Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9027104	9027104	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	A2ML1	NM_144670	exon34	c.C4305T	p.V1435V	.	.	97	26	92	0	.	93
AARS2	57505	bcgsc.ca	37	6	44268333	44268333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	AARS2	NM_020745	exon22	c.T2909C	p.L970P	.	.	119	10	130	2	.	91
AASS	10157	broad.mit.edu	37	7	121733100	121733100	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	AASS	NM_005763	exon17	c.1766+2T>C	.	.	.	647	8	508	2	.	92
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146029198	146029198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ABCE1	NM_002940	exon4	c.A221G	p.N74S	.	.	152	26	86	0	.	91
ABI3BP	25890	bcgsc.ca	37	3	100471770	100471770	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ABI3BP	NM_015429	exon33	c.T2850C	p.T950T	.	.	130	5	104	0	.	138
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32418350	32418350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ACO1	NM_002197	exon6	c.A499G	p.M167V	.	.	379	62	365	0	.	226
ACP6	51205	bcgsc.ca	37	1	147120198	147120198	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ACP6	NM_016361	exon9	c.T993C	p.Y331Y	.	.	140	5	101	0	.	94
ACSL5	51703	broad.mit.edu	37	10	114164495	114164495	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ACSL5	NM_016234	exon5	c.T531C	p.C177C	.	.	393	8	264	0	.	154
ADAM10	102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58902701	58902701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAM10	NM_001110	exon14	c.G1820T	p.C607F	.	.	115	23	96	0	.	227
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72468471	72468471	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAMTS14	NM_139155	exon4	c.C807G	p.D269E	.	.	123	31	130	0	.	232
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64599095	64599095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADAMTS9	NM_182920	exon22	c.G3280C	p.E1094Q	.	.	162	34	153	0	.	230
ADCK3	56997	bcgsc.ca	37	1	227172627	227172627	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADCK3	NM_020247	exon13	c.C1557A	p.T519T	.	.	143	7	125	0	.	361
ADCYAP1R1	117	broad.mit.edu	37	7	31146160	31146160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ADCYAP1R1	NM_001199635	exon17	c.C1353A	p.Y451X	.	.	122	9	113	3	.	91
AGAP1	116987	broad.mit.edu	37	2	237032584	237032584	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	AGAP1	NM_001037131	exon18	c.C2392T	p.R798X	.	.	116	5	130	0	.	93
ALKBH2	121642	bcgsc.ca	37	12	109530539	109530539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ALKBH2	NM_001205180	exon2	c.A53G	p.E18G	.	.	237	7	237	2	.	227
ALPK1	80216	broad.mit.edu;bcgsc.ca	37	4	113352530	113352530	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ALPK1	NM_001102406	exon11	c.A1827G	p.K609K	.	.	163	7	165	1	.	337
ALPK2	115701	broad.mit.edu	37	18	56191178	56191178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ALPK2	NM_052947	exon7	c.T5618C	p.L1873P	.	.	345	11	325	1	.	765
AMER2	219287	broad.mit.edu;mdanderson.org	37	13	25743761	25743761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_152704	exon1	c.A1997G	p.D666G	.	.	65	14	103	1	.	.
ANGEL2	90806	broad.mit.edu	37	1	213168527	213168527	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ANGEL2	NM_144567	exon9	c.A1491G	p.E497E	.	.	351	6	251	0	.	68
ANKRD18A	253650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	38596174	38596174	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ANKRD18A	NM_147195	exon9	c.C1163A	p.S388X	.	.	1008	189	698	1	.	92
APCDD1L	164284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57035986	57035986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	APCDD1L	NM_153360	exon4	c.C1366A	p.H456N	.	.	74	18	84	1	.	227
ARF1	375	bcgsc.ca	37	1	228285337	228285337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARF1	NM_001024228	exon4	c.A305G	p.E102G	.	.	90	4	76	0	.	227
ARFGAP2	84364	bcgsc.ca	37	11	47188398	47188398	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARFGAP2	NM_032389	exon13	c.C1245A	p.G415G	.	.	112	9	96	2	.	69
ARHGEF33	100271715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39158314	39158314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARHGEF33	NM_001145451	exon5	c.C427T	p.R143C	.	.	232	38	173	0	.	46
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27099008	27099008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ARID1A	NM_006015	exon13	c.C3424T	p.Q1142X	.	.	248	45	207	0	.	584
ASUN	55726	bcgsc.ca	37	12	27059317	27059317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_018164	exon16	c.A1999G	p.R667G	.	.	157	6	136	0	.	.
ATP12A	479	bcgsc.ca	37	13	25264547	25264547	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP12A	NM_001185085	exon6	c.G618T	p.V206V	.	.	134	6	122	0	.	137
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu	37	1	160104352	160104352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1A2	NM_000702	exon14	c.G1906T	p.E636X	.	.	223	11	196	0	.	518
ATP1A3	478	bcgsc.ca	37	19	42492274	42492274	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1A3	NM_001256214	exon4	c.A210G	p.K70K	.	.	105	5	111	0	.	92
ATP1B4	23439	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119505028	119505028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATP1B4	NM_001142447	exon4	c.G525T	p.W175C	.	.	146	55	96	1	.	131
ATXN2	6311	bcgsc.ca	37	12	111990718	111990718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ATXN2	NM_002973	exon4	c.A892G	p.S298G	.	.	120	6	54	0	.	136
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60688381	60688381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	BCL11A	NM_018014	exon4	c.C1666A	p.Q556K	.	.	58	9	73	0	.	1149
BCOR	54880	bcgsc.ca	37	X	39932497	39932497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	BCOR	NM_001123385	exon4	c.G2102A	p.G701E	.	.	69	5	64	0	.	229
C10orf35	219738	bcgsc.ca	37	10	71391577	71391577	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C10orf35	NM_145306	exon3	c.A78G	p.R26R	.	.	111	7	120	0	.	92
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50533357	50533357	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C10orf71	NM_001135196	exon3	c.C2767A	p.R923R	.	.	90	22	75	0	.	90
C11orf48	79081	bcgsc.ca	37	11	62435080	62435080	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C11orf48	NM_024099	exon4	c.T453C	p.C151C	.	.	264	8	186	0	.	90
C1orf213	148898	ucsc.edu;mdanderson.org	37	1	23697598	23697598	+	RNA	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C1orf213	.	.	.	.	.	.	588	98	526	1	.	68
C1orf68	100129271	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152692577	152692577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C1orf68	NM_001024679	exon1	c.A580T	p.N194Y	.	.	330	47	263	1	.	69
C20orf118	140711	bcgsc.ca	37	20	35509146	35509146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C20orf118	NM_080628	exon4	c.A431G	p.Q144R	.	.	97	5	86	0	.	90
C20orf173	140873	ucsc.edu;bcgsc.ca	37	20	34117117	34117117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001145350	exon2	c.A86G	p.E29G	.	.	38	4	55	0	.	.
C5orf42	65250	broad.mit.edu	37	5	37125389	37125389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	C5orf42	NM_023073	exon46	c.A8753G	p.K2918R	.	.	1024	11	725	0	.	94
CACNA1B	774	bcgsc.ca	37	9	140953165	140953165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CACNA1B	NM_001243812	exon29	c.A4453G	p.T1485A	.	.	168	7	152	1	.	138
CADM1	23705	broad.mit.edu	37	11	115111004	115111004	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CADM1	NM_014333	exon2	c.G261A	p.R87R	.	.	154	4	123	0	.	92
CALCOCO2	10241	broad.mit.edu	37	17	46940303	46940303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CALCOCO2	NM_001261390	exon14	c.A1349G	p.D450G	.	.	414	10	362	1	.	91
CAMTA2	23125	bcgsc.ca	37	17	4885113	4885113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CAMTA2	NM_001171167	exon7	c.T494C	p.V165A	.	.	84	4	79	0	.	91
CAPN9	10753	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230914798	230914798	+	Missense_Mutation	SNP	G	G	A	rs145648359		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CAPN9	NM_006615	exon9	c.G1033A	p.A345T	.	.	116	23	85	1	G|1.000;A|0.000	91
CBR3	874	bcgsc.ca	37	21	37518663	37518663	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CBR3	NM_001236	exon3	c.A687G	p.G229G	.	.	107	5	112	0	.	90
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42787466	42787466	+	Silent	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC13	NM_144719	exon7	c.G774T	p.S258S	.	.	107	14	77	0	.	91
CCDC66	285331	hgsc.bcm.edu	37	3	56650054	56650054	+	Missense_Mutation	SNP	T	T	C	rs111934125		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC66	NM_001141947	exon13	c.T1816C	p.S606P	.	.	297	19	242	0	C|1.000;|0.000	135
CCDC88C	440193	bcgsc.ca	37	14	91744398	91744398	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC88C	NM_001080414	exon29	c.A4926G	p.P1642P	.	.	85	5	98	1	.	25
CCDC93	54520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118716046	118716046	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCDC93	NM_019044	exon12	c.A900C	p.L300L	.	.	365	73	282	0	.	154
CCNJL	79616	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159686722	159686722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CCNJL	NM_024565	exon5	c.A481G	p.R161G	.	.	526	103	440	5	.	90
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35823581	35823581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CD22	NM_001185100	exon3	c.T166C	p.F56L	.	.	230	44	165	0	.	526
CDH3	1001	bcgsc.ca	37	16	68719219	68719219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CDH3	NM_001793	exon11	c.C1536A	p.N512K	.	.	100	5	104	0	.	950
CEP170B	283638	bcgsc.ca	37	14	105350816	105350816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001112726	exon9	c.C1700T	p.A567V	.	.	80	4	109	0	.	.
