1	NM_025074	exon64	c.A9808C	p.R3270R	.	.	492	14	382	7	A|0.629;C|0.371	68
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FRG1B	.	.	.	.	.	.	1229	57	905	15	.	22
FRMD4A	55691	bcgsc.ca	37	10	13708245	13708245	+	Silent	SNP	G	G	A	rs7906126	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FRMD4A	NM_018027	exon18	c.C1455T	p.D485D	.	.	437	16	323	4	G|0.969;A|0.031	229
FRMD7	90167	bcgsc.ca	37	X	131234660	131234660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FRMD7	NM_194277	exon2	c.T142C	p.C48R	.	.	71	4	60	0	.	228
FRYL	285527	bcgsc.ca	37	4	48523170	48523170	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FRYL	NM_015030	exon55	c.T7584C	p.S2528S	.	.	409	9	313	0	.	69
FSIP2	401024	bcgsc.ca	37	2	186671350	186671350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FSIP2	NM_173651	exon17	c.A17584G	p.N5862D	.	.	220	6	290	0	.	90
FTCD	10841	bcgsc.ca	37	21	47557206	47557206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FTCD	NM_206965	exon13	c.T1486C	p.F496L	.	.	68	4	51	0	.	92
FXR1	8087	bcgsc.ca	37	3	180630500	180630500	+	Silent	SNP	C	C	T	rs1805578	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FXR1	NM_001013438	exon1	c.C27T	p.R9R	.	.	477	21	359	6	C|0.961;T|0.039	153
GAB1	2549	bcgsc.ca	37	4	144381520	144381520	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GAB1	NM_207123	exon9	c.T1773C	p.S591S	.	.	137	5	176	0	.	1146
GABBR2	9568	bcgsc.ca	37	9	101056122	101056122	+	Missense_Mutation	SNP	T	T	C	rs10985765	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GABBR2	NM_005458	exon18	c.A2605G	p.T869A	.	.	620	13	726	8	T|0.756;C|0.244	518
GABBR2	9568	bcgsc.ca	37	9	101340271	101340271	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GABBR2	NM_005458	exon2	c.T405C	p.C135C	.	.	113	5	90	1	.	518
GABRR1	2569	bcgsc.ca	37	6	89926966	89926966	+	Missense_Mutation	SNP	T	T	C	rs12200969	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GABRR1	NM_001256703	exon1	c.A76G	p.M26V	.	.	246	12	214	2	T|0.651;C|0.349	91
GAL3ST1	9514	bcgsc.ca	37	22	30951612	30951612	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GAL3ST1	NM_004861	exon4	c.G600A	p.P200P	.	.	91	7	65	1	.	90
GALNTL5	168391	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	.	.	203	12	264	0	.	92
GAS2L2	246176	bcgsc.ca	37	17	34073338	34073338	+	Missense_Mutation	SNP	C	C	T	rs144191508		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GAS2L2	NM_139285	exon6	c.G1178A	p.R393Q	.	.	190	7	164	0	C|0.999;T|0.001	227
GBP1	2633	bcgsc.ca	37	1	89522544	89522544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GBP1	NM_002053	exon7	c.A1148G	p.E383G	.	.	159	6	210	0	.	92
GBP7	388646	bcgsc.ca	37	1	89616192	89616192	+	Missense_Mutation	SNP	T	T	C	rs56686060	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GBP7	NM_207398	exon6	c.A692G	p.Q231R	.	.	325	9	321	5	T|0.981;C|0.019	92
GCN1L1	10985	bcgsc.ca	37	12	120575056	120575056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GCN1L1	NM_006836	exon50	c.A6731G	p.N2244S	.	.	115	5	116	0	.	94
GCNT2	2651	bcgsc.ca	37	6	10586929	10586929	+	Missense_Mutation	SNP	A	A	G	rs594495	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GCNT2	NM_145655	exon1	c.A707G	p.H236R	.	.	153	7	138	0	A|0.980;G|0.020	92
GCNT2	2651	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10529561	10529561	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GCNT2	NM_145649	exon3	c.A417G	p.A139A	.	.	111	40	69	1	.	92
GDAP2	54834	bcgsc.ca	37	1	118420663	118420663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GDAP2	NM_017686	exon13	c.T1414C	p.F472L	.	.	190	6	241	0	.	92
GET4	51608	bcgsc.ca	37	7	930608	930608	+	Silent	SNP	G	G	A	rs11543223	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GET4	NM_015949	exon5	c.G510A	p.A170A	.	.	217	18	218	3	G|0.921;A|0.079	90
GIPC1	10755	bcgsc.ca	37	19	14589378	14589378	+	Silent	SNP	C	C	T	rs1127307	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GIPC1	NM_202468	exon8	c.G852A	p.A284A	.	.	118	6	95	0	T|0.165;G|0.201;C|0.564;A|0.070	226
GKN1	56287	bcgsc.ca	37	2	69207886	69207886	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GKN1	NM_019617	exon6	c.A531G	p.G177G	.	.	203	7	139	3	.	153
GLI1	2735	ucsc.edu	37	12	57859431	57859431	+	Silent	SNP	G	G	A	rs2228225	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GLI1	NM_005269	exon6	c.G576A	p.E192E	.	.	133	19	131	4	A|0.449;C|0.000;G|0.551	722
GLI4	2738	ucsc.edu;bcgsc.ca	37	8	144358819	144358819	+	Missense_Mutation	SNP	T	T	G	rs73378237	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GLI4	NM_138465	exon4	c.T976G	p.S326A	.	.	161	18	94	1	T|0.959;G|0.041	91
GLIS3	169792	bcgsc.ca	37	9	4286416	4286416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GLIS3	NM_001042413	exon2	c.A10G	p.R4G	.	.	60	4	55	0	.	91
GLP1R	2740	bcgsc.ca	37	6	39048491	39048491	+	Silent	SNP	A	A	C	rs1126476	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GLP1R	NM_002062	exon12	c.A1200C	p.I400I	.	.	327	10	164	2	A|0.489;C|0.511	659
GLS	2744	bcgsc.ca	37	2	191765360	191765360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GLS	NM_014905	exon4	c.T676C	p.S226P	.	.	145	5	133	2	.	92
GNB5	10681	bcgsc.ca	37	15	52418218	52418218	+	Silent	SNP	T	T	C	rs34059787	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GNB5	NM_016194	exon11	c.A936G	p.A312A	.	.	216	6	203	1	T|0.948;C|0.052	227
GOSR1	9527	bcgsc.ca	37	17	28819728	28819728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GOSR1	NM_004871	exon6	c.A472G	p.R158G	.	.	232	6	207	0	.	90
GOT1L1	137362	bcgsc.ca	37	8	37792628	37792628	+	Silent	SNP	G	G	A	rs28589845	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GOT1L1	NM_152413	exon8	c.C1035T	p.T345T	.	.	138	5	202	3	G|0.993;A|0.007	23
GPANK1	7918	bcgsc.ca	37	6	31630172	31630172	+	Silent	SNP	G	G	T	rs2295667	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	GPANK1,NS,carcinoma,-1	GPANK1	NM_001199238	exon4	c.C942A	p.T314T	.	.	332	13	193	6	G|0.976;T|0.024	91
GPATCH3	63906	bcgsc.ca	37	1	27224199	27224199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPATCH3	NM_022078	exon2	c.T469C	p.F157L	.	.	53	4	71	0	.	90
GPD1L	23171	bcgsc.ca	37	3	32180085	32180085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPD1L	NM_015141	exon3	c.A232G	p.M78V	.	.	130	5	148	1	.	90
GPR112	139378	bcgsc.ca	37	X	135429775	135429775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR112	NM_153834	exon6	c.A3910G	p.T1304A	.	.	206	6	177	2	.	183
GPR146	115330	bcgsc.ca	37	7	1097394	1097394	+	Silent	SNP	T	T	C	rs11767527	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR146	NM_138445	exon1	c.T243C	p.P81P	.	.	39	12	31	3	T|0.898;C|0.102	91
GPR153	387509	bcgsc.ca	37	1	6311414	6311414	+	Silent	SNP	G	G	A	rs141324744	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR153	NM_207370	exon4	c.C963T	p.D321D	.	.	146	5	123	0	G|0.998;A|0.002	514
GPR156	165829	bcgsc.ca	37	3	119962524	119962524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR156	NM_001168271	exon2	c.T196C	p.F66L	.	.	67	4	59	0	.	92
GPR173	54328	bcgsc.ca	37	X	53106865	53106865	+	Silent	SNP	C	C	T	rs11091720	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR173	NM_018969	exon2	c.C1062T	p.H354H	.	.	44	4	36	0	C|0.687;T|0.313	130
GPR173	54328	ucsc.edu;bcgsc.ca	37	X	53105890	53105890	+	Silent	SNP	G	G	A	rs17850567	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR173	NM_018969	exon2	c.G87A	p.L29L	.	.	75	7	46	0	G|0.869;A|0.131	130
GPR98	84059	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	90079720	90079720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GPR98	NM_032119	exon67	c.A13499C	p.H4500P	.	.	116	27	92	1	.	103
GRAMD1C	54762	bcgsc.ca	37	3	113655207	113655207	+	Silent	SNP	C	C	T	rs3765114	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRAMD1C	NM_017577	exon14	c.C1551T	p.N517N	.	.	168	5	169	0	C|0.756;T|0.244	93
GRAMD3	65983	bcgsc.ca	37	5	125696035	125696035	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRAMD3	NM_001146319	exon1	c.A12G	p.R4R	.	.	172	6	220	0	.	90
GRB7	2886	bcgsc.ca	37	17	37898909	37898909	+	Silent	SNP	A	A	C	rs36079893	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRB7	NM_001242442	exon3	c.A315C	p.P105P	.	.	108	6	78	0	A|0.886;C|0.114	848
GRHL1	29841	bcgsc.ca	37	2	10132262	10132262	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRHL1	NM_198182	exon11	c.G1449A	p.Q483Q	.	.	143	7	145	0	.	92
GRIK1	2897	bcgsc.ca	37	21	30963479	30963479	+	Missense_Mutation	SNP	T	T	A	rs200496108		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRIK1	NM_000830	exon10	c.A1318T	p.I440F	.	.	466	15	375	8	T|0.999;A|0.001	137
GRIN2B	2904	bcgsc.ca	37	12	13720040	13720040	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRIN2B	NM_000834	exon12	c.A2517G	p.E839E	.	.	137	5	103	0	.	231
GRK4	2868	bcgsc.ca	37	4	2993980	2993980	+	Silent	SNP	T	T	C	rs2515941	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRK4	NM_182982	exon4	c.T300C	p.D100D	.	.	194	6	167	2	T|0.639;C|0.361	507
GRK4	2868	bcgsc.ca	37	4	2994013	2994013	+	Silent	SNP	T	T	C	rs55646607	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GRK4	NM_182982	exon4	c.T333C	p.N111N	.	.	148	6	139	1	T|0.952;C|0.048	507
GTF2IRD1	9569	bcgsc.ca	37	7	73932560	73932560	+	Silent	SNP	A	A	G	rs17851629	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTF2IRD1	NM_001199207	exon5	c.A609G	p.E203E	.	.	66	8	60	2	A|0.744;G|0.256	94
GTF2IRD1	9569	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	73932488	73932488	+	Silent	SNP	C	C	G	rs112098981	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTF2IRD1	NM_001199207	exon5	c.C537G	p.A179A	.	.	91	9	74	0	C|0.996;G|0.004	94
GTF2IRD2P1	401375	bcgsc.ca	37	7	72657532	72657532	+	RNA	SNP	T	T	A	rs200897046		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	408	31	504	8	T|0.999;A|0.001	.
GTF3C5	9328	ucsc.edu	37	9	135932158	135932158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTF3C5	NM_001122823	exon11	c.A1277G	p.Q426R	.	.	42	4	51	0	.	90
GTPBP2	54676	bcgsc.ca	37	6	43594011	43594011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTPBP2	NM_019096	exon3	c.A350G	p.E117G	.	.	93	6	66	2	.	92
GTPBP8	29083	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	112711969	112711969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTPBP8	NM_014170	exon2	c.C433A	p.P145T	.	.	284	17	360	0	.	90
GTSE1	51512	bcgsc.ca	37	22	46719100	46719100	+	Missense_Mutation	SNP	C	C	G	rs6008684	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTSE1	NM_016426	exon8	c.C1446G	p.D482E	.	.	134	8	125	0	C|0.856;G|0.144	187
GUCY2F	2986	bcgsc.ca	37	X	108691384	108691384	+	Missense_Mutation	SNP	T	T	G	rs148768857	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GUCY2F	NM_001522	exon6	c.A1483C	p.N495H	.	.	69	4	55	0	T|0.987;G|0.013	540
HAP1	9001	bcgsc.ca	37	17	39881299	39881299	+	Missense_Mutation	SNP	G	G	A	rs34853043	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HAP1	NM_177977	exon11	c.C1514T	p.A505V	.	.	64	7	43	0	G|0.966;A|0.034	92
HAP1	9001	bcgsc.ca	37	17	39887770	39887770	+	Silent	SNP	G	G	A	rs116828637	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HAP1	NM_001079870	exon6	c.C1068T	p.L356L	.	.	297	14	250	4	G|0.983;A|0.017	92
HAPLN3	145864	ucsc.edu	37	15	89430506	89430506	+	Silent	SNP	C	C	T	rs3743395	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HAPLN3	NM_178232	exon2	c.G24A	p.P8P	.	.	130	14	85	1	C|0.770;T|0.230	90
HCAR3	8843	bcgsc.ca	37	12	123201156	123201156	+	Silent	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HCAR3	NM_006018	exon1	c.G129T	p.L43L	.	.	64	4	51	1	.	2
HCG4B	80868	bcgsc.ca	37	6	29894243	29894243	+	RNA	SNP	C	C	T	rs2074486	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	126	9	57	0	C|0.691;T|0.309	.
HCN1	348980	bcgsc.ca	37	5	45695802	45695802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HCN1	NM_021072	exon1	c.T394C	p.F132L	.	.	77	4	47	0	.	91
HCRTR1	3061	bcgsc.ca	37	1	32092525	32092525	+	Missense_Mutation	SNP	A	A	G	rs2271933	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HCRTR1	NM_001525	exon9	c.A1222G	p.I408V	.	.	33	4	44	0	A|0.531;G|0.469	523
HEATR1	55127	bcgsc.ca	37	1	236738188	236738188	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HEATR1	NM_018072	exon23	c.C3100T	p.L1034L	.	.	149	5	96	0	.	93
HERC1	8925	bcgsc.ca	37	15	63916051	63916051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HERC1	NM_003922	exon73	c.G13484T	p.R4495I	.	.	73	4	58	0	.	666
HHLA1	10086	bcgsc.ca	37	8	133092122	133092122	+	Missense_Mutation	SNP	C	C	G	rs16904585	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001145095	exon10	c.G768C	p.Q256H	.	.	998	22	822	11	C|0.984;G|0.016	.
HIP1	3092	bcgsc.ca	37	7	75176281	75176281	+	Missense_Mutation	SNP	C	C	T	rs191649785		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIP1	NM_005338	exon25	c.G2515A	p.V839M	.	.	113	7	109	1	C|0.999;T|0.000	1085
HIPK1	204851	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114500821	114500821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIPK1	NM_198268	exon8	c.A1889G	p.Q630R	.	.	229	95	229	1	.	361
HIPK2	28996	bcgsc.ca	37	7	139415775	139415775	+	Silent	SNP	G	G	C	rs7456421	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIPK2	NM_022740	exon2	c.C1059G	p.V353V	.	.	192	13	216	3	G|0.629;C|0.371	785
HIVEP2	3097	bcgsc.ca	37	6	143094339	143094339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIVEP2	NM_006734	exon5	c.A1537G	p.R513G	.	.	244	6	229	1	.	95
HIVEP3	59269	bcgsc.ca	37	1	41978837	41978837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIVEP3	NM_024503	exon8	c.A6055G	p.R2019G	.	.	173	6	196	2	.	157
HIVEP3	59269	bcgsc.ca	37	1	41990461	41990461	+	Silent	SNP	G	G	A	rs35122733	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HIVEP3	NM_024503	exon6	c.C5328T	p.H1776H	.	.	292	15	323	5	G|0.955;A|0.045	157
HLA-A	3105	bcgsc.ca	37	6	29911154	29911154	+	Missense_Mutation	SNP	C	C	A	rs1059509	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HLA-A	NM_001242758	exon3	c.C453A	p.N151K	.	.	166	10	66	1	A|0.422;C|0.578	92
HLA-DRB1	3123	bcgsc.ca	37	6	32548632	32548632	+	Missense_Mutation	SNP	T	T	A	rs78817721	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HLA-DRB1	NM_002124	exon4	c.A654T	p.R218S	.	.	380	12	257	4	T|0.711;A|0.289	1
HNF4G	3174	bcgsc.ca	37	8	76456059	76456059	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HNF4G	NM_004133	exon2	c.A102G	p.P34P	.	.	90	4	130	0	.	187
HNRNPCL1	343069	bcgsc.ca	37	1	12907829	12907829	+	Missense_Mutation	SNP	T	T	C	rs74866336	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HNRNPCL1	NM_001013631	exon2	c.A314G	p.Y105C	.	.	344	15	442	6	T|0.935;C|0.065	68
HOXB8	3218	bcgsc.ca	37	17	46690777	46690777	+	Silent	SNP	A	A	G	rs45441492	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HOXB8	NM_024016	exon2	c.T519C	p.R173R	.	.	273	14	253	3	A|0.924;G|0.076	514
HOXD11	3237	bcgsc.ca	37	2	176973651	176973651	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HOXD11	NM_021192	exon2	c.C798T	p.S266S	.	.	84	4	83	0	.	658
HS1BP3	64342	bcgsc.ca	37	2	20838222	20838222	+	Silent	SNP	C	C	T	rs3796065	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HS1BP3	NM_022460	exon4	c.G597A	p.E199E	.	.	157	11	202	3	C|0.846;T|0.154	91
HS3ST4	9951	ucsc.edu;bcgsc.ca	37	16	26147454	26147454	+	Missense_Mutation	SNP	G	G	T	rs9930821	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HS3ST4	NM_006040	exon2	c.G1256T	p.R419L	.	.	89	9	90	1	G|0.966;T|0.034	67
HSD17B4	3295	bcgsc.ca	37	5	118813182	118813182	+	Missense_Mutation	SNP	A	A	T	rs28943589	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HSD17B4	NM_001199291	exon8	c.A495T	p.K165N	.	.	563	15	555	8	A|0.977;T|0.023	92
HSPH1	10808	bcgsc.ca	37	13	31725260	31725260	+	Silent	SNP	A	A	G	rs11556147	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HSPH1	NM_006644	exon7	c.T732C	p.F244F	.	.	150	7	209	2	A|0.653;G|0.347	90
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135593320	135593320	+	Silent	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HTATSF1	NM_001163280	exon10	c.C1416G	p.P472P	.	.	72	14	66	0	.	132
HTT	3064	bcgsc.ca	37	4	3117168	3117168	+	Silent	SNP	C	C	G	rs1936032	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HTT	NM_002111	exon7	c.C885G	p.L295L	.	.	137	5	127	1	C|0.497;G|0.503	281
HVCN1	84329	bcgsc.ca	37	12	111089224	111089224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HVCN1	NM_032369	exon6	c.G441T	p.L147F	.	.	99	5	75	1	.	91
HYOU1	10525	bcgsc.ca	37	11	118925953	118925953	+	Silent	SNP	C	C	T	rs11822958	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HYOU1	NM_006389	exon5	c.G363A	p.P121P	.	.	134	6	126	2	C|0.953;T|0.047	90
IDH3A	3419	bcgsc.ca	37	15	78458638	78458638	+	Silent	SNP	C	C	T	rs2304826	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IDH3A	NM_005530	exon10	c.C1011T	p.D337D	.	.	166	7	176	1	C|0.950;T|0.050	226
IFT74	80173	bcgsc.ca	37	9	27036473	27036473	+	Missense_Mutation	SNP	A	A	G	rs73438216		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IFT74	NM_001099224	exon14	c.A1080G	p.I360M	.	.	146	5	190	2	A|0.996;G|0.004	515
IGF2R	3482	ucsc.edu;bcgsc.ca	37	6	160471532	160471532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IGF2R	NM_000876	exon19	c.A2542G	p.S848G	.	.	54	5	53	0	.	118
IGSF11	152404	bcgsc.ca	37	3	118621664	118621664	+	Missense_Mutation	SNP	C	C	A	rs36052974	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IGSF11	NM_001015887	exon7	c.G999T	p.E333D	.	.	242	13	229	5	C|0.777;A|0.223	90
IL17RD	54756	bcgsc.ca	37	3	57135216	57135216	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IL17RD	NM_017563	exon11	c.T1155C	p.C385C	.	.	68	4	77	0	.	500
IL22RA1	58985	bcgsc.ca	37	1	24460797	24460797	+	Silent	SNP	T	T	G	rs17852649	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IL22RA1	NM_021258	exon4	c.A435C	p.P145P	.	.	93	5	120	1	T|0.402;G|0.598	91
IL31	386653	bcgsc.ca	37	12	122658492	122658492	+	Silent	SNP	G	G	A	rs56719421	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IL31	NM_001014336	exon2	c.C64T	p.L22L	.	.	115	11	75	0	G|0.927;A|0.073	514
IL31RA	133396	bcgsc.ca	37	5	55155402	55155402	+	Silent	SNP	C	C	T	rs1009639	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IL31RA	NM_001242637	exon2	c.C129T	p.P43P	.	.	228	10	169	2	C|0.334;T|0.666	91
IL4R	3566	ucsc.edu;bcgsc.ca	37	16	27367226	27367226	+	Silent	SNP	C	C	G	rs3024638	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IL4R	NM_000418	exon8	c.C768G	p.T256T	.	.	63	6	64	0	C|0.970;G|0.030	227
IMPG1	3617	bcgsc.ca	37	6	76640803	76640803	+	Missense_Mutation	SNP	G	G	A	rs10943299	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IMPG1	NM_001563	exon15	c.C2110T	p.R704W	.	.	159	8	126	1	G|0.883;A|0.117	93
INO80E	283899	bcgsc.ca	37	16	30012758	30012758	+	Silent	SNP	A	A	C	rs4389160	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	INO80E	NM_173618	exon6	c.A420C	p.P140P	.	.	217	11	133	8	A|0.975;C|0.025	91
INPP1	3628	bcgsc.ca	37	2	191231511	191231511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	INPP1	NM_002194	exon4	c.A356G	p.E119G	.	.	140	6	134	0	.	228
INPP5D	3635	bcgsc.ca	37	2	234079251	234079251	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	INPP5D	NM_005541	exon15	c.1812+1G>C	.	.	.	207	7	177	1	.	652
INTS9	55756	ucsc.edu	37	8	28671105	28671105	+	Silent	SNP	A	A	G	rs202224295		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	INTS9	NM_018250	exon7	c.T513C	p.D171D	.	.	168	16	257	3	A|0.999;G|0.000	24
IP6K2	51447	bcgsc.ca	37	3	48725836	48725836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	IP6K2	NM_016291	exon6	c.T1151C	p.F384S	.	.	157	5	125	0	.	265
IQCF5	389124	bcgsc.ca	37	3	51908179	51908179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001145059	exon2	c.A17G	p.K6R	.	.	110	5	92	0	.	.
ISLR2	57611	bcgsc.ca	37	15	74425204	74425204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ISLR2	NM_001130138	exon4	c.T109C	p.C37R	.	.	82	5	71	0	.	90
ITGA10	8515	bcgsc.ca	37	1	145537794	145537794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ITGA10	NM_003637	exon21	c.A2632G	p.S878G	.	.	211	6	108	4	.	231
ITGAE	3682	bcgsc.ca	37	17	3623661	3623661	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ITGAE	NM_002208	exon29	c.T3273C	p.G1091G	.	.	65	4	125	0	.	161
ITGAM	3684	bcgsc.ca	37	16	31271402	31271402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ITGAM	NM_000632	exon1	c.T17C	p.L6P	.	.	89	4	89	0	.	226
ITGB1BP2	26548	bcgsc.ca	37	X	70521676	70521676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ITGB1BP2	NM_012278	exon1	c.A20G	p.N7S	.	.	97	4	55	0	.	131
ITPR1	3708	bcgsc.ca	37	3	4703816	4703816	+	Silent	SNP	G	G	A	rs34252981		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ITPR1	NM_001099952	exon15	c.G1302A	p.P434P	.	.	157	7	182	0	G|0.995;A|0.005	710
JAK1	3716	bcgsc.ca	37	1	65323406	65323406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	JAK1	NM_002227	exon10	c.T1391C	p.V464A	.	.	148	6	181	2	.	3900
KANSL1L	151050	bcgsc.ca	37	2	211018719	211018719	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_152519	exon2	c.T588C	p.T196T	.	.	93	4	99	0	.	.
