Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASS	10157	bcgsc.ca	37	7	121738535	121738535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AASS	NM_005763	exon15	c.T1624C	p.F542L	.	.	231	6	229	0	.	92
ABCA13	154664	bcgsc.ca	37	7	48313377	48313377	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCA13	NM_152701	exon17	c.T4114C	p.L1372L	.	.	147	5	173	0	.	521
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1051263	1051263	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCA7	NM_019112	exon20	c.A2794T	p.K932X	.	.	85	27	53	0	.	98
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183667834	183667834	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCC5	NM_005688	exon21	c.A3024T	p.A1008A	.	.	143	45	105	0	.	137
ABHD8	79575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17412326	17412326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABHD8	NM_024527	exon2	c.A100T	p.T34S	.	.	49	23	26	0	.	90
ACOT7	11332	bcgsc.ca	37	1	6393627	6393627	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ACOT7	NM_181864	exon4	c.T450C	p.G150G	.	.	83	4	101	0	.	514
ADAM18	8749	bcgsc.ca	37	8	39442870	39442870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ADAM18	NM_001190956	exon2	c.A131G	p.K44R	.	.	213	6	225	1	.	228
ADAMTS20	80070	bcgsc.ca	37	12	43777453	43777453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ADAMTS20	NM_025003	exon31	c.A4705G	p.I1569V	.	.	346	9	335	2	.	795
ADARB1	104	bcgsc.ca	37	21	46596026	46596026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ADARB1	NM_001160230	exon4	c.A410G	p.K137R	.	.	222	7	161	0	.	91
ADH1A	124	broad.mit.edu	37	4	100203625	100203625	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ADH1A	NM_000667	exon6	c.T706C	p.L236L	.	.	864	7	984	3	.	227
AEBP1	165	bcgsc.ca	37	7	44150392	44150392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AEBP1	NM_001129	exon12	c.A1469G	p.N490S	.	.	93	4	58	0	.	90
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	12	58135737	58135737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AGAP2	NM_014770	exon1	c.G118A	p.E40K	.	.	337	10	269	2	.	716
AGO1	26523	bcgsc.ca	37	1	36367875	36367875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_012199	exon11	c.A1334G	p.E445G	.	.	120	5	49	0	.	.
AGTPBP1	23287	bcgsc.ca	37	9	88248288	88248288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AGTPBP1	NM_015239	exon14	c.A1184G	p.D395G	.	.	89	4	88	0	.	158
AGXT2L1	64850	bcgsc.ca	37	4	109670621	109670621	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AGXT2L1	NM_001146627	exon8	c.528-2A>G	.	.	.	73	4	53	0	.	91
AIM1	202	bcgsc.ca	37	6	106969298	106969298	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AIM1	NM_001624	exon2	c.T2991C	p.S997S	.	.	147	6	135	0	.	139
AKAP12	9590	bcgsc.ca	37	6	151671923	151671923	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AKAP12	NM_005100	exon4	c.T2397C	p.G799G	.	.	99	5	53	0	.	293
AKAP17A	8227	bcgsc.ca	37	X	1712891	1712891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AKAP17A	NM_005088	exon2	c.A536G	p.E179G	.	.	126	6	78	0	.	40
ALKBH1	8846	bcgsc.ca	37	14	78170791	78170791	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ALKBH1	NM_006020	exon2	c.T213C	p.S71S	.	.	164	6	129	1	.	228
AMFR	267	bcgsc.ca	37	16	56401375	56401375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AMFR	NM_001144	exon12	c.A1580G	p.E527G	.	.	79	4	116	0	.	1009
ANAPC7	51434	bcgsc.ca	37	12	110812114	110812114	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ANAPC7	NM_016238	exon11	c.T1635C	p.S545S	.	.	126	5	74	0	.	226
ANKFY1	51479	ucsc.edu	37	17	4071207	4071207	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ANKFY1	NM_001257999	exon26	c.3504-2A>G	.	.	.	39	4	52	0	.	93
ANKRD44	91526	bcgsc.ca	37	2	197953437	197953437	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ANKRD44	NM_001195144	exon12	c.A1245G	p.G415G	.	.	135	5	97	0	.	230
ANKRD55	79722	bcgsc.ca	37	5	55528693	55528693	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ANKRD55	NM_024669	exon2	c.T48C	p.D16D	.	.	123	6	122	0	.	91
ANO1	55107	bcgsc.ca	37	11	69962600	69962600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ANO1	NM_018043	exon8	c.A892G	p.R298G	.	.	63	4	61	0	.	47
ANXA2P2	304	bcgsc.ca	37	9	33624434	33624434	+	RNA	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	227	7	188	1	.	.
AOAH	313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	36633945	36633945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AOAH	NM_001637	exon12	c.G938A	p.G313E	.	.	213	12	146	0	.	91
APBB1	322	bcgsc.ca	37	11	6416802	6416802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	APBB1	NM_001164	exon14	c.T2095C	p.S699P	.	.	112	5	52	1	.	136
APBB1IP	54518	bcgsc.ca	37	10	26825068	26825068	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	APBB1IP	NM_019043	exon10	c.T966C	p.D322D	.	.	196	6	182	0	.	652
APIP	51074	bcgsc.ca	37	11	34912093	34912093	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	APIP	NM_015957	exon3	c.A165G	p.E55E	.	.	98	5	118	0	.	226
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47428285	47428285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ARAF	NM_001256196	exon11	c.G1254T	p.Q418H	.	.	106	84	62	0	.	1557
ARRDC5	645432	bcgsc.ca	37	19	4891463	4891463	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001080523	exon3	c.A624G	p.T208T	.	.	78	4	45	0	.	.
ARSA	410	bcgsc.ca	37	22	51065144	51065144	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ARSA	NM_001085426	exon5	c.T729C	p.R243R	.	.	123	5	75	0	.	92
ASNSD1	54529	bcgsc.ca	37	2	190535209	190535209	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ASNSD1	NM_019048	exon6	c.T1689C	p.S563S	.	.	279	7	204	0	.	93
ATP1B3	483	bcgsc.ca	37	3	141626056	141626056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ATP1B3	NM_001679	exon3	c.A286G	p.S96G	.	.	143	5	93	0	.	90
ATP2A2	488	bcgsc.ca	37	12	110784244	110784244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ATP2A2	NM_170665	exon20	c.A3098G	p.D1033G	.	.	206	6	145	1	.	94
AUTS2	26053	bcgsc.ca	37	7	70239040	70239040	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AUTS2	NM_015570	exon12	c.T1857C	p.A619A	.	.	92	4	77	0	.	92
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	300	2	232	0	.	90
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	668557	668557	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	B4GALNT3	NM_173593	exon19	c.G2858A	p.W953X	.	.	93	34	69	0	.	92
B4GALNT4	338707	bcgsc.ca	37	11	375522	375522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	B4GALNT4	NM_178537	exon9	c.A845G	p.Y282C	.	.	68	4	44	0	.	91
BCL9	607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147092307	147092307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BCL9	NM_004326	exon8	c.A2346T	p.R782S	.	.	120	33	66	1	.	707
BECN1	8678	bcgsc.ca	37	17	40963702	40963702	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BECN1	NM_003766	exon11	c.A1155G	p.K385K	.	.	213	6	143	0	.	228
BECN1	8678	bcgsc.ca	37	17	40971593	40971593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BECN1	NM_003766	exon4	c.T233C	p.V78A	.	.	147	5	176	1	.	228
BMP1	649	bcgsc.ca	37	8	22037926	22037926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BMP1	NM_001199	exon8	c.C1007T	p.P336L	.	.	80	4	79	0	.	155
BMP2K	55589	bcgsc.ca	37	4	79754747	79754747	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BMP2K	NM_017593	exon3	c.T309C	p.S103S	.	.	91	5	152	0	.	383
BMP2K	55589	bcgsc.ca	37	4	79831987	79831987	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BMP2K	NM_198892	exon16	c.A2286G	p.E762E	.	.	161	5	208	0	.	383
BMPR1B	658	bcgsc.ca	37	4	96073804	96073804	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BMPR1B	NM_001256793	exon10	c.A1353G	p.E451E	.	.	143	5	309	0	.	1378
BTN2A2	10385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26390936	26390936	+	Splice_Site	SNP	G	G	A	rs200463511		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BTN2A2	NM_001197238	exon6	c.952+1G>A	.	.	.	694	199	513	2	G|0.999;A|0.001	90
C11orf95	65998	broad.mit.edu	37	11	63533381	63533381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001144936	exon2	c.G535T	p.A179S	.	.	128	8	73	1	.	.
C19orf25	148223	bcgsc.ca	37	19	1475192	1475192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_152482	exon3	c.A196G	p.S66G	.	.	79	6	45	0	.	.
C1orf111	284680	bcgsc.ca	37	1	162346499	162346499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C1orf111	NM_182581	exon1	c.T82C	p.S28P	.	.	115	5	54	0	.	69
C20orf26	26074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20056165	20056165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C20orf26	NM_015585	exon6	c.G472T	p.G158W	.	.	169	69	161	1	.	94
C2CD2	25966	bcgsc.ca	37	21	43334816	43334816	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C2CD2	NM_015500	exon6	c.T735C	p.A245A	.	.	154	6	106	0	.	91
C4orf21	55345	bcgsc.ca	37	4	113540509	113540509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C4orf21	NM_018392	exon6	c.A689G	p.N230S	.	.	85	4	88	0	.	90
C7orf31	136895	bcgsc.ca	37	7	25181867	25181867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C7orf31	NM_138811	exon9	c.C944A	p.P315Q	.	.	154	5	129	0	.	90
C8orf31	286122	bcgsc.ca	37	8	144124593	144124593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C8orf31	NM_173687	exon3	c.A100G	p.R34G	.	.	75	4	47	1	.	91
C8orf48	157773	bcgsc.ca	37	8	13425115	13425115	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001007090	exon1	c.A615G	p.K205K	.	.	52	4	74	0	.	.
CA5A	763	bcgsc.ca	37	16	87970022	87970022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CA5A	NM_001739	exon1	c.T35C	p.F12S	.	.	62	4	95	0	.	90
CADM4	199731	bcgsc.ca	37	19	44131826	44131826	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CADM4	NM_145296	exon2	c.C181A	p.R61R	.	.	75	4	112	0	.	90
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71571275	71571275	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CALN1	NM_031468	exon4	c.C249A	p.I83I	.	.	56	20	45	0	.	91
CARD9	64170	bcgsc.ca	37	9	139266415	139266415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CARD9	NM_052813	exon2	c.T116C	p.V39A	.	.	165	8	91	0	.	229
CATSPERB	79820	bcgsc.ca	37	14	92105441	92105441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CATSPERB	NM_024764	exon16	c.A1586G	p.Q529R	.	.	138	5	96	0	.	138
CATSPERG	57828	bcgsc.ca	37	19	38855562	38855562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CATSPERG	NM_021185	exon21	c.A2507G	p.D836G	.	.	67	4	68	0	.	92
CC2D2B	387707	bcgsc.ca	37	10	97772371	97772371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CC2D2B	NM_001001732	exon4	c.T203C	p.V68A	.	.	221	6	239	0	.	69
CCDC108	255101	bcgsc.ca;mdanderson.org	37	2	219893116	219893116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CCDC108	NM_194302	exon12	c.T1658C	p.L553P	.	.	224	88	139	2	.	94
CCDC125	202243	bcgsc.ca	37	5	68578733	68578733	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CCDC125	NM_176816	exon11	c.T1359C	p.P453P	.	.	142	5	184	0	.	90
CCDC135	84229	bcgsc.ca	37	16	57765092	57765092	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CCDC135	NM_032269	exon18	c.C2547T	p.A849A	.	.	100	5	147	1	.	90
CCDC171	203238	bcgsc.ca	37	9	15695261	15695261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_173550	exon11	c.A1244G	p.E415G	.	.	146	5	117	0	.	.
