Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A4GALT	53947	bcgsc.ca	37	22	43089857	43089857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	A4GALT	NM_017436	exon3	c.T101C	p.V34A	.	.	75	4	37	0	.	90
AASS	10157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	121756964	121756964	+	Silent	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AASS	NM_005763	exon7	c.C735G	p.P245P	.	.	118	19	94	0	.	92
ABCA11P	79963	bcgsc.ca	37	4	466434	466434	+	RNA	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	437	30	274	6	.	.
ABCA6	23460	bcgsc.ca	37	17	67109811	67109811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ABCA6	NM_080284	exon14	c.A1850G	p.E617G	.	.	169	7	432	2	.	159
ABCA7	10347	bcgsc.ca	37	19	1050948	1050948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ABCA7	NM_019112	exon19	c.A2581G	p.S861G	.	.	168	7	80	1	.	98
ABCA9	10350	bcgsc.ca	37	17	67045618	67045618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ABCA9	NM_080283	exon3	c.C110T	p.S37L	.	.	63	4	126	1	.	95
ABCB5	340273	bcgsc.ca	37	7	20762773	20762773	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ABCB5	NM_001163941	exon21	c.A2556G	p.G852G	.	.	99	4	70	2	.	158
ABCC1	4363	bcgsc.ca	37	16	16165527	16165527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ABCC1	NM_004996	exon14	c.T1853C	p.I618T	.	.	158	5	172	1	.	94
ABCC4	10257	bcgsc.ca	37	13	95735431	95735431	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ABCC4	NM_005845	exon21	c.G2649A	p.L883L	.	.	84	4	121	0	.	515
ACER3	55331	bcgsc.ca	37	11	76727772	76727772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ACER3	NM_018367	exon9	c.C653T	p.A218V	.	.	124	5	195	0	.	90
ACSS3	79611	bcgsc.ca	37	12	81528756	81528756	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ACSS3	NM_024560	exon3	c.A618G	p.E206E	.	.	76	4	104	0	.	71
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9667941	9667941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM17	NM_003183	exon5	c.G593A	p.G198E	.	.	92	28	155	0	.	659
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39537556	39537556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM18	NM_014237	exon16	c.G1632T	p.K544N	.	.	154	69	138	2	.	228
ADAM19	8728	ucsc.edu	37	5	156923944	156923944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM19	NM_033274	exon14	c.T1552C	p.C518R	.	.	41	5	27	1	.	294
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43833853	43833853	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAMTS20	NM_025003	exon17	c.G2310T	p.G770G	.	.	38	16	45	0	.	795
ADCY8	114	bcgsc.ca	37	8	131880111	131880111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADCY8	NM_001115	exon9	c.A2191G	p.S731G	.	.	78	4	65	0	.	157
ADNP	23394	bcgsc.ca	37	20	49510295	49510295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADNP	NM_015339	exon5	c.T956C	p.V319A	.	.	124	5	62	0	.	92
AHI1	54806	bcgsc.ca	37	6	135784426	135784426	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AHI1	NM_001134832	exon7	c.T768C	p.G256G	.	.	47	4	87	0	.	227
AHNAK2	113146	bcgsc.ca	37	14	105407794	105407794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AHNAK2	NM_138420	exon7	c.T13994C	p.F4665S	.	.	157	5	84	0	.	47
AHNAK	79026	bcgsc.ca	37	11	62285747	62285747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AHNAK	NM_001620	exon5	c.A16142G	p.K5381R	.	.	99	5	97	0	.	109
AKAP6	9472	bcgsc.ca	37	14	33015408	33015408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AKAP6	NM_004274	exon4	c.T1549C	p.S517P	.	.	125	5	120	1	.	733
AKAP9	10142	bcgsc.ca	37	7	91631357	91631357	+	Missense_Mutation	SNP	T	T	C	rs113086549	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AKAP9	NM_005751	exon8	c.T2126C	p.L709P	.	.	94	4	117	1	T|0.500;G|0.500	755
AKAP9	10142	bcgsc.ca	37	7	91645445	91645445	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AKAP9	NM_005751	exon11	c.T3615C	p.T1205T	.	.	82	4	104	0	.	755