KAT6A	7994	bcgsc.ca	37	8	41791234	41791234	+	Missense_Mutation	SNP	C	C	T	rs149043274	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001099412	exon18	c.G4504A	p.V1502M	.	.	113	9	115	1	C|0.999;T|0.001	.
KATNAL1	84056	bcgsc.ca	37	13	30814609	30814609	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KATNAL1	NM_001014380	exon6	c.A714G	p.R238R	.	.	109	5	149	1	.	90
KATNAL1	84056	bcgsc.ca	37	13	30815155	30815155	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KATNAL1	NM_001014380	exon5	c.T561C	p.D187D	.	.	115	5	135	0	.	90
KCMF1	56888	bcgsc.ca	37	2	85280383	85280383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCMF1	NM_020122	exon7	c.A997G	p.S333G	.	.	197	6	178	1	.	24
KCNAB1	7881	bcgsc.ca	37	3	155861117	155861117	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNAB1	NM_003471	exon1	c.A150G	p.G50G	.	.	78	5	60	0	.	94
KCND1	3750	bcgsc.ca	37	X	48826371	48826371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCND1	NM_004979	exon1	c.T308C	p.L103P	.	.	79	4	50	0	.	133
KCNG4	93107	bcgsc.ca	37	16	84270665	84270665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNG4	NM_172347	exon2	c.T427C	p.F143L	.	.	64	4	61	0	.	93
KCNH5	27133	bcgsc.ca	37	14	63483670	63483670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNH5	NM_172375	exon2	c.T76C	p.S26P	.	.	94	4	84	0	.	98
KCNJ18	100134444	bcgsc.ca	37	17	21318821	21318821	+	Missense_Mutation	SNP	A	A	C	rs1714865	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001194958	exon3	c.A167C	p.E56A	.	.	230	10	226	3	A|0.988;C|0.012	.
KCNJ2	3759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	68172290	68172290	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNJ2	NM_000891	exon2	c.T1110C	p.N370N	.	.	144	14	93	0	.	90
KCNQ4	9132	hgsc.bcm.edu	37	1	41285601	41285602	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNQ4	NM_004700	exon6	c.889_890insG	p.R297fs	.	.	155	10	163	0	.	90
KDM2B	84678	bcgsc.ca	37	12	121987487	121987487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KDM2B	NM_032590	exon5	c.A454G	p.S152G	.	.	111	5	101	4	.	638
KDM4A	9682	bcgsc.ca	37	1	44133647	44133647	+	Missense_Mutation	SNP	A	A	G	rs74070653	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KDM4A	NM_014663	exon9	c.A1120G	p.M374V	.	.	61	6	81	0	A|0.987;G|0.013	227
KDM4C	23081	bcgsc.ca	37	9	7076436	7076436	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KDM4C	NM_001146696	exon18	c.A2493G	p.G831G	.	.	72	4	104	0	.	228
KDR	3791	bcgsc.ca	37	4	55955561	55955561	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KDR	NM_002253	exon25	c.T3384C	p.P1128P	.	.	126	5	94	0	.	2298
KIAA0100	9703	bcgsc.ca	37	17	26961080	26961080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0100	NM_014680	exon17	c.A3095G	p.Y1032C	.	.	83	4	50	0	.	93
KIAA0226	9711	bcgsc.ca	37	3	197432029	197432029	+	Silent	SNP	C	C	A	rs60457064	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0226	NM_014687	exon3	c.G237T	p.T79T	.	.	57	4	50	1	C|0.877;A|0.123	22
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75131540	75131540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0317	NM_001039479	exon18	c.A2192G	p.K731R	.	.	43	4	62	0	.	525
KIAA0319L	79932	bcgsc.ca	37	1	35920049	35920049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0319L	NM_024874	exon11	c.A1694G	p.Q565R	.	.	278	7	299	2	.	92
KIAA0556	23247	bcgsc.ca	37	16	27786312	27786312	+	Silent	SNP	C	C	T	rs61745794	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0556	NM_015202	exon24	c.C4356T	p.G1452G	.	.	64	5	39	0	C|0.992;T|0.008	141
KIAA0947	23379	bcgsc.ca	37	5	5465225	5465225	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA0947	NM_015325	exon13	c.T5778C	p.S1926S	.	.	86	4	88	0	.	48
KIAA1549	57670	bcgsc.ca	37	7	138602071	138602071	+	Silent	SNP	A	A	G	rs61746879	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA1549	NM_020910	exon2	c.T2301C	p.T767T	.	.	80	5	70	1	A|0.939;G|0.061	369
KIAA1671	85379	bcgsc.ca	37	22	25570273	25570273	+	Silent	SNP	G	G	A	rs5760891	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIAA1671	NM_001145206	exon6	c.G4716A	p.L1572L	.	.	235	7	165	2	G|0.898;A|0.102	69
KIF17	57576	bcgsc.ca	37	1	21014027	21014027	+	Missense_Mutation	SNP	G	G	C	rs114066292	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon8	c.C1792G	p.Q598E	.	.	42	4	48	0	G|0.999;C|0.001	94
KIF17	57576	bcgsc.ca	37	1	21014029	21014029	+	Missense_Mutation	SNP	G	G	A	rs114593671		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon8	c.C1790T	p.P597L	.	.	43	4	50	0	G|1.000;A|0.000	94
KIF17	57576	bcgsc.ca	37	1	21014385	21014385	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon8	c.T1434C	p.A478A	.	.	70	4	100	0	.	94
KIF17	57576	bcgsc.ca	37	1	21036245	21036245	+	Missense_Mutation	SNP	T	T	C	rs200398452	alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon4	c.A557G	p.E186G	.	.	98	5	123	0	T|0.999;A|0.001	94
KIF17	57576	ucsc.edu;bcgsc.ca	37	1	21014017	21014017	+	Missense_Mutation	SNP	G	G	A	rs114229809	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF17	NM_020816	exon8	c.C1802T	p.P601L	.	.	42	4	47	0	G|0.999;A|0.001	94
KIF19	124602	ucsc.edu	37	17	72349040	72349040	+	Silent	SNP	C	C	T	rs9897137	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF19	NM_153209	exon15	c.C2061T	p.S687S	.	.	87	9	44	2	C|0.737;T|0.263	90
KIF1C	10749	bcgsc.ca	37	17	4927442	4927442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF1C	NM_006612	exon23	c.T3308C	p.V1103A	.	.	61	4	59	1	.	92
KIF26B	55083	hgsc.bcm.edu;bcgsc.ca	37	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	.	.	172	8	76	0	.	25
KIF3C	3797	bcgsc.ca	37	2	26203407	26203407	+	Silent	SNP	G	G	A	rs80296895	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF3C	NM_002254	exon1	c.C1380T	p.Y460Y	.	.	177	9	127	3	G|0.982;A|0.018	94
KIF9	64147	bcgsc.ca	37	3	47282303	47282303	+	Missense_Mutation	SNP	G	G	A	rs2276853	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF9	NM_182902	exon17	c.C1912T	p.R638W	.	.	282	21	249	4	G|0.440;A|0.560	91
KIFAP3	22920	bcgsc.ca	37	1	169952473	169952473	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIFAP3	NM_014970	exon13	c.T1444C	p.L482L	.	.	172	6	125	0	.	91
KLC1	3831	bcgsc.ca	37	14	104121061	104121061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLC1	NM_182923	exon2	c.A160G	p.K54E	.	.	86	4	124	0	.	90
KLHDC7A	127707	ucsc.edu;bcgsc.ca	37	1	18807620	18807620	+	Missense_Mutation	SNP	G	G	C	rs34109355	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLHDC7A	NM_152375	exon1	c.G145C	p.G49R	.	.	100	10	69	0	G|0.899;C|0.101	93
KLHL25	64410	bcgsc.ca	37	15	86313016	86313016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLHL25	NM_022480	exon2	c.G26A	p.R9H	.	.	48	4	44	0	.	92
KLHL30	377007	bcgsc.ca	37	2	239049611	239049611	+	Silent	SNP	G	G	A	rs75668645	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLHL30	NM_198582	exon2	c.G216A	p.A72A	.	.	198	9	124	2	G|0.991;A|0.009	22
KLHL31	401265	bcgsc.ca	37	6	53516572	53516572	+	Missense_Mutation	SNP	C	C	T	rs116517160	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLHL31	NM_001003760	exon3	c.G1729A	p.E577K	.	.	70	5	32	0	C|0.999;T|0.001	23
KLHL9	55958	bcgsc.ca	37	9	21334288	21334288	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLHL9	NM_018847	exon1	c.C571T	p.L191L	.	.	78	4	91	2	.	94
KLK7	5650	bcgsc.ca	37	19	51483524	51483524	+	Silent	SNP	G	G	A	rs147827338	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KLK7	NM_139277	exon4	c.C441T	p.S147S	.	.	154	8	122	2	G|0.999;A|0.001	650
KMO	8564	bcgsc.ca	37	1	241695792	241695792	+	Silent	SNP	T	T	C	rs3819976	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KMO	NM_003679	exon1	c.T48C	p.G16G	.	.	718	13	389	2	T|0.910;C|0.090	92
KNTC1	9735	bcgsc.ca	37	12	123036011	123036011	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KNTC1	NM_014708	exon15	c.T1137C	p.S379S	.	.	90	4	95	0	.	543
KPNA2	3838	bcgsc.ca	37	17	66040465	66040465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KPNA2	NM_002266	exon9	c.T1193C	p.V398A	.	.	240	6	218	2	.	560
KPNA7	402569	bcgsc.ca	37	7	98800834	98800834	+	Silent	SNP	A	A	G	rs61749907	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KPNA7	NM_001145715	exon2	c.T96C	p.S32S	.	.	139	9	180	3	A|0.921;G|0.079	158
KRT24	192666	bcgsc.ca	37	17	38854564	38854564	+	Silent	SNP	A	A	G	rs71371442	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT24	NM_019016	exon8	c.T1503C	p.T501T	.	.	136	9	111	1	A|0.988;G|0.012	90
KRT24	192666	bcgsc.ca	37	17	38855805	38855805	+	Missense_Mutation	SNP	A	A	G	rs12946793	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT24	NM_019016	exon6	c.T1252C	p.W418R	.	.	290	12	216	2	A|0.984;G|0.016	90
KRT24	192666	bcgsc.ca	37	17	38855813	38855813	+	Missense_Mutation	SNP	C	C	T	rs12945784	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT24	NM_019016	exon6	c.G1244A	p.C415Y	.	.	282	11	210	1	C|0.988;T|0.012	90
KRT33B	3884	bcgsc.ca	37	17	39521752	39521752	+	Silent	SNP	G	G	A	rs61741664	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT33B	NM_002279	exon4	c.C642T	p.D214D	.	.	217	9	139	2	G|0.981;A|0.019	90
KRT71	112802	bcgsc.ca	37	12	52946539	52946539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT71	NM_033448	exon1	c.A323G	p.N108S	.	.	190	8	154	1	.	92
KRT79	338785	bcgsc.ca	37	12	53216950	53216950	+	Missense_Mutation	SNP	T	T	C	rs73102423	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT79	NM_175834	exon7	c.A1217G	p.K406R	.	.	181	7	135	1	T|0.942;C|0.058	72
KRT82	3888	bcgsc.ca	37	12	52788945	52788945	+	Missense_Mutation	SNP	C	C	G	rs1732263	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT82	NM_033033	exon9	c.G1356C	p.E452D	.	.	69	4	59	0	C|0.923;G|0.077	92
KRT83	3889	hgsc.bcm.edu;bcgsc.ca	37	12	52708547	52708547	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT83	NM_002282	exon9	c.C1350T	p.S450S	.	.	111	10	87	0	.	91
KRT84	3890	bcgsc.ca	37	12	52777513	52777513	+	Missense_Mutation	SNP	T	T	C	rs2245203	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRT84	NM_033045	exon2	c.A616G	p.I206V	.	.	212	12	183	0	T|0.684;C|0.316	91
KRTAP16-1	100505753	bcgsc.ca	37	17	39464487	39464487	+	Missense_Mutation	SNP	G	G	C	rs2074285	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001146182	exon1	c.C1019G	p.P340R	.	.	138	12	90	0	G|0.450;C|0.550	.
KRTAP16-1	100505753	bcgsc.ca	37	17	39464668	39464668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001146182	exon1	c.C838G	p.R280G	.	.	78	5	51	1	.	.
KRTAP4-3	85290	bcgsc.ca	37	17	39324410	39324410	+	Silent	SNP	G	G	A	rs73985507	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KRTAP4-3	NM_033187	exon1	c.C15T	p.C5C	.	.	172	12	122	2	G|0.944;A|0.056	22
LAMB1	3912	ucsc.edu;bcgsc.ca	37	7	107616188	107616188	+	Missense_Mutation	SNP	G	G	A	rs28750165	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LAMB1	NM_002291	exon10	c.C1135T	p.P379S	.	.	96	12	89	1	G|0.947;A|0.053	97
LAYN	143903	bcgsc.ca	37	11	111414806	111414806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LAYN	NM_001258390	exon3	c.A268G	p.I90V	.	.	158	6	154	1	.	90
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36999419	36999419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LBP	NM_004139	exon11	c.G1187A	p.S396N	.	.	233	22	135	0	.	91
LCE1D	353134	bcgsc.ca	37	1	152770589	152770589	+	Missense_Mutation	SNP	A	A	G	rs11485496	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LCE1D	NM_178352	exon2	c.A319G	p.S107G	.	.	987	21	447	6	A|0.659;G|0.341	90
LDLRAP1	26119	bcgsc.ca	37	1	25889632	25889632	+	Missense_Mutation	SNP	T	T	C	rs6687605	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LDLRAP1	NM_015627	exon6	c.T604C	p.S202P	.	.	73	5	91	1	T|0.532;C|0.468	91
LILRB4	11006	bcgsc.ca	37	19	55175336	55175336	+	Silent	SNP	C	C	T	rs75051659	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LILRB4	NM_006847	exon3	c.C195T	p.S65S	.	.	409	14	373	5	C|0.991;T|0.009	93
LINS	55180	bcgsc.ca	37	15	101109677	101109677	+	Missense_Mutation	SNP	C	C	A	rs8451	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LINS	NM_001040616	exon7	c.G2040T	p.R680S	.	.	180	8	191	1	C|0.633;A|0.367	92
LINS	55180	bcgsc.ca	37	15	101109794	101109794	+	Missense_Mutation	SNP	C	C	G	rs12157	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LINS	NM_001040616	exon7	c.G1923C	p.E641D	.	.	162	9	131	3	C|0.547;G|0.453	92
LINS	55180	bcgsc.ca	37	15	101113950	101113950	+	Silent	SNP	A	A	G	rs12592868	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LINS	NM_001040616	exon5	c.T1128C	p.S376S	.	.	211	7	193	3	A|0.609;G|0.391	92
LINS	55180	bcgsc.ca	37	15	101114418	101114418	+	Silent	SNP	G	G	A	rs8039437	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LINS	NM_001040616	exon5	c.C660T	p.F220F	.	.	102	7	132	1	G|0.647;A|0.353	92
LMBRD1	55788	bcgsc.ca	37	6	70407465	70407465	+	Missense_Mutation	SNP	A	A	T	rs12648	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LMBRD1	NM_018368	exon14	c.T1407A	p.D469E	.	.	95	8	101	0	A|0.668;T|0.332	91
LMNB1	4001	bcgsc.ca	37	5	126161748	126161748	+	Silent	SNP	G	G	A	rs6875053	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LMNB1	NM_005573	exon9	c.G1560A	p.S520S	.	.	209	7	168	1	G|0.962;A|0.038	226
LOC1720	0	bcgsc.ca	37	2	83084022	83084022	+	RNA	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	206	8	180	3	.	.
LOC389458	0	ucsc.edu	37	7	5112554	5112554	+	RNA	SNP	A	A	C	rs1130329	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	24	4	13	1	A|0.647;C|0.353	.
LOC440311	0	bcgsc.ca	37	15	95398932	95398932	+	RNA	SNP	G	G	A	rs141725991	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	95	5	57	0	G|0.995;A|0.005	.
LOC654342	0	bcgsc.ca	37	2	91843025	91843025	+	RNA	SNP	T	T	C	rs228160	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NR_027238	exon4	c.177-2A>G	.	.	.	556	111	287	21	T|0.375;C|0.625	.
LOC729930	0	bcgsc.ca	37	1	89755836	89755836	+	RNA	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	37	4	63	0	.	.
LONP2	83752	bcgsc.ca	37	16	48311389	48311389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LONP2	NM_031490	exon8	c.A1382G	p.E461G	.	.	84	4	127	0	.	90
LONRF2	164832	bcgsc.ca	37	2	100911940	100911940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LONRF2	NM_198461	exon8	c.T1552C	p.S518P	.	.	155	5	147	0	.	154
LOXL2	4017	ucsc.edu;bcgsc.ca	37	8	23190941	23190941	+	Silent	SNP	T	T	C	rs1010156	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LOXL2	NM_002318	exon5	c.A939G	p.S313S	.	.	47	6	61	0	T|0.521;C|0.479	272
LPHN1	22859	bcgsc.ca	37	19	14269279	14269279	+	Missense_Mutation	SNP	T	T	G	rs41276898	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LPHN1	NM_001008701	exon13	c.A2250C	p.E750D	.	.	63	5	42	0	T|0.935;G|0.065	523
LPIN1	23175	bcgsc.ca	37	2	11955322	11955322	+	Silent	SNP	G	G	C	rs61732581	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LPIN1	NM_001261428	exon19	c.G2505C	p.G835G	.	.	128	11	99	3	G|0.954;C|0.046	156
LPPR4	0	bcgsc.ca	37	1	99753658	99753658	+	Silent	SNP	T	T	A	rs148143169	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LPPR4	NM_001166252	exon2	c.T360A	p.I120I	.	.	249	11	335	5	T|0.996;A|0.004	93
LRBA	987	bcgsc.ca	37	4	151408962	151408962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRBA	NM_006726	exon43	c.A6506G	p.D2169G	.	.	60	4	110	0	.	157
LRIT1	26103	bcgsc.ca	37	10	85992478	85992478	+	Silent	SNP	T	T	C	rs3814210	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRIT1	NM_015613	exon4	c.A1077G	p.G359G	.	.	133	6	130	1	T|0.493;C|0.507	90
LRIT2	340745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	85981835	85981835	+	Silent	SNP	G	G	A	rs140185624	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRIT2	NM_001017924	exon3	c.C1494T	p.R498R	.	.	109	11	75	0	G|1.000;A|0.000	92
LRIT3	345193	bcgsc.ca	37	4	110772785	110772785	+	Missense_Mutation	SNP	T	T	C	rs189057581	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRIT3	NM_198506	exon2	c.T242C	p.V81A	.	.	136	9	176	1	T|0.999;C|0.001	90
LRP11	84918	bcgsc.ca	37	6	150147424	150147424	+	Missense_Mutation	SNP	C	C	T	rs9478144	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRP11	NM_032832	exon6	c.G1324A	p.G442R	.	.	117	9	123	2	C|0.993;T|0.007	90
LRP1B	53353	bcgsc.ca	37	2	141232861	141232861	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRP1B	NM_018557	exon60	c.T9471C	p.R3157R	.	.	268	9	326	1	.	311
LRP1B	53353	bcgsc.ca	37	2	141264466	141264466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRP1B	NM_018557	exon53	c.A8420C	p.E2807A	.	.	294	7	311	0	.	311
LRP1B	53353	bcgsc.ca	37	2	141680655	141680655	+	Silent	SNP	G	G	A	rs113936693	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRP1B	NM_018557	exon21	c.C3198T	p.C1066C	.	.	192	8	148	0	G|0.996;A|0.004	311
LRP2	4036	bcgsc.ca	37	2	170099551	170099551	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRP2	NM_004525	exon24	c.T3582C	p.C1194C	.	.	119	5	126	0	.	175
LRRC4	64101	bcgsc.ca	37	7	127669857	127669857	+	Silent	SNP	A	A	T	rs3823994	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRRC4	NM_022143	exon2	c.T837A	p.S279S	.	.	161	7	189	1	A|0.606;T|0.394	154
LRRC7	57554	bcgsc.ca	37	1	70451950	70451950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRRC7	NM_020794	exon8	c.T698C	p.V233A	.	.	116	5	163	0	.	163
LRRC8A	56262	bcgsc.ca	37	9	131669776	131669776	+	Silent	SNP	T	T	C	rs16930747	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRRC8A	NM_001127244	exon3	c.T333C	p.A111A	.	.	105	5	95	1	T|0.964;C|0.036	90
LRRIQ1	84125	bcgsc.ca	37	12	85623348	85623348	+	Silent	SNP	C	C	A	rs1395676	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRRIQ1	NM_001079910	exon25	c.C4876A	p.R1626R	.	.	121	7	125	0	C|0.968;A|0.032	95
LRRTM4	80059	bcgsc.ca	37	2	77745735	77745735	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LRRTM4	NM_024993	exon3	c.T1260C	p.V420V	.	.	173	6	165	1	.	94
LTBP1	4052	bcgsc.ca	37	2	33482431	33482431	+	Missense_Mutation	SNP	G	G	A	rs80163321	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LTBP1	NM_206943	exon12	c.G2248A	p.V750I	.	.	275	22	250	3	G|0.969;A|0.031	230
LY6G6F	259215	bcgsc.ca	37	6	31675297	31675297	+	Missense_Mutation	SNP	C	C	T	rs805295	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LY6G6F	NM_001003693	exon2	c.C115T	p.P39S	.	.	231	10	151	1	C|0.905;T|0.095	567
LYN	4067	bcgsc.ca	37	8	56866452	56866452	+	Silent	SNP	G	G	A	rs2227980	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LYN	NM_002350	exon8	c.G699A	p.K233K	.	.	133	9	130	1	G|0.860;A|0.140	1002
LYPLA2	11313	bcgsc.ca	37	1	24119242	24119242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LYPLA2	NM_007260	exon2	c.A70G	p.T24A	.	.	60	5	56	1	.	92
LYST	1130	bcgsc.ca	37	1	235920740	235920740	+	Silent	SNP	C	C	T	rs10926586	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LYST	NM_000081	exon24	c.G6900A	p.L2300L	.	.	366	10	238	2	C|0.971;T|0.029	143
MACF1	23499	bcgsc.ca	37	1	39846003	39846003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MACF1	NM_012090	exon51	c.T7420C	p.S2474P	.	.	154	5	211	1	.	165
MAGEC1	9947	bcgsc.ca	37	X	140995488	140995488	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAGEC1	NM_005462	exon4	c.T2298C	p.P766P	.	.	64	4	45	0	.	133
MAGED1	9500	broad.mit.edu	37	X	51638449	51638449	+	Missense_Mutation	SNP	A	A	C	rs137856838		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAGED1	NM_001005333	exon4	c.A514C	p.N172H	.	.	101	8	64	1	A|1.000;C|0.000	133
MAN2A1	4124	bcgsc.ca	37	5	109178036	109178036	+	Silent	SNP	A	A	G	rs151185042	alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAN2A1	NM_002372	exon17	c.A2574G	p.E858E	.	.	284	7	375	1	A|1.000;C|0.000	92
MAN2C1	4123	bcgsc.ca	37	15	75654209	75654209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAN2C1	NM_001256494	exon9	c.A1088G	p.K363R	.	.	67	4	84	0	.	90
MAP2	4133	bcgsc.ca	37	2	210517915	210517915	+	Silent	SNP	T	T	C	rs2271252	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAP2	NM_001039538	exon5	c.T21C	p.D7D	.	.	189	6	167	2	T|0.756;C|0.244	591
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128075798	128075798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAP3K2	NM_006609	exon12	c.G1141T	p.E381X	.	.	114	13	118	0	.	1403
MAP4K4	9448	bcgsc.ca	37	2	102446006	102446006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAP4K4	NM_004834	exon6	c.A458G	p.D153G	.	.	230	7	197	0	.	547
MAPKAP1	79109	bcgsc.ca	37	9	128206852	128206852	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MAPKAP1	NM_001006617	exon11	c.T1371C	p.Y457Y	.	.	131	5	123	0	.	678
MARCH7	64844	bcgsc.ca	37	2	160604812	160604812	+	Silent	SNP	C	C	T	rs1427329	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MARCH7	NM_022826	exon5	c.C1011T	p.P337P	.	.	172	9	178	2	C|0.649;T|0.351	68
MATN2	4147	bcgsc.ca	37	8	99006748	99006748	+	Silent	SNP	C	C	T	rs11559201	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MATN2	NM_002380	exon7	c.C1122T	p.H374H	.	.	169	7	141	2	C|0.872;T|0.128	24
MATN4	8785	bcgsc.ca	37	20	43922637	43922637	+	Missense_Mutation	SNP	C	C	T	rs79708482	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MATN4	NM_003833	exon9	c.G1598A	p.G533E	.	.	84	5	46	1	C|0.987;T|0.013	90
MBD3	53615	bcgsc.ca	37	19	1582675	1582675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MBD3	NM_003926	exon4	c.T445C	p.F149L	.	.	108	6	77	2	.	93
MCF2L	23263	bcgsc.ca	37	13	113714945	113714945	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MCF2L	NM_001112732	exon5	c.T408C	p.L136L	.	.	81	4	46	1	.	228
MCPH1	79648	bcgsc.ca	37	8	6338306	6338306	+	Missense_Mutation	SNP	C	C	A	rs12674488	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MCPH1	NM_024596	exon11	c.C2045A	p.T682N	.	.	74	5	111	1	C|0.850;A|0.150	229
MDH1B	130752	bcgsc.ca	37	2	207619779	207619779	+	Silent	SNP	A	A	G	rs59358632	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MDH1B	NM_001039845	exon5	c.T864C	p.G288G	.	.	200	6	147	2	A|0.884;G|0.116	94
MDN1	23195	bcgsc.ca	37	6	90463886	90463886	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MDN1	NM_014611	exon21	c.T2880C	p.P960P	.	.	84	4	72	0	.	100
MED6	10001	bcgsc.ca	37	14	71063391	71063391	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MED6	NM_005466	exon3	c.T211C	p.L71L	.	.	64	4	78	0	.	90
MEGF6	1953	bcgsc.ca	37	1	3418391	3418391	+	Silent	SNP	C	C	T	rs4648508	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MEGF6	NM_001409	exon18	c.G2283A	p.P761P	.	.	135	9	83	0	C|0.702;T|0.298	90
MEIOB	254528	bcgsc.ca	37	16	1891920	1891920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001163560	exon11	c.A935G	p.K312R	.	.	221	6	318	0	.	.