CCDC70	83446	bcgsc.ca	37	13	52439820	52439820	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CCDC70	NM_031290	exon2	c.A306G	p.K102K	.	.	63	4	56	0	.	90
CD164	8763	ucsc.edu	37	6	109703520	109703520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CD164	NM_006016	exon1	c.T62C	p.L21P	.	.	46	4	27	0	.	90
CD19	930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28946809	28946809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CD19	NM_001178098	exon5	c.G880A	p.A294T	.	.	607	217	394	2	.	92
CDK13	8621	bcgsc.ca	37	7	40118353	40118353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CDK13	NM_003718	exon11	c.A2932G	p.M978V	.	.	118	5	105	0	.	548
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56846403	56846403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP135	NM_025009	exon12	c.A1568T	p.Q523L	.	.	432	168	502	0	.	94
CEP192	55125	bcgsc.ca	37	18	13087595	13087595	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP192	NM_032142	exon32	c.A5943G	p.S1981S	.	.	71	4	62	1	.	27
CEP72	55722	bcgsc.ca	37	5	639316	639316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP72	NM_018140	exon8	c.T1319C	p.L440P	.	.	221	12	73	1	.	69
CEP76	79959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12691398	12691398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP76	NM_024899	exon7	c.G893T	p.R298L	.	.	205	101	162	1	.	90
CEP85	64793	hgsc.bcm.edu	37	1	26570728	26570729	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP85	NM_022778	exon3	c.127_128insG	p.R43fs	.	.	279	17	196	0	.	90
CHD5	26038	bcgsc.ca	37	1	6173018	6173018	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CHD5	NM_015557	exon34	c.G4953A	p.L1651L	.	.	81	4	128	0	.	719
CHD5	26038	bcgsc.ca	37	1	6188944	6188944	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CHD5	NM_015557	exon23	c.C3573T	p.D1191D	.	.	54	4	61	0	.	719
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21878045	21878045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CHD8	NM_001170629	exon10	c.C2329T	p.R777W	.	.	311	30	331	0	.	277
CHD9	80205	bcgsc.ca	37	16	53320182	53320182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CHD9	NM_025134	exon26	c.T5116C	p.F1706L	.	.	83	4	112	0	.	272
CLCN4	1183	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10174772	10174772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CLCN4	NM_001830	exon8	c.G799T	p.A267S	.	.	212	158	152	5	.	134
CLOCK	9575	bcgsc.ca	37	4	56304696	56304696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CLOCK	NM_004898	exon22	c.A2114G	p.Q705R	.	.	165	5	98	0	.	515
CLPTM1L	81037	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1344860	1344860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CLPTM1L	NM_030782	exon1	c.A97C	p.T33P	.	.	199	50	57	3	.	153
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57759022	57759022	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CLTC	NM_004859	exon21	c.T3264C	p.H1088H	.	.	179	93	147	0	.	835
COG6	57511	bcgsc.ca	37	13	40251680	40251680	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COG6	NM_001145079	exon5	c.T504C	p.S168S	.	.	77	4	135	1	.	227
COL14A1	7373	bcgsc.ca	37	8	121209050	121209050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COL14A1	NM_021110	exon6	c.A457G	p.T153A	.	.	335	8	242	1	.	543
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139736902	139736902	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COL22A1	NM_152888	exon25	c.G2203T	p.G735X	.	.	45	10	38	1	.	103
COL6A3	1293	bcgsc.ca	37	2	238283333	238283333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COL6A3	NM_004369	exon8	c.A3401G	p.Q1134R	.	.	81	6	31	0	.	526
COL8A1	1295	bcgsc.ca	37	3	99513987	99513987	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COL8A1	NM_001850	exon5	c.A1242G	p.G414G	.	.	74	4	38	1	.	90
CPT1A	1374	bcgsc.ca	37	11	68530202	68530202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CPT1A	NM_001876	exon15	c.G1768A	p.E590K	.	.	75	4	54	0	.	149
CR2	1380	bcgsc.ca	37	1	207648272	207648272	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CR2	NM_001006658	exon14	c.A2427G	p.Q809Q	.	.	232	6	157	1	.	232
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29119458	29119458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CRLF3	NM_015986	exon6	c.G959A	p.R320K	.	.	131	46	116	0	.	90
CROCC	9696	broad.mit.edu	37	1	17257071	17257071	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CROCC	NM_014675	exon7	c.G831A	p.A277A	.	.	105	4	53	2	.	137
CTU2	348180	bcgsc.ca	37	16	88776362	88776362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CTU2	NM_001012759	exon3	c.T160C	p.F54L	.	.	91	5	89	0	.	23
CUBN	8029	bcgsc.ca	37	10	16992076	16992076	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CUBN	NM_001081	exon34	c.A5004G	p.E1668E	.	.	62	4	54	0	.	166
CYB5R3	1727	bcgsc.ca	37	22	43032795	43032795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYB5R3	NM_001171660	exon2	c.T178C	p.F60L	.	.	57	4	63	0	.	91
CYP20A1	57404	bcgsc.ca	37	2	204116767	204116767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYP20A1	NM_177538	exon4	c.A367G	p.R123G	.	.	313	7	266	1	.	90
CYP24A1	1591	bcgsc.ca	37	20	52775660	52775660	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYP24A1	NM_000782	exon8	c.A993G	p.T331T	.	.	232	6	179	0	.	228
CYP26A1	1592	ucsc.edu	37	10	94834174	94834174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYP26A1	NM_000783	exon2	c.T299C	p.I100T	.	.	40	4	25	0	.	155
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47610101	47610101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYP4A22	NM_001010969	exon7	c.A863G	p.H288R	.	.	435	176	325	1	.	139
DEPDC1	55635	broad.mit.edu	37	1	68948251	68948251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DEPDC1	NM_001114120	exon8	c.T1240C	p.S414P	.	.	582	9	500	1	.	90
DFNB31	25861	bcgsc.ca	37	9	117186799	117186799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DFNB31	NM_001173425	exon6	c.T1231C	p.S411P	.	.	73	7	38	0	.	95
DIAPH3	81624	bcgsc.ca	37	13	60616856	60616856	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DIAPH3	NM_001042517	exon5	c.T594C	p.S198S	.	.	72	4	115	1	.	516
DMRTC2	63946	bcgsc.ca	37	19	42354731	42354731	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DMRTC2	NM_001040283	exon8	c.T954C	p.P318P	.	.	51	5	55	1	.	90
DNAH1	25981	bcgsc.ca	37	3	52434355	52434355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNAH1	NM_015512	exon78	c.A12691G	p.T4231A	.	.	73	4	93	0	.	67
DNAH2	146754	bcgsc.ca	37	17	7700568	7700568	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNAH2	NM_020877	exon50	c.T7938C	p.H2646H	.	.	89	4	102	0	.	102
DNAH9	1770	bcgsc.ca	37	17	11865335	11865335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNAH9	NM_001372	exon68	c.A12995G	p.E4332G	.	.	58	4	76	0	.	168
DNAJC13	23317	bcgsc.ca	37	3	132209882	132209882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNAJC13	NM_015268	exon32	c.A3610G	p.S1204G	.	.	82	4	90	0	.	272
DNAJC14	85406	bcgsc.ca	37	12	56221041	56221041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNAJC14	NM_032364	exon2	c.G1402A	p.V468M	.	.	77	4	71	0	.	229
DNAJC28	54943	hgsc.bcm.edu	37	21	34860757	34860757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNAJC28	NM_001040192	exon2	c.A944T	p.N315I	.	.	536	37	402	0	.	90
DNM1L	10059	broad.mit.edu	37	12	32895565	32895565	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DNM1L	NM_012062	exon19	c.A2037G	p.K679K	.	.	457	8	210	0	.	92
DOCK7	85440	bcgsc.ca	37	1	63099184	63099184	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DOCK7	NM_001271999	exon10	c.A1101G	p.E367E	.	.	220	6	189	1	.	92
DOK1	1796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74783904	74783904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DOK1	NM_001381	exon5	c.C1109A	p.P370Q	.	.	113	36	82	2	.	226
DPY19L2P1	554236	bcgsc.ca	37	7	35131548	35131548	+	RNA	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	268	26	233	10	.	.
DPYSL3	1809	bcgsc.ca	37	5	146798026	146798026	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DPYSL3	NM_001197294	exon3	c.T639C	p.G213G	.	.	200	9	170	0	.	91
DRAXIN	374946	bcgsc.ca	37	1	11771915	11771915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_198545	exon4	c.A650G	p.Q217R	.	.	82	5	62	0	.	.
DSC1	1823	bcgsc.ca	37	18	28736034	28736034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DSC1	NM_004948	exon4	c.T443C	p.L148S	.	.	307	7	196	0	.	94
DUOX2	50506	broad.mit.edu	37	15	45403967	45403967	+	Missense_Mutation	SNP	A	A	G	rs199957468		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DUOX2	NM_014080	exon5	c.T512C	p.L171P	.	.	46	11	23	1	A|0.987;G|0.013	95
DUOX2	50506	broad.mit.edu	37	15	45403978	45403978	+	Silent	SNP	G	G	A	rs76681174		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DUOX2	NM_014080	exon5	c.C501T	p.N167N	.	.	59	14	29	0	G|0.989;A|0.011	95
DUS3L	56931	bcgsc.ca	37	19	5787678	5787678	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DUS3L	NM_020175	exon6	c.C1134T	p.A378A	.	.	74	4	41	0	.	90
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7129551	7129551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DVL2	NM_004422	exon15	c.A1844C	p.K615T	.	.	25	14	14	0	.	659
DYM	54808	bcgsc.ca	37	18	46858335	46858335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DYM	NM_017653	exon8	c.A662G	p.N221S	.	.	77	4	58	0	.	226
DYNC1LI1	51143	bcgsc.ca	37	3	32572010	32572010	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DYNC1LI1	NM_016141	exon9	c.T1083C	p.F361F	.	.	82	4	103	0	.	91
DYNC2H1	79659	bcgsc.ca	37	11	103018605	103018605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DYNC2H1	NM_001377	exon19	c.A2807G	p.K936R	.	.	95	4	163	0	.	68
E2F8	79733	bcgsc.ca	37	11	19255938	19255938	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	E2F8	NM_024680	exon6	c.T897C	p.H299H	.	.	184	6	188	0	.	91
EDN2	1907	hgsc.bcm.edu	37	1	41948229	41948230	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EDN2	NM_001956	exon3	c.252_253insC	p.P84fs	.	.	109	7	58	0	.	90
EFHC2	80258	bcgsc.ca	37	X	44108061	44108061	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EFHC2	NM_025184	exon6	c.C960T	p.F320F	.	.	79	4	68	0	.	135
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38427282	38427282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EGFLAM	NM_001205301	exon14	c.T1982A	p.F661Y	.	.	165	43	104	0	.	187
EIF3B	8662	bcgsc.ca	37	7	2418396	2418396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF3B	NM_001037283	exon16	c.T2227C	p.S743P	.	.	63	4	53	0	.	68
EIF4E3	317649	ucsc.edu;bcgsc.ca	37	3	71748795	71748795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF4E3	NM_001134651	exon3	c.A314G	p.H105R	.	.	50	5	72	0	.	90
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21231426	21231426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF4G3	NM_001198802	exon13	c.C1552T	p.P518S	.	.	393	144	372	0	.	91
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45004003	45004003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ELMO2	NM_182764	exon12	c.A937G	p.R313G	.	.	206	76	152	0	.	91
EMR1	2015	bcgsc.ca	37	19	6903903	6903903	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EMR1	NM_001256253	exon7	c.T744C	p.P248P	.	.	151	5	114	0	.	526
EPHA7	2045	bcgsc.ca	37	6	94124458	94124458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EPHA7	NM_004440	exon2	c.A125G	p.Q42R	.	.	104	5	84	0	.	1453
EPHB3	2049	bcgsc.ca	37	3	184299369	184299369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EPHB3	NM_004443	exon16	c.A2956G	p.M986V	.	.	154	6	76	0	.	1455
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50732464	50732464	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ERCC6	NM_000124	exon5	c.A1012T	p.K338X	.	.	985	364	736	2	.	1153
ERI1	90459	bcgsc.ca	37	8	8877899	8877899	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ERI1	NM_153332	exon6	c.A732G	p.Q244Q	.	.	285	8	427	2	.	68
EVA1B	55194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	36788575	36788575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_018166	exon2	c.C64G	p.R22G	.	.	256	82	175	1	.	.