AKR1C4	1109	broad.mit.edu	37	10	5242289	5242289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AKR1C4	NM_001818	exon2	c.A230G	p.E77G	.	.	433	7	249	0	.	91
ALG2	85365	hgsc.bcm.edu	37	9	101984010	101984010	+	Missense_Mutation	SNP	G	G	A	rs201959100		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ALG2	NM_033087	exon1	c.C167T	p.P56L	.	.	17	10	1	0	G|0.998;A|0.002	92
ALG6	29929	bcgsc.ca	37	1	63867944	63867944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ALG6	NM_013339	exon4	c.A187G	p.N63D	.	.	95	4	143	0	.	90
ALKBH8	91801	bcgsc.ca	37	11	107431568	107431568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ALKBH8	NM_138775	exon2	c.T52C	p.F18L	.	.	67	4	224	0	.	68
ALPK3	57538	bcgsc.ca	37	15	85411413	85411413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ALPK3	NM_020778	exon14	c.C5450A	p.A1817D	.	.	97	7	58	1	.	337
ANKK1	255239	bcgsc.ca	37	11	113266923	113266923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKK1	NM_178510	exon5	c.A817G	p.K273E	.	.	87	4	53	0	.	628
ANKMY1	51281	bcgsc.ca	37	2	241463745	241463745	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKMY1	NM_016552	exon7	c.A1122G	p.T374T	.	.	109	5	84	0	.	90
ANKRA2	57763	bcgsc.ca	37	5	72851340	72851340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKRA2	NM_023039	exon5	c.A585G	p.I195M	.	.	67	4	76	0	.	90
ANKRD28	23243	bcgsc.ca	37	3	15717470	15717470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKRD28	NM_015199	exon27	c.G2810A	p.G937E	.	.	54	4	38	0	.	135
ANKRD28	23243	bcgsc.ca	37	3	15807798	15807798	+	Silent	SNP	A	A	G	rs187952728		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKRD28	NM_015199	exon3	c.T133C	p.L45L	.	.	86	4	118	0	A|0.999;G|0.000	135
ANKRD29	147463	broad.mit.edu	37	18	21229064	21229064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKRD29	NM_173505	exon2	c.G115A	p.V39M	.	.	276	7	163	0	.	156
ANKRD30BP2	149992	broad.mit.edu	37	21	14417510	14417510	+	RNA	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	561	63	1459	4	.	.
ANKRD35	148741	bcgsc.ca	37	1	145562440	145562440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKRD35	NM_144698	exon10	c.G2128T	p.A710S	.	.	192	6	54	0	.	95
ANKRD36	375248	bcgsc.ca	37	2	97790280	97790280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001164315	exon5	c.G677A	p.R226Q	.	.	122	5	346	0	.	.
ANKRD49	54851	bcgsc.ca	37	11	94231380	94231380	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ANKRD49	NM_017704	exon3	c.T402C	p.V134V	.	.	180	7	163	0	.	90
AOX1	316	bcgsc.ca	37	2	201533483	201533483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AOX1	NM_001159	exon33	c.T3755C	p.L1252S	.	.	134	7	198	0	.	96
APC	324	bcgsc.ca	37	5	112090683	112090683	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	APC	NM_001127510	exon3	c.T96C	p.N32N	.	.	93	4	177	0	.	12026
ARFIP1	27236	bcgsc.ca	37	4	153791950	153791950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARFIP1	NM_001025595	exon4	c.T248C	p.V83A	.	.	59	4	71	0	.	91
ARHGAP23	57636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36622999	36622999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGAP23	NM_001199417	exon7	c.A1075T	p.T359S	.	.	108	44	38	0	.	205
ARHGAP29	9411	bcgsc.ca	37	1	94685865	94685865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGAP29	NM_004815	exon3	c.A289G	p.N97D	.	.	147	5	164	0	.	296
ARHGAP32	9743	bcgsc.ca	37	11	128840092	128840092	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGAP32	NM_001142685	exon22	c.T4974C	p.S1658S	.	.	200	6	154	0	.	231
ARHGAP36	158763	broad.mit.edu	37	X	130217883	130217883	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGAP36	NM_144967	exon4	c.T495C	p.F165F	.	.	273	8	52	0	.	133
ARHGAP42	143872	ucsc.edu;bcgsc.ca	37	11	100792301	100792301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_152432	exon6	c.T563C	p.V188A	.	.	42	4	173	0	.	.