MEIS3P1	4213	bcgsc.ca	37	17	15690863	15690863	+	RNA	SNP	T	T	A	rs146517427	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	85	6	95	0	T|0.982;A|0.018	.
MERTK	10461	bcgsc.ca	37	2	112755001	112755001	+	Missense_Mutation	SNP	A	A	G	rs2230515	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MERTK	NM_006343	exon10	c.A1552G	p.I518V	.	.	187	10	184	1	A|0.416;G|0.584	1463
MERTK	10461	bcgsc.ca	37	2	112765973	112765973	+	Silent	SNP	A	A	G	rs1131244	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MERTK	NM_006343	exon14	c.A1881G	p.S627S	.	.	115	6	117	1	A|0.458;G|0.542	1463
METTL21C	196541	bcgsc.ca	37	13	103339365	103339365	+	Silent	SNP	A	A	G	rs660207	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	METTL21C	NM_001010977	exon3	c.T325C	p.L109L	.	.	153	6	106	0	A|0.484;G|0.516	90
MFI2	4241	bcgsc.ca	37	3	196746629	196746629	+	Silent	SNP	T	T	C	rs1056664	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MFI2	NM_033316	exon7	c.A756G	p.E252E	.	.	216	10	198	4	T|0.742;C|0.258	90
MFSD11	79157	bcgsc.ca	37	17	74739537	74739537	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MFSD11	NM_001242532	exon6	c.A495G	p.S165S	.	.	197	7	209	2	.	91
MGAM	8972	bcgsc.ca	37	7	141732665	141732665	+	Missense_Mutation	SNP	C	C	T	rs10266732	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MGAM	NM_004668	exon14	c.C1625T	p.S542L	.	.	287	21	401	5	C|0.899;T|0.101	70
MGAM	8972	bcgsc.ca	37	7	141764188	141764188	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MGAM	NM_004668	exon37	c.G4350A	p.L1450L	.	.	54	4	61	0	.	70
MICALL2	79778	bcgsc.ca	37	7	1498858	1498858	+	Silent	SNP	A	A	G	rs61090716	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MICALL2	NM_182924	exon1	c.T105C	p.A35A	.	.	139	17	93	1	A|0.961;G|0.039	90
MICALL2	79778	ucsc.edu;bcgsc.ca	37	7	1479613	1479613	+	Silent	SNP	G	G	A	rs76110611	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MICALL2	NM_182924	exon9	c.C1914T	p.P638P	.	.	113	14	108	0	G|0.982;A|0.018	90
MIOS	54468	bcgsc.ca	37	7	7645667	7645667	+	Silent	SNP	C	C	T	rs138085974	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MIOS	NM_019005	exon12	c.C2496T	p.H832H	.	.	219	13	254	4	C|0.993;T|0.007	90
MIR665	100126315	bcgsc.ca	37	14	101341401	101341401	+	RNA	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	80	4	91	2	.	.
MIRLET7BHG	400931	bcgsc.ca	37	22	46505806	46505806	+	RNA	SNP	C	C	G	rs12159905	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	75	8	60	0	C|0.958;G|0.042	.
MLLT6	4302	bcgsc.ca	37	17	36873204	36873204	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MLLT6	NM_005937	exon10	c.T1621C	p.L541L	.	.	81	6	58	1	.	659
MMAA	166785	bcgsc.ca	37	4	146572227	146572227	+	Silent	SNP	G	G	A	rs11721553	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MMAA	NM_172250	exon5	c.G747A	p.S249S	.	.	209	9	278	2	G|0.928;A|0.072	91
MMP11	4320	bcgsc.ca	37	22	24121521	24121521	+	Missense_Mutation	SNP	T	T	C	rs28363648	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MMP11	NM_005940	exon2	c.T256C	p.S86P	.	.	64	5	37	0	T|0.991;C|0.009	291
MMS22L	253714	bcgsc.ca	37	6	97729128	97729128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MMS22L	NM_198468	exon3	c.T275C	p.L92P	.	.	74	4	81	0	.	92
MN1	4330	bcgsc.ca	37	22	28193384	28193384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MN1	NM_002430	exon1	c.A3148G	p.S1050G	.	.	66	5	53	1	.	993
MPG	4350	bcgsc.ca	37	16	129654	129654	+	Silent	SNP	C	C	T	rs710081	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MPG	NM_002434	exon3	c.C270T	p.F90F	.	.	61	6	59	2	C|0.762;T|0.238	228
MRGPRX1	259249	bcgsc.ca	37	11	18956226	18956226	+	Missense_Mutation	SNP	T	T	C	rs41495849		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MRGPRX1	NM_147199	exon1	c.A106G	p.I36V	.	.	235	11	198	2	T|1.000;|0.000	92
MROH2B	133558	bcgsc.ca	37	5	41005707	41005707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_173489	exon35	c.A3790G	p.M1264V	.	.	123	5	147	1	.	.
MROH2B	133558	bcgsc.ca	37	5	41049410	41049410	+	Silent	SNP	C	C	T	rs116584060	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_173489	exon14	c.G1473A	p.S491S	.	.	254	12	231	2	C|0.951;T|0.049	.
MROH2B	133558	bcgsc.ca	37	5	41064664	41064664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_173489	exon5	c.A370G	p.S124G	.	.	81	4	56	0	.	.
MRPL13	28998	bcgsc.ca	37	8	121426258	121426258	+	Missense_Mutation	SNP	T	T	C	rs142198818	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MRPL13	NM_014078	exon6	c.A487G	p.I163V	.	.	402	11	343	4	T|0.997;C|0.003	226
MRPL28	10573	bcgsc.ca	37	16	419092	419092	+	Silent	SNP	A	A	G	rs3830160	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MRPL28	NM_006428	exon3	c.T417C	p.Y139Y	.	.	104	9	121	1	A|0.346;G|0.654	90
MS4A5	64232	bcgsc.ca	37	11	60199912	60199912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MS4A5	NM_023945	exon3	c.C311T	p.A104V	.	.	50	4	73	1	.	154
MS4A7	58475	bcgsc.ca	37	11	60157045	60157045	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MS4A7	NM_021201	exon5	c.T522C	p.C174C	.	.	131	7	134	1	.	91
MSGN1	343930	bcgsc.ca	37	2	17998095	17998095	+	Missense_Mutation	SNP	C	C	T	rs35858730	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MSGN1	NM_001105569	exon1	c.C310T	p.H104Y	.	.	78	7	46	0	C|0.602;T|0.398	69
MTHFD1	4522	bcgsc.ca	37	14	64916293	64916293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MTHFD1	NM_005956	exon24	c.A2410G	p.R804G	.	.	68	4	59	0	.	92
MUC16	94025	bcgsc.ca	37	19	9059307	9059307	+	Missense_Mutation	SNP	C	C	T	rs12461695	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC16	NM_024690	exon3	c.G28139A	p.G9380D	.	.	236	10	230	3	C|0.861;T|0.139	566
MUC16	94025	bcgsc.ca	37	19	9070079	9070079	+	Silent	SNP	C	C	G	rs1559170	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC16	NM_024690	exon3	c.G17367C	p.T5789T	.	.	270	9	215	2	C|0.806;G|0.194	566
MUC17	140453	bcgsc.ca	37	7	100684313	100684313	+	Missense_Mutation	SNP	A	A	G	rs73712047	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC17	NM_001040105	exon3	c.A9616G	p.T3206A	.	.	123	7	129	1	A|0.982;G|0.018	95
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100680521	100680521	+	Missense_Mutation	SNP	G	G	A	rs73712043	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC17	NM_001040105	exon3	c.G5824A	p.E1942K	.	.	91	13	131	0	G|0.963;A|0.037	95
MUC2	4583	ucsc.edu;bcgsc.ca	37	11	1075850	1075850	+	Silent	SNP	G	G	A	rs11825969	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC2	NM_002457	exon2	c.G276A	p.E92E	.	.	56	5	38	0	G|0.844;A|0.156	90
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC6	NM_005961	exon31	c.T5966C	p.F1989S	.	.	2209	58	2436	69	.	23
MUC6	4588	bcgsc.ca	37	11	1029577	1029577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUC6	NM_005961	exon9	c.G1054A	p.V352M	.	.	183	8	139	2	.	23
MUM1L1	139221	bcgsc.ca	37	X	105450107	105450107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUM1L1	NM_152423	exon5	c.A682G	p.S228G	.	.	107	5	87	0	.	133
MUM1L1	139221	bcgsc.ca	37	X	105450242	105450242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MUM1L1	NM_152423	exon5	c.T817C	p.S273P	.	.	94	4	58	0	.	133
MXRA5	25878	bcgsc.ca	37	X	3238575	3238575	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MXRA5	NM_015419	exon5	c.T5151C	p.P1717P	.	.	75	4	72	0	.	136
MYBL2	4605	bcgsc.ca	37	20	42338613	42338613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYBL2	NM_002466	exon10	c.C1516T	p.P506S	.	.	135	5	72	0	.	415
MYBPC1	4604	bcgsc.ca	37	12	102008280	102008280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYBPC1	NM_001254719	exon2	c.A32G	p.E11G	.	.	61	4	57	0	.	94
MYCBP2	23077	bcgsc.ca	37	13	77831812	77831812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYCBP2	NM_015057	exon14	c.G2170A	p.G724R	.	.	221	6	163	0	.	236
MYCBPAP	84073	bcgsc.ca	37	17	48596439	48596439	+	Missense_Mutation	SNP	C	C	T	rs73334009	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYCBPAP	NM_032133	exon6	c.C886T	p.R296C	.	.	131	7	101	2	C|0.991;T|0.009	230
MYH11	4629	bcgsc.ca	37	16	15818141	15818141	+	Silent	SNP	A	A	C	rs2075511	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYH11	NM_001040114	exon32	c.T4263G	p.A1421A	.	.	218	14	250	4	A|0.589;C|0.411	666
MYLK2	85366	bcgsc.ca	37	20	30408025	30408025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYLK2	NM_033118	exon3	c.T149C	p.L50P	.	.	240	6	121	1	.	760
MYO18A	399687	bcgsc.ca	37	17	27425435	27425435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYO18A	NM_078471	exon24	c.T3809C	p.L1270P	.	.	76	4	40	0	.	22
MYO1B	4430	bcgsc.ca	37	2	192257891	192257891	+	Silent	SNP	C	C	T	rs148788532	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYO1B	NM_012223	exon20	c.C2169T	p.H723H	.	.	175	6	159	2	C|0.999;T|0.001	238
MYO1F	4542	bcgsc.ca	37	19	8606853	8606853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYO1F	NM_012335	exon15	c.T1547C	p.F516S	.	.	69	4	58	0	.	93
MYO3B	140469	bcgsc.ca	37	2	171070912	171070912	+	Silent	SNP	T	T	C	rs13385825	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYO3B	NM_001083615	exon4	c.T345C	p.T115T	.	.	152	13	201	0	T|0.608;C|0.392	530
MYOCD	93649	bcgsc.ca	37	17	12666739	12666739	+	Silent	SNP	G	G	A	rs28730830	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	MYOCD	NM_001146312	exon14	c.G2739A	p.Q913Q	.	.	185	7	224	2	G|0.981;A|0.019	93
NACAD	23148	broad.mit.edu;bcgsc.ca	37	7	45120507	45120507	+	Missense_Mutation	SNP	A	A	T	rs188128267	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001146334	exon6	c.T4519A	p.C1507S	.	.	35	4	40	0	A|0.999;T|0.000	.
NADK	65220	ucsc.edu	37	1	1691199	1691199	+	Missense_Mutation	SNP	C	C	T	rs183152010		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NADK	NM_001198994	exon4	c.G406A	p.G136S	.	.	79	7	80	1	C|0.994;T|0.006	44
NAGK	55577	bcgsc.ca	37	2	71304738	71304738	+	Silent	SNP	G	G	A	rs1043701	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NAGK	NM_017567	exon9	c.G954A	p.V318V	.	.	115	9	104	0	G|0.935;A|0.065	115
NAV2	89797	bcgsc.ca	37	11	19854088	19854088	+	Missense_Mutation	SNP	G	G	A	rs6483617	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NAV2	NM_145117	exon2	c.G326A	p.R109K	.	.	136	8	125	0	G|0.573;A|0.427	96
NBEA	26960	bcgsc.ca	37	13	35622698	35622698	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NBEA	NM_015678	exon5	c.724-2A>G	.	.	.	170	5	293	1	.	144
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36046548	36046548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NBEA	NM_015678	exon41	c.C6460T	p.L2154F	.	.	32	12	22	0	.	144
NBPF6	653149	bcgsc.ca	37	1	109010261	109010261	+	Missense_Mutation	SNP	G	G	A	rs139572545		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001143987	exon15	c.G1936A	p.A646T	.	.	1116	33	1159	18	G|0.953;A|0.047	.
NCKAP1L	3071	bcgsc.ca	37	12	54922054	54922054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NCKAP1L	NM_005337	exon22	c.A2399G	p.Q800R	.	.	100	5	98	2	.	93
NCOA2	10499	bcgsc.ca	37	8	71039123	71039123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NCOA2	NM_006540	exon19	c.G3841A	p.G1281S	.	.	139	7	168	0	.	639
NCOA7	135112	bcgsc.ca	37	6	126210482	126210482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NCOA7	NM_001199619	exon10	c.G1282A	p.G428S	.	.	87	5	97	0	.	227
NCOR2	9612	bcgsc.ca	37	12	124821666	124821666	+	Silent	SNP	G	G	A	rs61751354		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NCOR2	NM_006312	exon40	c.C5748T	p.C1916C	.	.	257	12	174	1	G|0.978;A|0.022	229
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3705	3705	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000361390	exon1	c.G399A	p.L133L	.	.	163	19	107	1	.	.
ND3	0	bcgsc.ca	37	MT	10398	10398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000361227	exon1	c.A340G	p.T114A	.	.	188	23	139	1	.	.
ND3	0	bcgsc.ca	37	MT	10400	10400	+	Silent	SNP	C	C	T	rs200481026	alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000361227	exon1	c.C342T	p.T114T	.	.	186	23	136	1	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12705	12705	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	ENST00000361567	exon1	c.C369T	p.I123I	.	.	182	25	114	1	.	.
NEB	4703	bcgsc.ca	37	2	152418627	152418627	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NEB	NM_001271208	exon121	c.T18993C	p.S6331S	.	.	85	4	77	0	.	145
NEB	4703	bcgsc.ca	37	2	152521096	152521096	+	Silent	SNP	C	C	T	rs10170273	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NEB	NM_004543	exon44	c.G5370A	p.E1790E	.	.	203	11	186	3	C|0.575;T|0.425	145
NECAB2	54550	bcgsc.ca	37	16	84012084	84012084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NECAB2	NM_019065	exon3	c.T262C	p.F88L	.	.	74	5	84	0	.	70
NEDD4	4734	bcgsc.ca	37	15	56152872	56152872	+	Missense_Mutation	SNP	C	C	T	rs2303580	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NEDD4	NM_198400	exon3	c.G1820A	p.R607Q	.	.	356	11	378	4	C|0.292;T|0.708	723
NELL2	4753	bcgsc.ca	37	12	45269683	45269683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NELL2	NM_001145110	exon2	c.A39G	p.I13M	.	.	64	4	43	0	.	517
NEO1	4756	bcgsc.ca	37	15	73564803	73564803	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NEO1	NM_001172623	exon19	c.T2865C	p.T955T	.	.	79	4	77	0	.	116
NF1	4763	bcgsc.ca	37	17	29663721	29663721	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NF1	NM_001042492	exon42	c.T6216C	p.H2072H	.	.	218	6	194	1	.	3353
NFE2L3	9603	bcgsc.ca	37	7	26225171	26225171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NFE2L3	NM_004289	exon4	c.A1853G	p.E618G	.	.	172	6	212	0	.	94
NHSL1	57224	bcgsc.ca	37	6	138745863	138745863	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NHSL1	NM_020464	exon7	c.T4188C	p.A1396A	.	.	115	6	103	1	.	68
NHSL2	340527	bcgsc.ca	37	X	71358993	71358993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NHSL2	NM_001013627	exon6	c.A1595G	p.E532G	.	.	62	4	51	0	.	108
NIN	51199	bcgsc.ca	37	14	51223867	51223867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NIN	NM_020921	exon18	c.T3881C	p.L1294P	.	.	180	6	102	0	.	229
NINL	22981	bcgsc.ca	37	20	25434139	25434139	+	Missense_Mutation	SNP	C	C	T	rs17857107	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NINL	NM_025176	exon24	c.G4097A	p.R1366H	.	.	234	9	194	2	C|0.915;T|0.085	94
NLRP1	22861	bcgsc.ca	37	17	5461671	5461671	+	Missense_Mutation	SNP	G	G	C	rs52795654	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NLRP1	NM_033007	exon4	c.C2345G	p.T782S	.	.	217	13	277	4	G|0.931;C|0.069	274
NLRP8	126205	bcgsc.ca	37	19	56466124	56466124	+	Missense_Mutation	SNP	G	G	A	rs11880691	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NLRP8	NM_176811	exon3	c.G700A	p.A234T	.	.	166	7	115	0	G|0.945;A|0.055	361
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142396836	142396836	+	Silent	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NMBR	NM_002511	exon3	c.C1122G	p.T374T	.	.	169	46	168	0	.	946
NME4	4833	bcgsc.ca	37	16	449659	449659	+	Silent	SNP	G	G	A	rs14293	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NME4	NM_005009	exon4	c.G360A	p.S120S	.	.	73	6	86	0	G|0.556;A|0.444	115
NOBOX	135935	bcgsc.ca	37	7	144107255	144107255	+	Silent	SNP	A	A	G	rs138463368		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOBOX	NM_001080413	exon1	c.T66C	p.D22D	.	.	316	12	315	3	A|0.992;G|0.008	69
NOL9	79707	bcgsc.ca	37	1	6610532	6610532	+	Silent	SNP	G	G	A	rs78433066	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOL9	NM_024654	exon2	c.C540T	p.H180H	.	.	221	9	283	2	G|0.989;A|0.011	515
NOP2	4839	bcgsc.ca	37	12	6672928	6672928	+	Missense_Mutation	SNP	C	C	G	rs115447939	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOP2	NM_001258309	exon8	c.G639C	p.W213C	.	.	143	6	122	1	C|0.989;G|0.011	92
NOP58	51602	bcgsc.ca	37	2	203167765	203167765	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOP58	NM_015934	exon14	c.C1524T	p.T508T	.	.	97	4	156	0	.	90
NOTCH2	4853	bcgsc.ca	37	1	120502076	120502076	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOTCH2	NM_001200001	exon12	c.C1965T	p.I655I	.	.	84	4	85	0	.	1441
NOX5	79400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69348934	69348934	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NOX5	NM_024505	exon16	c.G2196A	p.K732K	.	.	111	17	74	1	.	136
NPSR1	387129	bcgsc.ca	37	7	34889182	34889182	+	Missense_Mutation	SNP	A	A	G	rs6972158	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NPSR1	NM_207172	exon9	c.A1031G	p.Q344R	.	.	195	12	275	3	A|0.662;G|0.338	94
NPY1R	4886	bcgsc.ca	37	4	164247342	164247342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NPY1R	NM_000909	exon2	c.T365C	p.V122A	.	.	56	4	77	0	.	523
NR1H4	9971	bcgsc.ca	37	12	100934515	100934515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NR1H4	NM_001206993	exon7	c.T1027C	p.F343L	.	.	179	6	221	0	.	227
NRAP	4892	bcgsc.ca	37	10	115422489	115422489	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NRAP	NM_001261463	exon3	c.T204C	p.Y68Y	.	.	141	5	190	2	.	522
NRG1	3084	bcgsc.ca	37	8	32472037	32472037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NRG1	NM_001160004	exon4	c.A406G	p.I136V	.	.	129	5	218	1	.	525
NSMCE1	197370	ucsc.edu;bcgsc.ca	37	16	27268779	27268779	+	Missense_Mutation	SNP	G	G	C	rs7195194	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NSMCE1	NM_145080	exon2	c.C113G	p.T38R	.	.	66	6	71	0	G|0.913;C|0.087	90
NT5C1B	93034	bcgsc.ca	37	2	18757501	18757501	+	Silent	SNP	G	G	C	rs3902946	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NT5C1B	NM_001199087	exon9	c.C1509G	p.L503L	.	.	442	12	406	3	G|0.689;C|0.311	47
NTN3	4917	bcgsc.ca	37	16	2523002	2523002	+	Silent	SNP	G	G	T	rs113551249	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NTN3	NM_006181	exon3	c.G1134T	p.P378P	.	.	49	4	39	0	G|0.975;T|0.025	90
NUDCD1	84955	bcgsc.ca	37	8	110301998	110301998	+	Missense_Mutation	SNP	T	T	C	rs2980618	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NUDCD1	NM_032869	exon5	c.A805G	p.I269V	.	.	902	16	877	8	T|0.657;C|0.343	227
NWD1	284434	bcgsc.ca	37	19	16890243	16890243	+	Missense_Mutation	SNP	C	C	G	rs773930	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NWD1	NM_001007525	exon12	c.C2698G	p.Q900E	.	.	99	8	69	0	C|0.646;G|0.354	7
NYAP1	222950	bcgsc.ca	37	7	100086082	100086082	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_173564	exon4	c.T738C	p.P246P	.	.	74	6	54	1	.	.
OASL	8638	bcgsc.ca	37	12	121458657	121458657	+	Missense_Mutation	SNP	T	T	C	rs113173892	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OASL	NM_003733	exon6	c.A1252G	p.I418V	.	.	116	12	105	1	T|0.995;C|0.005	69
OBSL1	23363	bcgsc.ca	37	2	220418399	220418399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OBSL1	NM_015311	exon16	c.T4886C	p.V1629A	.	.	75	4	79	0	.	71
OGFOD3	79701	bcgsc.ca	37	17	80352303	80352303	+	Missense_Mutation	SNP	G	G	A	rs62079523	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_175902	exon9	c.C940T	p.P314S	.	.	105	6	76	0	G|0.728;A|0.272	.