EXOC6B	23233	bcgsc.ca	37	2	72411306	72411306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EXOC6B	NM_015189	exon21	c.T2207C	p.L736P	.	.	170	5	137	0	.	68
EXPH5	23086	bcgsc.ca	37	11	108409852	108409852	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EXPH5	NM_015065	exon3	c.T342C	p.P114P	.	.	177	6	225	1	.	95
EYA1	2138	bcgsc.ca	37	8	72268712	72268712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EYA1	NM_172060	exon1	c.T10C	p.F4L	.	.	141	6	110	0	.	652
EZH2	2146	bcgsc.ca	37	7	148507477	148507477	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EZH2	NM_004456	exon17	c.A1977G	p.R659R	.	.	90	4	71	0	.	3699
FAH	2184	bcgsc.ca	37	15	80473396	80473396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAH	NM_000137	exon13	c.T1075C	p.F359L	.	.	157	6	106	1	.	90
FAM122B	159090	bcgsc.ca	37	X	133930177	133930177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAM122B	NM_001170756	exon1	c.T59C	p.L20P	.	.	60	4	43	0	.	130
FAM134C	162427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40733882	40733889	+	Frame_Shift_Del	DEL	CAGAAGTT	CAGAAGTT	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	CAGAAGTT	CAGAAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAM134C	NM_178126	exon9	c.1343_1350del	p.448_450del	.	.	98	22	47	0	.	70
FAM182B	728882	ucsc.edu	37	20	25755462	25755462	+	RNA	SNP	G	G	T	rs71286794	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	48	10	22	2	AGGCTCTGCTGGG|0.500;GGGCTCTGCTGGA|0.500	.
FAM208A	23272	bcgsc.ca	37	3	56700345	56700345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001112736	exon7	c.T965C	p.V322A	.	.	87	4	132	1	.	.
FAM211B	388886	bcgsc.ca	37	22	24985832	24985832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_207644	exon2	c.A263G	p.D88G	.	.	71	5	43	1	.	.
FAM214A	56204	bcgsc.ca	37	15	52897342	52897342	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_019600	exon7	c.T2448C	p.L816L	.	.	121	5	151	1	.	.
FAM53C	51307	bcgsc.ca	37	5	137682598	137682598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAM53C	NM_001135647	exon5	c.T1129C	p.C377R	.	.	85	6	86	0	.	91
FAM65C	140876	bcgsc.ca	37	20	49203811	49203811	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAM65C	NM_080829	exon22	c.A2799G	p.E933E	.	.	145	5	116	0	.	92
FANCL	55120	bcgsc.ca	37	2	58431359	58431359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FANCL	NM_018062	exon6	c.T377C	p.L126P	.	.	152	6	110	0	.	661
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039104	80039104	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FASN	NM_004104	exon38	c.C6531T	p.R2177R	.	.	113	68	43	0	.	90
FBXW7	55294	bcgsc.ca	37	4	153245371	153245371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FBXW7	NM_033632	exon11	c.A1820G	p.D607G	.	.	166	5	187	0	.	6296
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16853235	16853235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGF20	NM_019851	exon2	c.C319A	p.L107M	.	.	103	56	152	0	.	522
FGFBP1	9982	ucsc.edu;bcgsc.ca	37	4	15937856	15937856	+	Missense_Mutation	SNP	C	C	T	rs143214990	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGFBP1	NM_005130	exon3	c.G400A	p.V134M	.	.	445	181	397	2	C|0.999;G|0.001	90
FGFR2	2263	bcgsc.ca	37	10	123247623	123247623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGFR2	NM_022970	exon14	c.T1871C	p.I624T	.	.	270	7	209	0	.	2607
FGL1	2267	bcgsc.ca	37	8	17722224	17722224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGL1	NM_201553	exon9	c.C816A	p.S272R	.	.	105	5	116	1	.	90
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024218	76024218	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FILIP1	NM_015687	exon5	c.A1330T	p.K444X	.	.	662	328	457	1	.	94
FMNL3	91010	bcgsc.ca	37	12	50047094	50047094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FMNL3	NM_175736	exon13	c.T1238C	p.L413P	.	.	211	6	140	1	.	228
FNBP1	23048	broad.mit.edu	37	9	132757170	132757170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_015033	exon2	c.T92C	p.F31S	.	.	501	10	415	1	.	.
FNBP4	23360	bcgsc.ca	37	11	47755638	47755638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FNBP4	NM_015308	exon10	c.A1625G	p.E542G	.	.	100	4	93	1	.	91
FNDC3A	22862	bcgsc.ca	37	13	49710699	49710699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FNDC3A	NM_001079673	exon6	c.A722G	p.K241R	.	.	68	4	85	0	.	278
FNIP2	57600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159790073	159790073	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FNIP2	NM_020840	exon13	c.A2285T	p.Q762L	.	.	99	39	59	1	.	68
FOXJ3	22887	bcgsc.ca	37	1	42655033	42655033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FOXJ3	NM_001198851	exon12	c.A1394G	p.E465G	.	.	91	4	75	0	.	228
FPGT	8790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74671212	74671212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FPGT	NM_003838	exon4	c.G1481T	p.G494V	.	.	206	72	214	1	.	91
FTX	100302692	bcgsc.ca	37	X	73351631	73351631	+	RNA	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	119	5	83	2	.	.
FZD3	7976	bcgsc.ca	37	8	28413388	28413388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FZD3	NM_017412	exon7	c.A1687G	p.T563A	.	.	88	5	89	0	.	659
G3BP2	9908	bcgsc.ca	37	4	76582113	76582113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	G3BP2	NM_012297	exon5	c.A437G	p.D146G	.	.	74	5	100	0	.	153
GATA3-AS1	399717	broad.mit.edu;mdanderson.org	37	10	8093125	8093125	+	RNA	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	216	98	139	2	.	.
GATM	2628	bcgsc.ca	37	15	45668992	45668992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GATM	NM_001482	exon2	c.T95C	p.V32A	.	.	67	5	37	0	.	90
GLI1	2735	bcgsc.ca	37	12	57865431	57865431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GLI1	NM_005269	exon12	c.T2908C	p.C970R	.	.	83	4	59	0	.	722
GLRA1	2741	bcgsc.ca	37	5	151208627	151208627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GLRA1	NM_000171	exon8	c.T914C	p.V305A	.	.	63	5	64	0	.	91
GLRB	2743	bcgsc.ca	37	4	158057657	158057657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GLRB	NM_000824	exon5	c.A334G	p.N112D	.	.	195	7	185	0	.	92
GNAI2	2771	bcgsc.ca	37	3	50273829	50273829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GNAI2	NM_002070	exon1	c.A62G	p.K21R	.	.	44	4	55	0	.	417
GOLGA4	2803	broad.mit.edu	37	3	37369176	37369176	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GOLGA4	NM_001172713	exon15	c.C5865T	p.A1955A	.	.	141	4	192	0	.	93
GORAB	92344	bcgsc.ca	37	1	170521192	170521192	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GORAB	NM_152281	exon5	c.A774G	p.A258A	.	.	87	4	80	0	.	90
GP6	51206	bcgsc.ca	37	19	55549599	55549599	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GP6	NM_016363	exon1	c.T6C	p.S2S	.	.	102	5	74	0	.	92
GP6	51206	bcgsc.ca	37	19	55549601	55549601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GP6	NM_016363	exon1	c.T4C	p.S2P	.	.	100	5	73	0	.	92
GPR111	222611	bcgsc.ca	37	6	47649351	47649351	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GPR111	NM_153839	exon7	c.A852G	p.E284E	.	.	148	6	99	0	.	91
GPR116	221395	bcgsc.ca	37	6	46834865	46834865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GPR116	NM_015234	exon13	c.A1631G	p.H544R	.	.	130	6	111	0	.	91
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	89910835	89910835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GPR98	NM_032119	exon2	c.C206A	p.S69X	.	.	110	63	227	0	.	103
GRHL2	79977	broad.mit.edu;bcgsc.ca	37	8	102676736	102676736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GRHL2	NM_024915	exon15	c.A1753G	p.S585G	.	.	205	7	147	0	.	93
GRM7	2917	bcgsc.ca	37	3	7340419	7340419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GRM7	NM_000844	exon3	c.A785G	p.D262G	.	.	109	5	140	0	.	526
GSG2	83903	bcgsc.ca	37	17	3628724	3628724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GSG2	NM_031965	exon1	c.T1495C	p.F499L	.	.	125	5	170	1	.	297
GSTA7P	730152	bcgsc.ca	37	6	52606416	52606416	+	RNA	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	82	4	86	0	.	.
GUCY2D	3000	bcgsc.ca	37	17	7917996	7917996	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GUCY2D	NM_000180	exon13	c.C2490T	p.N830N	.	.	60	4	61	0	.	319
HAS3	3038	bcgsc.ca	37	16	69143431	69143431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HAS3	NM_138612	exon2	c.T133C	p.F45L	.	.	62	4	87	0	.	90
HEATR1	55127	bcgsc.ca;mdanderson.org	37	1	236749628	236749628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HEATR1	NM_018072	exon15	c.A1840G	p.T614A	.	.	514	218	540	3	.	93
HEATR5B	54497	bcgsc.ca	37	2	37292960	37292960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HEATR5B	NM_019024	exon9	c.T1271C	p.L424P	.	.	160	6	146	0	.	142
HEPHL1	341208	bcgsc.ca	37	11	93808419	93808419	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HEPHL1	NM_001098672	exon9	c.A1584G	p.P528P	.	.	124	5	168	0	.	71
HERC2	8924	bcgsc.ca	37	15	28408298	28408298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HERC2	NM_004667	exon69	c.A10688G	p.D3563G	.	.	75	5	36	0	.	234
HERC2P2	400322	bcgsc.ca	37	15	23326329	23326329	+	RNA	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	339	47	258	1	.	.
HHLA1	10086	bcgsc.ca	37	8	133117454	133117454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001145095	exon1	c.T59C	p.V20A	.	.	127	5	72	0	.	.
HIVEP2	3097	bcgsc.ca	37	6	143092827	143092827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HIVEP2	NM_006734	exon5	c.T3049C	p.S1017P	.	.	160	5	104	0	.	95
HKDC1	80201	bcgsc.ca	37	10	70992779	70992779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HKDC1	NM_025130	exon4	c.T385C	p.Y129H	.	.	64	4	55	0	.	95
HLA-A	3105	broad.mit.edu	37	6	29910607	29910607	+	Silent	SNP	G	G	C	rs72555397		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HLA-A	NM_001242758	exon2	c.G147C	p.V49V	.	.	184	12	55	0	.	92
HMGXB3	22993	bcgsc.ca	37	5	149389695	149389695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HMGXB3	NM_014983	exon4	c.A334G	p.T112A	.	.	128	5	107	0	.	24
HOOK3	84376	bcgsc.ca	37	8	42819600	42819600	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HOOK3	NM_032410	exon9	c.C762T	p.L254L	.	.	96	5	82	0	.	154
HOXB9	3219	hgsc.bcm.edu	37	17	46703431	46703431	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HOXB9	NM_024017	exon1	c.C201T	p.S67S	.	.	15	10	2	0	.	90
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	177017653	177017653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HOXD4	NM_014621	exon2	c.G751C	p.D251H	.	.	138	52	86	0	.	91
HTT	3064	broad.mit.edu;bcgsc.ca	37	4	3208362	3208362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HTT	NM_002111	exon43	c.T5858C	p.F1953S	.	.	207	6	176	0	.	281
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160454027	160454027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	IGF2R	NM_000876	exon9	c.G1099T	p.G367X	.	.	197	59	143	0	.	118
IKBKE	9641	broad.mit.edu	37	1	206648228	206648228	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	IKBKE	NM_001193322	exon5	c.A249G	p.V83V	.	.	218	4	166	2	.	1061
IL17REL	400935	bcgsc.ca	37	22	50436740	50436740	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	IL17REL	NM_001001694	exon11	c.602-2A>G	.	.	.	165	7	88	0	.	23
INPP4B	8821	ucsc.edu	37	4	143094941	143094941	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	INPP4B	NM_003866	exon17	c.C1203A	p.Y401X	.	.	442	163	445	4	.	228
IRGM	345611	bcgsc.ca	37	5	150228144	150228144	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001145805	exon2	c.C459T	p.S153S	.	.	204	6	155	1	.	.