ARHGEF12	23365	bcgsc.ca	37	11	120346146	120346146	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGEF12	NM_015313	exon33	c.A3207G	p.T1069T	.	.	172	6	170	1	.	661
ARHGEF28	64283	bcgsc.ca	37	5	73181728	73181728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001080479	exon25	c.A3109G	p.M1037V	.	.	73	4	114	0	.	.
ARHGEF39	84904	broad.mit.edu	37	9	35662660	35662660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_032818	exon7	c.T752C	p.F251S	.	.	196	6	61	1	.	.
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157502282	157502282	+	Silent	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARID1B	NM_020732	exon12	c.C3315G	p.V1105V	.	.	111	40	40	0	.	154
ARNT2	9915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80767490	80767490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARNT2	NM_014862	exon5	c.T548G	p.L183R	.	.	187	153	111	0	.	175
ASPM	259266	bcgsc.ca	37	1	197099165	197099165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ASPM	NM_001206846	exon8	c.T2509C	p.S837P	.	.	96	4	48	0	.	615
ASRGL1	80150	bcgsc.ca	37	11	62159040	62159040	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ASRGL1	NM_001083926	exon6	c.A657G	p.T219T	.	.	95	4	92	0	.	90
ASTN2	23245	bcgsc.ca	37	9	119739059	119739059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ASTN2	NM_014010	exon7	c.T1444C	p.C482R	.	.	116	6	55	0	.	161
ASXL3	80816	bcgsc.ca	37	18	31224917	31224917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ASXL3	NM_030632	exon3	c.A197G	p.D66G	.	.	51	4	141	0	.	49
ATAD5	79915	bcgsc.ca	37	17	29161846	29161846	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ATAD5	NM_024857	exon2	c.A747G	p.R249R	.	.	237	6	186	0	.	93
ATG16L1	55054	bcgsc.ca	37	2	234172681	234172681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ATG16L1	NM_017974	exon4	c.A359G	p.K120R	.	.	170	5	120	0	.	90
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25953217	25953217	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ATP10A	NM_024490	exon12	c.G2481A	p.L827L	.	.	165	123	96	2	.	139
ATP8B3	148229	broad.mit.edu	37	19	1789611	1789611	+	Missense_Mutation	SNP	C	C	A	rs191598401	by1000genomes	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_138813	exon23	c.G2594T	p.R865L	.	.	46	5	8	0	C|0.991;A|0.009	.
AXL	558	bcgsc.ca	37	19	41748798	41748798	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AXL	NM_021913	exon11	c.T1323C	p.P441P	.	.	255	7	162	0	.	1403
B3GALT1	8708	bcgsc.ca	37	2	168725642	168725642	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	B3GALT1	NM_020981	exon2	c.T93C	p.S31S	.	.	233	8	180	2	.	94
B9D2	80776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41860879	41860879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	B9D2	NM_030578	exon4	c.G254T	p.S85I	.	.	72	43	32	0	.	69
BAG3	9531	bcgsc.ca	37	10	121432075	121432075	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BAG3	NM_004281	exon3	c.T816C	p.G272G	.	.	161	8	64	1	.	229
BAHD1	22893	bcgsc.ca	37	15	40751795	40751795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BAHD1	NM_014952	exon2	c.A1132G	p.S378G	.	.	116	5	56	0	.	90
BAZ1A	11177	ucsc.edu;bcgsc.ca	37	14	35280226	35280226	+	Missense_Mutation	SNP	T	T	C	rs145884653	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BAZ1A	NM_182648	exon5	c.A553G	p.I185V	.	.	30	4	136	0	T|1.000;C|0.000	291
BDP1	55814	bcgsc.ca	37	5	70818269	70818269	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BDP1	NM_018429	exon23	c.A5145G	p.E1715E	.	.	241	7	318	0	.	92
BMP7	655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	55840845	55840845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BMP7	NM_001719	exon1	c.A334T	p.S112C	.	.	177	79	61	0	.	187
BPIFC	254240	bcgsc.ca	37	22	32853330	32853330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_174932	exon1	c.T44C	p.L15P	.	.	153	6	159	0	.	.