OR10A4	283297	bcgsc.ca	37	11	6898540	6898540	+	Missense_Mutation	SNP	G	G	A	rs7938371	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10A4	NM_207186	exon1	c.G662A	p.R221H	.	.	207	7	231	5	G|0.872;A|0.128	69
OR10A6	390093	bcgsc.ca	37	11	7950024	7950024	+	Silent	SNP	A	A	G	rs12272735	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10A6	NM_001004461	exon1	c.T186C	p.F62F	.	.	334	13	317	3	A|0.657;G|0.343	70
OR10H2	26538	bcgsc.ca	37	19	15839459	15839459	+	Silent	SNP	G	G	A	rs11669315	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10H2	NM_013939	exon1	c.G606A	p.L202L	.	.	428	15	374	3	G|0.839;A|0.161	70
OR10R2	343406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158450031	158450031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10R2	NM_001004472	exon1	c.T364C	p.F122L	.	.	657	53	396	0	.	161
OR10S1	219873	bcgsc.ca	37	11	123848163	123848163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10S1	NM_001004474	exon1	c.T236C	p.L79P	.	.	85	4	72	0	.	70
OR12D2	26529	bcgsc.ca	37	6	29364643	29364643	+	Missense_Mutation	SNP	T	T	C	rs4987411	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR12D2	NM_013936	exon1	c.T167C	p.L56P	.	.	361	9	275	1	T|0.630;C|0.370	69
OR12D2	26529	bcgsc.ca	37	6	29364815	29364815	+	Missense_Mutation	SNP	C	C	G	rs2073154	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR12D2	NM_013936	exon1	c.C339G	p.F113L	.	.	467	14	288	6	C|0.564;G|0.436	69
OR12D2	26529	bcgsc.ca	37	6	29364835	29364835	+	Missense_Mutation	SNP	T	T	G	rs2073153	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR12D2	NM_013936	exon1	c.T359G	p.L120R	.	.	474	16	303	5	T|0.650;G|0.350	69
OR12D2	26529	bcgsc.ca	37	6	29364838	29364838	+	Missense_Mutation	SNP	C	C	G	rs2073152	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR12D2	NM_013936	exon1	c.C362G	p.S121C	.	.	468	19	301	8	C|0.625;G|0.375	69
OR1D4	653166	bcgsc.ca	37	17	3143990	3143990	+	RNA	SNP	T	T	A	rs61733729	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR1D4	.	.	.	.	.	.	346	19	373	4	T|0.053;A|0.947	22
OR2A25	392138	bcgsc.ca	37	7	143771786	143771786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR2A25	NM_001004488	exon1	c.T474G	p.H158Q	.	.	171	11	193	3	.	90
OR2C1	4993	bcgsc.ca	37	16	3406516	3406516	+	Silent	SNP	A	A	G	rs11643487	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR2C1	NM_012368	exon1	c.A576G	p.T192T	.	.	60	7	69	0	A|0.659;G|0.341	69
OR2T4	127074	bcgsc.ca	37	1	248524967	248524967	+	Missense_Mutation	SNP	A	A	G	rs200915140		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR2T4	NM_001004696	exon1	c.A85G	p.M29V	.	.	1138	32	556	11	.	68
OR4A16	81327	bcgsc.ca	37	11	55111334	55111334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR4A16	NM_001005274	exon1	c.C658A	p.L220I	.	.	487	14	418	1	.	69
OR4F15	390649	bcgsc.ca	37	15	102358650	102358650	+	Silent	SNP	G	G	A	rs138459892	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR4F15	NM_001001674	exon1	c.G261A	p.K87K	.	.	277	15	280	1	G|0.995;A|0.005	68
OR51F1	256892	bcgsc.ca	37	11	4790857	4790857	+	Silent	SNP	A	A	G	rs11033797	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR51F1	NM_001004752	exon1	c.T291C	p.Y97Y	.	.	126	15	123	3	A|0.713;G|0.287	70
OR5AK2	390181	bcgsc.ca	37	11	56757028	56757028	+	Missense_Mutation	SNP	G	G	A	rs142758369	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR5AK2	NM_001005323	exon1	c.G640A	p.V214I	.	.	489	16	537	8	G|0.998;A|0.002	93
OR5H1	26341	bcgsc.ca	37	3	97851896	97851896	+	Missense_Mutation	SNP	G	G	A	rs75688383	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR5H1	NM_001005338	exon1	c.G355A	p.A119T	.	.	527	39	539	8	G|0.982;A|0.018	136
OR5H6	79295	bcgsc.ca	37	3	97983942	97983942	+	Missense_Mutation	SNP	A	A	G	rs9853906	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR5H6	NM_001005479	exon1	c.A814G	p.T272A	.	.	183	20	245	5	A|0.313;G|0.687	137
OR5H6	79295	bcgsc.ca	37	3	97983981	97983981	+	Missense_Mutation	SNP	G	G	A	rs9871143	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR5H6	NM_001005479	exon1	c.G853A	p.D285N	.	.	259	15	311	5	G|0.610;A|0.390	137
OR5I1	10798	bcgsc.ca	37	11	55703728	55703728	+	Missense_Mutation	SNP	A	A	G	rs4367963	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR5I1	NM_006637	exon1	c.T149C	p.L50S	.	.	154	5	148	1	A|0.901;G|0.099	69
OR5L1	219437	bcgsc.ca	37	11	55579102	55579102	+	Missense_Mutation	SNP	C	C	T	rs34961497	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR5L1	NM_001004738	exon1	c.C160T	p.R54W	.	.	367	13	298	1	C|0.907;T|0.093	73
OR5M11	219487	bcgsc.ca	37	11	56310194	56310194	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001005245	exon1	c.C540T	p.D180D	.	.	91	6	72	0	.	.
OR5M11	219487	broad.mit.edu	37	11	56310058	56310058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001005245	exon1	c.C676T	p.R226W	.	.	55	6	42	0	.	.
OR9A2	135924	bcgsc.ca	37	7	142724155	142724155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR9A2	NM_001001658	exon1	c.T65G	p.L22R	.	.	199	7	212	0	.	69
OR9A4	130075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141618875	141618875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR9A4	NM_001001656	exon1	c.C200T	p.A67V	.	.	199	44	205	1	.	91
OS9	10956	bcgsc.ca	37	12	58090122	58090122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OS9	NM_001017958	exon5	c.A545G	p.D182G	.	.	78	4	79	0	.	493
OSBP2	23762	bcgsc.ca	37	22	31091139	31091139	+	Silent	SNP	A	A	G	rs13053290	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OSBP2	NM_030758	exon1	c.A243G	p.E81E	.	.	121	5	75	2	A|0.726;G|0.274	114
OSBPL6	114880	bcgsc.ca	37	2	179196303	179196303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OSBPL6	NM_001201482	exon6	c.A343G	p.M115V	.	.	319	8	345	1	.	69
OSBPL9	114883	bcgsc.ca	37	1	52250220	52250220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OSBPL9	NM_148909	exon20	c.G1825A	p.G609R	.	.	86	4	149	0	.	68
OTUD7B	56957	bcgsc.ca	37	1	149916231	149916231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OTUD7B	NM_020205	exon12	c.T2057C	p.M686T	.	.	206	6	98	0	.	502
OVCH1	341350	bcgsc.ca	37	12	29630386	29630386	+	Silent	SNP	A	A	G	rs16934306	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OVCH1	NM_183378	exon11	c.T1134C	p.P378P	.	.	115	6	103	0	A|0.886;G|0.114	210
OVCH2	341277	bcgsc.ca	37	11	7712523	7712523	+	Missense_Mutation	SNP	G	G	A	rs4633461	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OVCH2	NM_198185	exon15	c.C1616T	p.T539I	.	.	118	5	122	2	G|0.826;A|0.174	68
OVOL2	58495	bcgsc.ca	37	20	18038203	18038203	+	Missense_Mutation	SNP	T	T	C	rs73252035	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OVOL2	NM_021220	exon1	c.A76G	p.K26E	.	.	186	8	49	0	T|0.980;C|0.020	68
PADI2	11240	bcgsc.ca	37	1	17402255	17402255	+	Silent	SNP	C	C	T	rs3818032	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PADI2	NM_007365	exon12	c.G1374A	p.A458A	.	.	111	6	80	0	C|0.400;T|0.600	208
PAPOLB	56903	bcgsc.ca	37	7	4899694	4899694	+	Missense_Mutation	SNP	T	T	C	rs77680119	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PAPOLB	NM_020144	exon1	c.A1748G	p.N583S	.	.	122	9	118	1	T|0.974;C|0.026	493
PAPOLB	56903	bcgsc.ca	37	7	4901191	4901191	+	Missense_Mutation	SNP	T	T	C	rs3750010	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PAPOLB	NM_020144	exon1	c.A251G	p.K84R	.	.	170	20	166	1	T|0.848;C|0.152	493
PAPOLG	64895	bcgsc.ca	37	2	61002171	61002171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PAPOLG	NM_022894	exon8	c.T607C	p.C203R	.	.	180	6	232	1	.	69
PAPPA2	60676	broad.mit.edu;bcgsc.ca	37	1	176671815	176671815	+	Silent	SNP	G	G	A	rs114236977		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PAPPA2	NM_020318	exon9	c.G3309A	p.S1103S	.	.	152	10	90	1	G|0.998;A|0.002	548
PARP12	64761	bcgsc.ca	37	7	139737556	139737556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PARP12	NM_022750	exon7	c.A1283G	p.K428R	.	.	75	4	78	1	.	525
PBLD	64081	bcgsc.ca	37	10	70066553	70066553	+	Missense_Mutation	SNP	G	G	A	rs12359690	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PBLD	NM_022129	exon2	c.C49T	p.R17C	.	.	283	10	332	5	G|0.961;A|0.039	93
PBRM1	55193	bcgsc.ca	37	3	52623219	52623219	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PBRM1	NM_018313	exon19	c.T2832C	p.H944H	.	.	229	6	203	2	.	575
PCCB	5096	bcgsc.ca	37	3	136002781	136002781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCCB	NM_001178014	exon7	c.A706G	p.M236V	.	.	102	7	80	0	.	90
PCDH7	5099	bcgsc.ca	37	4	30725987	30725987	+	Silent	SNP	G	G	A	rs977931	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDH7	NM_032457	exon1	c.G2943A	p.R981R	.	.	106	9	59	0	A|0.158;C|0.004	229
PCDH9	5101	bcgsc.ca	37	13	67799726	67799726	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDH9	NM_203487	exon2	c.T2847C	p.H949H	.	.	203	7	128	2	.	96
PCDHA1	56147	bcgsc.ca	37	5	140167520	140167520	+	Missense_Mutation	SNP	G	G	A	rs61743799	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDHA1	NM_031410	exon1	c.G1645A	p.V549M	.	.	125	8	77	0	G|0.961;A|0.039	23
PCDHA7	56141	bcgsc.ca	37	5	140216125	140216125	+	Silent	SNP	G	G	A	rs61730621	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDHA7	NM_031852	exon1	c.G2157A	p.T719T	.	.	269	10	214	3	G|0.982;A|0.018	94
PCDHB7	56129	bcgsc.ca	37	5	140554583	140554583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDHB7	NM_018940	exon1	c.T2167C	p.C723R	.	.	186	22	128	6	.	95
PCDHGA3	56112	bcgsc.ca	37	5	140724060	140724060	+	Missense_Mutation	SNP	A	A	C	rs11575948	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDHGA3	NM_032011	exon1	c.A460C	p.I154L	.	.	128	10	141	3	A|0.880;C|0.120	68
PCDHGA9	56107	bcgsc.ca	37	5	140784820	140784820	+	Silent	SNP	C	C	T	rs78501291	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_032089	exon1	c.C2301T	p.H767H	.	.	254	12	258	3	C|0.967;T|0.033	.
PCDHGB2	56103	bcgsc.ca	37	5	140740822	140740822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCDHGB2	NM_018923	exon1	c.A1120G	p.R374G	.	.	198	6	178	2	.	33
PCDHGB6	56100	bcgsc.ca	37	5	140789933	140789933	+	Missense_Mutation	SNP	G	G	A	rs3749767	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_032100	exon1	c.G2164A	p.A722T	.	.	359	17	372	5	G|0.702;A|0.298	.
PCNT	5116	bcgsc.ca	37	21	47821588	47821588	+	Missense_Mutation	SNP	A	A	G	rs6518291	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCNT	NM_006031	exon26	c.A4915G	p.I1639V	.	.	113	6	73	0	A|0.679;G|0.321	141
PCSK1	5122	bcgsc.ca	37	5	95728898	95728898	+	Missense_Mutation	SNP	C	C	G	rs6235	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCSK1	NM_000439	exon14	c.G2069C	p.S690T	.	.	885	29	893	12	C|0.636;G|0.364	92
PCYT1A	5130	bcgsc.ca	37	3	195966443	195966443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PCYT1A	NM_005017	exon9	c.A872G	p.E291G	.	.	211	7	246	3	.	90
PDE12	201626	bcgsc.ca	37	3	57542849	57542849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PDE12	NM_177966	exon1	c.T743C	p.L248P	.	.	128	5	81	0	.	22
PDE6A	5145	bcgsc.ca	37	5	149264390	149264390	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PDE6A	NM_000440	exon15	c.T1879C	p.L627L	.	.	168	6	136	1	.	92
PDZRN4	29951	bcgsc.ca	37	12	41967409	41967409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PDZRN4	NM_001164595	exon10	c.A2828G	p.K943R	.	.	73	4	51	2	.	296
PEBP4	157310	bcgsc.ca	37	8	22675196	22675196	+	Missense_Mutation	SNP	T	T	C	rs34057411	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PEBP4	NM_144962	exon4	c.A311G	p.E104G	.	.	165	10	229	2	T|0.978;C|0.022	137
PELI2	57161	bcgsc.ca	37	14	56746473	56746473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PELI2	NM_021255	exon3	c.A287G	p.D96G	.	.	86	4	53	0	.	91
PELI3	246330	bcgsc.ca	37	11	66240882	66240882	+	Silent	SNP	T	T	C	rs2277302	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PELI3	NM_145065	exon6	c.T627C	p.D209D	.	.	75	5	65	0	T|0.739;C|0.261	91
PER1	5187	ucsc.edu	37	17	8050676	8050676	+	Silent	SNP	C	C	T	rs35859165	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PER1	NM_002616	exon13	c.G1521A	p.T507T	.	.	88	11	80	1	C|0.979;T|0.021	723
PER3	8863	ucsc.edu;bcgsc.ca	37	1	7890064	7890064	+	Silent	SNP	A	A	G	rs12023156	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PER3	NM_016831	exon18	c.A3030G	p.T1010T	.	.	97	11	78	1	A|0.721;G|0.279	93
PFKM	5213	bcgsc.ca	37	12	48539482	48539482	+	Silent	SNP	T	T	G	rs8716	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PFKM	NM_001166686	exon25	c.T2547G	p.A849A	.	.	84	4	53	0	T|0.746;G|0.254	254
PGA5	5222	bcgsc.ca	37	11	61018642	61018642	+	Silent	SNP	C	C	T	rs12280940	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PGA5	NM_014224	exon9	c.C1056T	p.N352N	.	.	373	16	311	5	C|0.912;T|0.088	91
PGM5	5239	bcgsc.ca	37	9	71002383	71002383	+	Silent	SNP	G	G	A	rs76026136		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PGM5	NM_021965	exon4	c.G576A	p.E192E	.	.	348	10	536	11	.	92
PGP	283871	bcgsc.ca	37	16	2263984	2263984	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PGP	NM_001042371	exon2	c.C711T	p.S237S	.	.	77	4	75	0	.	23
PHF15	23338	bcgsc.ca	37	5	133895648	133895648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHF15	NM_015288	exon5	c.T440C	p.L147P	.	.	72	4	41	0	.	90
PHF21A	51317	bcgsc.ca	37	11	45975168	45975168	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHF21A	NM_016621	exon10	c.A1005G	p.K335K	.	.	623	18	637	0	.	92
PHIP	55023	bcgsc.ca	37	6	79724871	79724871	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHIP	NM_017934	exon15	c.T1452C	p.S484S	.	.	87	4	121	0	.	579
PHIP	55023	ucsc.edu	37	6	79656570	79656570	+	Silent	SNP	G	G	A	rs2275290	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHIP	NM_017934	exon37	c.C4228T	p.L1410L	.	.	142	16	117	3	G|0.674;A|0.326	579
PHIP	55023	ucsc.edu;bcgsc.ca	37	6	79675701	79675701	+	Missense_Mutation	SNP	A	A	G	rs9350797	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHIP	NM_017934	exon28	c.T3278C	p.L1093P	.	.	164	15	182	2	A|0.746;G|0.254	579
PHKB	5257	bcgsc.ca	37	16	47581342	47581342	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHKB	NM_000293	exon7	c.595-2A>G	.	.	.	56	4	61	0	.	154
PHLPP1	23239	bcgsc.ca	37	18	60562298	60562298	+	Silent	SNP	A	A	T	rs624821	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_194449	exon5	c.A2121T	p.P707P	.	.	245	8	181	1	A|0.483;T|0.517	.
PHRF1	57661	bcgsc.ca	37	11	582009	582009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PHRF1	NM_020901	exon3	c.A142G	p.S48G	.	.	96	4	78	0	.	22
PIAS1	8554	bcgsc.ca	37	15	68468047	68468047	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIAS1	NM_016166	exon10	c.A1242G	p.A414A	.	.	172	6	167	1	.	637
PICALM	8301	bcgsc.ca	37	11	85692181	85692181	+	Silent	SNP	A	A	C	rs76719109	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	PICALM,bladder,carcinoma,0	PICALM	NM_007166	exon17	c.T1770G	p.A590A	.	.	190	7	236	1	A|0.399;C|0.601	659
PIGG	54872	bcgsc.ca	37	4	533001	533001	+	Missense_Mutation	SNP	T	T	C	rs1127410	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIGG	NM_001127178	exon13	c.T2795C	p.F932S	.	.	633	27	649	9	T|0.790;C|0.210	92
PIK3C2G	5288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18439830	18439830	+	Missense_Mutation	SNP	C	C	T	rs186647102	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIK3C2G	NM_004570	exon3	c.C728T	p.T243M	.	.	386	41	362	0	C|0.999;T|0.000	1312
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209190043	209190043	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIKFYVE	NM_015040	exon20	c.C2508T	p.G836G	.	.	158	23	153	0	.	583
PION	54103	bcgsc.ca	37	7	76950686	76950686	+	Missense_Mutation	SNP	C	C	A	rs17151689	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PION	NM_017439	exon25	c.G1958T	p.W653L	.	.	157	9	149	2	C|0.925;A|0.075	514
PIP4K2C	79837	bcgsc.ca	37	12	57989697	57989697	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIP4K2C	NM_001146258	exon4	c.C396T	p.S132S	.	.	72	4	54	0	.	689
PKD2L1	9033	bcgsc.ca	37	10	102054699	102054699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PKD2L1	NM_016112	exon8	c.T1538C	p.I513T	.	.	78	4	59	0	.	94
PKHD1	5314	bcgsc.ca	37	6	51947328	51947328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PKHD1	NM_170724	exon4	c.G143A	p.G48D	.	.	117	6	66	1	.	603
PKHD1L1	93035	bcgsc.ca	37	8	110406671	110406671	+	Missense_Mutation	SNP	T	T	A	rs73309421		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PKHD1L1	NM_177531	exon10	c.T768A	p.F256L	.	.	487	14	431	4	T|0.966;A|0.034	145
PKHD1L1	93035	bcgsc.ca	37	8	110406677	110406677	+	Silent	SNP	T	T	A	rs73309424	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PKHD1L1	NM_177531	exon10	c.T774A	p.S258S	.	.	496	14	440	5	T|0.966;A|0.034	145
PKHD1L1	93035	bcgsc.ca	37	8	110448635	110448635	+	Missense_Mutation	SNP	A	A	G	rs10093885	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PKHD1L1	NM_177531	exon30	c.A3574G	p.T1192A	.	.	133	7	123	2	A|0.801;G|0.199	145
PKN2	5586	bcgsc.ca	37	1	89250465	89250465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PKN2	NM_006256	exon7	c.A1129G	p.S377G	.	.	68	4	63	0	.	522
PLA2G1B	5319	bcgsc.ca	37	12	120762765	120762765	+	Silent	SNP	C	C	T	rs5637	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLA2G1B	NM_000928	exon3	c.G294A	p.S98S	.	.	279	12	297	4	C|0.786;T|0.214	91
PLA2G2C	391013	bcgsc.ca	37	1	20490518	20490518	+	Missense_Mutation	SNP	T	T	C	rs6426616	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLA2G2C	NM_001105572	exon3	c.A419G	p.Q140R	.	.	88	4	119	1	T|0.342;C|0.658	68
PLA2G4C	8605	bcgsc.ca	37	19	48556348	48556348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLA2G4C	NM_001159322	exon16	c.A1516G	p.T506A	.	.	134	5	113	0	.	92
PLA2G4F	255189	bcgsc.ca	37	15	42442823	42442823	+	Missense_Mutation	SNP	G	G	C	rs73403546	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLA2G4F	NM_213600	exon8	c.C754G	p.L252V	.	.	61	4	58	0	G|0.841;C|0.159	94
PLCB4	5332	bcgsc.ca	37	20	9288522	9288522	+	Missense_Mutation	SNP	G	G	A	rs6077510	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLCB4	NM_182797	exon2	c.G61A	p.A21T	.	.	267	7	142	1	G|0.505;A|0.495	274
PLCG2	5336	bcgsc.ca	37	16	81929527	81929527	+	Silent	SNP	C	C	G	rs13333716	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLCG2	NM_002661	exon13	c.C1188G	p.T396T	.	.	128	7	113	1	C|0.936;G|0.064	892
PLEC	5339	ucsc.edu	37	8	144992238	144992238	+	Silent	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLEC	NM_201380	exon32	c.C12162G	p.S4054S	.	.	41	4	19	0	.	141
PLEKHA4	57664	bcgsc.ca	37	19	49368843	49368843	+	Missense_Mutation	SNP	T	T	C	rs506425	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLEKHA4	NM_001161354	exon3	c.A109G	p.I37V	.	.	201	7	167	2	T|0.416;G|0.085	227
PLEKHG5	57449	bcgsc.ca	37	1	6531117	6531117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLEKHG5	NM_001265592	exon14	c.A1562G	p.E521G	.	.	89	8	56	1	.	652
PLIN4	729359	hgsc.bcm.edu;bcgsc.ca	37	19	4517618	4517618	+	Silent	SNP	G	G	A	rs7250771		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLIN4	NM_001080400	exon1	c.C99T	p.A33A	.	.	101	7	47	0	G|0.991;A|0.009	68
PLXNB1	5364	bcgsc.ca	37	3	48461313	48461313	+	Silent	SNP	C	C	G	rs2362450	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLXNB1	NM_001130082	exon11	c.G2382C	p.P794P	.	.	172	7	129	2	C|0.518;G|0.482	293
PLXNB3	5365	bcgsc.ca	37	X	153035798	153035798	+	Missense_Mutation	SNP	G	G	A	rs2266879	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLXNB3	NM_001163257	exon10	c.G1861A	p.V621I	.	.	106	6	102	2	G|0.542;A|0.458	130
PLXND1	23129	bcgsc.ca	37	3	129275206	129275206	+	Silent	SNP	C	C	T	rs11920311	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PLXND1	NM_015103	exon36	c.G5727A	p.Q1909Q	.	.	202	7	194	1	C|0.790;T|0.210	90
PMS2	5395	bcgsc.ca	37	7	6026864	6026864	+	Missense_Mutation	SNP	G	G	A	rs74902811	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PMS2	NM_000535	exon11	c.C1532T	p.T511M	.	.	68	10	62	1	G|0.974;A|0.026	1083
PMS2	5395	ucsc.edu;mdanderson.org	37	7	6026787	6026787	+	Missense_Mutation	SNP	C	C	T	rs115052399	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PMS2	NM_000535	exon11	c.G1609A	p.E537K	.	.	113	18	98	3	C|0.995;T|0.005	1083
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24741360	24741360	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	POLA1	NM_016937	exon11	c.G1158A	p.T386T	.	.	194	131	175	1	.	229
POM121C	100101267	bcgsc.ca	37	7	75051290	75051290	+	Missense_Mutation	SNP	C	C	G	rs2429591		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001099415	exon13	c.G2245C	p.A749P	.	.	177	9	169	5	C|0.966;G|0.034	.
POM121C	100101267	bcgsc.ca	37	7	75051311	75051311	+	Missense_Mutation	SNP	T	T	C	rs115572784	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001099415	exon13	c.A2224G	p.T742A	.	.	165	8	156	1	T|0.965;C|0.035	.
POM121C	100101267	bcgsc.ca	37	7	75053499	75053499	+	Missense_Mutation	SNP	G	G	A	rs113744930	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001099415	exon12	c.C881T	p.S294L	.	.	562	20	514	9	G|0.880;A|0.120	.