CEP95	90799	bcgsc.ca	37	17	62522272	62522272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CEP95	NM_138363	exon10	c.A1106G	p.H369R	.	.	229	6	130	0	.	23
CERS3	204219	bcgsc.ca	37	15	101031050	101031050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_178842	exon5	c.T260C	p.F87S	.	.	274	7	184	1	.	.
CIC	23152	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42797899	42797899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIC	NM_015125	exon16	c.C3951A	p.D1317E	.	.	29	6	39	0	.	591
CIC	23152	broad.mit.edu;ucsc.edu	37	19	42797912	42797912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIC	NM_015125	exon16	c.A3964C	p.K1322Q	.	.	24	4	49	0	.	591
CIT	11113	bcgsc.ca	37	12	120220419	120220419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CIT	NM_001206999	exon13	c.A1568G	p.Q523R	.	.	245	8	190	0	.	399
CLK4	57396	broad.mit.edu	37	5	178044423	178044423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CLK4	NM_020666	exon4	c.A397G	p.R133G	.	.	433	8	291	1	.	359
CNNM2	54805	ucsc.edu;bcgsc.ca	37	10	104679476	104679476	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CNNM2	NM_199076	exon1	c.A1239G	p.K413K	.	.	52	5	51	0	.	515
CNST	163882	bcgsc.ca	37	1	246810839	246810839	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CNST	NM_152609	exon9	c.T1336C	p.L446L	.	.	184	6	84	0	.	90
CNTNAP4	85445	bcgsc.ca	37	16	76461484	76461484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CNTNAP4	NM_138994	exon4	c.G451C	p.G151R	.	.	294	12	259	0	.	70
COG2	22796	bcgsc.ca	37	1	230819379	230819379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	COG2	NM_007357	exon11	c.C1226T	p.P409L	.	.	209	7	127	0	.	90
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	75853093	75853093	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	COL12A1	NM_004370	exon26	c.A4702T	p.R1568X	.	.	214	32	128	0	.	142
COL21A1	81578	bcgsc.ca	37	6	55924042	55924042	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	COL21A1	NM_030820	exon30	c.2609-2A>G	.	.	.	84	4	70	0	.	24
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	211456588	211456589	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CPS1	NM_001122633	exon11	c.999_1000insA	p.N333fs	.	.	261	50	179	0	.	162
CRB2	286204	bcgsc.ca	37	9	126129508	126129508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CRB2	NM_173689	exon5	c.A812G	p.Q271R	.	.	81	5	100	1	.	91
CRELD1	78987	bcgsc.ca	37	3	9985147	9985147	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CRELD1	NM_001077415	exon10	c.T996C	p.C332C	.	.	157	6	145	0	.	91
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34003090	34003090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSMD2	NM_052896	exon60	c.C9319A	p.R3107S	.	.	105	24	91	1	.	103
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34003089	34003089	+	Missense_Mutation	SNP	C	C	T	rs149230645		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSMD2	NM_052896	exon60	c.G9320A	p.R3107H	.	.	106	25	90	0	C|1.000;T|0.000	103
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75983035	75983035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CSPG4	NM_001897	exon3	c.C371T	p.S124L	.	.	260	58	225	0	.	229
CSRNP3	80034	broad.mit.edu	37	2	166451656	166451656	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	CSRNP3,hand,malignant_melanoma,+2	CSRNP3	NM_001172173	exon4	c.A81G	p.E27E	.	.	379	8	298	0	.	157
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274899	41274899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CTNNB1	NM_001098209	exon8	c.G1149C	p.W383C	.	.	260	56	194	0	.	24361
CTNND2	1501	mdanderson.org	37	5	11385059	11385059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CTNND2	NM_001332	exon7	c.T895A	p.S299T	.	.	35	6	34	0	.	293
CUL2	8453	bcgsc.ca	37	10	35321396	35321396	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CUL2	NM_001198778	exon12	c.A1194G	p.R398R	.	.	115	5	77	0	.	229
CUX1	1523	bcgsc.ca	37	7	101801865	101801865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CUX1	NM_181500	exon9	c.A733G	p.T245A	.	.	112	6	88	0	.	160
CYP27C1	339761	bcgsc.ca	37	2	127958895	127958895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	CYP27C1	NM_001001665	exon3	c.T191C	p.I64T	.	.	70	4	66	0	.	90
DCST2	127579	bcgsc.ca	37	1	155005225	155005225	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DCST2	NM_144622	exon3	c.A459G	p.K153K	.	.	167	5	140	0	.	92
DDHD1	80821	broad.mit.edu;bcgsc.ca	37	14	53522391	53522391	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DDHD1	NM_001160147	exon11	c.A2253G	p.K751K	.	.	137	6	102	0	.	92
DDX60	55601	bcgsc.ca	37	4	169169399	169169399	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DDX60	NM_017631	exon29	c.T3903C	p.P1301P	.	.	130	5	119	0	.	25
DEF6	50619	bcgsc.ca	37	6	35280122	35280122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DEF6	NM_022047	exon4	c.A467G	p.E156G	.	.	75	4	87	0	.	227
DENND4C	55667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19325935	19325935	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DENND4C	NM_017925	exon14	c.1954-2A>G	.	.	.	410	74	289	1	.	92
DERL1	79139	ucsc.edu;bcgsc.ca	37	8	124054284	124054284	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DERL1	NM_001134671	exon1	c.T79C	p.L27L	.	.	47	6	36	0	.	226
DHX32	55760	bcgsc.ca	37	10	127526949	127526949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DHX32	NM_018180	exon10	c.G1889T	p.R630L	.	.	86	4	57	0	.	290
DLL4	54567	bcgsc.ca	37	15	41228529	41228529	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DLL4	NM_019074	exon9	c.T1344C	p.P448P	.	.	78	4	78	0	.	636
DLX6	1750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96639126	96639126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DLX6	NM_005222	exon3	c.A649T	p.N217Y	.	.	246	33	190	0	.	92
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57438657	57438657	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH12	NM_178504	exon25	c.T3630C	p.N1210N	.	.	134	30	112	0	.	47
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57443514	57443514	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH12	NM_178504	exon22	c.G3201A	p.K1067K	.	.	175	42	127	0	.	47
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21031159	21031159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNAH3	NM_017539	exon41	c.G5809A	p.E1937K	.	.	434	93	481	0	.	167
DNM1	1759	bcgsc.ca	37	9	131004614	131004614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DNM1	.	.	.	.	.	.	169	5	147	0	.	228
DOLK	22845	bcgsc.ca	37	9	131709312	131709312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DOLK	NM_014908	exon1	c.C271T	p.L91F	.	.	54	4	51	0	.	90
DYRK4	8798	bcgsc.ca	37	12	4708280	4708280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	DYRK4	NM_003845	exon7	c.A647G	p.K216R	.	.	349	8	257	0	.	360
EEF1A1	1915	bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EEF1A1	NM_001402	exon7	c.T1077G	p.P359P	.	.	284	9	207	5	C|1.000;|0.000	226
EHHADH	1962	bcgsc.ca	37	3	184922268	184922268	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EHHADH	NM_001966	exon6	c.A846G	p.S282S	.	.	136	5	108	0	.	93
EI24	9538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125448940	125448940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EI24	NM_001007277	exon7	c.G537T	p.L179F	.	.	179	15	152	0	.	91
EIF5B	9669	broad.mit.edu	37	2	99978132	99978132	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EIF5B	NM_015904	exon4	c.A768G	p.K256K	.	.	384	7	288	0	.	93
ELMOD1	55531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	107518278	107518278	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_018712	exon7	c.505delC	p.P169fs	.	.	173	41	154	0	.	.