IRX5	10265	bcgsc.ca	37	16	54965160	54965160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	IRX5	NM_001252197	exon1	c.T50C	p.L17P	.	.	102	5	61	1	.	90
ISY1	57461	bcgsc.ca	37	3	128859306	128859306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ISY1	NM_001199469	exon7	c.A323G	p.D108G	.	.	182	6	201	1	.	90
ITGA3	3675	hgsc.bcm.edu	37	17	48165169	48165170	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ITGA3	NM_005501	exon24	c.2981_2982insG	p.L994fs	.	.	164	11	69	0	.	229
ITGAD	3681	broad.mit.edu	37	16	31429697	31429697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ITGAD	NM_005353	exon22	c.A2692G	p.S898G	.	.	286	6	200	1	.	226
ITK	3702	bcgsc.ca	37	5	156672759	156672759	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ITK	NM_005546	exon14	c.A1473G	p.G491G	.	.	159	6	150	2	.	1427
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93483123	93483123	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ITPK1	NM_001142593	exon4	c.G144A	p.E48E	.	.	71	34	47	0	.	115
JMJD1C	221037	bcgsc.ca	37	10	64945412	64945412	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	JMJD1C	NM_032776	exon20	c.A6741G	p.K2247K	.	.	138	5	119	0	.	275
KBTBD12	166348	broad.mit.edu;bcgsc.ca	37	3	127642504	127642504	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KBTBD12	NM_207335	exon1	c.A600G	p.R200R	.	.	172	6	180	1	.	23
KCNJ18	100134444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21319449	21319449	+	Silent	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001194958	exon3	c.G795C	p.V265V	.	.	184	34	136	1	.	.
KCTD16	57528	broad.mit.edu	37	5	143586754	143586754	+	Silent	SNP	C	C	T	rs200806853		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KCTD16	NM_020768	exon3	c.C477T	p.A159A	.	.	168	4	113	0	C|0.999;T|0.001	137
KHSRP	8570	bcgsc.ca	37	19	6417783	6417783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KHSRP	NM_003685	exon11	c.A1048G	p.N350D	.	.	134	6	81	0	.	226
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416830	6416830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KHSRP	NM_003685	exon13	c.G1246A	p.G416S	.	.	34	14	31	0	.	226
KIAA1033	23325	bcgsc.ca	37	12	105504978	105504978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA1033	NM_015275	exon2	c.A137G	p.E46G	.	.	83	5	122	0	.	91
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123274094	123274094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA1109	NM_015312	exon79	c.G13885A	p.V4629I	.	.	152	52	121	0	.	80
KIAA2022	340533	bcgsc.ca	37	X	73961828	73961828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA2022	NM_001008537	exon3	c.T2564C	p.L855P	.	.	141	9	104	3	.	183
KIAA2026	158358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5922996	5922996	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA2026	NM_001017969	exon8	c.G3000A	p.Q1000Q	.	.	356	112	316	2	.	92
KIF11	3832	bcgsc.ca	37	10	94381219	94381219	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF11	NM_004523	exon10	c.A1206G	p.E402E	.	.	89	4	77	0	.	227
KIF13A	63971	broad.mit.edu	37	6	17837169	17837169	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF13A	NM_001105567	exon11	c.A1095G	p.K365K	.	.	470	8	243	0	.	137
KIF16B	55614	bcgsc.ca	37	20	16410554	16410554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	KIF16B,upper_arm,malignant_melanoma,+1	KIF16B	NM_001199865	exon13	c.T1376C	p.I459T	.	.	86	4	84	1	.	291
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	72343926	72343926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF19	NM_153209	exon9	c.G935A	p.G312E	.	.	50	13	26	0	.	90
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245847619	245847619	+	Silent	SNP	G	G	A	rs201075952		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF26B	NM_018012	exon11	c.G2343A	p.A781A	.	.	124	42	68	0	G|0.999;A|0.001	25
KL	9365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33638123	33638123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KL	NM_004795	exon5	c.A2839G	p.I947V	.	.	225	51	322	0	.	155
KLHL33	123103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20897958	20897958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001109997	exon2	c.C877A	p.L293I	.	.	76	24	66	0	.	.
KLKB1	3818	bcgsc.ca	37	4	187171516	187171516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KLKB1	NM_000892	exon7	c.T718C	p.F240L	.	.	303	8	217	1	.	227
KRT26	353288	broad.mit.edu	37	17	38925214	38925214	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT26	NM_181539	exon6	c.G1104A	p.L368L	.	.	568	8	340	0	.	90
KRT28	162605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38955214	38955214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT28	NM_181535	exon2	c.T488C	p.L163P	.	.	782	217	595	0	.	91
KRT78	196374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53237937	53237937	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT78	NM_173352	exon6	c.C987T	p.I329I	.	.	402	152	289	0	.	188
LAMA5	3911	bcgsc.ca	37	20	60899555	60899555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LAMA5	NM_005560	exon42	c.T5585C	p.V1862A	.	.	96	6	64	0	.	93
LAP3	51056	bcgsc.ca	37	4	17583436	17583436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LAP3	NM_015907	exon3	c.A272G	p.Q91R	.	.	155	5	110	0	.	90
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29001267	29001267	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LAT	NM_001014989	exon12	c.C744A	p.S248S	.	.	161	53	95	0	.	44
LCP2	3937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169697820	169697820	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LCP2	NM_005565	exon7	c.C426T	p.D142D	.	.	348	124	242	1	.	23
LGALS3BP	3959	bcgsc.ca	37	17	76973242	76973242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LGALS3BP	NM_005567	exon2	c.T32C	p.L11P	.	.	79	5	34	0	.	515
LOC100132247	0	broad.mit.edu;bcgsc.ca	37	16	22545898	22545898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001135865	exon7	c.A1594C	p.T532P	.	.	104	23	53	1	.	.
LOC100289092	0	broad.mit.edu;bcgsc.ca	37	16	28890418	28890418	+	RNA	SNP	A	A	G	rs201535825		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	236	90	196	1	A|0.999;G|0.000	.
LOC644669	0	bcgsc.ca	37	18	15325973	15325973	+	RNA	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	251	127	179	1	.	.
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	451	14	358	1	.	.
LPGAT1	9926	bcgsc.ca	37	1	212002478	212002478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LPGAT1	NM_014873	exon2	c.T161C	p.F54S	.	.	282	7	212	1	.	92
LPO	4025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56342176	56342176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LPO	NM_006151	exon10	c.C1360T	p.P454S	.	.	428	229	217	4	.	91
LRP8	7804	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	53715153	53715153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LRP8	NM_004631	exon18	c.C2752A	p.P918T	.	.	141	53	88	3	.	90
LRRC27	80313	bcgsc.ca	37	10	134145099	134145099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LRRC27	.	.	.	.	.	.	104	5	59	0	.	91
LRRC37A4P	55073	broad.mit.edu	37	17	43587526	43587526	+	RNA	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	353	9	218	0	.	.
LRRC43	254050	bcgsc.ca	37	12	122670846	122670846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LRRC43	NM_001098519	exon3	c.A521G	p.K174R	.	.	64	4	42	0	.	135
LRRC8B	23507	bcgsc.ca	37	1	90058563	90058563	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LRRC8B	NM_015350	exon6	c.T2373C	p.P791P	.	.	134	6	156	2	.	92
LRRN1	57633	bcgsc.ca	37	3	3886959	3886959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LRRN1	NM_020873	exon2	c.A634G	p.K212E	.	.	64	4	87	0	.	90
LUZP2	338645	bcgsc.ca	37	11	25004743	25004743	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LUZP2	NM_001009909	exon9	c.T669C	p.P223P	.	.	208	7	222	3	.	92
LYG1	129530	broad.mit.edu	37	2	99907867	99907867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LYG1	NM_174898	exon5	c.A166G	p.R56G	.	.	318	11	241	3	.	68
LZTR1	8216	bcgsc.ca	37	22	21344686	21344686	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LZTR1	NM_006767	exon8	c.T663C	p.S221S	.	.	115	5	84	1	.	280
MAATS1	89876	broad.mit.edu;bcgsc.ca	37	3	119452224	119452224	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_033364	exon10	c.T1215C	p.L405L	.	.	233	8	250	0	.	.
MAP1A	4130	bcgsc.ca	37	15	43813179	43813179	+	RNA	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MAP1A	.	.	.	.	.	.	87	4	65	0	.	141
MAP4K2	5871	bcgsc.ca	37	11	64567669	64567669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MAP4K2	NM_004579	exon12	c.A827G	p.Q276R	.	.	48	4	31	0	.	360
MASP1	5648	bcgsc.ca	37	3	186961401	186961401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MASP1	NM_139125	exon9	c.T1099C	p.C367R	.	.	251	7	235	1	.	94
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27459791	27459791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MASTL	NM_032844	exon8	c.A1903T	p.M635L	.	.	139	49	110	0	.	522
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99693701	99693701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MCM7	NM_005916	exon11	c.G1291T	p.G431C	.	.	94	35	69	0	.	651
MED12L	116931	bcgsc.ca	37	3	151097954	151097954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MED12L	NM_053002	exon30	c.A4427G	p.K1476R	.	.	180	6	178	0	.	576
MIA3	375056	bcgsc.ca	37	1	222802251	222802251	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MIA3	NM_198551	exon4	c.A1689G	p.A563A	.	.	104	5	65	0	.	98
MIR221	407006	bcgsc.ca	37	X	45605602	45605602	+	RNA	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	131	5	97	1	.	.
MLL5	55904	bcgsc.ca	37	7	104752918	104752918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLL5	NM_018682	exon26	c.T4715C	p.L1572P	.	.	77	4	56	1	.	93
MLLT4	4301	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168271129	168271129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLLT4	NM_001207008	exon3	c.G365A	p.R122Q	.	.	234	23	160	2	.	685
MLPH	79083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238449167	238449167	+	Silent	SNP	G	G	A	rs202229121		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLPH	NM_024101	exon10	c.G1281A	p.A427A	.	.	25	14	21	0	G|0.999;A|0.000	91
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158817665	158817665	+	Missense_Mutation	SNP	C	C	A	rs139902913	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MNDA	NM_002432	exon6	c.C1135A	p.R379S	.	.	145	58	127	0	C|1.000;T|0.000	94
MORC2	22880	bcgsc.ca	37	22	31337977	31337977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MORC2	NM_014941	exon9	c.T413C	p.I138T	.	.	228	7	176	0	.	92
MORN4	118812	bcgsc.ca	37	10	99376497	99376497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MORN4	NM_001098831	exon4	c.T230C	p.F77S	.	.	156	5	110	0	.	90
MPP2	4355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41958848	41958848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MPP2	NM_005374	exon7	c.A791C	p.Q264P	.	.	105	30	55	0	.	90
MPPE1	65258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11889442	11889442	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MPPE1	NM_001242904	exon4	c.A438T	p.P146P	.	.	203	50	135	0	.	90
MROH1	727957	bcgsc.ca	37	8	145267939	145267939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001099280	exon13	c.T1184C	p.V395A	.	.	144	7	78	1	.	.
MST1P2	11209	ucsc.edu	37	1	16974549	16974549	+	RNA	SNP	C	C	G	rs71240336		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	.	.	176	27	94	10	C|0.500;G|0.500	.