BRAT1	221927	hgsc.bcm.edu	37	7	2578371	2578371	+	Missense_Mutation	SNP	G	G	A	rs56727079	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BRAT1	NM_152743	exon14	c.C1798T	p.L600F	.	.	14	7	0	0	G|0.928;A|0.072	229
BRWD1	54014	bcgsc.ca	37	21	40670410	40670410	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BRWD1	NM_001007246	exon5	c.A297G	p.R99R	.	.	256	8	348	0	.	94
BRWD3	254065	bcgsc.ca	37	X	79932387	79932387	+	Silent	SNP	C	C	G	rs146425236	byfrequency;alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BRWD3	NM_153252	exon41	c.G5130C	p.G1710G	.	.	194	11	113	1	C|0.999;A|0.001	134
BTN2A3P	54718	bcgsc.ca	37	6	26431797	26431797	+	RNA	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	178	6	153	0	.	.
C12orf56	115749	bcgsc.ca	37	12	64671516	64671516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C12orf56	NM_001170633	exon9	c.T1378C	p.F460L	.	.	143	6	175	0	.	68
C13orf35	400165	bcgsc.ca	37	13	113333718	113333718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C13orf35	NM_207440	exon2	c.T25C	p.C9R	.	.	93	4	49	0	.	69
C14orf183	196913	ucsc.edu	37	14	50555892	50555892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C14orf183	NM_001014830	exon3	c.A394G	p.R132G	.	.	41	4	33	0	.	90
C17orf107	100130311	bcgsc.ca	37	17	4803817	4803817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001145536	exon3	c.G562A	p.G188R	.	.	79	4	53	0	.	.
C20orf112	140688	bcgsc.ca	37	20	31035607	31035607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C20orf112	NM_001256798	exon11	c.T1835C	p.L612P	.	.	295	14	90	3	.	514
C20orf26	26074	broad.mit.edu;bcgsc.ca	37	20	20150077	20150077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C20orf26	NM_015585	exon13	c.A1358G	p.Y453C	.	.	150	7	117	1	.	94
C21orf91	54149	bcgsc.ca	37	21	19169100	19169100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C21orf91	NM_017447	exon3	c.T463C	p.S155P	.	.	109	5	143	0	.	91
C2	717	bcgsc.ca	37	6	31910747	31910747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C2	NM_000063	exon10	c.A1231G	p.I411V	.	.	131	6	86	0	.	92
C2orf40	84417	bcgsc.ca	37	2	106694314	106694314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C2orf40	NM_032411	exon4	c.T379C	p.S127P	.	.	110	5	87	1	.	90
C2orf42	54980	bcgsc.ca	37	2	70377660	70377660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C2orf42	NM_017880	exon10	c.T1553C	p.F518S	.	.	139	5	101	0	.	90
C5orf20	140947	bcgsc.ca	37	5	134782300	134782300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_130848	exon1	c.T499C	p.S167P	.	.	264	7	134	0	.	.
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37186475	37186475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C5orf42	NM_023073	exon24	c.G4102T	p.A1368S	.	.	567	136	217	0	.	94
C6orf170	221322	bcgsc.ca	37	6	121577318	121577318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C6orf170	NM_152730	exon16	c.T1847C	p.V616A	.	.	199	6	160	0	.	92
C7orf63	79846	bcgsc.ca	37	7	89906632	89906632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C7orf63	NM_001039706	exon11	c.A1139G	p.D380G	.	.	77	4	139	1	.	91
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39306883	39306883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C9	NM_001737	exon9	c.A1252G	p.S418G	.	.	178	47	162	1	.	90
C9orf72	203228	bcgsc.ca	37	9	27561603	27561603	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C9orf72	NM_018325	exon5	c.T645C	p.C215C	.	.	133	5	244	0	.	517
CAB39	51719	bcgsc.ca	37	2	231657938	231657938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CAB39	NM_001130849	exon4	c.A290G	p.D97G	.	.	91	5	203	1	.	226
CABIN1	23523	ucsc.edu;bcgsc.ca	37	22	24479290	24479290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CABIN1	NM_001199281	exon20	c.T2858C	p.F953S	.	.	15	4	43	0	.	94
CACNA1H	8912	bcgsc.ca	37	16	1254107	1254107	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CACNA1H	NM_021098	exon10	c.C2100T	p.C700C	.	.	72	4	44	0	.	67