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43532588	43532588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPG5	NM_020964	exon3	c.A1030G	p.K344E	.	.	430	71	341	0	.	580
EPHX2	2053	ucsc.edu;bcgsc.ca	37	8	27361175	27361175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPHX2	NM_001979	exon3	c.T241C	p.C81R	.	.	43	5	47	0	.	91
EPM2A	7957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146007291	146007291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EPM2A	NM_005670	exon2	c.A443C	p.N148T	.	.	227	36	196	1	.	415
EQTN	54586	broad.mit.edu	37	9	27296685	27296685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001161585	exon2	c.A128G	p.K43R	.	.	979	9	771	2	.	.
ERGIC1	57222	broad.mit.edu	37	5	172324034	172324034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ERGIC1	NM_001031711	exon3	c.T112C	p.F38L	.	.	974	15	857	2	.	93
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578157	5578157	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EVC2	NM_147127	exon18	c.C3082T	p.L1028L	.	.	54	20	47	0	.	155
EVX2	344191	broad.mit.edu;bcgsc.ca	37	2	176948182	176948182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EVX2	NM_001080458	exon1	c.C323A	p.A108E	.	.	57	10	61	1	.	70
EXD3	54932	bcgsc.ca	37	9	140201539	140201539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EXD3	NM_017820	exon22	c.T2494C	p.C832R	.	.	112	6	126	0	.	90
EXT2	2132	bcgsc.ca	37	11	44193215	44193215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	EXT2	NM_000401	exon8	c.A1327G	p.T443A	.	.	137	8	137	0	.	524
FAH	2184	bcgsc.ca	37	15	80465360	80465360	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAH	NM_000137	exon9	c.A711G	p.R237R	.	.	170	6	183	1	.	90
FAM134C	162427	ucsc.edu;bcgsc.ca	37	17	40737144	40737144	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM134C	NM_178126	exon6	c.A726G	p.Q242Q	.	.	49	4	47	0	.	70
FAM178A	55719	broad.mit.edu	37	10	102689177	102689177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001136123	exon7	c.G2146A	p.G716S	.	.	564	7	441	0	.	.
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177250229	177250229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM5B	NM_021165	exon8	c.T1917A	p.F639L	.	.	259	41	177	0	.	28
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144812668	144812668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FAM83H	NM_198488	exon2	c.C85T	p.R29C	.	.	29	11	30	0	.	92
FBXL19	54620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30939817	30939817	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FBXL19	NM_001099784	exon6	c.G717A	p.K239K	.	.	121	18	116	1	.	661
FBXW4	6468	bcgsc.ca	37	10	103436156	103436156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FBXW4	NM_022039	exon2	c.T298C	p.S100P	.	.	105	5	85	1	.	226
FGL2	10875	broad.mit.edu	37	7	76829044	76829044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FGL2	NM_006682	exon1	c.G67A	p.A23T	.	.	90	4	96	0	.	92
FUT7	2529	bcgsc.ca	37	9	139925992	139925992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	FUT7	NM_004479	exon2	c.A199G	p.T67A	.	.	152	5	161	0	.	90
GAD1	2571	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171685987	171685987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GAD1	NM_000817	exon4	c.T148G	p.F50V	.	.	94	20	97	0	.	91
GAPVD1	26130	bcgsc.ca	37	9	128064336	128064336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GAPVD1	NM_015635	exon3	c.A260G	p.K87R	.	.	254	7	177	0	.	93
GCSH	2653	bcgsc.ca	37	16	81121204	81121204	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GCSH	NM_004483	exon4	c.292+2T>C	.	.	.	92	4	96	1	.	90
GLDC	2731	broad.mit.edu;bcgsc.ca	37	9	6605264	6605264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GLDC	NM_000170	exon6	c.T728C	p.L243P	.	.	191	6	153	0	.	92
GLE1	2733	bcgsc.ca	37	9	131267110	131267110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GLE1	NM_001499	exon1	c.A26G	p.E9G	.	.	51	4	39	0	.	22
GNE	10020	bcgsc.ca	37	9	36222978	36222978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GNE	NM_001128227	exon9	c.C1522T	p.R508C	.	.	86	4	91	0	.	115
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	38034740	38034740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GNL2	NM_013285	exon13	c.C1580A	p.T527K	.	.	369	15	344	0	.	91
GNPTAB	79158	bcgsc.ca	37	12	102161870	102161870	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GNPTAB	NM_024312	exon11	c.T1353C	p.Y451Y	.	.	134	5	111	0	.	92
GOLGA3	2802	bcgsc.ca	37	12	133365614	133365614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GOLGA3	NM_001172557	exon13	c.A2810G	p.Q937R	.	.	115	5	112	0	.	95
GPM6A	2823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	176556173	176556173	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPM6A	NM_201591	exon7	c.C720T	p.A240A	.	.	216	41	141	0	.	90
GPN2	54707	bcgsc.ca	37	1	27216203	27216203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPN2	NM_018066	exon1	c.T385C	p.S129P	.	.	83	4	100	0	.	90
GPR12	2835	bcgsc.ca	37	13	27333051	27333051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPR12	NM_005288	exon2	c.A914G	p.N305S	.	.	135	5	173	0	.	90
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154055824	154055824	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPR149	NM_001038705	exon4	c.G1860A	p.E620E	.	.	513	49	457	0	.	96
GPR179	440435	bcgsc.ca	37	17	36482726	36482726	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GPR179	NM_001004334	exon11	c.T6726C	p.C2242C	.	.	204	6	161	0	.	93
GSN	2934	bcgsc.ca	37	9	124080957	124080957	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	GSN	NM_000177	exon9	c.T1143C	p.P381P	.	.	58	4	58	0	.	154
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	122627257	122627257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HAS2	NM_005328	exon4	c.T751A	p.W251R	.	.	174	28	94	0	.	236
HDAC5	10014	bcgsc.ca	37	17	42157536	42157536	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HDAC5	NM_001015053	exon23	c.C2886A	p.A962A	.	.	81	4	88	0	.	227
HDAC5	10014	bcgsc.ca	37	17	42157781	42157781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HDAC5	NM_001015053	exon22	c.T2816C	p.L939P	.	.	55	4	62	0	.	227
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18833076	18833076	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HDAC9	NM_178423	exon17	c.2313+1G>A	.	.	.	157	33	155	0	.	227
HEY2	23493	bcgsc.ca	37	6	126075675	126075675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HEY2	NM_012259	exon4	c.A311G	p.Q104R	.	.	250	7	169	0	.	658
HHLA1	10086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133090141	133090141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001145095	exon11	c.G1003A	p.A335T	.	.	220	23	130	0	.	.