MTMR1	8776	bcgsc.ca	37	X	149905114	149905114	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MTMR1	NM_003828	exon10	c.A1104G	p.E368E	.	.	93	4	94	0	.	131
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9045799	9045799	+	Silent	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC16	NM_024690	exon5	c.C35832G	p.T11944T	.	.	455	148	313	0	.	566
MUC17	140453	bcgsc.ca	37	7	100675245	100675245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC17	NM_001040105	exon3	c.A548G	p.D183G	.	.	88	4	73	0	.	95
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100680120	100680120	+	Missense_Mutation	SNP	C	C	A	rs147991653	byfrequency	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC17	NM_001040105	exon3	c.C5423A	p.T1808N	.	.	240	30	180	6	C|0.989;A|0.011	95
MUC4	4585	broad.mit.edu	37	3	195512568	195512568	+	Silent	SNP	T	T	C	rs71254296	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC4	NM_018406	exon2	c.A5883G	p.V1961V	.	.	273	12	213	2	GT|0.500;AC|0.500	90
MUC6	4588	bcgsc.ca	37	11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	.	.	2818	81	2053	42	.	23
MUC6	4588	bcgsc.ca	37	11	1017566	1017566	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC6	NM_005961	exon31	c.C5235T	p.T1745T	.	.	1724	56	1414	32	.	23
MYCBPAP	84073	bcgsc.ca	37	17	48602290	48602290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYCBPAP	NM_032133	exon13	c.A1817G	p.E606G	.	.	115	7	74	1	.	230
MYH6	4624	bcgsc.ca	37	14	23856783	23856783	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYH6	NM_002471	exon32	c.G4605A	p.L1535L	.	.	289	8	234	0	.	94
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23902387	23902387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYH7	NM_000257	exon4	c.T251C	p.F84S	.	.	288	111	248	2	.	94
MYLK3	91807	hgsc.bcm.edu;mdanderson.org	37	16	46766546	46766546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYLK3	NM_182493	exon4	c.G1036A	p.G346R	.	.	18	14	8	0	.	374
MYLK4	340156	broad.mit.edu	37	6	2689154	2689154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYLK4	NM_001012418	exon4	c.G272A	p.R91H	.	.	254	6	147	0	.	150
MYO3B	140469	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171242774	171242774	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYO3B	NM_001083615	exon13	c.T1366C	p.L456L	.	.	371	129	296	2	.	530
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52638630	52638630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYO5A	NM_000259	exon30	c.3887delT	p.L1296fs	.	.	274	107	280	0	.	93
MYRIP	25924	bcgsc.ca	37	3	40085724	40085724	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYRIP	NM_015460	exon3	c.C294T	p.H98H	.	.	127	5	124	0	.	94
NAF1	92345	bcgsc.ca	37	4	164050070	164050070	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NAF1	NM_138386	exon8	c.T1464C	p.S488S	.	.	70	4	44	0	.	70
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101717813	101717813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NALCN	NM_052867	exon40	c.G4547A	p.C1516Y	.	.	130	42	64	0	.	167
NCAPD3	23310	bcgsc.ca	37	11	134029896	134029896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NCAPD3	NM_015261	exon29	c.A3758G	p.E1253G	.	.	110	5	145	0	.	229
NCAPD3	23310	bcgsc.ca	37	11	134064589	134064589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NCAPD3	NM_015261	exon14	c.A1660G	p.K554E	.	.	114	5	127	0	.	229
NCKAP5	344148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133547663	133547663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_207481	exon13	c.G1025T	p.S342I	.	.	159	73	120	1	.	.
NCL	4691	hgsc.bcm.edu	37	2	232325414	232325414	+	Missense_Mutation	SNP	T	T	A	rs199689485		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NCL	NM_005381	exon4	c.A777T	p.E259D	.	.	432	39	350	0	.	230
NCR2	9436	bcgsc.ca	37	6	41318573	41318573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NCR2	NM_004828	exon5	c.A802G	p.S268G	.	.	80	4	71	0	.	91
ND2	0	bcgsc.ca	37	MT	4830	4830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	ENST00000361453	exon1	c.G361A	p.G121S	.	.	243	13	136	3	.	.
NES	10763	bcgsc.ca	37	1	156639697	156639697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NES	NM_006617	exon4	c.A4283G	p.E1428G	.	.	199	9	147	7	.	520
NF2	4771	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30050696	30050696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NF2	NM_000268	exon5	c.G498T	p.E166D	.	.	268	117	229	2	.	4696
NFE2	4778	bcgsc.ca	37	12	54686714	54686714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NFE2	NM_001261461	exon4	c.T566C	p.L189S	.	.	131	5	87	0	.	226
NGF	4803	bcgsc.ca	37	1	115829286	115829286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NGF	NM_002506	exon3	c.T131C	p.L44P	.	.	159	5	109	0	.	1083
NKTR	4820	bcgsc.ca	37	3	42679215	42679215	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NKTR	NM_005385	exon13	c.T2019C	p.S673S	.	.	117	5	121	0	.	93
NOM1	64434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156743259	156743259	+	Silent	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NOM1	NM_138400	exon1	c.A828T	p.A276A	.	.	132	57	101	1	.	90
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155718096	155718096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NOX3	NM_015718	exon13	c.C1581A	p.S527R	.	.	159	38	77	0	.	91
NPBWR2	2832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62737266	62737266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NPBWR2	NM_005286	exon1	c.G919A	p.A307T	.	.	73	28	71	0	.	153
NPHP4	261734	bcgsc.ca	37	1	5940282	5940282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NPHP4	NM_015102	exon19	c.A2503G	p.K835E	.	.	68	4	65	0	.	515
NPPA	4878	bcgsc.ca	37	1	11907731	11907731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NPPA	NM_006172	exon1	c.T11C	p.F4S	.	.	178	6	126	1	.	91
NPRL2	10641	bcgsc.ca	37	3	50387102	50387102	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NPRL2	NM_006545	exon3	c.A333G	p.T111T	.	.	98	5	66	0	.	278
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	157186659	157186659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NR4A2	NM_006186	exon3	c.G40A	p.G14R	.	.	147	38	122	0	.	189
NTN3	4917	bcgsc.ca	37	16	2522279	2522279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NTN3	NM_006181	exon1	c.T577C	p.F193L	.	.	85	4	41	0	.	90
NUMA1	4926	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71721833	71721833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUMA1	NM_006185	exon17	c.A4718C	p.K1573T	.	.	46	16	26	0	.	633
NUMBL	9253	bcgsc.ca	37	19	41173448	41173448	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUMBL	NM_004756	exon10	c.A1755G	p.E585E	.	.	89	5	113	1	.	637
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154033436	154033436	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUP210L	NM_001159484	exon19	c.T2730C	p.Y910Y	.	.	324	118	262	0	.	77
OAF	220323	ucsc.edu	37	11	120099649	120099649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OAF	NM_178507	exon4	c.T620G	p.V207G	.	.	40	7	30	11	.	68
OPCML	4978	bcgsc.ca	37	11	132307212	132307212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OPCML	NM_002545	exon4	c.T568C	p.S190P	.	.	154	5	173	0	.	93
OPHN1	4983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	67283856	67283856	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OPHN1	NM_002547	exon21	c.A1998T	p.P666P	.	.	216	168	114	0	.	110
OR10V1	390201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	59481145	59481145	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR10V1	NM_001005324	exon1	c.C174A	p.P58P	.	.	231	10	167	0	.	68
OR11H2	79334	bcgsc.ca	37	14	20181227	20181227	+	Silent	SNP	T	T	C	rs2259906	bycluster;byhapmap	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001197287	exon2	c.A849G	p.T283T	.	.	1623	308	1431	8	C|1.000;|0.000	.
OR11H4	390442	bcgsc.ca	37	14	20710974	20710974	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR11H4	NM_001004479	exon1	c.A24G	p.L8L	.	.	207	7	140	0	.	69
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102359072	102359072	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR4F15	NM_001001674	exon1	c.A683T	p.H228L	.	.	989	257	611	0	.	68
OR4M1	441670	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20249422	20249422	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR4M1	NM_001005500	exon1	c.G941A	p.X314X	.	.	554	98	494	1	.	68
OR5B21	219968	bcgsc.ca	37	11	58275473	58275473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR5B21	NM_001005218	exon1	c.A106G	p.T36A	.	.	163	7	117	1	.	71
OR5M10	390167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56345082	56345082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001004741	exon1	c.T116A	p.L39Q	.	.	508	195	418	2	.	.
OR5W2	390148	bcgsc.ca	37	11	55681260	55681260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR5W2	NM_001001960	exon1	c.T799C	p.S267P	.	.	220	6	202	0	.	70
OR6C75	390323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55759521	55759521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR6C75	NM_001005497	exon1	c.G627T	p.L209F	.	.	466	174	406	1	.	70
OSBPL6	114880	bcgsc.ca	37	2	179197417	179197417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OSBPL6	NM_001201482	exon7	c.T422C	p.M141T	.	.	193	6	202	0	.	69
OSBPL8	114882	bcgsc.ca	37	12	76779951	76779951	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OSBPL8	NM_020841	exon14	c.A1530G	p.E510E	.	.	211	6	245	0	.	69
OTOL1	131149	bcgsc.ca	37	3	161221612	161221612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001080440	exon4	c.A1316G	p.D439G	.	.	183	6	160	0	.	.
OXTR	5021	bcgsc.ca	37	3	8809216	8809216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OXTR	NM_000916	exon3	c.T658C	p.Y220H	.	.	63	4	96	0	.	68
PADI6	353238	bcgsc.ca	37	1	17715043	17715043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PADI6	NM_207421	exon7	c.T847C	p.S283P	.	.	174	6	103	0	.	113
PARK7	11315	bcgsc.ca	37	1	8025445	8025445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PARK7	NM_007262	exon3	c.T152C	p.V51A	.	.	172	7	224	3	.	226
PCDH11X	27328	broad.mit.edu	37	X	91642802	91642802	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PCDH11X	NM_001168360	exon5	c.A3213G	p.G1071G	.	.	649	9	489	5	.	193
PCDH19	57526	bcgsc.ca	37	X	99662888	99662888	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PCDH19	NM_001184880	exon1	c.G708A	p.P236P	.	.	120	5	62	0	.	110
PCIF1	63935	bcgsc.ca	37	20	44571845	44571845	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PCIF1	NM_022104	exon8	c.T783C	p.P261P	.	.	87	6	71	0	.	91
PDCD6	10016	broad.mit.edu	37	5	272886	272886	+	Missense_Mutation	SNP	C	C	G	rs199941631		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDCD6	NM_013232	exon2	c.C162G	p.N54K	.	.	933	26	449	15	C|0.999;G|0.001	290
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165846593	165846593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDE10A	NM_001130690	exon7	c.G562C	p.G188R	.	.	323	84	231	0	.	519
PDE3B	5140	hgsc.bcm.edu	37	11	14665851	14665851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDE3B	NM_000922	exon1	c.G230T	p.R77L	.	.	17	11	0	0	.	90
PDGFRA	5156	bcgsc.ca	37	4	55141135	55141135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDGFRA	NM_006206	exon12	c.T1781C	p.V594A	.	.	113	5	99	2	.	9497
PDXDC1	23042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	15126797	15126797	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDXDC1	NM_015027	exon18	c.A1651T	p.K551X	.	.	138	52	124	0	.	91
PGLYRP4	57115	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153314164	153314164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PGLYRP4	NM_020393	exon6	c.G564T	p.Q188H	.	.	132	55	77	1	.	94
PHF21B	112885	bcgsc.ca	37	22	45404461	45404461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PHF21B	NM_138415	exon2	c.A85G	p.R29G	.	.	54	5	41	1	.	93
PHTF1	10745	bcgsc.ca	37	1	114254579	114254579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PHTF1	NM_006608	exon8	c.A940G	p.R314G	.	.	280	7	280	0	.	91
PHTF2	57157	broad.mit.edu	37	7	77583129	77583129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PHTF2	NM_001127357	exon17	c.C2153T	p.P718L	.	.	513	7	438	1	.	23
PIGS	94005	bcgsc.ca	37	17	26890524	26890524	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PIGS	NM_033198	exon5	c.A393G	p.L131L	.	.	90	5	69	0	.	289
PIWIL2	55124	bcgsc.ca	37	8	22140593	22140593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PIWIL2	NM_001135721	exon5	c.A472G	p.R158G	.	.	121	6	132	1	.	91
PKD2	5311	bcgsc.ca	37	4	88977397	88977397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PKD2	NM_000297	exon8	c.T1876C	p.F626L	.	.	184	6	231	0	.	91
PKHD1	5314	bcgsc.ca	37	6	51613428	51613428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PKHD1	NM_170724	exon58	c.T8986C	p.F2996L	.	.	154	7	96	0	.	603
PKHD1	5314	bcgsc.ca	37	6	51771134	51771134	+	Silent	SNP	A	A	G	rs148497044	byfrequency	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PKHD1	NM_170724	exon41	c.T6687C	p.S2229S	.	.	103	5	51	0	A|0.999;G|0.001	603
PLCG1	5335	bcgsc.ca	37	20	39798857	39798857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PLCG1	NM_182811	exon24	c.T2756C	p.L919P	.	.	136	5	111	2	.	911
PLEKHA8P1	51054	bcgsc.ca	37	12	45567239	45567239	+	RNA	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PLEKHA8P1	.	.	.	.	.	.	169	6	142	1	.	226
PLEKHD1	400224	bcgsc.ca	37	14	69991033	69991033	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PLEKHD1	NM_001161498	exon8	c.A738G	p.T246T	.	.	61	4	34	0	.	68
PLEKHG2	64857	bcgsc.ca	37	19	39915892	39915892	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PLEKHG2	NM_022835	exon19	c.T4119C	p.L1373L	.	.	67	4	71	0	.	274
PMCH	5367	bcgsc.ca	37	12	102591412	102591412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PMCH	NM_002674	exon1	c.A137G	p.K46R	.	.	73	4	148	1	.	90
PMVK	10654	hgsc.bcm.edu;bcgsc.ca	37	1	154904884	154904884	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PMVK	NM_006556	exon2	c.G103C	p.A35P	.	.	259	14	179	0	.	115
POC1B-GALNT4	100528030	bcgsc.ca	37	12	89918980	89918980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001199782	exon2	c.A277G	p.R93G	.	.	90	4	79	1	.	.