CACNB2	783	bcgsc.ca	37	10	18816544	18816544	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CACNB2	NM_201596	exon10	c.C972T	p.D324D	.	.	82	4	65	0	.	154
CADM3	57863	broad.mit.edu;bcgsc.ca	37	1	159163663	159163663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CADM3	NM_021189	exon6	c.A626G	p.E209G	.	.	381	9	153	1	.	92
CADPS	8618	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62467411	62467411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CADPS	NM_003716	exon22	c.A3160T	p.I1054L	.	.	203	113	207	1	.	281
CAPN7	23473	bcgsc.ca	37	3	15260044	15260044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CAPN7	NM_014296	exon4	c.A434G	p.D145G	.	.	88	6	76	0	.	91
CAPS	828	broad.mit.edu	37	19	5915260	5915260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CAPS	NM_004058	exon5	c.A497G	p.Y166C	.	.	128	5	55	0	.	90
CARKD	55739	bcgsc.ca	37	13	111274685	111274685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CARKD	NM_018210	exon2	c.A223G	p.R75G	.	.	98	4	78	0	.	116
CASK	8573	bcgsc.ca	37	X	41379699	41379699	+	Missense_Mutation	SNP	A	A	G	rs137852819		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CASK	NM_003688	exon27	c.T2740C	p.W914R	.	.	120	5	60	0	.	616
CASP8	841	bcgsc.ca	37	2	202131281	202131281	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CASP8	NM_001080125	exon2	c.C249T	p.F83F	.	.	96	4	137	0	.	660
CASP8AP2	9994	bcgsc.ca	37	6	90565203	90565203	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CASP8AP2	NM_001137667	exon5	c.T240C	p.Y80Y	.	.	69	4	278	0	.	24
CATSPERB	79820	bcgsc.ca	37	14	92053566	92053566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CATSPERB	NM_024764	exon26	c.A3112G	p.N1038D	.	.	91	4	120	0	.	138
CATSPERB	79820	bcgsc.ca	37	14	92139263	92139263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CATSPERB	NM_024764	exon13	c.C1076T	p.T359I	.	.	73	4	183	1	.	138
CCDC137	339230	bcgsc.ca	37	17	79639531	79639531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC137	NM_199287	exon6	c.A667G	p.R223G	.	.	166	9	66	0	.	69
CCDC171	203238	bcgsc.ca	37	9	15578887	15578887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_173550	exon4	c.A218G	p.E73G	.	.	113	5	64	0	.	.
CCDC28A	25901	bcgsc.ca	37	6	139113886	139113886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC28A	NM_015439	exon6	c.A771G	p.I257M	.	.	71	4	39	0	.	90
CCDC30	728621	bcgsc.ca	37	1	43011103	43011103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC30	NM_001080850	exon4	c.T278C	p.F93S	.	.	130	5	365	2	.	90
CCDC47	57003	broad.mit.edu	37	17	61841474	61841474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC47	NM_020198	exon4	c.T449C	p.I150T	.	.	215	6	124	0	.	90
CCDC66	285331	bcgsc.ca	37	3	56653921	56653921	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC66	NM_001141947	exon17	c.C2752T	p.L918L	.	.	61	4	65	0	.	135
CCDC6	8030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61572436	61572436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC6	NM_005436	exon5	c.A804C	p.E268D	.	.	96	82	153	0	.	686
CCDC88A	55704	bcgsc.ca	37	2	55576681	55576681	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC88A	NM_018084	exon9	c.A855G	p.E285E	.	.	261	8	273	2	.	94
CCDC90B	60492	bcgsc.ca	37	11	82989785	82989785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC90B	NM_021825	exon3	c.T308C	p.V103A	.	.	70	4	137	0	.	90
CCL15	6359	bcgsc.ca	37	17	34324846	34324846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCL15	NM_032965	exon4	c.G299A	p.G100E	.	.	127	6	78	1	.	91
CCNH	902	bcgsc.ca	37	5	86695302	86695302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCNH	NM_001239	exon7	c.A781G	p.K261E	.	.	87	4	112	0	.	441
CCP110	9738	bcgsc.ca	37	16	19559918	19559918	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCP110	NM_001199022	exon14	c.T2982C	p.V994V	.	.	46	4	42	0	.	90
CCT8L2	150160	bcgsc.ca	37	22	17072048	17072048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCT8L2	NM_014406	exon1	c.G1393A	p.A465T	.	.	149	6	152	0	.	69
CD101	9398	bcgsc.ca	37	1	117552480	117552480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CD101	NM_001256109	exon2	c.A52G	p.S18G	.	.	48	4	45	0	.	94