HIVEP1	3096	broad.mit.edu	37	6	12120721	12120721	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HIVEP1	NM_002114	exon4	c.T693C	p.R231R	.	.	294	6	207	1	.	139
HK2	3099	broad.mit.edu;mdanderson.org	37	2	75107697	75107697	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HK2	NM_000189	exon10	c.1570+1G>T	.	.	.	84	13	87	0	.	252
HLA-DMB	3109	bcgsc.ca	37	6	32908574	32908574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HLA-DMB	NM_002118	exon1	c.T11C	p.F4S	.	.	76	17	55	14	.	90
HOOK3	84376	bcgsc.ca	37	8	42821743	42821743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HOOK3	NM_032410	exon10	c.A907G	p.I303V	.	.	116	5	101	0	.	154
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22222416	22222416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HSPG2	NM_005529	exon3	c.G243A	p.M81I	.	.	94	18	108	0	.	141
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154862969	154862969	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HTR5A	NM_024012	exon1	c.C360T	p.C120C	.	.	40	8	33	0	.	155
HUWE1	10075	bcgsc.ca	37	X	53658431	53658431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	HUWE1	NM_031407	exon11	c.T697C	p.S233P	.	.	203	6	131	0	.	280
IDH1	3417	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209108305	209108305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IDH1	NM_005896	exon6	c.A544G	p.M182V	.	.	202	52	168	4	.	23522
IFT57	55081	broad.mit.edu	37	3	107882538	107882538	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IFT57	NM_018010	exon10	c.A1083G	p.E361E	.	.	1640	18	1075	2	.	227
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99251033	99251033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IGF1R	NM_000875	exon2	c.T337C	p.Y113H	.	.	183	28	139	0	.	1490
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99459277	99459277	+	Missense_Mutation	SNP	A	A	G	rs144533252		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IGF1R	NM_000875	exon9	c.A1913G	p.N638S	.	.	269	35	233	1	A|1.000;G|0.000	1490
IKBKB	3551	bcgsc.ca	37	8	42177146	42177146	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IKBKB	NM_001556	exon15	c.T1560C	p.A520A	.	.	191	6	193	0	.	1164
IL17RC	84818	ucsc.edu	37	3	9970113	9970113	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IL17RC	NM_153461	exon11	c.T1215G	p.G405G	.	.	14	4	37	9	.	92
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57876515	57876515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IMPAD1	NM_017813	exon5	c.C917G	p.A306G	.	.	320	69	260	0	.	91
INADL	10207	broad.mit.edu	37	1	62366972	62366972	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	INADL	NM_176877	exon24	c.A3222G	p.E1074E	.	.	379	7	231	0	.	94
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121556404	121556404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	INPP5F	NM_014937	exon7	c.C847T	p.R283C	.	.	319	67	211	0	.	229
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123092919	123092919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IQUB	NM_178827	exon13	c.T2254A	p.F752I	.	.	359	76	300	0	.	156
IRF2BP1	26145	bcgsc.ca	37	19	46387454	46387454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IRF2BP1	NM_015649	exon1	c.T1579C	p.C527R	.	.	63	5	47	1	.	90
IRF4	3662	broad.mit.edu;mdanderson.org	37	6	393366	393366	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	IRF4	NM_001195286	exon2	c.A214T	p.K72X	.	.	33	6	37	0	.	659
ISOC2	79763	bcgsc.ca	37	19	55966712	55966712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ISOC2	NM_024710	exon4	c.T382C	p.S128P	.	.	115	5	98	1	.	91
ITIH2	3698	bcgsc.ca	37	10	7786170	7786170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ITIH2	NM_002216	exon18	c.A2335G	p.T779A	.	.	116	6	93	0	.	93
KATNB1	10300	bcgsc.ca	37	16	57789289	57789289	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KATNB1	NM_005886	exon16	c.G1449A	p.V483V	.	.	64	4	52	0	.	90
KDM3A	55818	broad.mit.edu	37	2	86677070	86677070	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KDM3A	NM_001146688	exon3	c.A327G	p.V109V	.	.	214	6	124	1	.	291
KDM5B	10765	bcgsc.ca	37	1	202719844	202719844	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KDM5B	NM_006618	exon13	c.T1764C	p.S588S	.	.	280	7	169	0	.	273
KHNYN	23351	broad.mit.edu;bcgsc.ca	37	14	24905604	24905604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KHNYN	NM_015299	exon7	c.T1696G	p.F566V	.	.	105	10	102	0	.	93
KIAA0317	9870	bcgsc.ca	37	14	75138174	75138174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA0317	NM_001039479	exon12	c.A1435G	p.T479A	.	.	163	5	98	0	.	525
KIAA0368	23392	bcgsc.ca	37	9	114156580	114156580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA0368	NM_001080398	exon27	c.A3316G	p.K1106E	.	.	250	8	212	0	.	68
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105538197	105538197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA1033	NM_015275	exon21	c.C2143A	p.P715T	.	.	422	75	367	0	.	91
KIAA1199	57214	bcgsc.ca	37	15	81224357	81224357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA1199	NM_018689	exon21	c.G2770A	p.G924S	.	.	52	4	49	0	.	93
KIAA1324	57535	bcgsc.ca	37	1	109734444	109734444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIAA1324	NM_020775	exon13	c.A1642G	p.S548G	.	.	151	6	134	0	.	157
KIF18A	81930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	28116264	28116264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF18A	NM_031217	exon3	c.A409C	p.M137L	.	.	277	46	226	0	.	92
KIF19	124602	broad.mit.edu	37	17	72350550	72350550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF19	NM_153209	exon18	c.C2558A	p.A853D	.	.	29	5	44	0	.	90
KIF20B	9585	bcgsc.ca	37	10	91498776	91498776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF20B	NM_016195	exon21	c.A3718G	p.R1240G	.	.	196	6	155	1	.	93
KIF21B	23046	ucsc.edu	37	1	200957662	200957662	+	Nonsense_Mutation	SNP	G	G	T	rs200143132	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF21B	NM_017596	exon23	c.C3309A	p.Y1103X	.	.	125	26	114	17	G|0.997;A|0.003	96
KIF6	221458	bcgsc.ca	37	6	39328204	39328204	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KIF6	NM_145027	exon18	c.A2049G	p.E683E	.	.	148	5	126	0	.	713
KLHL40	131377	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42727555	42727555	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_152393	exon1	c.G445C	p.A149P	.	.	70	14	94	3	.	.
KRT8	3856	ucsc.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	KRT8	NM_001256282	exon2	c.C151T	p.R51C	.	.	46	4	39	0	G|0.944;A|0.055	92
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134339676	134339676	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	KY,NS,carcinoma,0	KY	NM_178554	exon7	c.C507T	p.D169D	.	.	155	36	110	1	.	24
LCE1C	353133	ucsc.edu	37	1	152777757	152777757	+	Silent	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LCE1C	NM_178351	exon2	c.A198T	p.G66G	.	.	151	19	183	1	.	90
LCT	3938	ucsc.edu	37	2	136566666	136566666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LCT	NM_002299	exon8	c.A3251G	p.K1084R	.	.	43	4	42	0	.	101
LILRB4	11006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55175420	55175420	+	Silent	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LILRB4	NM_006847	exon3	c.A279T	p.A93A	.	.	549	102	557	0	.	93
LNPEP	4012	broad.mit.edu	37	5	96322256	96322256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LNPEP	NM_005575	exon4	c.T1013C	p.V338A	.	.	692	8	585	2	.	229
LOC728323	0	broad.mit.edu	37	2	243056854	243056854	+	RNA	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	640	12	462	1	.	.
LPIN2	9663	bcgsc.ca	37	18	2939575	2939575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LPIN2	NM_014646	exon6	c.A725G	p.K242R	.	.	71	4	66	0	.	227
LRBA	987	broad.mit.edu	37	4	151835439	151835439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRBA	NM_006726	exon9	c.T1069C	p.F357L	.	.	501	9	358	2	.	157
LRG1	116844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4538064	4538064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRG1	NM_052972	exon2	c.A932G	p.Y311C	.	.	101	15	91	0	.	91
LRRC1	55227	bcgsc.ca	37	6	53743836	53743836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRRC1	NM_018214	exon3	c.A323G	p.Q108R	.	.	112	5	93	0	.	91
LRRC16B	90668	bcgsc.ca	37	14	24528940	24528940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRRC16B	NM_138360	exon22	c.A1867G	p.S623G	.	.	121	5	114	0	.	139
LRRC28	123355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99796167	99796167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LRRC28	NM_144598	exon2	c.C5T	p.A2V	.	.	191	19	141	0	.	90
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33174004	33174004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LTBP1	NM_206943	exon2	c.G557C	p.C186S	.	.	189	38	144	0	.	230
LYPD5	284348	bcgsc.ca	37	19	44301832	44301832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	LYPD5	NM_001031749	exon5	c.A667G	p.T223A	.	.	153	6	135	1	.	90
MACF1	23499	bcgsc.ca	37	1	39760768	39760768	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MACF1	NM_012090	exon20	c.A2220G	p.Q740Q	.	.	89	6	67	0	.	165
MAN1A1	4121	bcgsc.ca	37	6	119569428	119569428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MAN1A1	NM_005907	exon6	c.A989G	p.K330R	.	.	171	6	157	0	.	517
MAP3K5	4217	bcgsc.ca	37	6	136932493	136932493	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MAP3K5	NM_005923	exon18	c.T2448C	p.G816G	.	.	168	6	153	0	.	982
MAP4	4134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47957722	47957722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MAP4	NM_001134364	exon7	c.A1595C	p.K532T	.	.	393	85	345	0	.	93
MAP7D3	79649	broad.mit.edu	37	X	135328302	135328302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MAP7D3	NM_024597	exon3	c.G175A	p.D59N	.	.	646	9	419	2	.	110
MB21D2	151963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	192516896	192516896	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MB21D2	NM_178496	exon2	c.T755A	p.L252H	.	.	99	19	107	0	.	70
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	149247524	149247524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MBD5	NM_018328	exon12	c.C3624A	p.N1208K	.	.	109	11	108	0	.	95
MCTP1	79772	broad.mit.edu	37	5	94207030	94207030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MCTP1	NM_024717	exon14	c.C2129A	p.P710Q	.	.	302	6	227	1	.	92
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40572166	40572166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MED14	NM_004229	exon6	c.G781A	p.D261N	.	.	357	140	268	0	.	289
METTL22	79091	broad.mit.edu	37	16	8739975	8739975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	METTL22	NM_024109	exon11	c.A1190G	p.K397R	.	.	279	9	252	1	.	90
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128119312	128119312	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	METTL2B	NM_018396	exon3	c.T303G	p.P101P	.	.	713	130	565	0	.	23
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103550822	103550822	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MGEA5	NM_012215	exon14	c.T2285A	p.L762H	.	.	289	60	234	0	.	93
MLL5	55904	bcgsc.ca	37	7	104753587	104753587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MLL5	NM_018682	exon26	c.T5384C	p.L1795P	.	.	176	8	174	1	.	93
MMP14	4323	bcgsc.ca	37	14	23311908	23311908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MMP14	NM_004995	exon4	c.A670G	p.R224G	.	.	76	4	78	0	.	226
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	60744895	60744895	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MRC2	NM_006039	exon6	c.1117+1G>T	.	.	.	32	7	34	0	.	117
MROH5	389690	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	142445230	142445230	+	RNA	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	250	38	215	2	.	.