PPARD	5467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35378867	35378867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPARD	NM_001171818	exon4	c.G3T	p.M1I	.	.	129	38	81	0	.	187
PPP1R12C	54776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55606963	55606963	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP1R12C	NM_017607	exon10	c.A1236G	p.E412E	.	.	54	18	25	0	.	227
PPP2R4	5524	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131909703	131909703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP2R4	NM_178001	exon11	c.T1037C	p.F346S	.	.	87	45	40	1	.	660
PPP2R4	5524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131909700	131909700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP2R4	NM_178001	exon11	c.A1034G	p.K345R	.	.	88	44	43	0	.	660
PRB3	5544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11420654	11420654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PRB3	NM_006249	exon3	c.C529A	p.P177T	.	.	519	208	235	3	.	1
PRCC	5546	bcgsc.ca	37	1	156756535	156756535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PRCC	NM_005973	exon3	c.T652C	p.S218P	.	.	209	9	100	5	.	514
PRDM14	63978	bcgsc.ca	37	8	70978582	70978582	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PRDM14	NM_024504	exon5	c.T1071C	p.H357H	.	.	148	5	120	0	.	93
PRDM16	63976	bcgsc.ca	37	1	3313087	3313087	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PRDM16	NM_022114	exon5	c.A606G	p.P202P	.	.	64	4	63	0	.	660
PREPL	9581	bcgsc.ca	37	2	44549002	44549002	+	Silent	SNP	A	A	G	rs189954086		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PREPL	NM_001171603	exon14	c.T2058C	p.P686P	.	.	205	8	165	0	A|0.999;G|0.001	91
PRMT8	56341	bcgsc.ca	37	12	3701456	3701456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PRMT8	NM_019854	exon9	c.A1039G	p.T347A	.	.	63	6	45	1	.	94
PROX1	5629	bcgsc.ca	37	1	214170113	214170113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PROX1	NM_001270616	exon2	c.T235C	p.S79P	.	.	131	5	102	1	.	654
PRRC2B	84726	bcgsc.ca	37	9	134350754	134350754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PRRC2B	NM_013318	exon15	c.C3238T	p.P1080S	.	.	76	4	35	0	.	24
PSMD9	5715	bcgsc.ca	37	12	122337734	122337734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PSMD9	NM_002813	exon3	c.T436C	p.S146P	.	.	182	20	86	6	.	90
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71512812	71512812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTGER3	NM_001126044	exon1	c.C449T	p.A150V	.	.	51	24	24	0	.	660
PTPN5	84867	mdanderson.org	37	11	18751279	18751279	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTPN5	NM_032781	exon13	c.G1416A	p.L472L	.	.	50	15	39	1	.	229
PTPRF	5792	bcgsc.ca	37	1	44054601	44054601	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTPRF	NM_130440	exon8	c.T879C	p.S293S	.	.	166	5	132	0	.	232
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55716907	55716907	+	Missense_Mutation	SNP	C	C	A	rs144055741	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTPRH	NM_002842	exon4	c.G406T	p.A136S	.	.	396	156	255	0	C|1.000;T|0.000	138
PTPRQ	374462	bcgsc.ca	37	12	81007453	81007453	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001145026	exon26	c.T4485C	p.P1495P	.	.	97	4	177	0	.	.
RAC2	5880	bcgsc.ca	37	22	37627970	37627970	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RAC2	NM_002872	exon5	c.288+2T>C	.	.	.	86	4	48	0	.	723
RAD21	5885	bcgsc.ca	37	8	117874175	117874175	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RAD21	NM_006265	exon4	c.G279A	p.V93V	.	.	110	6	110	0	.	227
RAD51B	5890	bcgsc.ca	37	14	68353863	68353863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RAD51B	NM_133509	exon7	c.A698G	p.K233R	.	.	242	6	337	0	.	660
RALBP1	10928	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	9535918	9535918	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RALBP1	NM_006788	exon10	c.A1951T	p.K651X	.	.	153	52	75	1	.	522
RALGPS2	55103	bcgsc.ca	37	1	178863063	178863063	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RALGPS2	NM_152663	exon16	c.A1335G	p.E445E	.	.	161	6	157	0	.	226
RARA	5914	bcgsc.ca	37	17	38510578	38510578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RARA	NM_000964	exon7	c.A832G	p.T278A	.	.	271	9	149	1	.	1083
RBM26	64062	bcgsc.ca	37	13	79945983	79945983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RBM26	NM_022118	exon4	c.A410G	p.E137G	.	.	97	5	135	0	.	91
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114425456	114425456	+	Silent	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001145346	exon1	c.A1452T	p.G484G	.	.	62	13	33	0	.	.
RCOR1	23186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103174914	103174914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RCOR1	NM_015156	exon6	c.A773G	p.E258G	.	.	95	29	83	1	.	91
RGS20	8601	bcgsc.ca	37	8	54866835	54866835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RGS20	NM_170587	exon5	c.T943C	p.Y315H	.	.	103	5	94	0	.	227
RHOT2	89941	bcgsc.ca	37	16	719551	719551	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RHOT2	NM_138769	exon5	c.223-2A>G	.	.	.	67	4	63	1	.	91
RIBC1	158787	bcgsc.ca	37	X	53457866	53457866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RIBC1	NM_001031745	exon8	c.T1070C	p.L357P	.	.	126	6	105	0	.	130
RIC3	79608	bcgsc.ca	37	11	8148325	8148325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RIC3	NM_001206671	exon5	c.A551G	p.E184G	.	.	205	6	179	1	.	155
RNF125	54941	broad.mit.edu	37	18	29625687	29625687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RNF125	NM_017831	exon4	c.A496G	p.R166G	.	.	476	9	336	2	.	226
RNF182	221687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13977395	13977395	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RNF182	NM_001165032	exon4	c.T45C	p.S15S	.	.	193	85	113	0	.	586
RNF187	149603	bcgsc.ca	37	1	228680860	228680860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RNF187	NM_001010858	exon3	c.A590G	p.E197G	.	.	191	6	106	1	.	68
RNF31	55072	bcgsc.ca	37	14	24620587	24620587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RNF31	NM_017999	exon9	c.A1736G	p.K579R	.	.	174	6	148	0	.	90
RPL21P44	402176	mdanderson.org	37	4	54852962	54852962	+	RNA	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RPL21P44	.	.	.	.	.	.	69	35	57	0	.	492
RSPRY1	89970	bcgsc.ca	37	16	57264633	57264633	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RSPRY1	NM_133368	exon12	c.A1284G	p.V428V	.	.	54	4	78	0	.	91
RXFP2	122042	bcgsc.ca	37	13	32371536	32371536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RXFP2	NM_130806	exon17	c.T1985C	p.L662P	.	.	282	7	369	3	.	90
RXFP3	51289	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	33937817	33937817	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RXFP3	NM_016568	exon1	c.C972A	p.V324V	.	.	170	102	58	2	.	91
SAMD9L	219285	broad.mit.edu	37	7	92761771	92761771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SAMD9L	NM_152703	exon5	c.A3514G	p.S1172G	.	.	889	7	816	1	.	94
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148867236	148867236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SASH1	NM_015278	exon19	c.T3434A	p.M1145K	.	.	104	51	57	0	.	90
SBNO1	55206	bcgsc.ca	37	12	123812510	123812510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SBNO1	NM_001167856	exon10	c.A1361G	p.K454R	.	.	209	6	248	0	.	292
SCCPDH	51097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246923373	246923373	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SCCPDH	NM_016002	exon8	c.A928T	p.I310L	.	.	934	323	854	1	.	91
SCD5	79966	bcgsc.ca	37	4	83601931	83601931	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SCD5	NM_024906	exon3	c.T498C	p.D166D	.	.	63	4	76	0	.	91
SDS	10993	bcgsc.ca	37	12	113836941	113836941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SDS	NM_006843	exon3	c.T169C	p.C57R	.	.	184	6	157	2	.	91
SEC24A	10802	bcgsc.ca	37	5	134011751	134011751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEC24A	NM_001252231	exon7	c.A1190G	p.Q397R	.	.	256	7	316	1	.	68
SEMA3C	10512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80432006	80432006	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEMA3C	NM_006379	exon9	c.C891A	p.G297G	.	.	173	62	148	1	.	515
SEMA6A	57556	bcgsc.ca	37	5	115782339	115782339	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEMA6A	NM_020796	exon19	c.A3063G	p.T1021T	.	.	77	4	109	0	.	92
SEPT2	4735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242275425	242275425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEPT2	NM_001008491	exon6	c.A253G	p.T85A	.	.	200	77	153	1	.	68
SGK223	0	bcgsc.ca	37	8	8185462	8185462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001080826	exon4	c.A2830G	p.S944G	.	.	64	4	51	0	.	.