POMT2	29954	bcgsc.ca	37	14	77771069	77771069	+	Silent	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	POMT2	NM_013382	exon4	c.G513T	p.S171S	.	.	69	5	64	0	.	91
POP1	10940	bcgsc.ca	37	8	99153088	99153088	+	Missense_Mutation	SNP	A	A	C	rs17184326	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	POP1	NM_001145860	exon11	c.A1566C	p.K522N	.	.	131	8	117	0	A|0.859;C|0.141	154
PPID	5481	bcgsc.ca	37	4	159631800	159631800	+	Missense_Mutation	SNP	C	C	T	rs17843956	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPID	NM_005038	exon9	c.G1004A	p.G335E	.	.	155	8	245	4	C|0.980;T|0.020	226
PPIL1	51645	bcgsc.ca	37	6	36823793	36823793	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPIL1	NM_016059	exon4	c.A297G	p.A99A	.	.	127	8	65	0	.	91
PPL	5493	bcgsc.ca	37	16	4933907	4933907	+	Silent	SNP	T	T	C	rs17137389	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPL	NM_002705	exon22	c.A4749G	p.Q1583Q	.	.	139	6	141	1	T|0.902;C|0.098	95
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4945711	4945711	+	Missense_Mutation	SNP	C	C	T	rs74003551	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPL	NM_002705	exon10	c.G979A	p.E327K	.	.	62	6	75	0	C|0.997;T|0.003	95
PPP1R15A	23645	bcgsc.ca	37	19	49377873	49377873	+	Silent	SNP	G	G	A	rs35023389	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPP1R15A	NM_014330	exon2	c.G1383A	p.L461L	.	.	135	6	126	1	G|0.861;A|0.139	226
PPP1R15B	84919	bcgsc.ca	37	1	204379452	204379452	+	Missense_Mutation	SNP	T	T	C	rs2089891	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPP1R15B	NM_032833	exon1	c.A1088G	p.E363G	.	.	289	14	145	2	T|0.945;C|0.055	652
PPP1R9B	84687	bcgsc.ca	37	17	48217459	48217459	+	RNA	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPP1R9B	.	.	.	.	.	.	147	5	114	3	.	90
PPP2R2C	5522	bcgsc.ca	37	4	6377555	6377555	+	Silent	SNP	C	C	T	rs35368770	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	PPP2R2C,brain,glioma,0	PPP2R2C	NM_181876	exon4	c.G438A	p.T146T	.	.	222	15	212	3	C|0.992;T|0.008	1084
PPP2R3A	5523	bcgsc.ca	37	3	135721780	135721780	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPP2R3A	NM_002718	exon2	c.A1440G	p.L480L	.	.	145	5	159	0	.	662
PPP4R4	57718	bcgsc.ca	37	14	94725674	94725674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPP4R4	NM_058237	exon19	c.A2095G	p.K699E	.	.	196	8	246	1	.	94
PPP6R2	9701	bcgsc.ca	37	22	50832387	50832387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PPP6R2	NM_001242898	exon3	c.T50C	p.L17P	.	.	142	6	106	0	.	92
PRAMEF2	65122	bcgsc.ca	37	1	12919081	12919081	+	Missense_Mutation	SNP	C	C	T	rs45443899	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRAMEF2	NM_023014	exon2	c.C217T	p.L73F	.	.	233	10	272	9	C|0.860;T|0.140	68
PRDM11	56981	bcgsc.ca	37	11	45241134	45241134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRDM11	NM_001256695	exon6	c.T568C	p.S190P	.	.	76	4	69	1	.	91
PRDM2	7799	ucsc.edu;bcgsc.ca	37	1	14109178	14109178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRDM2	NM_015866	exon8	c.A4888G	p.S1630G	.	.	56	6	60	0	.	116
PRKDC	5591	bcgsc.ca	37	8	48744430	48744430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRKDC	.	.	.	.	.	.	99	4	122	2	.	1515
PRMT1	3276	bcgsc.ca	37	19	50185212	50185212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRMT1	NM_001536	exon4	c.A238G	p.M80V	.	.	65	4	43	0	.	91
PRPF19	27339	bcgsc.ca	37	11	60666716	60666716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRPF19	NM_014502	exon11	c.T889C	p.S297P	.	.	145	5	109	0	.	91
PRSS1	5644	bcgsc.ca	37	7	142460313	142460313	+	Silent	SNP	T	T	C	rs6666	bycluster;byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS1	NM_002769	exon4	c.T486C	p.D162D	.	.	414	18	542	4	T|0.437;C|0.563	577
PRSS1	5644	bcgsc.ca	37	7	142460865	142460865	+	Silent	SNP	T	T	C	rs6667	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS1	NM_002769	exon5	c.T738C	p.N246N	.	.	222	20	252	4	T|0.484;C|0.516	577
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27218849	27218849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS16	NM_005865	exon6	c.C620T	p.A207V	.	.	115	26	69	0	.	94
PRSS50	29122	bcgsc.ca	37	3	46755769	46755769	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS50	NM_013270	exon4	c.C693T	p.D231D	.	.	115	5	77	0	.	90
PRSS53	339105	bcgsc.ca	37	16	31096164	31096164	+	Missense_Mutation	SNP	G	G	C	rs7199949	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS53	NM_001039503	exon8	c.C1216G	p.P406A	.	.	108	9	103	1	G|0.648;C|0.352	68
PRSS54	221191	bcgsc.ca	37	16	58314433	58314433	+	Missense_Mutation	SNP	T	T	C	rs2241414	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS54	NM_001080492	exon7	c.A883G	p.T295A	.	.	285	9	316	3	T|0.904;C|0.096	70
PSAPL1	768239	bcgsc.ca	37	4	7436486	7436486	+	Missense_Mutation	SNP	C	C	A	rs11548325	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSAPL1	NM_001085382	exon1	c.G121T	p.A41S	.	.	153	9	106	0	C|0.820;A|0.180	68
PSAPL1	768239	bcgsc.ca	37	4	7436511	7436511	+	Silent	SNP	C	C	A	rs78978752	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSAPL1	NM_001085382	exon1	c.G96T	p.V32V	.	.	118	6	88	2	C|0.991;A|0.009	68
PSD2	84249	bcgsc.ca	37	5	139217287	139217287	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSD2	NM_032289	exon12	c.C1743T	p.T581T	.	.	85	4	63	0	.	91
PSG8	440533	bcgsc.ca	37	19	43268242	43268242	+	Missense_Mutation	SNP	C	C	T	rs76352186	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSG8	NM_001130167	exon2	c.G256A	p.G86S	.	.	350	12	299	7	C|0.936;T|0.064	90
PSG8	440533	bcgsc.ca	37	19	43268348	43268348	+	Silent	SNP	A	A	G	rs74660622	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSG8	NM_001130167	exon2	c.T150C	p.D50D	.	.	339	8	325	2	A|0.988;G|0.012	90
PSMC2	5701	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	102988209	102988209	+	Silent	SNP	G	G	A	rs61729405	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSMC2	NM_001204453	exon1	c.G51A	p.K17K	.	.	73	7	78	0	G|0.994;A|0.006	90
PSMD4	5710	bcgsc.ca	37	1	151237908	151237908	+	Silent	SNP	G	G	A	rs61732647	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSMD4	NM_002810	exon6	c.G477A	p.T159T	.	.	525	13	282	3	G|0.993;A|0.007	90
PSORS1C1	170679	bcgsc.ca	37	6	31107648	31107648	+	Missense_Mutation	SNP	C	C	T	rs1063646	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PSORS1C1	NM_014068	exon6	c.C398T	p.P133L	.	.	676	18	454	4	C|0.847;N|0.000	91
PTGES3	10728	bcgsc.ca	37	12	57066778	57066778	+	Missense_Mutation	SNP	T	T	C	rs141815775	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTGES3	NM_006601	exon2	c.A74G	p.K25R	.	.	270	11	265	3	T|0.997;C|0.003	90
PTPN13	5783	bcgsc.ca	37	4	87728926	87728926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPN13	NM_080685	exon45	c.A6974G	p.Q2325R	.	.	172	5	178	0	.	230
PTPN13	5783	ucsc.edu;bcgsc.ca	37	4	87695667	87695667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPN13	NM_080685	exon33	c.G5506A	p.G1836R	.	.	45	4	56	0	.	230
PTPN14	5784	bcgsc.ca	37	1	214557685	214557685	+	Missense_Mutation	SNP	C	C	A	rs12239356	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPN14	NM_005401	exon13	c.G1513T	p.V505F	.	.	360	22	206	3	C|0.945;A|0.055	290
PTPRA	5786	bcgsc.ca	37	20	2988066	2988066	+	Silent	SNP	C	C	T	rs140971102	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPRA	NM_002836	exon15	c.C906T	p.N302N	.	.	216	9	175	2	C|0.998;T|0.002	227
PTPRK	5796	bcgsc.ca	37	6	128297841	128297841	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPRK	NM_001135648	exon28	c.T3948C	p.D1316D	.	.	124	6	117	0	.	231
PTPRM	5797	bcgsc.ca	37	18	7774190	7774190	+	Missense_Mutation	SNP	T	T	A	rs35224276	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPRM	NM_001105244	exon2	c.T117A	p.S39R	.	.	378	11	385	5	T|0.667;A|0.333	228
PTPRN2	5799	bcgsc.ca	37	7	157985149	157985149	+	Missense_Mutation	SNP	C	C	G	rs3800855	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPRN2	NM_130843	exon5	c.G419C	p.S140T	.	.	44	5	39	0	C|0.634;G|0.366	295
PTPRT	11122	bcgsc.ca	37	20	40714479	40714479	+	Silent	SNP	G	G	A	rs2016647	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPRT	NM_133170	exon29	c.C3918T	p.Y1306Y	.	.	151	5	85	0	G|0.823;A|0.177	664
PTPRZ1	5803	bcgsc.ca	37	7	121513570	121513570	+	Missense_Mutation	SNP	G	G	T	rs11980387	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PTPRZ1	NM_001206838	exon1	c.G17T	p.R6L	.	.	118	6	65	1	G|0.968;T|0.032	699
PUS1	80324	bcgsc.ca	37	12	132428096	132428096	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PUS1	NM_025215	exon6	c.C1249T	p.L417L	.	.	69	4	78	0	.	577
QDPR	5860	ucsc.edu;bcgsc.ca	37	4	17503382	17503382	+	Silent	SNP	C	C	T	rs2597775	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	QDPR	NM_000320	exon4	c.G396A	p.L132L	.	.	80	10	70	1	C|0.735;T|0.265	91
QRICH2	84074	bcgsc.ca	37	17	74276783	74276783	+	Silent	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	QRICH2	NM_032134	exon10	c.C3915A	p.L1305L	.	.	279	7	212	3	.	94
RAB11FIP1	80223	bcgsc.ca	37	8	37729776	37729776	+	Silent	SNP	C	C	T	rs151253127	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RAB11FIP1	NM_001002814	exon4	c.G2544A	p.A848A	.	.	51	4	39	0	C|0.995;T|0.005	92
RAC2	5880	bcgsc.ca	37	22	37622794	37622794	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RAC2	NM_002872	exon6	c.A498G	p.K166K	.	.	82	4	40	0	.	723
RAI2	10742	bcgsc.ca	37	X	17819600	17819600	+	Silent	SNP	C	C	T	rs199687946	alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RAI2	NM_001172739	exon3	c.G531A	p.P177P	.	.	102	5	63	0	C|0.999;A|0.001	131
RAN	5901	bcgsc.ca	37	12	131359156	131359156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RAN	NM_006325	exon5	c.C313T	p.H105Y	.	.	145	5	177	0	.	847
RANBP10	57610	bcgsc.ca	37	16	67761264	67761264	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RANBP10	NM_020850	exon13	c.A1698G	p.E566E	.	.	123	5	160	0	.	227
RANBP3L	202151	bcgsc.ca	37	5	36257134	36257134	+	Missense_Mutation	SNP	G	G	A	rs16902872	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RANBP3L	NM_001161429	exon11	c.C887T	p.A296V	.	.	191	8	172	2	G|0.906;A|0.094	91
RANBP3L	202151	bcgsc.ca	37	5	36265097	36265097	+	Silent	SNP	C	C	T	rs142676189	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RANBP3L	NM_001161429	exon7	c.G519A	p.L173L	.	.	529	11	507	7	C|0.997;T|0.003	91
RAP1GAP2	23108	bcgsc.ca	37	17	2883588	2883588	+	Missense_Mutation	SNP	C	C	A	rs17762452	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RAP1GAP2	NM_015085	exon9	c.C604A	p.L202M	.	.	122	7	147	3	C|0.737;A|0.263	1
RAPGEF4	11069	bcgsc.ca	37	2	173879213	173879213	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RAPGEF4	NM_007023	exon18	c.A1680G	p.Q560Q	.	.	128	5	98	0	.	274
RARG	5916	ucsc.edu;bcgsc.ca	37	12	53605545	53605545	+	Missense_Mutation	SNP	G	G	A	rs2229774	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RARG	NM_000966	exon10	c.C1280T	p.S427L	.	.	47	5	50	0	G|0.927;A|0.073	722
RARS2	57038	bcgsc.ca	37	6	88251642	88251642	+	Silent	SNP	G	G	A	rs75794097	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RARS2	NM_020320	exon8	c.C606T	p.L202L	.	.	91	5	90	0	G|0.987;A|0.013	92
RASGRF2	5924	bcgsc.ca	37	5	80390736	80390736	+	Silent	SNP	C	C	T	rs34039392	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RASGRF2	NM_006909	exon12	c.C1680T	p.D560D	.	.	116	9	119	1	C|0.946;T|0.054	725
RASGRF2	5924	bcgsc.ca	37	5	80419537	80419537	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RASGRF2	NM_006909	exon16	c.T2547C	p.P849P	.	.	125	7	123	1	.	725
RASSF9	9182	bcgsc.ca	37	12	86199723	86199723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RASSF9	NM_005447	exon2	c.T65C	p.M22T	.	.	150	6	166	0	.	23
RB1CC1	9821	bcgsc.ca	37	8	53569194	53569194	+	Silent	SNP	C	C	T	rs16918075	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RB1CC1	NM_001083617	exon15	c.G3195A	p.A1065A	.	.	171	6	216	2	C|0.959;T|0.041	170
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20562244	20562244	+	Silent	SNP	G	G	A	rs149495397	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RBBP8	NM_203292	exon7	c.G492A	p.P164P	.	.	139	8	159	0	G|0.999;A|0.001	659
RCSD1	92241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167666539	167666539	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RCSD1	NM_052862	exon6	c.G678A	p.E226E	.	.	217	65	106	1	.	517
RECQL4	9401	ucsc.edu	37	8	145738093	145738093	+	Silent	SNP	C	C	T	rs202045203		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RECQL4	NM_004260	exon17	c.G2817A	p.A939A	.	.	45	4	53	0	.	1083
RELL2	285613	bcgsc.ca	37	5	141019577	141019577	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RELL2	NM_173828	exon5	c.A594G	p.G198G	.	.	67	5	40	2	.	90
RELN	5649	bcgsc.ca	37	7	103183315	103183315	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RELN	NM_173054	exon43	c.A6534G	p.E2178E	.	.	80	4	77	0	.	574
RELN	5649	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	103130238	103130238	+	Silent	SNP	G	G	A	rs78218774	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RELN	NM_173054	exon60	c.C9714T	p.H3238H	.	.	64	8	55	0	G|0.988;A|0.012	574
RGAG1	57529	bcgsc.ca	37	X	109695418	109695418	+	Missense_Mutation	SNP	A	A	C	rs35653272	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RGAG1	NM_020769	exon3	c.A1573C	p.M525L	.	.	47	7	48	0	A|0.984;C|0.016	132
RGPD4	285190	bcgsc.ca	37	2	108475995	108475995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RGPD4	NM_182588	exon11	c.T1619C	p.I540T	.	.	274	11	320	5	.	2
RGS20	8601	ucsc.edu;bcgsc.ca	37	8	54866657	54866657	+	Silent	SNP	A	A	G	rs113296379	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RGS20	NM_170587	exon5	c.A765G	p.E255E	.	.	149	15	210	3	A|0.986;G|0.014	227
RHBG	57127	bcgsc.ca	37	1	156347833	156347833	+	Missense_Mutation	SNP	G	G	A	rs115199763		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RHBG	NM_020407	exon3	c.G427A	p.V143I	.	.	461	21	249	4	G|0.991;A|0.009	92
RND1	27289	bcgsc.ca	37	12	49251996	49251996	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RND1	NM_014470	exon5	c.C482G	p.A161G	.	.	178	8	170	3	.	228
RNF103	7844	bcgsc.ca	37	2	86832394	86832394	+	Silent	SNP	T	T	C	rs1561253	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RNF103	NM_005667	exon4	c.A630G	p.A210A	.	.	209	9	235	2	T|0.914;C|0.086	226
RNF133	168433	bcgsc.ca	37	7	122338323	122338323	+	Missense_Mutation	SNP	C	C	T	rs149851951	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RNF133	NM_139175	exon1	c.G650A	p.R217K	.	.	280	9	350	0	C|0.999;T|0.001	227
RNF213	57674	bcgsc.ca	37	17	78261730	78261730	+	Silent	SNP	G	G	A	rs17853714	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RNF213	NM_001256071	exon4	c.G378A	p.P126P	.	.	174	8	108	2	G|0.861;A|0.139	577
RNF8	9025	bcgsc.ca	37	6	37336377	37336377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RNF8	NM_003958	exon3	c.T358C	p.Y120H	.	.	169	5	167	0	.	227
ROCK1	6093	bcgsc.ca	37	18	18549103	18549103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ROCK1	NM_005406	exon24	c.A2887G	p.T963A	.	.	83	4	103	0	.	1026
ROPN1	54763	bcgsc.ca	37	3	123688032	123688032	+	Silent	SNP	A	A	G	rs17842475	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ROPN1	NM_017578	exon7	c.T609C	p.F203F	.	.	192	6	196	3	A|0.958;G|0.042	92
RP1	6101	bcgsc.ca	37	8	55541935	55541935	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RP1	NM_006269	exon4	c.T5493C	p.H1831H	.	.	89	4	119	0	.	102
RP1L1	94137	bcgsc.ca	37	8	10466614	10466614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RP1L1	NM_178857	exon4	c.A4994G	p.K1665R	.	.	61	4	51	0	.	139
RP1L1	94137	bcgsc.ca	37	8	10469417	10469417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RP1L1	NM_178857	exon4	c.G2191C	p.D731H	.	.	67	5	70	0	.	139
RPAP1	26015	bcgsc.ca	37	15	41817285	41817285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RPAP1	NM_015540	exon15	c.T1979C	p.L660P	.	.	54	4	48	0	.	153
RPH3A	22895	bcgsc.ca	37	12	113327834	113327834	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RPH3A	NM_001143854	exon18	c.A1569G	p.K523K	.	.	154	5	146	0	.	519
RPL10A	4736	bcgsc.ca	37	6	35436605	35436605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RPL10A	NM_007104	exon2	c.A35G	p.E12G	.	.	100	6	44	0	.	91
RPL3L	6123	bcgsc.ca	37	16	1997322	1997322	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RPL3L	NM_005061	exon5	c.T561C	p.G187G	.	.	72	5	59	0	.	90
RPS6KA1	6195	bcgsc.ca	37	1	26888150	26888150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RPS6KA1	NM_001006665	exon16	c.A1613G	p.Q538R	.	.	63	4	60	1	.	510
RRP1B	23076	bcgsc.ca	37	21	45106754	45106754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	RRP1B	NM_015056	exon12	c.A1079G	p.Q360R	.	.	91	4	95	0	.	91
S100A4	6275	bcgsc.ca	37	1	153517172	153517172	+	Silent	SNP	T	T	C	rs1050923	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	S100A4	NM_002961	exon2	c.A99G	p.E33E	.	.	275	15	126	1	T|0.882;C|0.118	90
S100PBP	64766	bcgsc.ca	37	1	33291994	33291994	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	S100PBP	NM_022753	exon3	c.A294G	p.K98K	.	.	85	4	108	1	.	90
SAMD9	54809	bcgsc.ca	37	7	92732474	92732474	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SAMD9	NM_001193307	exon2	c.T2937C	p.C979C	.	.	133	5	243	2	.	140
SARS	6301	bcgsc.ca	37	1	109774392	109774392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SARS	NM_006513	exon6	c.A731G	p.D244G	.	.	84	4	90	0	.	90
SBF1P1	100133234	ucsc.edu	37	8	56363158	56363158	+	RNA	SNP	C	C	T	rs6473987	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	57	8	33	0	C|0.713;T|0.287	.
SBNO2	22904	hgsc.bcm.edu	37	19	1113608	1113609	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_014963	exon19	c.2173_2174insG	p.L725fs	.	.	148	10	69	0	.	.
SCAF4	57466	bcgsc.ca	37	21	33074666	33074666	+	Silent	SNP	A	A	C	rs77399251	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCAF4	NM_020706	exon5	c.T348G	p.L116L	.	.	372	9	294	4	A|0.958;C|0.042	90
SCAI	286205	bcgsc.ca	37	9	127828331	127828331	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCAI	NM_173690	exon3	c.A105G	p.R35R	.	.	218	6	240	0	.	138
SCARB1	949	bcgsc.ca	37	12	125271013	125271013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCARB1	NM_005505	exon11	c.T1291C	p.Y431H	.	.	65	4	58	0	.	226
SCG3	29106	bcgsc.ca	37	15	51988135	51988135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCG3	NM_013243	exon8	c.A932G	p.K311R	.	.	315	8	306	0	.	91
SCHIP1	29970	bcgsc.ca	37	3	158991647	158991647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCHIP1	NM_014575	exon1	c.G38A	p.C13Y	.	.	208	6	175	0	.	92
SCIN	85477	broad.mit.edu	37	7	12610594	12610594	+	Missense_Mutation	SNP	A	A	G	rs2240572	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCIN	NM_001112706	exon1	c.A182G	p.H61R	.	.	76	9	55	1	A|0.608;G|0.392	24
SCMH1	22955	bcgsc.ca	37	1	41618317	41618317	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCMH1	NM_001031694	exon4	c.T30C	p.C10C	.	.	88	5	119	1	.	90
SCML4	256380	bcgsc.ca	37	6	108026455	108026455	+	Silent	SNP	A	A	G	rs1546960	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCML4	NM_198081	exon8	c.T1194C	p.P398P	.	.	170	6	179	2	A|0.095;G|0.905	91
SCN4A	6329	bcgsc.ca	37	17	62018164	62018164	+	Silent	SNP	A	A	C	rs2227906	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCN4A	NM_000334	exon24	c.T5478G	p.T1826T	.	.	83	5	43	1	A|0.808;C|0.192	93
SCN4A	6329	ucsc.edu;bcgsc.ca	37	17	62018239	62018239	+	Silent	SNP	G	G	A	rs2227907	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCN4A	NM_000334	exon24	c.C5403T	p.A1801A	.	.	81	10	37	0	G|0.844;A|0.156	93
SCNM1	79005	bcgsc.ca	37	1	151139822	151139822	+	Silent	SNP	A	A	G	rs113895594	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCNM1	NM_024041	exon5	c.A330G	p.T110T	.	.	178	8	86	0	A|0.996;G|0.004	94
SCRN2	90507	bcgsc.ca	37	17	45916018	45916018	+	Missense_Mutation	SNP	C	C	G	rs35901087	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SCRN2	NM_138355	exon6	c.G817C	p.E273Q	.	.	106	7	66	0	C|0.716;G|0.284	91
SDHA	6389	bcgsc.ca	37	5	235364	235364	+	Silent	SNP	C	C	T	rs35277230	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SDHA	NM_004168	exon9	c.C1170T	p.F390F	.	.	178	13	140	2	C|0.899;T|0.101	226
SDK1	221935	bcgsc.ca	37	7	4215426	4215426	+	Silent	SNP	G	G	A	rs149497835		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SDK1	NM_152744	exon34	c.G4956A	p.T1652T	.	.	50	4	56	0	G|1.000;A|0.000	138
SDK2	54549	ucsc.edu;bcgsc.ca	37	17	71398170	71398170	+	Silent	SNP	G	G	C	rs9302962	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SDK2	NM_001144952	exon19	c.C2595G	p.T865T	.	.	69	10	55	0	G|0.547;C|0.453	24
SEMA3C	10512	bcgsc.ca	37	7	80387766	80387766	+	Silent	SNP	C	C	T	rs1058425	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SEMA3C	NM_006379	exon15	c.G1524A	p.Q508Q	.	.	108	9	117	1	C|0.633;T|0.367	515
SEMA3C	10512	bcgsc.ca	37	7	80458063	80458063	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SEMA3C	NM_006379	exon4	c.104-2A>G	.	.	.	76	4	119	0	.	515
SENP1	29843	bcgsc.ca	37	12	48459463	48459463	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SENP1	NM_001267594	exon11	c.A1035G	p.L345L	.	.	162	6	144	0	.	660
SERPINB13	5275	bcgsc.ca	37	18	61261606	61261606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SERPINB13	NM_012397	exon6	c.T490C	p.F164L	.	.	164	5	179	0	.	227
SERPINH1	871	bcgsc.ca	37	11	75280155	75280155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SERPINH1	NM_001207014	exon5	c.A893G	p.Q298R	.	.	86	4	83	0	.	228
SERTAD4-AS1	574036	bcgsc.ca	37	1	210407047	210407047	+	RNA	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	200	39	50	7	.	.