MTHFD1L	25902	bcgsc.ca	37	6	151270189	151270189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MTHFD1L	NM_001242767	exon16	c.A1649G	p.D550G	.	.	63	4	55	1	.	292
MTMR3	8897	bcgsc.ca	37	22	30415899	30415899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MTMR3	NM_153050	exon17	c.A2251G	p.R751G	.	.	124	5	122	0	.	292
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9020787	9020787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MUC16	NM_024690	exon20	c.G37315T	p.G12439C	.	.	327	71	325	0	.	566
MUC17	140453	bcgsc.ca	37	7	100684301	100684301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MUC17	NM_001040105	exon3	c.A9604G	p.T3202A	.	.	202	6	229	0	.	95
MUC2	4583	bcgsc.ca	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MUC2	NM_002457	exon30	c.C4766A	p.T1589N	.	.	150	10	216	5	.	90
MYLK	4638	bcgsc.ca	37	3	123348421	123348421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MYLK	NM_053025	exon30	c.A5014G	p.N1672D	.	.	189	6	167	0	.	365
MYO9B	4650	bcgsc.ca	37	19	17305764	17305764	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	MYO9B	NM_001130065	exon22	c.A3528G	p.R1176R	.	.	119	5	106	0	.	67
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40696106	40696106	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NAGLU	NM_000263	exon6	c.G2082A	p.Q694Q	.	.	63	16	70	0	.	90
NBEAL1	65065	broad.mit.edu	37	2	204073996	204073996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NBEAL1	NM_001114132	exon52	c.A7649G	p.E2550G	.	.	412	9	324	1	.	92
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71068895	71068895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NCOA2	NM_006540	exon11	c.A1705G	p.M569V	.	.	164	28	153	0	.	639
NCOA4	8031	broad.mit.edu	37	10	51586303	51586303	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NCOA4	NM_001145261	exon10	c.A1779G	p.E593E	.	.	462	7	332	0	.	1042
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12442	12442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	ENST00000361567	exon1	c.G106A	p.V36I	.	.	456	374	417	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12889	12889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	ENST00000361567	exon1	c.G553A	p.A185T	.	.	345	40	433	1	.	.
NDC80	10403	broad.mit.edu	37	18	2616483	2616483	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NDC80	NM_006101	exon17	c.A1839G	p.E613E	.	.	675	8	476	1	.	91
NDC80	10403	broad.mit.edu;bcgsc.ca	37	18	2606483	2606483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NDC80	NM_006101	exon14	c.G1534A	p.D512N	.	.	264	9	186	0	.	91
NELL2	4753	bcgsc.ca	37	12	45004674	45004674	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NELL2	NM_001145107	exon15	c.T1674C	p.C558C	.	.	271	7	195	0	.	517
NFAT5	10725	bcgsc.ca	37	16	69600218	69600218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NFAT5	NM_001113178	exon1	c.T14C	p.F5S	.	.	51	4	57	0	.	90
NFKBIZ	64332	broad.mit.edu	37	3	101571816	101571816	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NFKBIZ	NM_031419	exon4	c.T547C	p.L183L	.	.	406	7	316	0	.	92
NLRP1	22861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5433881	5433881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NLRP1	NM_001033053	exon12	c.T3452C	p.V1151A	.	.	105	16	121	1	.	274
NOP14-AS1	317648	ucsc.edu	37	4	2940434	2940434	+	RNA	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	68	1	75	0	.	.
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15297927	15297927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NOTCH3	NM_000435	exon11	c.C1829A	p.S610Y	.	.	173	35	216	0	.	855
NPHP1	4867	bcgsc.ca	37	2	110881495	110881495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	NPHP1	NM_000272	exon20	c.T2075C	p.L692P	.	.	161	6	152	0	.	92
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228465514	228465514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OBSCN	NM_001271223	exon30	c.T8101C	p.F2701L	.	.	328	34	230	0	.	403
OLFML3	56944	bcgsc.ca	37	1	114522180	114522180	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OLFML3	NM_020190	exon1	c.A42G	p.S14S	.	.	136	5	131	0	.	68
OR10Z1	128368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576423	158576423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR10Z1	NM_001004478	exon1	c.C195A	p.F65L	.	.	522	86	443	1	.	70
OR1L6	392390	broad.mit.edu	37	9	125512220	125512220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR1L6	NM_001004453	exon1	c.T94C	p.F32L	.	.	556	8	431	1	.	68
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263522	248263522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR2L13	NM_175911	exon3	c.C845A	p.P282H	.	.	181	25	113	0	.	70
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20612277	20612277	+	Missense_Mutation	SNP	G	G	A	rs139546094		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR4N5	NM_001004724	exon1	c.G383A	p.R128Q	.	.	416	100	347	0	G|1.000;A|0.000	69
OR56A1	120796	bcgsc.ca	37	11	6048634	6048634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR56A1	NM_001001917	exon1	c.T301C	p.F101L	.	.	226	7	204	1	.	115
OR5T2	219464	bcgsc.ca	37	11	56000627	56000627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR5T2	NM_001004746	exon1	c.T35C	p.I12T	.	.	144	7	144	0	.	70
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517119	158517119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OR6Y1	NM_001005189	exon1	c.G777T	p.M259I	.	.	184	32	146	0	.	69
ORAOV1	220064	bcgsc.ca	37	11	69486543	69486543	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ORAOV1	NM_153451	exon3	c.G201A	p.L67L	.	.	127	5	92	0	.	204
OXCT1	5019	bcgsc.ca	37	5	41842778	41842778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	OXCT1	NM_000436	exon6	c.A670G	p.R224G	.	.	152	5	121	0	.	133
PAN3	255967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28794510	28794510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PAN3	NM_175854	exon6	c.C995T	p.A332V	.	.	127	27	86	0	.	69
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237567	140237567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHA10	NM_031859	exon1	c.G1934T	p.R645L	.	.	121	26	211	0	.	99
PCDHGA11	56105	bcgsc.ca	37	5	140801213	140801213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_032091	exon1	c.A419G	p.E140G	.	.	68	4	68	0	.	.
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140755534	140755534	+	Silent	SNP	G	G	A	rs200712802	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHGA6	NM_018919	exon1	c.G1884A	p.T628T	.	.	108	19	129	0	G|0.996;A|0.004	67
PCDHGB7	56099	bcgsc.ca	37	5	140797986	140797986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCDHGB7	NM_018927	exon1	c.A560G	p.D187G	.	.	175	7	144	0	.	29
PCLO	27445	bcgsc.ca	37	7	82544701	82544701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PCLO	NM_014510	exon7	c.T12601C	p.S4201P	.	.	244	7	179	0	.	29
PDE1B	5153	bcgsc.ca	37	12	54960765	54960765	+	Missense_Mutation	SNP	T	T	C	rs61733023		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PDE1B	NM_000924	exon3	c.T121C	p.Y41H	.	.	144	6	98	1	T|0.987;C|0.013	92
PHACTR1	221692	broad.mit.edu	37	6	12749963	12749963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_030948	exon4	c.G191T	p.R64L	.	.	49	7	49	0	.	.
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169820663	169820663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PHC3	NM_024947	exon13	c.A2528T	p.N843I	.	.	297	44	248	0	.	227
PHF16	9767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46844301	46844301	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PHF16	NM_001077445	exon2	c.A6G	p.K2K	.	.	215	67	209	0	.	130
PIH1D3	139212	broad.mit.edu	37	X	106462169	106462169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_173494	exon4	c.A302G	p.D101G	.	.	412	7	279	0	.	.
PIK3C2B	5287	bcgsc.ca	37	1	204409447	204409447	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PIK3C2B	NM_002646	exon23	c.T3252C	p.C1084C	.	.	86	4	89	0	.	1310
PIK3C2G	5288	broad.mit.edu	37	12	18650576	18650576	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PIK3C2G	NM_004570	exon21	c.T2787C	p.D929D	.	.	506	8	330	0	.	1312
PIK3CB	5291	bcgsc.ca	37	3	138402597	138402597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PIK3CB	NM_006219	exon16	c.T2348C	p.M783T	.	.	85	4	59	0	.	1311
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110432768	110432768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PKHD1L1	NM_177531	exon23	c.C2546A	p.P849H	.	.	334	107	176	0	.	145
PLCG2	5336	bcgsc.ca	37	16	81990321	81990321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PLCG2	NM_002661	exon32	c.T3592C	p.S1198P	.	.	61	4	62	1	.	892
PLCL2	23228	bcgsc.ca	37	3	17051467	17051467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PLCL2	NM_015184	exon2	c.A251G	p.D84G	.	.	71	4	91	0	.	229
PLEKHA5	54477	broad.mit.edu;bcgsc.ca	37	12	19511277	19511277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PLEKHA5	NM_001256470	exon27	c.A3254G	p.E1085G	.	.	181	7	97	0	.	227
PLEKHF2	79666	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	96166845	96166845	+	Missense_Mutation	SNP	T	T	G	rs200210769	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PLEKHF2	NM_024613	exon2	c.T573G	p.F191L	.	.	598	102	421	2	T|0.999;C|0.001	92
POLE2	5427	bcgsc.ca	37	14	50133095	50133095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	POLE2	NM_001197331	exon7	c.A529G	p.K177E	.	.	185	6	121	0	.	229
PON1	5444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	94947702	94947702	+	Silent	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PON1	NM_000446	exon2	c.A78C	p.T26T	.	.	145	26	148	0	.	91
PPBPP2	10895	broad.mit.edu	37	4	74920006	74920006	+	RNA	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	25	3	34	0	.	.