SGMS2	166929	bcgsc.ca	37	4	108816739	108816739	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SGMS2	NM_001136257	exon2	c.A30G	p.E10E	.	.	145	5	259	2	.	226
SH3TC2	79628	bcgsc.ca	37	5	148424126	148424126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SH3TC2	NM_024577	exon4	c.A355G	p.I119V	.	.	161	6	128	0	.	92
SHPRH	257218	bcgsc.ca	37	6	146261934	146261934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SHPRH	NM_173082	exon11	c.G2494A	p.A832T	.	.	174	6	95	0	.	92
SHROOM4	57477	bcgsc.ca	37	X	50378319	50378319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SHROOM4	NM_020717	exon4	c.T754C	p.S252P	.	.	91	5	57	0	.	131
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3669214	3669214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SIGLEC1	NM_023068	exon21	c.T5123A	p.L1708Q	.	.	107	44	81	0	.	167
SIRT2	22933	bcgsc.ca	37	19	39369812	39369812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SIRT2	NM_012237	exon16	c.A1153G	p.R385G	.	.	179	6	176	1	.	226
SKIL	6498	bcgsc.ca	37	3	170078530	170078530	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SKIL	NM_001248008	exon1	c.T411C	p.P137P	.	.	304	7	259	2	.	228
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36684073	36684073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC1A3	NM_004172	exon9	c.C1397T	p.T466M	.	.	383	87	173	0	.	90
SLC22A11	55867	bcgsc.ca	37	11	64336148	64336148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC22A11	NM_018484	exon8	c.A1280G	p.Q427R	.	.	338	10	226	1	.	91
SLC22A18	5002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2939298	2939298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC22A18	NM_002555	exon7	c.G736T	p.V246L	.	.	151	46	105	1	.	92
SLC35B4	84912	bcgsc.ca	37	7	133984315	133984315	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC35B4	NM_032826	exon8	c.T633C	p.A211A	.	.	87	4	62	0	.	91
SLC35E1	79939	bcgsc.ca	37	19	16682336	16682336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC35E1	NM_024881	exon2	c.A479G	p.K160R	.	.	70	4	42	0	.	91
SLC47A1	55244	broad.mit.edu	37	17	19449767	19449767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC47A1	NM_018242	exon3	c.T257C	p.V86A	.	.	808	9	694	0	.	90
SLC6A20	54716	bcgsc.ca	37	3	45817455	45817455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC6A20	NM_022405	exon4	c.C380T	p.P127L	.	.	87	4	86	0	.	92
SLC9A5	6553	bcgsc.ca	37	16	67304788	67304788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC9A5	NM_004594	exon16	c.C2366T	p.T789M	.	.	79	5	97	0	.	92
SLCO2A1	6578	bcgsc.ca	37	3	133653604	133653604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLCO2A1	NM_005630	exon14	c.A1885G	p.K629E	.	.	92	6	52	1	.	90
SLFN11	91607	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33690385	33690385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLFN11	NM_152270	exon2	c.G442T	p.A148S	.	.	142	42	133	2	.	159
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168127670	168127670	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLIT3	NM_001271946	exon27	c.T2880C	p.T960T	.	.	176	60	153	1	.	95
SLMAP	7871	bcgsc.ca	37	3	57898238	57898238	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLMAP	NM_007159	exon17	c.G1728A	p.K576K	.	.	79	4	79	0	.	90
SMAD2	4087	bcgsc.ca	37	18	45374861	45374861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SMAD2	NM_005901	exon8	c.A982G	p.T328A	.	.	184	6	163	0	.	1333
SMC1A	8243	bcgsc.ca	37	X	53432299	53432299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SMC1A	NM_006306	exon12	c.T1936C	p.F646L	.	.	110	5	49	0	.	232
SMCO2	0	broad.mit.edu	37	12	27648658	27648658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001145010	exon8	c.T703C	p.Y235H	.	.	324	6	271	1	.	.
SMG8	55181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57288227	57288227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SMG8	NM_018149	exon1	c.A815G	p.N272S	.	.	126	74	67	1	.	93
SNRPB2	6629	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16717950	16717950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SNRPB2	NM_003092	exon4	c.G282A	p.M94I	.	.	630	224	546	3	.	153
SP4	6671	bcgsc.ca	37	7	21469274	21469274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SP4	NM_003112	exon3	c.A491G	p.Q164R	.	.	146	5	123	0	.	95
SPATS2	65244	bcgsc.ca	37	12	49884502	49884502	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SPATS2	NM_023071	exon6	c.A252G	p.T84T	.	.	86	5	83	0	.	135
SPIC	121599	bcgsc.ca	37	12	101876611	101876611	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SPIC	.	.	.	.	.	.	178	6	218	0	.	227
SPOCK1	6695	bcgsc.ca	37	5	136324257	136324257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SPOCK1	NM_004598	exon8	c.A782G	p.D261G	.	.	177	6	189	0	.	91
SPTA1	6708	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158655024	158655024	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SPTA1	NM_003126	exon2	c.T138C	p.G46G	.	.	215	96	227	4	.	142
SRP54	6729	bcgsc.ca	37	14	35497317	35497317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SRP54	NM_003136	exon15	c.A1351G	p.S451G	.	.	174	7	148	0	.	227
SRRM1	10250	broad.mit.edu	37	1	24993386	24993386	+	Missense_Mutation	SNP	G	G	T	rs78787676	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SRRM1	NM_005839	exon13	c.G1709T	p.R570L	.	.	251	8	147	1	G|0.999;A|0.001	93
SRRM2	23524	bcgsc.ca	37	16	2812710	2812710	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SRRM2	NM_016333	exon11	c.T2181C	p.S727S	.	.	115	6	80	0	.	93
ST13	6767	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41223190	41223190	+	Missense_Mutation	SNP	C	C	A	rs710193	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST13	NM_003932	exon11	c.G891T	p.M297I	.	.	49	20	39	0	C|0.941;T|0.059	226
ST6GALNAC1	55808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74625419	74625419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST6GALNAC1	NM_018414	exon2	c.G506A	p.G169D	.	.	670	201	345	2	.	90
ST6GALNAC6	30815	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130658539	130658539	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST6GALNAC6	NM_013443	exon3	c.A99G	p.R33R	.	.	426	120	264	3	.	90
STAT2	6773	bcgsc.ca	37	12	56743894	56743894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STAT2	NM_005419	exon13	c.A1196G	p.D399G	.	.	121	5	98	1	.	847
STIM2	57620	bcgsc.ca	37	4	26921217	26921217	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STIM2	NM_001169118	exon2	c.T243C	p.D81D	.	.	190	6	224	0	.	91
STRIP2	57464	bcgsc.ca	37	7	129104578	129104578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_020704	exon16	c.A1775G	p.Q592R	.	.	112	5	82	0	.	.
STXBP3	6814	bcgsc.ca	37	1	109350072	109350072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon18	c.T1585C	p.S529P	.	.	244	7	189	2	.	93
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109340799	109340799	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon16	c.G1389T	p.R463R	.	.	598	245	536	1	.	93
STXBP3	6814	ucsc.edu;bcgsc.ca	37	1	109340798	109340798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon16	c.G1388T	p.R463L	.	.	600	246	533	2	.	93
STYXL1	51657	bcgsc.ca	37	7	75630236	75630236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STYXL1	NM_016086	exon8	c.T782C	p.L261P	.	.	94	6	80	0	.	278
SUCLA2	8803	bcgsc.ca	37	13	48542746	48542746	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SUCLA2	NM_003850	exon6	c.A786G	p.E262E	.	.	86	4	123	1	.	226
SULT2B1	6820	ucsc.edu;bcgsc.ca	37	19	49094943	49094943	+	Missense_Mutation	SNP	G	G	T	rs149312079	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SULT2B1	NM_177973	exon4	c.G501T	p.K167N	.	.	52	6	45	0	G|0.998;A|0.002	91
SYCP1	6847	bcgsc.ca	37	1	115487016	115487016	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYCP1	NM_003176	exon24	c.A1983G	p.T661T	.	.	377	8	472	1	.	91
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58444857	58444857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYCP2	NM_014258	exon35	c.3737delG	p.R1246fs	.	.	196	70	280	0	.	525
SYNE2	23224	bcgsc.ca	37	14	64641705	64641705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYNE2	NM_182914	exon95	c.T17279C	p.L5760P	.	.	85	4	78	0	.	164
SYNPO2L	79933	bcgsc.ca	37	10	75413384	75413384	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYNPO2L	NM_001114133	exon3	c.T285C	p.S95S	.	.	45	4	29	0	.	91
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	40854035	40854035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYT4	NM_020783	exon2	c.A359T	p.N120I	.	.	329	105	207	0	.	132
SYT6	148281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114646254	114646254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYT6	NM_205848	exon4	c.C906A	p.N302K	.	.	83	39	76	0	.	94
SZT2	23334	bcgsc.ca	37	1	43891749	43891749	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SZT2	NM_015284	exon21	c.T2970C	p.P990P	.	.	162	6	125	1	.	144
SZT2	23334	bcgsc.ca	37	1	43892781	43892781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SZT2	NM_015284	exon23	c.T3193C	p.W1065R	.	.	230	7	149	0	.	144
TAB2	23118	bcgsc.ca	37	6	149699478	149699478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TAB2	NM_015093	exon5	c.T427C	p.S143P	.	.	208	7	134	0	.	227
TAB3	257397	bcgsc.ca	37	X	30870934	30870934	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TAB3	NM_152787	exon7	c.A1671G	p.R557R	.	.	99	4	90	0	.	131
TAS1R1	80835	bcgsc.ca	37	1	6635347	6635347	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TAS1R1	NM_138697	exon3	c.T1155C	p.S385S	.	.	105	5	119	0	.	516
TBC1D16	125058	bcgsc.ca	37	17	77924299	77924299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TBC1D16	NM_019020	exon6	c.G1168A	p.E390K	.	.	116	5	52	0	.	90
TBPL1	9519	bcgsc.ca	37	6	134304014	134304014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TBPL1	NM_004865	exon4	c.T278C	p.F93S	.	.	311	7	231	2	.	90
TBX19	9095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168262484	168262484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TBX19	NM_005149	exon3	c.T571C	p.F191L	.	.	126	52	67	0	.	90
TCEB3	6924	bcgsc.ca	37	1	24077593	24077593	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TCEB3	NM_003198	exon4	c.T576C	p.S192S	.	.	276	9	232	0	.	91
TCF21	6943	broad.mit.edu	37	6	134210576	134210576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TCF21	NM_003206	exon1	c.A41G	p.E14G	.	.	167	6	75	1	.	90
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179603595	179603595	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TDRD5	NM_173533	exon8	c.A1130T	p.Q377L	.	.	184	73	183	0	.	94
TENM1	10178	bcgsc.ca	37	X	123785914	123785914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	ODZ1,NS,carcinoma,+1	.	NM_001163278	exon8	c.G1429T	p.D477Y	.	.	105	5	85	0	.	.
TEP1	7011	bcgsc.ca	37	14	20859164	20859164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TEP1	NM_007110	exon14	c.A2189G	p.K730R	.	.	197	6	155	1	.	95
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74327943	74327943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_144993	exon9	c.A3623T	p.Q1208L	.	.	69	27	46	0	.	.
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24727745	24727745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM1	NM_000359	exon8	c.G1294T	p.V432F	.	.	338	108	277	1	.	91
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24730963	24730963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM1	NM_000359	exon3	c.T446C	p.M149T	.	.	253	84	181	1	.	91
TGM2	7052	bcgsc.ca	37	20	36789956	36789956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM2	NM_198951	exon2	c.G56A	p.R19Q	.	.	78	4	49	0	.	155
THAP9	79725	bcgsc.ca	37	4	83839535	83839535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	THAP9	NM_024672	exon5	c.A2170G	p.N724D	.	.	161	5	257	1	.	156
TLE6	79816	bcgsc.ca	37	19	2988103	2988103	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TLE6	NM_001143986	exon11	c.A717G	p.R239R	.	.	162	5	111	0	.	91
TLR7	51284	bcgsc.ca	37	X	12904598	12904598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TLR7	NM_016562	exon3	c.A971G	p.N324S	.	.	106	5	89	0	.	564
TMEM145	284339	bcgsc.ca	37	19	42819382	42819382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM145	NM_173633	exon7	c.T548C	p.L183P	.	.	257	7	346	5	.	90
TMEM170A	124491	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75485578	75485578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM170A	NM_145254	exon2	c.G293A	p.G98E	.	.	67	37	88	0	.	68
TMEM206	55248	bcgsc.ca	37	1	212551016	212551016	+	Missense_Mutation	SNP	T	T	C	rs183937701		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM206	NM_001198862	exon7	c.A854G	p.E285G	.	.	81	4	66	2	T|0.999;C|0.000	153
TMEM255A	55026	bcgsc.ca	37	X	119402104	119402104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_017938	exon9	c.T886C	p.F296L	.	.	170	5	150	1	.	.