CD99	4267	bcgsc.ca	37	X	2644412	2644412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CD99	NM_002414	exon8	c.A473G	p.N158S	.	.	166	7	59	1	.	40
CDCA5	113130	bcgsc.ca	37	11	64847220	64847220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CDCA5	NM_080668	exon5	c.A283G	p.R95G	.	.	145	5	81	0	.	90
CDH17	1015	bcgsc.ca	37	8	95186414	95186414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CDH17	NM_004063	exon6	c.A499G	p.I167V	.	.	84	4	105	0	.	96
CEBPZ	10153	broad.mit.edu;bcgsc.ca	37	2	37455087	37455087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CEBPZ	NM_005760	exon2	c.A1249G	p.K417E	.	.	417	9	185	0	.	91
CENPE	1062	bcgsc.ca	37	4	104070344	104070344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CENPE	NM_001813	exon27	c.G3618T	p.K1206N	.	.	74	4	218	0	.	277
CENPE	1062	bcgsc.ca	37	4	104115533	104115533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CENPE	NM_001813	exon7	c.A625G	p.M209V	.	.	134	5	312	0	.	277
CENPF	1063	bcgsc.ca	37	1	214830402	214830402	+	Missense_Mutation	SNP	A	A	G	rs149345652		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CENPF	NM_016343	exon18	c.A8612G	p.H2871R	.	.	205	6	146	0	A|1.000;G|0.000	567
CENPH	64946	bcgsc.ca	37	5	68505590	68505590	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CENPH	NM_022909	exon9	c.T708C	p.I236I	.	.	61	4	70	0	.	153
CEP112	201134	bcgsc.ca	37	17	64066041	64066041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CEP112	NM_001199165	exon9	c.G847A	p.V283I	.	.	184	6	425	0	.	90
CEP192	55125	bcgsc.ca	37	18	13001553	13001553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CEP192	NM_032142	exon3	c.A262G	p.R88G	.	.	69	4	50	0	.	27
CEP290	80184	bcgsc.ca	37	12	88449449	88449449	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CEP290	NM_025114	exon50	c.A6864G	p.K2288K	.	.	252	11	486	0	.	96
CERS6	253782	bcgsc.ca	37	2	169404192	169404192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001256126	exon2	c.T257C	p.V86A	.	.	129	6	127	1	.	.
CFTR	1080	bcgsc.ca	37	7	117174386	117174386	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CFTR	NM_000492	exon5	c.T546C	p.S182S	.	.	65	4	128	1	.	518
CFTR	1080	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117292987	117292987	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CFTR	NM_000492	exon24	c.3963+2T>G	.	.	.	130	54	290	2	.	518
CHD5	26038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6181279	6181279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CHD5	NM_015557	exon33	c.G4798T	p.D1600Y	.	.	343	101	153	3	.	719
CHERP	10523	bcgsc.ca	37	19	16632439	16632439	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CHERP	NM_006387	exon12	c.G2007A	p.L669L	.	.	161	5	91	1	.	92
CLASRP	11129	bcgsc.ca	37	19	45565453	45565453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CLASRP	NM_007056	exon11	c.G905T	p.R302L	.	.	193	7	91	0	.	154
CLIC4	25932	bcgsc.ca	37	1	25140695	25140695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CLIC4	NM_013943	exon3	c.T293C	p.V98A	.	.	178	6	137	0	.	226
CLIP1	6249	bcgsc.ca	37	12	122763398	122763398	+	Missense_Mutation	SNP	T	T	C	rs113078373		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CLIP1	NM_001247997	exon23	c.A3857G	p.K1286R	.	.	202	6	73	0	T|0.500;C|0.500	155
CLIP4	79745	bcgsc.ca	37	2	29354249	29354249	+	Missense_Mutation	SNP	A	A	G	rs140458378	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CLIP4	NM_024692	exon3	c.A259G	p.I87V	.	.	242	6	482	0	A|1.000;G|0.000	91
CMYA5	202333	bcgsc.ca	37	5	79034202	79034202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CMYA5	NM_153610	exon2	c.A9614G	p.K3205R	.	.	65	4	99	1	.	77
CNKSR2	22866	bcgsc.ca	37	X	21613501	21613501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CNKSR2	NM_014927	exon17	c.A1964G	p.D655G	.	.	87	4	166	0	.	625
CNOT11	55571	bcgsc.ca	37	2	101885709	101885709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_017546	exon7	c.T1367C	p.L456P	.	.	177	6	201	0	.	.