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102494240	102494240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PPIP5K2	NM_015216	exon15	c.A1700T	p.E567V	.	.	544	108	343	0	.	92
PPP2R1A	5518	bcgsc.ca	37	19	52724235	52724235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PPP2R1A	NM_014225	exon12	c.A1367G	p.Y456C	.	.	139	5	133	0	.	1666
PRDM13	59336	bcgsc.ca	37	6	100060982	100060982	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRDM13	NM_021620	exon4	c.T471C	p.R157R	.	.	129	6	160	1	.	135
PRDM2	7799	bcgsc.ca	37	1	14107067	14107067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRDM2	NM_015866	exon8	c.A2777G	p.D926G	.	.	241	8	224	0	.	116
PRDM2	7799	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14075887	14075887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRDM2	NM_015866	exon6	c.G416T	p.W139L	.	.	64	12	54	1	.	116
PREX2	80243	bcgsc.ca	37	8	69143583	69143583	+	Silent	SNP	C	C	T	rs140051329		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PREX2	NM_024870	exon40	c.C4791T	p.C1597C	.	.	80	4	62	0	C|1.000;T|0.000	390
PRF1	5551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	72358776	72358776	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRF1	NM_001083116	exon3	c.C701A	p.S234X	.	.	77	11	98	0	.	578
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	42858905	42858905	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PRICKLE1	NM_001144882	exon7	c.G931C	p.D311H	.	.	150	40	148	0	.	518
PROM2	150696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95952937	95952937	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PROM2	NM_001165977	exon19	c.C2151T	p.A717A	.	.	100	23	85	0	.	91
PSMD14	10213	broad.mit.edu	37	2	162227832	162227832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PSMD14	NM_005805	exon7	c.A461G	p.K154R	.	.	465	8	462	0	.	433
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47846352	47846352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001013732	exon3	c.C2228A	p.T743N	.	.	251	51	252	0	.	.
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44069658	44069658	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PTPRF	NM_002840	exon16	c.C2835T	p.N945N	.	.	119	28	117	0	.	232
PTPRJ	5795	bcgsc.ca	37	11	48177366	48177366	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PTPRJ	NM_002843	exon20	c.T3243C	p.R1081R	.	.	190	6	156	0	.	541
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1664717	1664717	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PXDN	NM_012293	exon14	c.C1773A	p.R591R	.	.	98	12	74	0	.	166
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52366111	52366111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	PXDNL	NM_144651	exon10	c.C1217A	p.T406N	.	.	364	109	344	1	.	70
RAB11FIP1	80223	bcgsc.ca	37	8	37735021	37735021	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RAB11FIP1	NM_025151	exon2	c.A420G	p.G140G	.	.	73	4	111	0	.	92
RAI1	10743	bcgsc.ca	37	17	17696914	17696914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RAI1	NM_030665	exon3	c.A652G	p.T218A	.	.	164	9	220	5	.	91
RANBP17	64901	bcgsc.ca	37	5	170395357	170395357	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RANBP17	NM_022897	exon14	c.T1686C	p.G562G	.	.	207	6	164	0	.	524
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170305242	170305242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RANBP17	NM_022897	exon2	c.G160C	p.G54R	.	.	304	58	283	0	.	524
RANBP6	26953	broad.mit.edu	37	9	6012658	6012658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RANBP6	NM_012416	exon1	c.A2950C	p.I984L	.	.	377	11	309	0	.	229
RANBP6	26953	hgsc.bcm.edu	37	9	6012698	6012698	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RANBP6	NM_012416	exon1	c.C2910A	p.T970T	.	.	313	13	252	0	.	229
RAPGEF3	10411	bcgsc.ca	37	12	48137393	48137393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RAPGEF3	NM_001098531	exon18	c.T1745C	p.V582A	.	.	86	5	99	1	.	660
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204354662	204354662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RAPH1	NM_213589	exon4	c.A377G	p.H126R	.	.	569	34	433	0	.	1151
RBMS3	27303	bcgsc.ca	37	3	29985737	29985737	+	Silent	SNP	T	T	C	rs145055854		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RBMS3	NM_001003793	exon12	c.T1090C	p.L364L	.	.	240	6	186	1	T|1.000;C|0.000	90
RECQL	5965	bcgsc.ca	37	12	21623998	21623998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RECQL	NM_032941	exon15	c.T1702C	p.S568P	.	.	272	7	178	0	.	228
RGS9	8787	bcgsc.ca	37	17	63156456	63156456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RGS9	NM_001081955	exon4	c.A311G	p.Q104R	.	.	129	7	112	1	.	94
RHAG	6005	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49604389	49604389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RHAG	NM_000324	exon1	c.T137C	p.I46T	.	.	371	82	224	2	.	154
RHBDL1	9028	broad.mit.edu;bcgsc.ca	37	16	727801	727802	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RHBDL1	NM_003961	exon7	c.1066_1067insA	p.A356fs	.	.	10	4	44	0	.	90
RNF121	55298	bcgsc.ca	37	11	71671816	71671816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RNF121	NM_018320	exon3	c.A122G	p.H41R	.	.	69	4	59	0	.	226
RNF145	153830	bcgsc.ca	37	5	158630642	158630642	+	Missense_Mutation	SNP	T	T	C	rs202186112		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RNF145	NM_001199380	exon2	c.A74G	p.K25R	.	.	81	6	55	0	.	525
RNF5	6048	bcgsc.ca	37	6	32148078	32148078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RNF5	NM_006913	exon6	c.T518C	p.F173S	.	.	67	4	44	0	.	226
ROS1	6098	bcgsc.ca	37	6	117746749	117746749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ROS1	NM_002944	exon1	c.T71C	p.V24A	.	.	168	6	137	0	.	1353
RPS4Y2	140032	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	22941543	22941543	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001039567	exon6	c.C681T	p.V227V	.	.	305	128	339	0	.	.