TMEM59L	25789	broad.mit.edu;mdanderson.org	37	19	18731265	18731265	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM59L	NM_012109	exon8	c.G948A	p.W316X	.	.	41	9	30	0	.	94
TNFRSF19	55504	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24243206	24243206	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TNFRSF19	NM_018647	exon9	c.C1215A	p.V405V	.	.	145	37	65	1	.	228
TOP2B	7155	bcgsc.ca	37	3	25685229	25685229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TOP2B	NM_001068	exon3	c.T272C	p.V91A	.	.	83	5	128	0	.	273
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577107	7577107	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	TP53,NS,carcinoma,-2	TP53	NM_000546	exon8	c.T831A	p.C277X	.	.	65	47	87	0	.	70225
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65751568	65751568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TPST1	NM_003596	exon3	c.A916G	p.I306V	.	.	147	68	139	0	.	90
TRAF3IP1	26146	broad.mit.edu	37	2	239261552	239261552	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TRAF3IP1	NM_015650	exon13	c.A1536G	p.E512E	.	.	334	7	301	1	.	228
TRAIP	10293	bcgsc.ca	37	3	49881303	49881303	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TRAIP	NM_005879	exon5	c.A339G	p.E113E	.	.	145	5	133	0	.	849
TRAM1L1	133022	bcgsc.ca	37	4	118006468	118006468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TRAM1L1	NM_152402	exon1	c.T82C	p.S28P	.	.	166	6	101	0	.	90
TRIM3	10612	bcgsc.ca	37	11	6478647	6478647	+	Missense_Mutation	SNP	T	T	C	rs151281368		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TRIM3	NM_001248006	exon5	c.A575G	p.E192G	.	.	81	4	74	0	T|1.000;C|0.000	714
TRPC5	7224	bcgsc.ca	37	X	111078226	111078226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TRPC5	NM_012471	exon7	c.A1819G	p.T607A	.	.	115	5	116	0	.	130
TRPM7	54822	bcgsc.ca	37	15	50885826	50885826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TRPM7	NM_017672	exon25	c.T3596C	p.V1199A	.	.	194	6	148	0	.	392
TTC21A	199223	bcgsc.ca	37	3	39159658	39159658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTC21A	NM_145755	exon7	c.A815G	p.K272R	.	.	78	4	97	0	.	91
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	39171742	39171742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTC21A	NM_145755	exon17	c.G2233T	p.E745X	.	.	63	42	77	0	.	91
TTC24	164118	bcgsc.ca	37	1	156552222	156552222	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTC24	NM_001105669	exon3	c.A906G	p.L302L	.	.	54	4	45	0	.	46
TTC3P1	286495	bcgsc.ca	37	X	74961503	74961503	+	RNA	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTC3P1	.	.	.	.	.	.	192	7	180	0	.	63
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179419703	179419703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTN	NM_001267550	exon331	c.C88483T	p.L29495F	.	.	198	79	150	0	.	636
TTYH1	57348	bcgsc.ca	37	19	54942284	54942284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTYH1	NM_020659	exon10	c.T1040C	p.L347P	.	.	79	4	77	0	.	90
TYW1	55253	bcgsc.ca	37	7	66582590	66582590	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TYW1	NM_018264	exon13	c.A1683G	p.K561K	.	.	153	5	185	0	.	91
UBA7	7318	bcgsc.ca	37	3	49849917	49849917	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	UBA7	NM_003335	exon6	c.A618G	p.G206G	.	.	91	7	122	0	.	228
UBE2M	9040	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	59067482	59067482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	UBE2M	NM_003969	exon6	c.A526C	p.T176P	.	.	57	20	41	4	.	228
UBN1	29855	bcgsc.ca	37	16	4924580	4924580	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	UBN1	NM_001079514	exon15	c.T2169C	p.P723P	.	.	119	5	106	0	.	92
UBR4	23352	bcgsc.ca	37	1	19499722	19499722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	UBR4	NM_020765	exon24	c.T3244C	p.S1082P	.	.	225	7	185	0	.	612
ULK1	8408	bcgsc.ca	37	12	132399006	132399006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ULK1	NM_003565	exon16	c.C1357A	p.Q453K	.	.	68	4	32	0	.	758
ULK4	54986	bcgsc.ca	37	3	41953147	41953147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ULK4	NM_017886	exon10	c.A901G	p.N301D	.	.	63	4	51	0	.	297
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94088075	94088075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_020818	exon30	c.A3965G	p.Q1322R	.	.	182	63	149	0	.	.
USP2	9099	bcgsc.ca	37	11	119230320	119230320	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	USP2	NM_004205	exon4	c.A876G	p.R292R	.	.	78	5	88	0	.	661
USP4	7375	broad.mit.edu	37	3	49323582	49323582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	USP4	NM_003363	exon16	c.A2149G	p.T717A	.	.	336	9	475	1	.	660
VDR	7421	bcgsc.ca	37	12	48240177	48240177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	VDR	NM_001017536	exon9	c.A1115G	p.K372R	.	.	48	4	42	0	.	188
VENTX	27287	bcgsc.ca	37	10	135053485	135053485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	VENTX	NM_014468	exon3	c.A452G	p.Q151R	.	.	186	6	145	1	.	90
VKORC1	79001	bcgsc.ca	37	16	31106908	31106908	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	VKORC1	.	.	.	.	.	.	220	7	154	4	.	90
VPS51	738	bcgsc.ca	37	11	64864508	64864508	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_013265	exon2	c.T267C	p.S89S	.	.	54	4	51	1	.	.
VWA5B1	127731	bcgsc.ca	37	1	20649967	20649967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001039500	exon8	c.T1085C	p.F362S	.	.	73	4	50	0	.	.
VWDE	221806	bcgsc.ca	37	7	12382728	12382728	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	VWDE	NM_001135924	exon22	c.A4155G	p.V1385V	.	.	143	5	108	1	.	68
WDR89	112840	bcgsc.ca	37	14	64066561	64066561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	WDR89	NM_080666	exon3	c.A100G	p.T34A	.	.	220	7	209	2	.	90
XPO5	57510	bcgsc.ca	37	6	43492880	43492880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	XPO5	NM_020750	exon29	c.A3139G	p.T1047A	.	.	150	5	75	0	.	271
YWHAG	7532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75959524	75959524	+	Silent	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	YWHAG,NS,carcinoma,-1	YWHAG	NM_012479	exon2	c.G114C	p.S38S	.	.	56	27	36	0	.	523
ZBTB41	360023	bcgsc.ca	37	1	197128627	197128627	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZBTB41	NM_194314	exon10	c.T2592C	p.P864P	.	.	227	8	241	2	.	92
ZC3H18	124245	ucsc.edu	37	16	88696915	88696915	+	Silent	SNP	T	T	C	rs201033811	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZC3H18	NM_144604	exon17	c.T2589C	p.G863G	.	.	42	4	38	0	T|0.999;G|0.000	69
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	41739420	41739420	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZC3H7B	NM_017590	exon13	c.C1299T	p.G433G	.	.	108	36	50	0	.	90
ZFHX4	79776	bcgsc.ca	37	8	77766007	77766007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZFHX4	NM_024721	exon10	c.A6850G	p.S2284G	.	.	73	4	74	0	.	98
ZFYVE26	23503	bcgsc.ca	37	14	68236311	68236311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZFYVE26	NM_015346	exon29	c.A5621G	p.D1874G	.	.	70	4	78	1	.	162
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	C	G	rs148365070	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZIC4	NM_001168378	exon2	c.G200C	p.R67P	.	.	191	65	181	0	C|0.999;T|0.001	91
ZMYM6	9204	bcgsc.ca	37	1	35453509	35453509	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZMYM6	NM_007167	exon16	c.A3174G	p.G1058G	.	.	160	5	173	0	.	93
ZMYND10	51364	bcgsc.ca	37	3	50379854	50379854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZMYND10	NM_015896	exon8	c.A847G	p.S283G	.	.	99	6	110	0	.	279
ZNF141	7700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	367384	367397	+	Frame_Shift_Del	DEL	AAAAATTCATACTG	AAAAATTCATACTG	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	AAAAATTCATACTG	AAAAATTCATACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF141	NM_003441	exon4	c.1158_1171del	p.386_391del	.	.	130	0	112	0	.	90
ZNF182	7569	bcgsc.ca	37	X	47835804	47835804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF182	NM_006962	exon7	c.A1682G	p.Q561R	.	.	160	5	149	0	.	132
ZNF184	7738	bcgsc.ca	37	6	27424684	27424684	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF184	NM_007149	exon5	c.A219G	p.K73K	.	.	211	6	153	1	.	91
ZNF185	7739	bcgsc.ca	37	X	152105039	152105039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF185	NM_001178106	exon15	c.C1196A	p.P399H	.	.	66	4	46	0	.	133
ZNF226	7769	bcgsc.ca	37	19	44681478	44681478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001032372	exon6	c.T2063C	p.M688T	.	.	86	4	121	0	.	.
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44514563	44514563	+	Silent	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF230	NM_006300	exon5	c.C372G	p.S124S	.	.	134	95	193	0	.	90
ZNF23	7571	bcgsc.ca	37	16	71482028	71482028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF23	NM_145911	exon6	c.C1900T	p.H634Y	.	.	159	5	287	0	.	90
ZNF264	9422	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57723567	57723567	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF264	NM_003417	exon4	c.G1102T	p.E368X	.	.	192	77	172	1	.	92
ZNF267	10308	bcgsc.ca	37	16	31895817	31895817	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF267	NM_003414	exon2	c.4-2A>G	.	.	.	85	5	56	0	.	138
ZNF333	84449	bcgsc.ca	37	19	14829601	14829601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF333	NM_032433	exon12	c.A1462G	p.R488G	.	.	135	5	92	0	.	92
ZNF395	55893	bcgsc.ca	37	8	28217293	28217293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF395	NM_018660	exon3	c.C289T	p.H97Y	.	.	71	4	66	0	.	90
ZNF469	84627	ucsc.edu;bcgsc.ca	37	16	88501177	88501177	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001127464	exon2	c.T7215C	p.T2405T	.	.	52	6	86	1	.	.
ZNF549	256051	bcgsc.ca	37	19	58049496	58049496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF549	NM_001199295	exon4	c.A1124G	p.D375G	.	.	113	5	75	0	.	91
ZNF569	148266	bcgsc.ca	37	19	37917237	37917237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF569	NM_152484	exon4	c.A59G	p.E20G	.	.	188	7	244	7	.	154
ZNF599	148103	bcgsc.ca	37	19	35250864	35250864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF599	NM_001007248	exon4	c.A842G	p.K281R	.	.	140	5	198	1	.	92
ZNF618	114991	bcgsc.ca	37	9	116731436	116731436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF618	NM_133374	exon2	c.A73G	p.S25G	.	.	88	5	56	0	.	22
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927768	23927768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_138286	exon4	c.T584A	p.V195E	.	.	202	77	280	0	.	.
ZNF766	90321	bcgsc.ca	37	19	52794081	52794081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001010851	exon4	c.T1037C	p.L346P	.	.	87	4	80	0	.	.
ZNF790	388536	bcgsc.ca	37	19	37309348	37309348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF790	NM_206894	exon5	c.T1898C	p.I633T	.	.	77	4	121	0	.	92
ZNFX1	57169	broad.mit.edu;bcgsc.ca	37	20	47887780	47887780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNFX1	NM_021035	exon3	c.T569C	p.V190A	.	.	158	6	125	0	.	24
ZSWIM1	90204	bcgsc.ca	37	20	44511454	44511454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZSWIM1	NM_080603	exon2	c.T223C	p.F75L	.	.	270	7	176	0	.	91
ZW10	9183	bcgsc.ca	37	11	113628451	113628451	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZW10	NM_004724	exon7	c.T858C	p.Y286Y	.	.	92	4	133	0	.	228
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36050192	36050193	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.A28E	.	.	.	.	.	.	.	
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158262498	158262499	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.A643N	.	.	.	.	.	.	.	
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139694674	139694675	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.P136Q	.	.	.	.	.	.	.	