SEZ6	124925	ucsc.edu;bcgsc.ca	37	17	27286851	27286851	+	Missense_Mutation	SNP	T	T	C	rs1976165	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SEZ6	NM_001098635	exon8	c.A1636G	p.T546A	.	.	88	9	66	0	T|0.664;C|0.336	90
SEZ6L2	26470	bcgsc.ca	37	16	29907111	29907111	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SEZ6L2	NM_001243332	exon4	c.C582T	p.S194S	.	.	62	4	47	1	.	92
SF3B2	10992	bcgsc.ca	37	11	65826704	65826704	+	Silent	SNP	G	G	A	rs1049872	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SF3B2	NM_006842	exon11	c.G1215A	p.K405K	.	.	110	5	117	0	G|0.791;A|0.209	92
SGK223	0	ucsc.edu;bcgsc.ca	37	8	8234714	8234714	+	Missense_Mutation	SNP	C	C	T	rs3896980	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001080826	exon2	c.G1205A	p.R402Q	.	.	31	7	37	0	C|0.612;T|0.388	.
SGSH	6448	bcgsc.ca	37	17	78184423	78184423	+	Missense_Mutation	SNP	T	T	C	rs148876719	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SGSH	NM_000199	exon8	c.A1337G	p.H446R	.	.	77	5	56	0	T|0.999;C|0.001	91
SH3GL2	6456	bcgsc.ca	37	9	17747070	17747070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3GL2	NM_003026	exon2	c.A52G	p.S18G	.	.	142	5	162	1	.	91
SH3RF2	153769	hgsc.bcm.edu;bcgsc.ca	37	5	145393600	145393600	+	Silent	SNP	C	C	T	rs35761990	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3RF2	NM_152550	exon5	c.C1035T	p.D345D	.	.	84	5	88	0	C|0.990;T|0.010	92
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148407322	148407322	+	Missense_Mutation	SNP	C	C	T	rs138040787		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3TC2	NM_024577	exon11	c.G1973A	p.R658H	.	.	60	14	46	0	C|1.000;T|0.000	92
SHISA9	729993	bcgsc.ca	37	16	13002336	13002336	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001145205	exon2	c.G564A	p.R188R	.	.	49	4	81	0	.	.
SHPRH	257218	bcgsc.ca	37	6	146256570	146256570	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SHPRH	NM_173082	exon12	c.T2577C	p.F859F	.	.	82	5	90	0	.	92
SIL1	64374	bcgsc.ca	37	5	138456815	138456815	+	Silent	SNP	T	T	C	rs3088052	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SIL1	NM_001037633	exon4	c.A153G	p.T51T	.	.	357	15	307	2	T|0.513;C|0.487	90
SIPA1	6494	bcgsc.ca	37	11	65418052	65418052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SIPA1	NM_006747	exon16	c.A2995G	p.R999G	.	.	155	9	91	0	.	90
SIPA1L1	26037	bcgsc.ca	37	14	72191504	72191504	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SIPA1L1	NM_015556	exon17	c.A4629G	p.K1543K	.	.	105	5	122	0	.	156
SLC14A2	8170	bcgsc.ca	37	18	43204726	43204726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC14A2	NM_001242692	exon3	c.A97G	p.T33A	.	.	63	4	62	0	.	93
SLC17A6	57084	bcgsc.ca	37	11	22399248	22399248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC17A6	NM_020346	exon12	c.G1711A	p.D571N	.	.	121	6	132	1	.	580
SLC1A3	6507	bcgsc.ca	37	5	36680623	36680623	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC1A3	NM_004172	exon8	c.T1221C	p.A407A	.	.	111	5	102	0	.	90
SLC20A2	6575	bcgsc.ca	37	8	42294901	42294901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC20A2	NM_001257181	exon8	c.T1129C	p.Y377H	.	.	181	6	154	2	.	92
SLC24A2	25769	bcgsc.ca	37	9	19786367	19786367	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC24A2	NM_001193288	exon1	c.A498G	p.E166E	.	.	71	4	72	0	.	517
SLC25A29	123096	ucsc.edu	37	14	100759046	100759046	+	Silent	SNP	C	C	A	rs3825555	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC25A29	NM_001039355	exon4	c.G486T	p.T162T	.	.	18	4	18	1	C|0.465;A|0.535	91
SLC27A5	10998	bcgsc.ca	37	19	59012663	59012663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC27A5	NM_012254	exon4	c.A1172G	p.N391S	.	.	73	4	31	0	.	90
SLC28A3	64078	bcgsc.ca	37	9	86955535	86955535	+	Missense_Mutation	SNP	C	C	T	rs11568403	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC28A3	NM_001199633	exon1	c.G14A	p.S5N	.	.	196	9	224	3	C|0.983;G|0.000;T|0.017	94
SLC35A1	10559	bcgsc.ca	37	6	88210960	88210960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC35A1	NM_006416	exon4	c.T439C	p.S147P	.	.	197	6	216	1	.	90
SLC35A3	23443	bcgsc.ca	37	1	100459132	100459132	+	Missense_Mutation	SNP	G	G	A	rs74102304	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC35A3	NM_001271685	exon2	c.G148A	p.V50I	.	.	191	7	207	1	G|0.962;A|0.038	90
SLC35A5	55032	bcgsc.ca	37	3	112299732	112299732	+	Silent	SNP	A	A	G	rs2292442	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC35A5	NM_017945	exon6	c.A768G	p.E256E	.	.	124	6	130	0	A|0.838;G|0.162	91
SLC36A2	153201	bcgsc.ca	37	5	150714955	150714955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC36A2	NM_181776	exon6	c.T679C	p.F227L	.	.	164	5	154	0	.	91
SLC39A12	221074	bcgsc.ca	37	10	18250528	18250528	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC39A12	NM_152725	exon3	c.C280T	p.L94L	.	.	169	6	176	1	.	154
SLC44A3	126969	bcgsc.ca	37	1	95294089	95294089	+	Silent	SNP	T	T	C	rs2640065	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC44A3	NM_001114106	exon5	c.T456C	p.Y152Y	.	.	238	15	237	2	T|0.790;C|0.210	91
SLC44A5	204962	bcgsc.ca	37	1	75708675	75708675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC44A5	NM_152697	exon8	c.G367A	p.E123K	.	.	70	4	98	0	.	95
SLC45A4	57210	bcgsc.ca	37	8	142225990	142225990	+	Silent	SNP	G	G	A	rs2288998	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC45A4	NM_001080431	exon6	c.C1656T	p.V552V	.	.	93	9	48	0	G|0.706;A|0.294	70
SLC4A11	83959	bcgsc.ca	37	20	3209012	3209012	+	Silent	SNP	C	C	T	rs58757394	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC4A11	NM_001174090	exon19	c.G2580A	p.T860T	.	.	180	13	108	3	C|0.937;T|0.063	91
SLC5A11	115584	hgsc.bcm.edu;bcgsc.ca	37	16	24888677	24888677	+	Silent	SNP	G	G	A	rs9932619	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC5A11	NM_052944	exon7	c.G576A	p.T192T	.	.	133	10	143	0	G|0.962;A|0.038	92
SLC5A11	115584	ucsc.edu	37	16	24918048	24918048	+	Missense_Mutation	SNP	C	C	T	rs17772929	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC5A11	NM_001258414	exon10	c.C679T	p.R227C	.	.	77	12	83	1	C|0.678;T|0.322	92
SLC6A20	54716	bcgsc.ca	37	3	45812786	45812786	+	Silent	SNP	G	G	A	rs34458611	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC6A20	NM_020208	exon6	c.C858T	p.T286T	.	.	204	9	140	2	G|0.970;A|0.030	92
SLC7A11	23657	bcgsc.ca	37	4	139140494	139140494	+	Silent	SNP	G	G	C	rs6838248	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC7A11	NM_014331	exon5	c.C672G	p.A224A	.	.	207	9	223	2	G|0.601;C|0.399	91
SLC7A13	157724	bcgsc.ca	37	8	87230022	87230022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC7A13	NM_138817	exon3	c.T856C	p.S286P	.	.	100	4	146	0	.	90
SLC7A2	6542	bcgsc.ca	37	8	17396415	17396415	+	Missense_Mutation	SNP	G	G	C	rs13259978	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC7A2	NM_001164771	exon1	c.G82C	p.D28H	.	.	75	7	111	0	A|0.011;C|0.200;G|0.789	93
SLC9A8	23315	bcgsc.ca	37	20	48466166	48466166	+	Silent	SNP	G	G	A	rs6012755	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLC9A8	NM_001260491	exon6	c.G483A	p.G161G	.	.	758	18	536	7	G|0.845;A|0.155	91
SLCO5A1	81796	bcgsc.ca	37	8	70588878	70588878	+	Silent	SNP	T	T	C	rs10448034	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLCO5A1	NM_030958	exon9	c.A2055G	p.A685A	.	.	118	7	152	1	T|0.864;C|0.136	94
SLFN12L	100506736	bcgsc.ca	37	17	33802485	33802485	+	Silent	SNP	A	A	G	rs181468883	by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLFN12L	NM_001195790	exon4	c.T1224C	p.T408T	.	.	177	6	139	0	A|0.999;G|0.000	23
SLFN13	146857	bcgsc.ca	37	17	33769211	33769211	+	Missense_Mutation	SNP	C	C	T	rs77814846	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLFN13	NM_144682	exon5	c.G1293A	p.M431I	.	.	260	8	207	2	C|0.987;T|0.013	91
SLITRK6	84189	bcgsc.ca	37	13	86368996	86368996	+	Missense_Mutation	SNP	C	C	T	rs181056108		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SLITRK6	NM_032229	exon2	c.G1648A	p.G550R	.	.	229	8	158	2	C|0.996;T|0.004	137
SMARCB1	6598	bcgsc.ca	37	22	24159054	24159054	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	SMARCB1,NS,malignant_melanoma,+1	SMARCB1	NM_003073	exon6	c.A726G	p.R242R	.	.	90	6	81	0	.	2699
SMC2	10592	bcgsc.ca	37	9	106864782	106864782	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SMC2	NM_006444	exon9	c.A948G	p.A316A	.	.	214	6	222	0	.	210
SMC6	79677	bcgsc.ca	37	2	17897488	17897488	+	Missense_Mutation	SNP	T	T	C	rs35195207	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SMC6	NM_001142286	exon15	c.A1390G	p.R464G	.	.	355	16	307	4	T|0.825;C|0.175	292
SMEK3P	139420	ucsc.edu	37	X	27480778	27480778	+	RNA	SNP	T	T	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	18	10	12	0	.	.
SMG1	23049	bcgsc.ca	37	16	18841403	18841403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SMG1	NM_015092	exon53	c.A8978G	p.K2993R	.	.	227	8	295	2	.	1160
SMPDL3B	27293	bcgsc.ca	37	1	28282585	28282585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SMPDL3B	NM_001009568	exon7	c.A997G	p.S333G	.	.	58	4	66	0	.	93
SMYD1	150572	bcgsc.ca	37	2	88387557	88387557	+	Missense_Mutation	SNP	A	A	C	rs1542087	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SMYD1	NM_198274	exon3	c.A491C	p.Q164P	.	.	228	12	160	3	A|0.865;C|0.135	229
SNAP47	116841	bcgsc.ca	37	1	227935417	227935417	+	Missense_Mutation	SNP	C	C	T	rs58295986	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNAP47	NM_053052	exon2	c.C115T	p.R39C	.	.	235	8	126	2	C|0.978;T|0.022	91
SND1	27044	bcgsc.ca	37	7	127341244	127341244	+	Missense_Mutation	SNP	T	T	G	rs144408630		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SND1	NM_014390	exon5	c.T456G	p.C152W	.	.	127	7	132	1	T|0.998;G|0.002	92
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96952176	96952176	+	Silent	SNP	C	C	T	rs115923152	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNRNP200	NM_014014	exon29	c.G3876A	p.P1292P	.	.	54	11	33	0	C|0.995;T|0.005	162
SNTG2	54221	bcgsc.ca	37	2	1079302	1079302	+	Silent	SNP	A	A	G	rs189503863		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNTG2	NM_018968	exon2	c.A171G	p.Q57Q	.	.	119	9	97	2	A|0.999;G|0.000	136
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2317903	2317903	+	Silent	SNP	G	G	A	rs78286162		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SNX8	NM_013321	exon2	c.C132T	p.I44I	.	.	86	11	62	0	G|0.999;A|0.001	290
SORBS2	8470	bcgsc.ca	37	4	186515062	186515062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SORBS2	NM_001270771	exon22	c.A3412G	p.N1138D	.	.	119	5	117	0	.	91
SORCS2	57537	bcgsc.ca	37	4	7736024	7736024	+	Silent	SNP	C	C	T	rs114114854	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SORCS2	NM_020777	exon25	c.C3234T	p.G1078G	.	.	161	8	101	3	C|0.978;T|0.022	91
SOS2	6655	bcgsc.ca	37	14	50585248	50585248	+	Silent	SNP	C	C	T	rs2227276	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SOS2	NM_006939	exon23	c.G3813A	p.P1271P	.	.	283	7	164	0	T|0.202;C|0.798	849
SP140	11262	bcgsc.ca	37	2	231120209	231120209	+	Missense_Mutation	SNP	G	G	C	rs138339396		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SP140	NM_007237	exon12	c.G1202C	p.R401P	.	.	166	9	141	8	G|0.993;C|0.007	90
SP1	6667	ucsc.edu;bcgsc.ca	37	12	53805020	53805020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SP1	NM_138473	exon6	c.T2354C	p.F785S	.	.	36	4	30	0	.	228
SP3	6670	bcgsc.ca	37	2	174783404	174783404	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SP3	NM_003111	exon5	c.A1749G	p.E583E	.	.	174	5	189	0	.	227
SPACA7	122258	bcgsc.ca	37	13	113052388	113052388	+	Silent	SNP	A	A	G	rs2296895	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPACA7	NM_145248	exon3	c.A177G	p.L59L	.	.	155	11	101	2	A|0.363;G|0.637	154
SPAG7	9552	bcgsc.ca	37	17	4864100	4864100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPAG7	NM_004890	exon2	c.A134G	p.K45R	.	.	377	14	498	1	.	91
SPATA21	374955	bcgsc.ca	37	1	16731510	16731510	+	Missense_Mutation	SNP	C	C	G	rs525409	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPATA21	NM_198546	exon8	c.G763C	p.V255L	.	.	72	6	67	0	C|0.774;G|0.226	155
SPATA31D5P	347127	bcgsc.ca	37	9	84531584	84531584	+	RNA	SNP	T	T	C	rs111518013	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	388	11	372	6	T|0.980;C|0.020	.
SPDYE1	285955	bcgsc.ca	37	7	44046934	44046934	+	Missense_Mutation	SNP	G	G	A	rs200388629	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	SPDYE1,NS,carcinoma,-2	SPDYE1	NM_175064	exon5	c.G700A	p.G234R	.	.	299	13	374	9	G|0.981;A|0.019	91
SPECC1	92521	bcgsc.ca	37	17	20013802	20013802	+	Silent	SNP	G	G	A	rs3764436	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPECC1	NM_001033553	exon3	c.G210A	p.V70V	.	.	113	7	138	4	G|0.892;A|0.108	639
SPEN	23013	bcgsc.ca	37	1	16265904	16265904	+	Silent	SNP	T	T	A	rs41269155	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPEN	NM_015001	exon15	c.T10977A	p.I3659I	.	.	217	11	205	1	T|0.933;A|0.067	298
SPIRE2	84501	bcgsc.ca	37	16	89930001	89930001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPIRE2	NM_032451	exon11	c.A1693G	p.S565G	.	.	63	4	50	0	.	90
SPOCD1	90853	bcgsc.ca	37	1	32265037	32265037	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPOCD1	NM_144569	exon7	c.T1833C	p.T611T	.	.	103	6	118	1	.	158
SPON1	10418	broad.mit.edu;mdanderson.org	37	11	14282206	14282206	+	RNA	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPON1	.	.	.	.	.	.	119	11	105	1	.	1
SPPL2A	84888	bcgsc.ca	37	15	51031976	51031976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPPL2A	NM_032802	exon6	c.A634G	p.K212E	.	.	258	8	262	0	.	90
SPTA1	6708	bcgsc.ca	37	1	158627315	158627315	+	Silent	SNP	T	T	C	rs16840450	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPTA1	NM_003126	exon19	c.A2757G	p.E919E	.	.	478	21	287	3	T|0.901;C|0.099	142
SPTB	6710	bcgsc.ca	37	14	65260343	65260343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPTB	NM_001024858	exon13	c.A2038G	p.K680E	.	.	149	5	207	2	.	100
SPTB	6710	bcgsc.ca	37	14	65266625	65266625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPTB	NM_001024858	exon8	c.A904G	p.K302E	.	.	72	4	83	2	.	100
SPTBN1	6711	bcgsc.ca	37	2	54849508	54849508	+	Silent	SNP	A	A	G	rs2228365	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SPTBN1	NM_003128	exon9	c.A948G	p.E316E	.	.	388	18	428	7	A|0.895;G|0.105	140
SQLE	6713	bcgsc.ca	37	8	126030959	126030959	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SQLE	NM_003129	exon9	c.T1434C	p.S478S	.	.	161	6	163	0	.	523
SQRDL	58472	bcgsc.ca	37	15	45981348	45981348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SQRDL	NM_021199	exon9	c.G1228A	p.E410K	.	.	196	8	142	1	.	91
SQSTM1	8878	bcgsc.ca	37	5	179260649	179260649	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SQSTM1	NM_003900	exon7	c.A1032G	p.K344K	.	.	98	4	107	0	.	92
SRD5A1	6715	bcgsc.ca	37	5	6651970	6651970	+	Silent	SNP	A	A	G	rs3822430	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SRD5A1	NM_001047	exon2	c.A309G	p.P103P	.	.	459	18	408	3	A|0.666;G|0.334	90
SRD5A1	6715	bcgsc.ca	37	5	6652009	6652009	+	Silent	SNP	G	G	A	rs8192186	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SRD5A1	NM_001047	exon2	c.G348A	p.A116A	.	.	471	16	451	3	G|0.652;A|0.348	90
SRRM2	23524	bcgsc.ca	37	16	2809374	2809374	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SRRM2	NM_016333	exon8	c.A711G	p.K237K	.	.	70	4	102	0	.	93
SRRM4	84530	bcgsc.ca	37	12	119588962	119588962	+	Missense_Mutation	SNP	G	G	A	rs2723880	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SRRM4	NM_194286	exon10	c.G1217A	p.R406Q	.	.	56	5	51	0	G|0.713;A|0.287	2
ST6GAL2	84620	bcgsc.ca	37	2	107459944	107459944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ST6GAL2	NM_032528	exon2	c.C490T	p.P164S	.	.	131	9	105	1	.	191
ST6GAL2	84620	ucsc.edu;bcgsc.ca	37	2	107459919	107459919	+	Missense_Mutation	SNP	C	C	T	rs76671923	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ST6GAL2	NM_032528	exon2	c.G515A	p.R172Q	.	.	123	13	96	0	C|0.984;T|0.016	191
STIL	6491	bcgsc.ca	37	1	47716901	47716901	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	STIL	NM_001048166	exon17	c.A3774G	p.Q1258Q	.	.	229	6	255	0	.	659
STPG1	90529	bcgsc.ca	37	1	24718079	24718079	+	Missense_Mutation	SNP	C	C	A	rs560219	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001199012	exon3	c.G161T	p.S54I	.	.	159	6	174	3	C|0.758;A|0.242	.
STRADA	92335	bcgsc.ca	37	17	61791388	61791388	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	STRADA	NM_001003787	exon5	c.T204C	p.C68C	.	.	156	5	151	0	.	547
STRC	161497	bcgsc.ca	37	15	43895540	43895540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	STRC	NM_153700	exon23	c.A4445G	p.E1482G	.	.	85	4	71	0	.	90
STXBP5	134957	bcgsc.ca	37	6	147581823	147581823	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	STXBP5	NM_139244	exon5	c.T504C	p.I168I	.	.	205	6	217	1	.	90
SUPT7L	9913	bcgsc.ca	37	2	27880499	27880499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SUPT7L	NM_014860	exon4	c.T457C	p.S153P	.	.	102	6	81	0	.	92
SURF4	6836	bcgsc.ca	37	9	136230449	136230449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SURF4	NM_033161	exon6	c.T730C	p.S244P	.	.	54	4	53	0	.	90
SUV39H2	79723	bcgsc.ca	37	10	14938954	14938954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SUV39H2	NM_001193426	exon3	c.A287G	p.D96G	.	.	73	4	79	0	.	290
SYCP1	6847	bcgsc.ca	37	1	115537546	115537546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYCP1	NM_003176	exon32	c.G2837A	p.G946E	.	.	293	14	372	3	.	91
SYNE1	23345	bcgsc.ca	37	6	152469255	152469255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYNE1	NM_182961	exon137	c.A24901G	p.R8301G	.	.	66	4	62	0	.	607
SYNE2	23224	bcgsc.ca	37	14	64529479	64529479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYNE2	NM_182914	exon50	c.A10078G	p.N3360D	.	.	197	6	147	0	.	164
SYNE4	163183	bcgsc.ca	37	19	36497734	36497734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001039876	exon4	c.T536C	p.I179T	.	.	94	6	50	1	.	.
SYNPO2	171024	bcgsc.ca	37	4	119948355	119948355	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYNPO2	NM_001128934	exon3	c.A831G	p.G277G	.	.	110	5	135	0	.	92
SYNPO2L	79933	ucsc.edu;bcgsc.ca	37	10	75406912	75406912	+	Missense_Mutation	SNP	G	G	T	rs34163229	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYNPO2L	NM_001114133	exon4	c.C2498A	p.S833Y	.	.	53	8	50	0	G|0.842;T|0.158	91
SYNRG	11276	bcgsc.ca	37	17	35937637	35937637	+	Missense_Mutation	SNP	T	T	C	rs12602536	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYNRG	NM_007247	exon7	c.A664G	p.T222A	.	.	197	7	147	0	C|0.151;T|0.849	92
SYT3	84258	bcgsc.ca	37	19	51133356	51133356	+	Silent	SNP	C	C	G	rs10407511	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SYT3	NM_032298	exon3	c.G747C	p.R249R	.	.	150	12	99	1	C|0.328;G|0.672	155
T	6862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166579327	166579327	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	T	NM_003181	exon4	c.T473A	p.I158N	.	.	93	13	101	1	.	516
TAB2	23118	bcgsc.ca	37	6	149700417	149700417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAB2	NM_015093	exon5	c.A1366G	p.T456A	.	.	70	4	74	0	.	227
TACC2	10579	bcgsc.ca	37	10	123846920	123846920	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACC2	NM_206862	exon4	c.T4905C	p.S1635S	.	.	75	4	68	2	.	296
TACC2	10579	ucsc.edu;bcgsc.ca	37	10	123845611	123845611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACC2	NM_206862	exon4	c.A3596G	p.E1199G	.	.	41	4	30	0	.	296
TACC3	10460	bcgsc.ca	37	4	1725160	1725160	+	Silent	SNP	G	G	A	rs35624862	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACC3	NM_006342	exon2	c.G12A	p.Q4Q	.	.	293	13	310	3	G|0.978;A|0.022	91
TACC3	10460	bcgsc.ca	37	4	1746330	1746330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACC3	NM_006342	exon14	c.A2309G	p.H770R	.	.	98	5	61	0	.	91
TACR1	6869	ucsc.edu	37	2	75425728	75425728	+	Silent	SNP	A	A	G	rs6715729	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACR1	NM_001058	exon1	c.T333C	p.F111F	.	.	73	7	61	2	A|0.425;G|0.575	523
TACR2	6865	bcgsc.ca	37	10	71176012	71176012	+	Missense_Mutation	SNP	A	A	G	rs5030920	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TACR2	NM_001057	exon1	c.T68C	p.I23T	.	.	106	9	107	2	A|0.748;G|0.252	522
TADA3	10474	bcgsc.ca	37	3	9831224	9831224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TADA3	NM_133480	exon4	c.A533G	p.K178R	.	.	103	5	124	0	.	226
TAF1A	9015	bcgsc.ca	37	1	222753212	222753212	+	Missense_Mutation	SNP	A	A	C	rs17163271	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAF1A	NM_005681	exon4	c.T294G	p.I98M	.	.	222	15	108	1	A|0.968;C|0.032	44
TAF4B	6875	bcgsc.ca	37	18	23872245	23872245	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAF4B	NM_005640	exon8	c.A1626G	p.Q542Q	.	.	144	5	134	1	.	71
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23807168	23807168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAF4B	NM_005640	exon1	c.C271T	p.P91S	.	.	200	33	155	0	.	71
TALDO1	6888	bcgsc.ca	37	11	755962	755962	+	Missense_Mutation	SNP	C	C	G	rs149640294	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TALDO1	NM_006755	exon2	c.C181G	p.L61V	.	.	73	4	61	0	C|0.999;G|0.001	90
TAP2	6891	bcgsc.ca	37	6	32790089	32790089	+	Missense_Mutation	SNP	G	G	A	rs16870908	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAP2	NM_018833	exon12	c.C1939T	p.L647F	.	.	435	20	381	7	G|0.893;A|0.107	90
TARM1	441864	bcgsc.ca	37	19	54577305	54577305	+	Silent	SNP	C	C	T	rs58216808		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001135686	exon4	c.G525A	p.A175A	.	.	191	7	143	1	C|0.988;T|0.012	.