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78704429	78704429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	RPTOR,NS,carcinoma,0	RPTOR	NM_001163034	exon5	c.G577A	p.V193I	.	.	131	16	134	0	.	847
RPUSD1	113000	bcgsc.ca	37	16	836913	836913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RPUSD1	NM_058192	exon5	c.A425G	p.K142R	.	.	112	5	154	2	.	90
RSAD1	55316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48557383	48557383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RSAD1	NM_018346	exon3	c.C412G	p.P138A	.	.	131	20	144	0	.	90
RTL1	388015	broad.mit.edu	37	14	101350681	101350681	+	Missense_Mutation	SNP	T	T	C	rs111477324		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RTL1	NM_001134888	exon1	c.A445G	p.T149A	.	.	549	11	476	1	T|0.500;C|0.500	46
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	186915400	186915400	+	Missense_Mutation	SNP	A	A	T	rs41469544	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RTP1	NM_153708	exon1	c.A97T	p.T33S	.	.	255	46	244	0	.	155
RWDD2A	112611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83904246	83904249	+	Frame_Shift_Del	DEL	CAAG	CAAG	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CAAG	CAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	RWDD2A	NM_033411	exon2	c.76_79del	p.26_27del	.	.	132	16	124	0	.	68
SAMD9	54809	broad.mit.edu	37	7	92733326	92733326	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SAMD9	NM_001193307	exon2	c.C2085A	p.Y695X	.	.	380	8	316	0	.	140
SASS6	163786	broad.mit.edu	37	1	100584585	100584585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SASS6	NM_194292	exon7	c.A658G	p.K220E	.	.	816	9	534	0	.	70
SCGB1A1	7356	bcgsc.ca	37	11	62189796	62189796	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SCGB1A1	NM_003357	exon2	c.A159G	p.Q53Q	.	.	183	6	172	0	.	90
SCN3A	6328	bcgsc.ca	37	2	165969509	165969509	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SCN3A	NM_006922	exon21	c.T3729C	p.A1243A	.	.	219	6	200	0	.	141
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62018994	62018994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SCN4A	NM_000334	exon24	c.C4648A	p.P1550T	.	.	92	21	115	0	.	93
SCYL1	57410	bcgsc.ca	37	11	65293080	65293080	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SCYL1	NM_020680	exon2	c.T147C	p.D49D	.	.	67	4	62	0	.	333
SERTAD4	56256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210415122	210415122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SERTAD4	NM_019605	exon4	c.C511G	p.P171A	.	.	200	30	138	0	.	92
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31979928	31979928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SFI1	NM_001007467	exon13	c.C1316A	p.P439H	.	.	151	29	109	0	.	90
SH3BP4	23677	bcgsc.ca	37	2	235950890	235950890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	SH3BP4,NS,malignant_melanoma,-2	SH3BP4	NM_014521	exon4	c.A1477G	p.T493A	.	.	183	6	150	0	.	94
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152058972	152058972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SH3D19	NM_001009555	exon15	c.A1568T	p.Y523F	.	.	134	30	95	0	.	92
SH3GLB1	51100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	87189994	87189994	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SH3GLB1	NM_001206653	exon4	c.178-2A>G	.	.	.	452	93	254	0	.	90
SHPK	23729	bcgsc.ca	37	17	3524543	3524543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SHPK	NM_013276	exon5	c.A811G	p.R271G	.	.	55	4	47	0	.	69
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45194931	45194931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC13A3	NM_022829	exon11	c.C1431A	p.F477L	.	.	139	19	140	0	.	91
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172749745	172749745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC25A12	NM_003705	exon2	c.T36A	p.D12E	.	.	333	55	264	0	.	90
SLC35B2	347734	bcgsc.ca	37	6	44223076	44223076	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC35B2	NM_178148	exon4	c.T666C	p.P222P	.	.	151	5	175	0	.	91
SLC39A8	64116	bcgsc.ca	37	4	103184322	103184322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC39A8	NM_022154	exon8	c.A1262G	p.E421G	.	.	245	7	173	0	.	90
SLC4A3	6508	broad.mit.edu	37	2	220495017	220495017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC4A3	NM_201574	exon6	c.C835T	p.P279S	.	.	27	4	34	0	.	157
SLC4A7	9497	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27473077	27473077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC4A7	NM_003615	exon7	c.T835G	p.S279A	.	.	225	50	183	1	.	94
SLC7A3	84889	bcgsc.ca	37	X	70148105	70148105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC7A3	NM_032803	exon5	c.T710C	p.L237S	.	.	123	6	112	0	.	132
SLC9A7	84679	bcgsc.ca	37	X	46508192	46508192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLC9A7	NM_001257291	exon11	c.T1391C	p.L464P	.	.	84	4	72	0	.	132
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	173570862	173570862	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_178527	exon2	c.C54A	p.C18X	.	.	425	66	305	0	.	.
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173570863	173570863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_178527	exon2	c.G53A	p.C18Y	.	.	429	69	302	0	.	.
SLCO1B3	28234	broad.mit.edu	37	12	21051375	21051375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SLCO1B3	NM_019844	exon14	c.T1688C	p.V563A	.	.	1449	14	1076	0	.	155
SMARCA4	6597	bcgsc.ca	37	19	11135053	11135053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMARCA4	NM_003072	exon21	c.T3020C	p.L1007P	.	.	77	6	74	2	.	1523
SMARCE1	6605	broad.mit.edu;bcgsc.ca	37	17	38787170	38787170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMARCE1	NM_003079	exon10	c.G823A	p.G275S	.	.	107	5	95	0	.	227
SMG6	23293	bcgsc.ca	37	17	2200616	2200616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMG6	NM_017575	exon4	c.A2072G	p.K691R	.	.	131	5	124	2	.	228
SMYD2	56950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214501025	214501025	+	Silent	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SMYD2	NM_020197	exon7	c.G663T	p.L221L	.	.	187	65	149	0	.	227
SORCS3	22986	bcgsc.ca	37	10	107015515	107015515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SORCS3	NM_014978	exon24	c.A3293G	p.K1098R	.	.	155	7	171	1	.	99
SPAM1	6677	bcgsc.ca	37	7	123594229	123594229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPAM1	NM_153189	exon3	c.A605G	p.E202G	.	.	205	8	187	2	.	94
SPATA12	353324	bcgsc.ca	37	3	57107843	57107843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPATA12	NM_181727	exon2	c.A121G	p.T41A	.	.	120	6	130	0	.	90
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172835457	172835457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPATA16	NM_031955	exon2	c.T65G	p.V22G	.	.	783	165	698	1	.	94
SPDYE1	285955	bcgsc.ca	37	7	44046934	44046934	+	Missense_Mutation	SNP	G	G	A	rs200388629	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	SPDYE1,NS,carcinoma,-2	SPDYE1	NM_175064	exon5	c.G700A	p.G234R	.	.	483	15	515	4	G|0.981;A|0.019	91
SPG7	6687	bcgsc.ca	37	16	89611143	89611143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPG7	NM_003119	exon10	c.T1412C	p.L471P	.	.	83	4	99	0	.	226
SPHK1	8877	bcgsc.ca	37	17	74382569	74382569	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPHK1	NM_182965	exon5	c.T612C	p.A204A	.	.	57	5	44	0	.	1107
SPICE1	152185	bcgsc.ca	37	3	113176170	113176170	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SPICE1	NM_144718	exon13	c.A1470G	p.P490P	.	.	155	5	116	0	.	70
SRD5A2	6716	bcgsc.ca	37	2	31756450	31756450	+	RNA	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	179	6	111	0	.	.
STAC	6769	bcgsc.ca	37	3	36485084	36485084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STAC	NM_003149	exon2	c.A340G	p.I114V	.	.	51	4	66	0	.	94
STAMBP	10617	bcgsc.ca	37	2	74087228	74087228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STAMBP	NM_006463	exon10	c.T1168C	p.C390R	.	.	139	6	84	0	.	524
STAT2	6773	broad.mit.edu;bcgsc.ca	37	12	56742939	56742954	+	Frame_Shift_Del	DEL	TCCCCTACCTGAAGGT	TCCCCTACCTGAAGGT	-	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	TCCCCTACCTGAAGGT	TCCCCTACCTGAAGGT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STAT2	NM_005419	exon16	c.1433_1440del	p.478_480del	.	.	99	9	90	0	.	847
STC1	6781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23712004	23712004	+	Silent	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STC1	NM_003155	exon1	c.G33A	p.L11L	.	.	273	67	232	0	.	94
STEAP1B	256227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22533400	22533400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_001164460	exon3	c.A140T	p.Q47L	.	.	574	114	498	0	.	.
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61788154	61788154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STRADA	NM_001003787	exon7	c.G391T	p.V131L	.	.	156	28	127	0	.	547
STUB1	10273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	732214	732214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STUB1	NM_005861	exon6	c.T719C	p.M240T	.	.	56	22	96	0	.	226
STX12	23673	bcgsc.ca	37	1	28128228	28128228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	STX12	NM_177424	exon4	c.T328C	p.F110L	.	.	191	7	113	0	.	153
SUGP2	10147	bcgsc.ca	37	19	19137002	19137002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SUGP2	NM_014884	exon3	c.A155G	p.E52G	.	.	60	5	36	2	.	91
SVEP1	79987	bcgsc.ca	37	9	113241995	113241995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SVEP1	NM_153366	exon13	c.T2407C	p.F803L	.	.	222	6	179	0	.	75
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	33592365	33592365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	SYT10	NM_198992	exon1	c.G93A	p.W31X	.	.	144	12	130	0	.	92
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123843041	123843041	+	Silent	SNP	G	G	T	rs201912981	alternate_allele	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TACC2	NM_206862	exon4	c.G1026T	p.P342P	.	.	80	18	83	0	G|0.999;A|0.001	296
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19166175	19166175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TAS1R2	NM_152232	exon6	c.A2438G	p.Y813C	.	.	266	29	259	0	.	93
TBC1D29	26083	bcgsc.ca	37	17	28887667	28887667	+	Silent	SNP	T	T	C	rs78888987	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TBC1D29	NM_015594	exon3	c.T111C	p.D37D	.	.	146	17	121	2	T|0.934;C|0.066	22
TBL1X	6907	bcgsc.ca	37	X	9621708	9621708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TBL1X	NM_001139466	exon4	c.T82C	p.F28L	.	.	48	4	55	0	.	131
TEKT3	64518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15211984	15211984	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TEKT3	NM_031898	exon8	c.T1253A	p.L418Q	.	.	110	20	163	0	.	92
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45810698	45810699	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TESK2	NM_007170	exon11	c.1530_1531insCA	p.H510fs	.	.	151	21	148	0	.	624
TEX15	56154	bcgsc.ca	37	8	30700573	30700573	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TEX15	NM_031271	exon1	c.T5961C	p.C1987C	.	.	361	8	340	0	.	97
TFEB	7942	bcgsc.ca	37	6	41653922	41653922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TFEB	NM_001167827	exon8	c.G899T	p.R300L	.	.	124	5	123	0	.	659
TFIP11	24144	bcgsc.ca	37	22	26892101	26892101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TFIP11	NM_001008697	exon13	c.A1787G	p.K596R	.	.	71	4	58	0	.	90
TIE1	7075	bcgsc.ca	37	1	43783281	43783281	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TIE1	NM_005424	exon16	c.A2667G	p.E889E	.	.	223	6	184	0	.	1404
TIMMDC1	51300	bcgsc.ca	37	3	119236105	119236105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TIMMDC1	NM_016589	exon6	c.T650C	p.V217A	.	.	121	5	99	0	.	91
TINF2	26277	bcgsc.ca	37	14	24711202	24711202	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TINF2	NM_012461	exon3	c.193-2A>G	.	.	.	113	5	129	1	.	227
TMEM202	338949	bcgsc.ca	37	15	72690641	72690641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TMEM202	.	.	.	.	.	.	86	20	71	0	.	69
TMEM9B	56674	bcgsc.ca	37	11	8974835	8974835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TMEM9B	NM_020644	exon4	c.T356C	p.M119T	.	.	196	6	152	0	.	90
TNFRSF10D	8793	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23002148	23002148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TNFRSF10D	NM_003840	exon7	c.G769T	p.V257F	.	.	83	15	103	1	.	651
TONSL	4796	bcgsc.ca	37	8	145660434	145660434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TONSL	NM_013432	exon19	c.A2972G	p.D991G	.	.	94	6	74	0	.	92
TP53	7157	ucsc.edu	37	17	7578454	7578454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C476T	p.A159V	.	.	61	2	82	0	.	70225
TRMT44	152992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	8469997	8469997	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_152544	exon9	c.G1851A	p.A617A	.	.	145	13	138	0	.	.