CNTN3	5067	bcgsc.ca	37	3	74316435	74316435	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CNTN3	NM_020872	exon20	c.A2799G	p.S933S	.	.	80	5	127	0	.	137
CNTN3	5067	bcgsc.ca	37	3	74413688	74413688	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CNTN3	NM_020872	exon9	c.T1143C	p.S381S	.	.	141	5	289	0	.	137
CNTNAP5	129684	bcgsc.ca	37	2	125281946	125281946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CNTNAP5	NM_130773	exon9	c.T1391C	p.L464P	.	.	51	4	115	1	.	524
COBLL1	22837	bcgsc.ca	37	2	165584555	165584555	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	COBLL1	NM_014900	exon4	c.G585A	p.S195S	.	.	98	5	234	0	.	93
COL13A1	1305	bcgsc.ca	37	10	71677071	71677071	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	COL13A1	NM_001130103	exon18	c.A978G	p.P326P	.	.	116	5	52	0	.	91
COL24A1	255631	bcgsc.ca	37	1	86515837	86515837	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	COL24A1	NM_152890	exon11	c.A1875G	p.E625E	.	.	56	4	76	0	.	94
COL4A3	1285	broad.mit.edu;bcgsc.ca	37	2	228131192	228131192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	COL4A3	NM_000091	exon22	c.T1375C	p.S459P	.	.	183	7	266	1	.	132
COPS3	8533	bcgsc.ca	37	17	17168228	17168228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	COPS3	NM_003653	exon6	c.G509T	p.C170F	.	.	144	5	116	0	.	226
CRB1	23418	broad.mit.edu	37	1	197313537	197313537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CRB1	NM_001257966	exon3	c.A779G	p.E260G	.	.	847	10	329	0	.	161
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126134509	126134509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CRB2	NM_173689	exon9	c.C2490A	p.H830Q	.	.	235	97	91	2	.	91
CRELD2	79174	bcgsc.ca	37	22	50312936	50312936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CRELD2	NM_024324	exon2	c.A188G	p.K63R	.	.	77	4	41	0	.	90
CSNK1G1	53944	bcgsc.ca	37	15	64472556	64472556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CSNK1G1	NM_022048	exon11	c.A1205G	p.E402G	.	.	74	4	88	0	.	319
CSRNP3	80034	bcgsc.ca	37	2	166535807	166535807	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CSRNP3	NM_001172173	exon7	c.T1302C	p.T434T	.	.	82	4	104	1	.	157
CTBS	1486	bcgsc.ca	37	1	85035660	85035660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CTBS	NM_004388	exon3	c.T479C	p.V160A	.	.	196	6	382	0	.	90
CTDSPL2	51496	bcgsc.ca	37	15	44806973	44806973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CTDSPL2	NM_016396	exon10	c.T1043C	p.F348S	.	.	62	4	285	0	.	90
CTNNA2	1496	bcgsc.ca	37	2	80782997	80782997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CTNNA2	NM_001164883	exon12	c.A1720G	p.T574A	.	.	91	4	103	0	.	368
CWH43	80157	bcgsc.ca	37	4	49040058	49040058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CWH43	NM_025087	exon13	c.A1664G	p.D555G	.	.	119	5	200	2	.	93
DCAF13	25879	bcgsc.ca	37	8	104438328	104438328	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DCAF13	NM_015420	exon4	c.A879G	p.P293P	.	.	198	6	231	1	.	135
DCAF4L2	138009	broad.mit.edu	37	8	88886122	88886122	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DCAF4L2	NM_152418	exon1	c.T78C	p.P26P	.	.	1033	10	336	0	.	91
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88886016	88886016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DCAF4L2	NM_152418	exon1	c.C184T	p.H62Y	.	.	544	270	199	0	.	91
DDB1	1642	bcgsc.ca	37	11	61099031	61099031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DDB1	NM_001923	exon2	c.A194G	p.E65G	.	.	257	10	175	2	.	661