TARS	6897	bcgsc.ca	37	5	33461355	33461355	+	Silent	SNP	G	G	A	rs2270905	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TARS	NM_001258438	exon14	c.G1605A	p.P535P	.	.	248	10	274	3	G|0.815;A|0.185	92
TAS2R38	5726	bcgsc.ca	37	7	141672705	141672705	+	Missense_Mutation	SNP	G	G	A	rs1726866	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAS2R38	NM_176817	exon1	c.C785T	p.A262V	.	.	153	8	194	2	G|0.560;A|0.440	92
TBC1D10B	26000	bcgsc.ca	37	16	30376438	30376438	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_015527	exon3	c.A1152G	p.P384P	.	.	130	6	139	0	.	.
TBC1D2	55357	hgsc.bcm.edu;bcgsc.ca	37	9	100991356	100991356	+	Missense_Mutation	SNP	G	G	A	rs139062706		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TBC1D2	NM_001267571	exon5	c.C856T	p.R286C	.	.	196	8	216	0	G|0.999;A|0.001	93
TBC1D3P5	440419	ucsc.edu	37	17	25750970	25750970	+	RNA	SNP	G	G	A	rs9892881	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	31	6	11	0	G|0.419;A|0.581	.
TBC1D9	23158	mdanderson.org	37	4	141543997	141543997	+	Silent	SNP	G	G	A	rs1560440	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TBC1D9	NM_015130	exon21	c.C3153T	p.H1051H	.	.	54	10	51	2	G|0.209;A|0.791	23
TBP	6908	bcgsc.ca	37	6	170878847	170878847	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TBP	NM_003194	exon6	c.C825T	p.L275L	.	.	125	5	139	0	.	91
TBX1	6899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	19751756	19751756	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	TBX1,NS,carcinoma,+1	TBX1	NM_080647	exon5	c.G591A	p.P197P	.	.	69	22	47	0	.	154
TBX22	50945	bcgsc.ca	37	X	79286446	79286446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TBX22	NM_016954	exon8	c.T1399C	p.S467P	.	.	156	6	151	0	.	628
TCEB2	6923	bcgsc.ca	37	16	2821573	2821573	+	Missense_Mutation	SNP	C	C	T	rs8017	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TCEB2	NM_207013	exon5	c.G386A	p.S129N	.	.	154	12	162	1	C|0.568;T|0.432	90
TCF25	22980	bcgsc.ca	37	16	89977057	89977057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TCF25	NM_014972	exon17	c.A1858G	p.N620D	.	.	137	5	155	0	.	90
TCF7	6932	bcgsc.ca	37	5	133478489	133478489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TCF7	NM_003202	exon7	c.T833C	p.L278P	.	.	111	5	145	1	.	90
TCTN2	79867	bcgsc.ca	37	12	124179417	124179417	+	Silent	SNP	T	T	C	rs7966867	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TCTN2	NM_024809	exon10	c.T1128C	p.P376P	.	.	364	14	400	5	C|0.521;N|0.000	91
TCTN2	79867	bcgsc.ca	37	12	124191330	124191330	+	Silent	SNP	C	C	T	rs150634667	bycluster;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TCTN2	NM_024809	exon16	c.C1827T	p.D609D	.	.	141	6	126	0	C|1.000;T|0.000	91
TEAD1	7003	bcgsc.ca	37	11	12958654	12958654	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TEAD1	NM_021961	exon13	c.1168-2A>G	.	.	.	138	5	162	0	.	90
TECPR2	9895	bcgsc.ca	37	14	102912225	102912225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TECPR2	NM_001172631	exon13	c.T3016C	p.W1006R	.	.	66	4	61	0	.	92
TEX26	122046	bcgsc.ca	37	13	31540466	31540466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_152325	exon5	c.C577A	p.P193T	.	.	95	5	114	1	.	.
TGS1	96764	bcgsc.ca	37	8	56715046	56715046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TGS1	NM_024831	exon9	c.A1880G	p.K627R	.	.	75	4	82	0	.	227
THAP10	56906	bcgsc.ca	37	15	71184495	71184495	+	Silent	SNP	A	A	G	rs2955035	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	THAP10	NM_020147	exon1	c.T117C	p.G39G	.	.	182	15	70	1	A|0.477;G|0.523	92
THNSL2	55258	bcgsc.ca	37	2	88482234	88482234	+	Silent	SNP	A	A	G	rs73949231	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	THNSL2	NM_018271	exon5	c.A819G	p.Q273Q	.	.	173	8	155	2	A|0.975;G|0.025	91
THSD1	55901	bcgsc.ca	37	13	52952575	52952575	+	Silent	SNP	G	G	A	rs9536042	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	THSD1	NM_018676	exon5	c.C1530T	p.A510A	.	.	118	8	91	0	G|0.933;A|0.067	94
TIMMDC1	51300	bcgsc.ca	37	3	119219573	119219573	+	Missense_Mutation	SNP	A	A	G	rs11539377	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TIMMDC1	NM_016589	exon2	c.A226G	p.N76D	.	.	268	12	258	4	A|0.828;G|0.172	91
TINAG	27283	bcgsc.ca	37	6	54191686	54191686	+	Missense_Mutation	SNP	C	C	T	rs41276062	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TINAG	NM_014464	exon4	c.C596T	p.P199L	.	.	385	15	266	2	C|0.877;T|0.123	93
TLN2	83660	bcgsc.ca	37	15	63092652	63092652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TLN2	NM_015059	exon46	c.T6320C	p.V2107A	.	.	62	5	60	0	.	573
TM2D2	83877	bcgsc.ca	37	8	38851079	38851079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TM2D2	NM_078473	exon3	c.A416G	p.N139S	.	.	63	4	85	0	.	90
TM2D2	83877	bcgsc.ca	37	8	38851161	38851161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TM2D2	NM_078473	exon3	c.A334G	p.S112G	.	.	63	4	63	0	.	90
TMC5	79838	bcgsc.ca	37	16	19501890	19501890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMC5	NM_001105248	exon18	c.T2747C	p.L916P	.	.	249	7	296	1	.	91
TMC8	147138	bcgsc.ca	37	17	76131070	76131070	+	Silent	SNP	G	G	A	rs12452890	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMC8	NM_152468	exon9	c.G1107A	p.E369E	.	.	113	8	78	0	G|0.421;A|0.579	90
TMEM132C	92293	bcgsc.ca	37	12	129190545	129190545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM132C	NM_001136103	exon9	c.T3032C	p.L1011P	.	.	73	6	46	2	.	68
TMEM140	55281	bcgsc.ca	37	7	134849577	134849577	+	Silent	SNP	A	A	C	rs2288237	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM140	NM_018295	exon2	c.A384C	p.A128A	.	.	179	10	154	4	A|0.538;C|0.462	153
TMEM143	55260	bcgsc.ca	37	19	48846646	48846646	+	Silent	SNP	C	C	T	rs11672365	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM143	NM_018273	exon5	c.G627A	p.G209G	.	.	59	5	52	1	C|0.986;T|0.014	90
TMEM214	54867	bcgsc.ca	37	2	27262976	27262976	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM214	NM_017727	exon15	c.T1701C	p.A567A	.	.	101	5	96	0	.	115
TMEM220	388335	bcgsc.ca	37	17	10628357	10628357	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM220	NM_001004313	exon4	c.A258G	p.Q86Q	.	.	120	5	165	0	.	90
TMEM237	65062	bcgsc.ca	37	2	202501544	202501544	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001044385	exon4	c.A201G	p.P67P	.	.	78	4	120	0	.	.
TMEM256	254863	bcgsc.ca	37	17	7306700	7306700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_152766	exon3	c.A127G	p.K43E	.	.	164	5	191	0	.	.
TMEM38A	79041	bcgsc.ca	37	19	16797202	16797202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM38A	NM_024074	exon5	c.A658G	p.M220V	.	.	53	4	41	0	.	92
TMEM59L	25789	bcgsc.ca	37	19	18726856	18726856	+	Silent	SNP	T	T	C	rs709679	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM59L	NM_012109	exon4	c.T480C	p.L160L	.	.	345	14	236	3	T|0.504;C|0.496	94
TMEM81	388730	bcgsc.ca	37	1	205052723	205052723	+	Silent	SNP	C	C	T	rs10494858	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM81	NM_203376	exon1	c.G726A	p.V242V	.	.	284	13	160	0	C|0.901;T|0.099	68
TMEM8A	58986	bcgsc.ca	37	16	427479	427479	+	Missense_Mutation	SNP	T	T	C	rs11248931	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM8A	NM_021259	exon3	c.A406G	p.T136A	.	.	69	4	71	0	T|0.463;C|0.537	92
TMEM8B	51754	bcgsc.ca	37	9	35846538	35846538	+	Silent	SNP	C	C	T	rs16932715	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM8B	NM_001042590	exon9	c.C570T	p.C190C	.	.	80	6	57	0	C|0.991;T|0.009	91
TMEM95	339168	bcgsc.ca	37	17	7258481	7258481	+	Missense_Mutation	SNP	C	C	T	rs72840988	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMEM95	.	.	.	.	.	.	52	4	48	0	C|0.757;T|0.243	90
TMOD1	7111	bcgsc.ca	37	9	100286587	100286587	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMOD1	NM_001166116	exon2	c.T117C	p.P39P	.	.	159	7	163	0	.	90
TMPO	7112	bcgsc.ca	37	12	98926748	98926748	+	Missense_Mutation	SNP	T	T	G	rs35998138	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMPO	NM_003276	exon4	c.T713G	p.L238R	.	.	162	8	159	2	T|0.979;G|0.021	93
TMPO	7112	bcgsc.ca	37	12	98926912	98926912	+	Missense_Mutation	SNP	T	T	G	rs35645287	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMPO	NM_003276	exon4	c.T877G	p.S293A	.	.	161	7	153	1	T|0.980;G|0.020	93
TMPRSS4	56649	bcgsc.ca	37	11	117984028	117984028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TMPRSS4	NM_019894	exon9	c.A788G	p.D263G	.	.	112	5	121	0	.	90
TNIK	23043	bcgsc.ca	37	3	170811667	170811667	+	Silent	SNP	G	G	A	rs16855789	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNIK	NM_015028	exon23	c.C2682T	p.S894S	.	.	172	12	149	1	G|0.908;A|0.092	550
TNN	63923	bcgsc.ca	37	1	175092707	175092707	+	Missense_Mutation	SNP	C	C	T	rs10798333	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNN	NM_022093	exon12	c.C2822T	p.T941M	.	.	268	7	154	2	C|0.628;T|0.372	138
TNN	63923	bcgsc.ca	37	1	175097864	175097864	+	Silent	SNP	G	G	A	rs12022593	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNN	NM_022093	exon15	c.G3312A	p.T1104T	.	.	159	7	70	0	G|0.813;A|0.187	138
TNNC2	7125	bcgsc.ca	37	20	44452000	44452000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNNC2	NM_003279	exon6	c.A470G	p.E157G	.	.	127	6	60	2	.	91
TNR	7143	bcgsc.ca	37	1	175324711	175324711	+	Silent	SNP	G	G	A	rs61731115	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNR	NM_003285	exon17	c.C3177T	p.I1059I	.	.	308	11	157	1	G|0.894;A|0.106	324
TNRC6A	27327	ucsc.edu;bcgsc.ca	37	16	24801737	24801737	+	Missense_Mutation	SNP	G	G	A	rs6497759	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNRC6A	NM_014494	exon6	c.G1774A	p.A592T	.	.	107	10	123	1	G|0.839;A|0.161	92
TNS3	64759	bcgsc.ca	37	7	47336765	47336765	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TNS3	NM_022748	exon24	c.A3591G	p.R1197R	.	.	57	4	55	1	.	94
TOMM40	10452	bcgsc.ca	37	19	45396144	45396144	+	Silent	SNP	C	C	T	rs11556505	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TOMM40	NM_001128917	exon3	c.C393T	p.F131F	.	.	210	8	189	2	C|0.866;T|0.134	90
TOP3A	7156	bcgsc.ca	37	17	18188782	18188782	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TOP3A	NM_004618	exon14	c.C1650T	p.Y550Y	.	.	134	6	126	0	.	228
TPO	7173	bcgsc.ca	37	2	1497657	1497657	+	Missense_Mutation	SNP	G	G	A	rs10189135	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TPO	NM_001206744	exon11	c.G1852A	p.V618M	.	.	90	5	83	0	G|0.923;A|0.077	332
TRAK2	66008	bcgsc.ca	37	2	202252539	202252539	+	Missense_Mutation	SNP	G	G	A	rs2244438	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRAK2	NM_015049	exon13	c.C1583T	p.T528I	.	.	206	9	190	4	G|0.722;A|0.278	90
TRAK2	66008	bcgsc.ca	37	2	202264165	202264165	+	Silent	SNP	G	G	T	rs77033634	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRAK2	NM_015049	exon5	c.C415A	p.R139R	.	.	184	8	162	2	G|0.989;T|0.011	90
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110131528	110131528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRHR	NM_003301	exon2	c.C1041G	p.N347K	.	.	222	27	163	0	.	620
TRIM4	89122	bcgsc.ca	37	7	99500847	99500847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRIM4	NM_033017	exon6	c.T913C	p.F305L	.	.	61	4	88	0	.	227
TRIO	7204	bcgsc.ca	37	5	14368975	14368975	+	Silent	SNP	C	C	T	rs13189406	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRIO	NM_007118	exon17	c.C3033T	p.N1011N	.	.	130	9	171	1	C|0.797;T|0.203	562
TRMT11	60487	bcgsc.ca	37	6	126319430	126319430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRMT11	NM_001031712	exon5	c.T356C	p.L119S	.	.	78	4	106	1	.	91
TRPM6	140803	bcgsc.ca	37	9	77416928	77416928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRPM6	NM_017662	exon16	c.A1895G	p.E632G	.	.	182	7	173	1	.	335
TRRAP	8295	bcgsc.ca	37	7	98582663	98582663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRRAP	NM_001244580	exon61	c.A9397G	p.N3133D	.	.	97	4	124	0	.	923
TSPAN13	27075	ucsc.edu;bcgsc.ca	37	7	16823095	16823095	+	Silent	SNP	G	G	A	rs11491	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TSPAN13	NM_014399	exon6	c.G594A	p.A198A	.	.	92	11	129	3	T|0.109;G|0.392;C|0.145;A|0.354	515
TTC32	130502	ucsc.edu	37	2	20097628	20097628	+	Splice_Site	SNP	A	A	C	rs76015766		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTC32	NM_001008237	exon3	c.316+2T>G	.	.	.	101	16	96	17	A|0.999;C|0.001	22
TTC38	55020	bcgsc.ca	37	22	46671241	46671241	+	Silent	SNP	C	C	T	rs142148717		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTC38	NM_017931	exon5	c.C462T	p.Y154Y	.	.	193	7	192	2	C|0.997;T|0.003	91
TTC40	54777	ucsc.edu	37	10	134723479	134723479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001200049	exon20	c.A2593G	p.K865E	.	.	51	4	37	0	.	.
TTC7A	57217	bcgsc.ca	37	2	47205974	47205974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTC7A	NM_020458	exon5	c.C692T	p.P231L	.	.	146	5	142	1	.	136
TTLL9	164395	bcgsc.ca	37	20	30530766	30530766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTLL9	NM_001008409	exon15	c.A1262G	p.K421R	.	.	90	4	58	0	.	92
TTN	7273	bcgsc.ca	37	2	179398823	179398823	+	Silent	SNP	G	G	A	rs2857265	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon358	c.C102519T	p.G34173G	.	.	137	8	152	2	G|0.803;A|0.197	636
TTN	7273	bcgsc.ca	37	2	179410721	179410721	+	Missense_Mutation	SNP	G	G	A	rs142525903	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon343	c.C95242T	p.R31748C	.	.	176	7	205	2	G|0.999;A|0.001	636
TTN	7273	bcgsc.ca	37	2	179428061	179428061	+	Missense_Mutation	SNP	C	C	T	rs11896637	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon326	c.G82798A	p.A27600T	.	.	262	8	246	5	C|0.965;T|0.035	636
TTN	7273	bcgsc.ca	37	2	179528788	179528788	+	Silent	SNP	T	T	C	rs2115557	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon169	c.A36318G	p.K12106K	.	.	282	12	286	4	T|0.987;C|0.013	636
TTN	7273	bcgsc.ca	37	2	179550287	179550287	+	Missense_Mutation	SNP	G	G	C	rs72650029	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon128	c.C32350G	p.L10784V	.	.	561	14	580	8	G|0.206;C|0.794	636
TTN	7273	bcgsc.ca	37	2	179553450	179553450	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon126	c.A32151G	p.K10717K	.	.	159	5	147	0	.	636
TTN	7273	bcgsc.ca	37	2	179588199	179588199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_001267550	exon74	c.G21628A	p.V7210M	.	.	228	7	181	0	.	636
TTN	7273	bcgsc.ca	37	2	179610477	179610477	+	Silent	SNP	A	A	G	rs16866488	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTN	NM_133379	exon46	c.T16650C	p.D5550D	.	.	203	11	228	3	A|0.987;G|0.013	636
TTPA	7274	bcgsc.ca	37	8	63978483	63978483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTPA	NM_000370	exon3	c.A532G	p.K178E	.	.	188	6	204	0	.	90
TTYH2	94015	bcgsc.ca	37	17	72233559	72233559	+	Missense_Mutation	SNP	G	G	A	rs62621376	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TTYH2	NM_032646	exon4	c.G541A	p.V181I	.	.	79	5	57	0	G|0.751;A|0.249	138
TUBGCP2	10844	bcgsc.ca	37	10	135113056	135113056	+	Missense_Mutation	SNP	C	C	T	rs2298121	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TUBGCP2	NM_001256617	exon4	c.G331A	p.A111T	.	.	137	11	125	3	C|0.953;T|0.047	90
TUFT1	7286	bcgsc.ca	37	1	151551265	151551265	+	Missense_Mutation	SNP	A	A	G	rs16833395	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TUFT1	NM_020127	exon10	c.A887G	p.K296R	.	.	71	6	53	0	A|0.974;G|0.026	90
TUSC3	7991	bcgsc.ca	37	8	15517111	15517111	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TUSC3	NM_178234	exon4	c.A522G	p.A174A	.	.	61	4	85	0	.	516
TUT1	64852	bcgsc.ca	37	11	62343353	62343353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TUT1	NM_022830	exon9	c.T1952C	p.L651P	.	.	146	5	135	3	.	91
TVP23C	201158	bcgsc.ca	37	17	15449210	15449210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_145301	exon5	c.A351C	p.K117N	.	.	296	9	360	1	.	.
TWIST2	117581	bcgsc.ca	37	2	239757164	239757164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_057179	exon1	c.A308G	p.K103R	.	.	76	5	48	1	.	.
TXNL1	9352	bcgsc.ca	37	18	54285280	54285280	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TXNL1	NM_004786	exon4	c.T447C	p.C149C	.	.	144	6	182	0	.	90
TXNRD2	10587	bcgsc.ca	37	22	19867771	19867771	+	Silent	SNP	C	C	T	rs1139795	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TXNRD2	.	.	.	.	.	.	74	6	50	0	C|0.782;T|0.218	92
UBAP1	51271	bcgsc.ca	37	9	34241797	34241797	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBAP1	NM_001171201	exon3	c.T966C	p.P322P	.	.	70	4	78	0	.	90
UBE3A	7337	bcgsc.ca	37	15	25602024	25602024	+	Silent	SNP	T	T	C	rs34670662	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBE3A	NM_000462	exon9	c.A1782G	p.E594E	.	.	298	9	341	3	T|0.976;C|0.024	660
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109972536	109972536	+	Silent	SNP	C	C	T	rs61999293	bycluster;byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBE3B	NM_130466	exon28	c.C3156T	p.R1052R	.	.	94	18	58	0	C|0.998;T|0.002	660
UBL4B	164153	bcgsc.ca	37	1	110655407	110655407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBL4B	NM_203412	exon1	c.A251G	p.Q84R	.	.	79	4	54	0	.	69
UBN1	29855	bcgsc.ca	37	16	4910808	4910808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBN1	NM_001079514	exon7	c.C815T	p.P272L	.	.	88	5	88	0	.	92
UBN2	254048	bcgsc.ca	37	7	138943254	138943254	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBN2	NM_173569	exon4	c.T684C	p.A228A	.	.	71	4	82	0	.	70
UBN2	254048	bcgsc.ca	37	7	138978693	138978693	+	Silent	SNP	A	A	G	rs61748981	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBN2	NM_173569	exon17	c.A3960G	p.S1320S	.	.	81	4	87	1	A|0.993;G|0.007	70
UBQLNL	143630	bcgsc.ca	37	11	5537245	5537245	+	Missense_Mutation	SNP	G	G	T	rs3802978	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBQLNL	NM_145053	exon1	c.C427A	p.Q143K	.	.	340	10	336	6	G|0.939;T|0.061	136
UBR3	130507	bcgsc.ca	37	2	170728744	170728744	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBR3	NM_172070	exon2	c.546-2A>G	.	.	.	75	4	115	0	.	68
UBR5	51366	bcgsc.ca	37	8	103358506	103358506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBR5	NM_015902	exon7	c.G694C	p.D232H	.	.	188	8	133	0	.	761
UBR5	51366	bcgsc.ca	37	8	103358524	103358524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBR5	NM_015902	exon7	c.C676G	p.R226G	.	.	207	11	165	1	.	761
UBXN11	91544	bcgsc.ca	37	1	26610891	26610891	+	Missense_Mutation	SNP	A	A	C	rs4332350	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UBXN11	NM_183008	exon12	c.T935G	p.L312R	.	.	206	7	225	5	A|0.208;C|0.792	91
UGP2	7360	bcgsc.ca	37	2	64112744	64112744	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UGP2	NM_006759	exon6	c.A597G	p.E199E	.	.	58	4	72	0	.	90
UGT1A5	54579	bcgsc.ca	37	2	234676512	234676512	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UGT1A5	NM_019078	exon3	c.T1017C	p.T339T	.	.	72	5	62	1	.	3
ULK4	54986	bcgsc.ca	37	3	41756965	41756965	+	Missense_Mutation	SNP	C	C	T	rs61744388	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ULK4	NM_017886	exon24	c.G2551A	p.V851I	.	.	113	5	91	0	C|0.772;T|0.228	297
UMOD	7369	bcgsc.ca	37	16	20357636	20357636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UMOD	NM_003361	exon5	c.A994G	p.R332G	.	.	69	4	89	0	.	92
UNC13A	23025	bcgsc.ca	37	19	17751335	17751335	+	Silent	SNP	G	G	A	rs73922172	bycluster;byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UNC13A	NM_001080421	exon21	c.C2772T	p.A924A	.	.	132	8	73	0	G|0.979;A|0.021	25
UNC13B	10497	bcgsc.ca	37	9	35243322	35243322	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UNC13B	NM_006377	exon6	c.C429T	p.Y143Y	.	.	89	4	84	0	.	157
UNC13B	10497	bcgsc.ca	37	9	35399677	35399677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	UNC13B	NM_006377	exon35	c.T4040C	p.L1347P	.	.	78	4	84	1	.	157
USE1	55850	bcgsc.ca	37	19	17327117	17327117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_018467	exon4	c.A371G	p.E124G	.	.	65	4	48	0	.	.