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234878427	234878427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TRPM8	NM_024080	exon16	c.T2114A	p.V705E	.	.	642	108	583	1	.	94
TTC24	164118	bcgsc.ca	37	1	156552218	156552218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TTC24	NM_001105669	exon3	c.A902G	p.D301G	.	.	60	4	67	1	.	46
TTC3	7267	bcgsc.ca	37	21	38570194	38570194	+	Silent	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TTC3	NM_001001894	exon44	c.A5718G	p.G1906G	.	.	70	4	86	0	.	590
TTI1	9675	broad.mit.edu	37	20	36641060	36641060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TTI1	NM_014657	exon3	c.C1159T	p.R387C	.	.	203	4	162	0	.	94
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179449459	179449459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TTN	NM_001267550	exon310	c.G64909A	p.E21637K	.	.	157	6	145	0	.	636
TUBGCP6	85378	bcgsc.ca	37	22	50656757	50656757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	TUBGCP6	NM_020461	exon23	c.G5029A	p.V1677M	.	.	108	5	82	0	.	93
UBR5	51366	bcgsc.ca	37	8	103317317	103317317	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	UBR5	NM_015902	exon21	c.A2823G	p.E941E	.	.	415	9	304	0	.	761
URB1	9875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33691583	33691583	+	Silent	SNP	G	G	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_014825	exon36	c.C5736T	p.A1912A	.	.	99	26	114	0	.	.
URI1	8725	mdanderson.org	37	19	30500143	30500143	+	Silent	SNP	T	T	C	rs1127493	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_003796	exon8	c.T918C	p.D306D	.	.	100	24	88	0	T|0.979;C|0.021	.
USP25	29761	bcgsc.ca	37	21	17138391	17138391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	USP25	NM_013396	exon3	c.A199G	p.T67A	.	.	97	5	96	0	.	663
VCAN	1462	broad.mit.edu;bcgsc.ca	37	5	82816737	82816737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	VCAN	NM_004385	exon7	c.A2612G	p.E871G	.	.	180	9	144	0	.	238
VEZT	55591	bcgsc.ca	37	12	95693963	95693963	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	VEZT	NM_017599	exon12	c.T1854C	p.P618P	.	.	141	6	99	0	.	23
WBP11	51729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14943652	14943652	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WBP11	NM_016312	exon10	c.A1047G	p.V349V	.	.	372	67	308	0	.	92
WDFY1	57590	bcgsc.ca	37	2	224809980	224809980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WDFY1	NM_020830	exon1	c.A22G	p.R8G	.	.	30	4	34	0	.	226
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85707240	85707240	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	WDFY3	NM_014991	exon24	c.A3954G	p.P1318P	.	.	244	44	207	0	.	93
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	38378259	38378259	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_031951	exon6	c.G5935T	p.E1979X	.	.	799	152	628	1	.	.
ZAP70	7535	broad.mit.edu	37	2	98349771	98349771	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZAP70	NM_001079	exon7	c.C802G	p.P268A	.	.	54	5	77	0	.	955
ZBED1	9189	bcgsc.ca	37	X	2407316	2407316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZBED1	NM_001171135	exon2	c.T1445C	p.L482P	.	.	162	6	201	1	.	40
ZFAND6	54469	bcgsc.ca	37	15	80423614	80423614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZFAND6	NM_001242913	exon7	c.A457G	p.R153G	.	.	303	7	207	0	.	90
ZFP3	124961	bcgsc.ca	37	17	4995873	4995873	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZFP3	NM_153018	exon2	c.T1074C	p.I358I	.	.	98	5	89	0	.	90
ZFPM2	23414	bcgsc.ca	37	8	106456595	106456595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZFPM2	NM_012082	exon3	c.A287G	p.D96G	.	.	175	6	93	1	.	139
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44471487	44471487	+	Silent	SNP	A	A	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF221	NM_013359	exon6	c.A1833C	p.L611L	.	.	98	18	66	0	.	91
ZNF318	24149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43306777	43306777	+	Silent	SNP	T	T	A	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF318	NM_014345	exon10	c.A4959T	p.L1653L	.	.	295	60	240	2	.	157
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54080469	54080469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF331	NM_001253801	exon5	c.G655T	p.D219Y	.	.	152	25	136	1	.	663
ZNF471	57573	broad.mit.edu	37	19	57027762	57027762	+	Missense_Mutation	SNP	T	T	C	rs201587530		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF471	NM_020813	exon3	c.T152C	p.V51A	.	.	316	9	214	1	.	154
ZNF486	90649	bcgsc.ca	37	19	20308836	20308836	+	Silent	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF486	NM_052852	exon4	c.T1317C	p.C439C	.	.	232	6	184	0	.	47
ZNF529	57711	bcgsc.ca	37	19	37045596	37045596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF529	NM_001145649	exon5	c.A211G	p.N71D	.	.	192	6	166	1	.	67
ZNF724P	440519	bcgsc.ca	37	19	23406203	23406203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF724P	.	.	.	.	.	.	62	5	52	0	.	23
ZNF74	7625	broad.mit.edu	37	22	20754985	20754985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF74	NM_003426	exon3	c.T184C	p.S62P	.	.	214	8	171	0	.	91
ZNF768	79724	broad.mit.edu;mdanderson.org	37	16	30536127	30536127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF768	NM_024671	exon2	c.C1334G	p.A445G	.	.	62	14	80	0	.	90
ZNF816	125893	hgsc.bcm.edu	37	19	53454475	53454475	+	Missense_Mutation	SNP	C	C	T	rs79186164	byfrequency	TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	ZNF816	NM_001202457	exon4	c.G553A	p.G185S	.	.	274	10	216	0	C|0.993;T|0.007	68
ZSWIM6	57688	mdanderson.org	37	5	60628502	60628502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	NM_020928	exon1	c.G403T	p.G135C	.	.	23	4	28	0	.	.
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7404886	7404887	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.G730W	.	.	.	.	.	.	.	
AC083760.1	0	bcgsc.ca	37	18	41619462	41619463	+	RNA	DNP	TC	TC	AT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	.	.	.	.	.	
CHEK2	11200	broad.mit.edu	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	TG	TG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.K416E	.	.	.	.	.	.	.	
IGKV2-28	28921	bcgsc.ca	37	2	89521489	89521490	+	Splice_Site	DNP	CC	CC	AT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	.	.	.	.	.	.	.	.	
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164906413	164906414	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.V736M	.	.	.	.	.	.	.	
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	85446949	85446950	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-CC-5262-01A-01D-A12Z-10	TCGA-CC-5262-10B-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93083c92-9303-48e6-aa25-4bb4ba6764b5	48faa33d-3094-4b3b-8c61-d29f392591ff	.	.	.	.	.	p.T426N	.	.	.	.	.	.	.	