USH2A	7399	bcgsc.ca	37	1	216373254	216373254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	USH2A	NM_007123	exon17	c.T3526C	p.S1176P	.	.	210	7	95	0	.	115
USP20	10868	broad.mit.edu;bcgsc.ca	37	9	132636968	132636968	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	USP20	NM_001008563	exon18	c.G1854A	p.K618K	.	.	63	6	54	0	.	658
USP24	23358	bcgsc.ca	37	1	55545266	55545266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	USP24	NM_015306	exon60	c.A7145G	p.H2382R	.	.	70	4	88	0	.	521
VAT1	10493	bcgsc.ca	37	17	41168088	41168088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VAT1	NM_006373	exon6	c.A1172G	p.K391R	.	.	334	8	247	0	.	90
VCAN	1462	bcgsc.ca	37	5	82836835	82836835	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VCAN	NM_004385	exon8	c.A8013G	p.T2671T	.	.	97	5	99	0	.	238
VCL	7414	ucsc.edu	37	10	75871735	75871735	+	Silent	SNP	C	C	G	rs2131956	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VCL	NM_014000	exon19	c.C2814G	p.G938G	.	.	74	13	51	8	C|0.351;G|0.649	93
VIPAS39	63894	bcgsc.ca	37	14	77910662	77910662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001193314	exon8	c.G527T	p.R176L	.	.	148	5	169	0	.	.
VIT	5212	bcgsc.ca	37	2	37035934	37035934	+	Missense_Mutation	SNP	A	A	G	rs2072526	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VIT	NM_053276	exon15	c.A1709G	p.K570R	.	.	129	10	92	1	G|0.137;N|0.000	92
VIT	5212	bcgsc.ca	37	2	37035945	37035945	+	Missense_Mutation	SNP	C	C	A	rs2072525	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VIT	NM_053276	exon15	c.C1720A	p.L574I	.	.	153	10	98	2	C|0.960;A|0.040	92
VNN2	8875	bcgsc.ca	37	6	133072434	133072434	+	Silent	SNP	T	T	C	rs33961621	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VNN2	NM_004665	exon5	c.A1050G	p.E350E	.	.	206	7	200	2	T|0.986;C|0.014	90
VPS13B	157680	bcgsc.ca	37	8	100821713	100821713	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VPS13B	NM_017890	exon44	c.T8127C	p.A2709A	.	.	131	5	113	0	.	301
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42492106	42492106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VPS39	NM_015289	exon2	c.C127T	p.R43W	.	.	162	29	180	0	.	229
VPS72	6944	bcgsc.ca	37	1	151149487	151149487	+	Missense_Mutation	SNP	A	A	G	rs78427992	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VPS72	NM_001271087	exon6	c.T761C	p.V254A	.	.	497	17	261	1	A|0.995;C|0.000;G|0.005	154
VPS9D1	9605	bcgsc.ca	37	16	89776229	89776229	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_004913	exon11	c.A1344G	p.E448E	.	.	66	5	60	1	.	.
VWA3B	200403	bcgsc.ca	37	2	98872605	98872605	+	Silent	SNP	T	T	A	rs77642796		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VWA3B	NM_144992	exon21	c.T2811A	p.V937V	.	.	78	4	79	0	T|0.998;A|0.002	139
VWA5B1	127731	bcgsc.ca	37	1	20662938	20662938	+	Missense_Mutation	SNP	A	A	G	rs10916769	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001039500	exon13	c.A1901G	p.K634R	.	.	109	7	94	0	A|0.767;G|0.233	.
VWA5B1	127731	bcgsc.ca	37	1	20680718	20680718	+	Missense_Mutation	SNP	G	G	A	rs2072751	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001039500	exon22	c.G3610A	p.E1204K	.	.	165	9	182	2	G|0.772;A|0.228	.
VWA7	80737	bcgsc.ca	37	6	31736835	31736835	+	Missense_Mutation	SNP	C	C	T	rs11966331	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_025258	exon10	c.G1463A	p.R488Q	.	.	99	7	55	1	C|0.968;T|0.032	.
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42303780	42303780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_015058	exon23	c.G2536C	p.V846L	.	.	227	24	297	0	.	.
VWDE	221806	bcgsc.ca	37	7	12409522	12409522	+	Missense_Mutation	SNP	A	A	G	rs3823844	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VWDE	NM_001135924	exon12	c.T2410C	p.Y804H	.	.	198	13	220	3	A|0.828;G|0.172	68
VWDE	221806	bcgsc.ca	37	7	12409535	12409535	+	Silent	SNP	A	A	G	rs3801366	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VWDE	NM_001135924	exon12	c.T2397C	p.S799S	.	.	211	17	227	4	A|0.851;G|0.149	68
VWDE	221806	broad.mit.edu;ucsc.edu	37	7	12433391	12433391	+	Silent	SNP	A	A	T	rs57885954	byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VWDE	NM_001135924	exon2	c.T72A	p.S24S	.	.	51	6	81	1	A|0.964;T|0.036	68
VWDE	221806	ucsc.edu	37	7	12410362	12410362	+	Silent	SNP	C	C	T	rs1072557	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VWDE	NM_001135924	exon11	c.G1716A	p.P572P	.	.	215	22	272	6	T|0.017;G|0.686;C|0.133;A|0.164	68
WASF1	8936	bcgsc.ca	37	6	110448742	110448742	+	Silent	SNP	G	G	A	rs55817927	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WASF1	NM_001024935	exon3	c.C63T	p.G21G	.	.	371	21	370	6	G|0.929;A|0.071	90
WDR33	55339	bcgsc.ca	37	2	128481984	128481984	+	Silent	SNP	A	A	G	rs10165881	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WDR33	NM_018383	exon11	c.T1119C	p.A373A	.	.	118	5	129	1	A|0.991;G|0.009	90
WDR34	89891	bcgsc.ca	37	9	131403215	131403215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WDR34	NM_052844	exon2	c.A190G	p.S64G	.	.	56	4	41	0	.	92
WDR90	197335	ucsc.edu	37	16	711905	711905	+	Silent	SNP	A	A	G	rs2301426	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WDR90	NM_145294	exon32	c.A3879G	p.P1293P	.	.	48	6	61	1	A|0.386;G|0.614	92
WFDC3	140686	bcgsc.ca	37	20	44417593	44417593	+	Missense_Mutation	SNP	C	C	A	rs73122754	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WFDC3	NM_080614	exon3	c.G188T	p.R63L	.	.	268	12	166	3	C|0.952;A|0.048	90
WHAMMP3	339005	bcgsc.ca	37	15	23200323	23200323	+	RNA	SNP	T	T	G	rs59830212	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	246	8	258	2	T|0.698;G|0.302	.
WNK2	65268	broad.mit.edu	37	9	96055427	96055427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WNK2	NM_006648	exon22	c.A5680G	p.K1894E	.	.	11	3	17	0	.	765
WNT8A	7478	bcgsc.ca	37	5	137424706	137424706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WNT8A	NM_058244	exon5	c.G458A	p.G153E	.	.	140	5	133	0	.	524
WRN	7486	broad.mit.edu;bcgsc.ca	37	8	30977919	30977919	+	Missense_Mutation	SNP	C	C	T	rs188554751		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	WRN	NM_000553	exon21	c.C2609T	p.P870L	.	.	110	10	191	3	C|0.999;T|0.000	1036
XKR5	389610	bcgsc.ca	37	8	6669596	6669596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XKR5	NM_207411	exon8	c.T1184C	p.V395A	.	.	16	3	21	0	.	90
XPO1	7514	bcgsc.ca	37	2	61726043	61726043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XPO1	NM_003400	exon8	c.G596T	p.C199F	.	.	150	5	136	0	.	229
XPO6	23214	bcgsc.ca	37	16	28117487	28117487	+	Silent	SNP	C	C	T	rs35178107	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XPO6	NM_015171	exon20	c.G2661A	p.R887R	.	.	43	4	47	0	C|0.980;T|0.020	227
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	217012796	217012805	+	Splice_Site	DEL	TTTCCAACAG	TTTCCAACAG	-	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TTTCCAACAG	TTTCCAACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XRCC5	.	.	.	.	.	.	289	22	306	0	.	970
YARS2	51067	bcgsc.ca	37	12	32903790	32903790	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	YARS2	NM_001040436	exon3	c.T966C	p.T322T	.	.	141	6	158	0	.	90
ZBTB38	253461	bcgsc.ca	37	3	141163655	141163655	+	Missense_Mutation	SNP	G	G	A	rs3732867	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZBTB38	NM_001080412	exon8	c.G2425A	p.A809T	.	.	102	7	147	1	G|0.980;A|0.020	25
ZBTB38	253461	bcgsc.ca	37	3	141163705	141163705	+	Silent	SNP	G	G	A	rs3732868	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZBTB38	NM_001080412	exon8	c.G2475A	p.P825P	.	.	131	8	191	1	G|0.980;A|0.020	25
ZBTB9	221504	bcgsc.ca	37	6	33423521	33423521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZBTB9	NM_152735	exon2	c.A644G	p.E215G	.	.	83	4	47	0	.	90
ZC3H3	23144	bcgsc.ca	37	8	144620485	144620485	+	Missense_Mutation	SNP	G	G	A	rs34674128	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZC3H3	NM_015117	exon2	c.C1052T	p.P351L	.	.	191	7	112	1	G|0.979;A|0.021	91
ZDHHC11	79844	bcgsc.ca	37	5	843784	843784	+	Missense_Mutation	SNP	T	T	C	rs143340865	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZDHHC11	NM_024786	exon4	c.A559G	p.I187V	.	.	300	9	261	2	T|0.997;C|0.003	92
ZDHHC22	283576	bcgsc.ca	37	14	77605774	77605774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_174976	exon2	c.T308C	p.V103A	.	.	86	4	92	1	.	.
ZEB1	6935	bcgsc.ca	37	10	31810240	31810240	+	Silent	SNP	T	T	C	rs140987489		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZEB1	NM_001174096	exon7	c.T1980C	p.N660N	.	.	125	8	155	1	T|1.000;C|0.000	518
ZEB2	9839	bcgsc.ca	37	2	145147192	145147192	+	Silent	SNP	G	G	A	rs149526010	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZEB2	NM_014795	exon10	c.C3471T	p.D1157D	.	.	259	9	222	6	G|0.995;A|0.005	297
ZFP106	64397	bcgsc.ca	37	15	42740369	42740369	+	Silent	SNP	C	C	T	rs3742996	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZFP106	NM_022473	exon3	c.G2967A	p.A989A	.	.	290	10	271	2	C|0.911;T|0.089	515
ZFP69	339559	bcgsc.ca	37	1	40961419	40961419	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_198494	exon6	c.A1269G	p.R423R	.	.	83	4	114	0	.	.
ZFR	51663	bcgsc.ca	37	5	32380214	32380214	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZFR	NM_016107	exon16	c.T2706C	p.A902A	.	.	105	6	88	0	.	90
ZHX1	11244	bcgsc.ca	37	8	124266879	124266879	+	Silent	SNP	A	A	G	rs61744421	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZHX1	NM_007222	exon3	c.T1308C	p.P436P	.	.	202	15	177	5	A|0.985;G|0.015	91
ZHX1	11244	bcgsc.ca	37	8	124267443	124267443	+	Silent	SNP	G	G	A	rs114693107	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZHX1	NM_007222	exon3	c.C744T	p.S248S	.	.	207	12	177	0	G|0.990;A|0.010	91
ZMYND11	10771	bcgsc.ca	37	10	294349	294349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZMYND11	NM_006624	exon13	c.T1301C	p.V434A	.	.	110	5	105	0	.	90
ZNF143	7702	bcgsc.ca	37	11	9537837	9537837	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF143	NM_003442	exon14	c.T1614C	p.H538H	.	.	78	4	76	0	.	90
ZNF155	7711	bcgsc.ca	37	19	44500717	44500717	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF155	NM_001260488	exon6	c.A741G	p.Q247Q	.	.	204	7	209	0	.	154
ZNF169	169841	bcgsc.ca	37	9	97062804	97062804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF169	NM_194320	exon5	c.G964A	p.E322K	.	.	73	4	67	0	.	92
ZNF180	7733	bcgsc.ca	37	19	44981671	44981671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF180	NM_013256	exon5	c.A1027G	p.N343D	.	.	146	5	116	2	.	92
ZNF223	7766	bcgsc.ca	37	19	44571112	44571112	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF223	NM_013361	exon5	c.T1131C	p.C377C	.	.	95	5	88	0	.	91
ZNF225	7768	bcgsc.ca	37	19	44635484	44635484	+	Silent	SNP	A	A	G	rs184632900		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_013362	exon5	c.A717G	p.K239K	.	.	177	12	164	2	A|0.999;G|0.000	.
ZNF257	113835	bcgsc.ca	37	19	22256347	22256347	+	Silent	SNP	G	G	A	rs10423157	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF257	NM_033468	exon3	c.G207A	p.E69E	.	.	158	11	178	1	G|0.927;A|0.073	90
ZNF257	113835	bcgsc.ca	37	19	22256358	22256358	+	Missense_Mutation	SNP	A	A	G	rs73930397	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF257	NM_033468	exon3	c.A218G	p.K73R	.	.	148	9	175	1	A|0.967;G|0.033	90
ZNF271	10778	ucsc.edu	37	18	32888401	32888401	+	RNA	SNP	A	A	G	rs74831732		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF271	.	.	.	.	.	.	105	2	91	2	A|0.250;G|0.750	90
ZNF271	10778	ucsc.edu;bcgsc.ca	37	18	32888395	32888395	+	RNA	SNP	A	A	G	rs12607752	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF271	.	.	.	.	.	.	91	7	87	3	A|0.500;G|0.500	90
ZNF280D	54816	bcgsc.ca	37	15	56924104	56924104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF280D	NM_017661	exon22	c.C2532G	p.H844Q	.	.	135	7	173	0	.	46
ZNF283	284349	bcgsc.ca	37	19	44352639	44352639	+	Missense_Mutation	SNP	G	G	A	rs1061768	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF283	NM_181845	exon7	c.G1886A	p.R629H	.	.	140	7	139	1	G|0.831;A|0.169	68
ZNF286A	57335	bcgsc.ca	37	17	15604485	15604485	+	Silent	SNP	T	T	C	rs78494624	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF286A	NM_020652	exon3	c.T57C	p.S19S	.	.	219	7	275	4	T|0.903;C|0.097	90
ZNF33B	7582	bcgsc.ca	37	10	43090038	43090038	+	Silent	SNP	A	A	G	rs74137907	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF33B	NM_006955	exon5	c.T360C	p.N120N	.	.	126	5	113	1	A|0.952;G|0.048	90
ZNF385C	201181	bcgsc.ca	37	17	40189830	40189830	+	Silent	SNP	C	C	T	rs60110245		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF385C	NM_001242704	exon2	c.G87A	p.P29P	.	.	154	6	47	0	C|0.898;T|0.102	22
ZNF425	155054	bcgsc.ca	37	7	148801337	148801337	+	Silent	SNP	T	T	C	rs12704061	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF425	NM_001001661	exon4	c.A1626G	p.T542T	.	.	62	4	54	0	T|0.773;C|0.227	136
ZNF430	80264	bcgsc.ca	37	19	21240164	21240164	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF430	NM_025189	exon5	c.T1050C	p.C350C	.	.	50	4	33	0	.	516
ZNF436	80818	bcgsc.ca	37	1	23689083	23689083	+	Silent	SNP	G	G	A	rs3795308	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF436	NM_001077195	exon4	c.C792T	p.H264H	.	.	129	7	138	0	G|0.921;A|0.079	153
ZNF438	220929	bcgsc.ca	37	10	31137470	31137470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF438	NM_001143768	exon6	c.T1864C	p.S622P	.	.	154	5	117	0	.	154
ZNF462	58499	bcgsc.ca	37	9	109687270	109687270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF462	NM_021224	exon3	c.G1077T	p.L359F	.	.	62	4	78	0	.	95
ZNF468	90333	bcgsc.ca	37	19	53344702	53344702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF468	NM_001008801	exon4	c.A845G	p.H282R	.	.	144	5	150	0	.	92
ZNF469	84627	ucsc.edu	37	16	88500822	88500822	+	Missense_Mutation	SNP	C	C	G	rs77490207		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001127464	exon2	c.C6860G	p.P2287R	.	.	35	4	24	0	C|0.988;G|0.012	.
ZNF483	158399	bcgsc.ca	37	9	114304758	114304758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF483	NM_133464	exon6	c.A1543G	p.R515G	.	.	97	6	110	0	.	91
ZNF510	22869	bcgsc.ca	37	9	99522706	99522706	+	Missense_Mutation	SNP	G	G	A	rs61739197	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF510	NM_014930	exon6	c.C406T	p.H136Y	.	.	350	12	381	3	G|0.961;A|0.039	90
ZNF521	25925	bcgsc.ca	37	18	22804782	22804782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF521	NM_015461	exon4	c.G3100A	p.E1034K	.	.	69	4	48	0	.	275
ZNF541	84215	bcgsc.ca	37	19	48024909	48024909	+	Silent	SNP	G	G	A	rs116454233	byfrequency;by1000genomes	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF541	.	.	.	.	.	.	223	10	158	2	G|0.992;A|0.008	23
ZNF544	27300	bcgsc.ca	37	19	58772244	58772244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF544	NM_014480	exon7	c.G272T	p.R91M	.	.	53	4	57	0	.	91
ZNF572	137209	bcgsc.ca	37	8	125989649	125989649	+	Missense_Mutation	SNP	G	G	A	rs10105106	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF572	NM_152412	exon3	c.G1139A	p.G380E	.	.	113	6	96	1	G|0.920;A|0.080	154
ZNF572	137209	bcgsc.ca	37	8	125989852	125989852	+	Missense_Mutation	SNP	A	A	T	rs10107774	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF572	NM_152412	exon3	c.A1342T	p.S448C	.	.	120	5	112	1	A|0.923;T|0.077	154
ZNF599	148103	bcgsc.ca	37	19	35249975	35249975	+	Silent	SNP	C	C	T	rs61730325	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF599	NM_001007248	exon4	c.G1731A	p.S577S	.	.	474	14	451	5	C|0.988;T|0.012	92
ZNF608	57507	bcgsc.ca	37	5	123983562	123983562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF608	NM_020747	exon4	c.C2515G	p.L839V	.	.	365	11	408	0	.	229
ZNF611	81856	bcgsc.ca	37	19	53209636	53209636	+	Silent	SNP	T	T	C	rs7507734	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF611	NM_030972	exon7	c.A672G	p.V224V	.	.	257	9	245	1	T|0.995;C|0.005	91
ZNF618	114991	bcgsc.ca	37	9	116811385	116811385	+	Silent	SNP	C	C	T	rs62640056	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF618	NM_133374	exon14	c.C1524T	p.N508N	.	.	189	8	162	1	C|0.988;T|0.012	22
ZNF621	285268	ucsc.edu	37	3	40573744	40573744	+	Silent	SNP	A	A	G	rs35633370	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF621	NM_001098414	exon5	c.A483G	p.R161R	.	.	68	8	54	1	A|0.930;G|0.070	91
ZNF624	57547	bcgsc.ca	37	17	16526577	16526577	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF624	NM_020787	exon6	c.A1623G	p.S541S	.	.	110	5	125	0	.	154
ZNF646	9726	ucsc.edu;bcgsc.ca	37	16	31091209	31091209	+	Silent	SNP	T	T	C	rs3751855	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF646	NM_014699	exon2	c.T3564C	p.T1188T	.	.	71	7	82	0	A|0.000;C|0.415;T|0.584	153
ZNF665	79788	bcgsc.ca	37	19	53667799	53667799	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF665	NM_024733	exon4	c.T1944C	p.H648H	.	.	105	6	103	0	.	70
ZNF676	163223	bcgsc.ca	37	19	22364322	22364322	+	Missense_Mutation	SNP	A	A	G	rs62000438	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF676	NM_001001411	exon3	c.T197C	p.M66T	.	.	231	11	215	3	A|0.974;G|0.026	90
ZNF705G	100131980	bcgsc.ca	37	8	7215694	7215694	+	Missense_Mutation	SNP	A	A	G	rs9693671	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001164457	exon5	c.T707C	p.V236A	.	.	115	6	220	4	A|0.500;G|0.500	.
ZNF750	79755	ucsc.edu;bcgsc.ca	37	17	80789156	80789156	+	Missense_Mutation	SNP	T	T	C	rs34687659	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF750	NM_024702	exon2	c.A1175G	p.Q392R	.	.	54	5	36	0	T|0.950;C|0.050	90
ZNF766	90321	bcgsc.ca	37	19	52793628	52793628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001010851	exon4	c.T584C	p.V195A	.	.	46	4	44	0	.	.
ZNF7	7553	bcgsc.ca	37	8	146067380	146067380	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF7	NM_003416	exon5	c.T888C	p.H296H	.	.	92	4	82	0	.	94
ZNF777	27153	ucsc.edu;bcgsc.ca	37	7	149152828	149152828	+	Missense_Mutation	SNP	G	G	C	rs76797088	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF777	NM_015694	exon2	c.C286G	p.P96A	.	.	55	8	50	1	G|0.987;C|0.013	136
ZNF789	285989	bcgsc.ca	37	7	99081730	99081730	+	Missense_Mutation	SNP	A	A	G	rs6962772	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF789	NM_213603	exon4	c.A229G	p.T77A	.	.	93	6	82	0	A|0.606;G|0.394	68
ZNF792	126375	bcgsc.ca	37	19	35449760	35449760	+	Silent	SNP	G	G	C	rs2651080	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_175872	exon4	c.C999G	p.T333T	.	.	141	5	120	1	G|0.562;C|0.438	.
ZNF805	390980	bcgsc.ca	37	19	57760018	57760018	+	Missense_Mutation	SNP	G	G	A	rs2014572	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_001023563	exon3	c.G203A	p.G68E	.	.	135	6	115	1	G|0.625;A|0.375	.
ZNF813	126017	bcgsc.ca	37	19	53994083	53994083	+	Silent	SNP	T	T	C	rs150664026		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF813	NM_001004301	exon4	c.T597C	p.S199S	.	.	357	11	304	4	T|0.999;C|0.001	67
ZNF816	125893	bcgsc.ca	37	19	53454543	53454543	+	Missense_Mutation	SNP	G	G	A	rs11084210	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF816	NM_001202457	exon4	c.C485T	p.S162L	.	.	326	8	292	4	A|0.112;C|0.000;G|0.888	68
ZNF846	162993	bcgsc.ca	37	19	9868960	9868960	+	Missense_Mutation	SNP	G	G	T	rs182871540		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF846	NM_001077624	exon6	c.C793A	p.Q265K	.	.	205	9	182	2	G|0.999;T|0.001	23
ZNF862	643641	bcgsc.ca	37	7	149558409	149558409	+	Silent	SNP	G	G	C	rs2240361	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF862	NM_001099220	exon7	c.G2160C	p.L720L	.	.	66	7	71	1	G|0.536;C|0.464	69
ZNF8	7554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58806191	58806191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZNF8	NM_021089	exon4	c.G1017T	p.K339N	.	.	100	11	82	1	.	91
ZP2	7783	bcgsc.ca	37	16	21215413	21215413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZP2	NM_003460	exon9	c.A910G	p.I304V	.	.	98	4	131	0	.	91
ZSCAN16	80345	bcgsc.ca	37	6	28093596	28093596	+	Silent	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZSCAN16	NM_025231	exon2	c.A375G	p.E125E	.	.	133	5	81	0	.	153
ZSCAN25	221785	bcgsc.ca	37	7	99217424	99217424	+	Silent	SNP	G	G	A	rs10282706	byfrequency	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_145115	exon4	c.G195A	p.E65E	.	.	75	6	64	0	G|0.734;A|0.266	.
ZSCAN29	146050	bcgsc.ca	37	15	43653519	43653519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZSCAN29	NM_152455	exon5	c.T2311C	p.F771L	.	.	196	6	168	1	.	91
ZYX	7791	bcgsc.ca	37	7	143085715	143085715	+	Silent	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ZYX	NM_003461	exon7	c.T1278C	p.S426S	.	.	127	5	102	1	.	90
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77607249	77607250	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	p.DP462ES	.	.	.	.	.	.	.	
RP13-147D17.1	0	bcgsc.ca	37	X	124460773	124460774	+	RNA	DNP	CA	CA	GG	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	.	.	.	.	.	.	.	.	.	.	.	