DDX51	317781	bcgsc.ca	37	12	132627353	132627353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DDX51	NM_175066	exon3	c.T590C	p.V197A	.	.	149	7	35	0	.	227
DEF8	54849	bcgsc.ca	37	16	90030929	90030929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DEF8	NM_207514	exon12	c.T1382C	p.F461S	.	.	108	14	63	4	.	68
DENND5A	23258	bcgsc.ca	37	11	9182412	9182412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DENND5A	NM_001243254	exon12	c.A2284G	p.T762A	.	.	296	8	133	0	.	91
DGKH	160851	bcgsc.ca	37	13	42773728	42773728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DGKH	NM_001204504	exon20	c.T2312C	p.M771T	.	.	70	4	304	1	.	652
DHRS3	9249	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12677249	12677249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DHRS3	NM_004753	exon1	c.C105A	p.D35E	.	.	133	75	56	1	.	91
DIP2B	57609	bcgsc.ca	37	12	51089109	51089109	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DIP2B	NM_173602	exon15	c.T1779C	p.P593P	.	.	126	6	146	1	.	95
DMC1	11144	bcgsc.ca	37	22	38958320	38958320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DMC1	NM_007068	exon5	c.C298T	p.H100Y	.	.	49	4	104	1	.	91
DMD	1756	bcgsc.ca	37	X	32383203	32383203	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DMD	NM_004006	exon35	c.C4959T	p.L1653L	.	.	87	4	120	0	.	265
DMGDH	29958	bcgsc.ca	37	5	78351713	78351713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DMGDH	NM_013391	exon3	c.T295C	p.F99L	.	.	48	4	84	2	.	94
DMXL2	23312	bcgsc.ca	37	15	51829023	51829023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DMXL2	NM_001174117	exon12	c.T1654C	p.S552P	.	.	53	4	106	0	.	99
DMXL2	23312	bcgsc.ca	37	15	51855632	51855632	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DMXL2	NM_001174117	exon6	c.T513C	p.S171S	.	.	82	4	117	0	.	99
DNAH11	8701	bcgsc.ca	37	7	21750273	21750273	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAH11	.	.	.	.	.	.	124	6	213	0	.	146
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	76421607	76421607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAH17	NM_173628	exon80	c.T12961A	p.W4321R	.	.	100	12	31	0	.	142
DNAH7	56171	bcgsc.ca	37	2	196866433	196866433	+	Missense_Mutation	SNP	A	A	G	rs144390858	byfrequency;alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAH7	NM_018897	exon11	c.T1139C	p.M380T	.	.	112	5	190	0	A|0.992;C|0.008	102
DNAJB4	11080	bcgsc.ca	37	1	78478979	78478979	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAJB4	NM_007034	exon2	c.C456T	p.S152S	.	.	214	6	190	0	.	226
DOCK5	80005	bcgsc.ca	37	8	25209258	25209258	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DOCK5	NM_024940	exon27	c.G2766T	p.A922A	.	.	206	6	75	0	.	71
DPP6	1804	bcgsc.ca	37	7	154237665	154237665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DPP6	NM_130797	exon4	c.A506G	p.N169S	.	.	89	5	71	0	.	652
DPY19L2P1	554236	broad.mit.edu	37	7	35131521	35131521	+	RNA	SNP	G	G	A	rs200009436		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	707	21	325	3	G|0.999;A|0.001	.
DTD1	92675	bcgsc.ca	37	20	18724745	18724745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DTD1	NM_080820	exon5	c.T479C	p.L160P	.	.	85	5	43	0	.	24
DYM	54808	bcgsc.ca	37	18	46858323	46858323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DYM	NM_017653	exon8	c.A674G	p.Q225R	.	.	61	4	58	0	.	226
E2F8	79733	bcgsc.ca	37	11	19247367	19247367	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	E2F8	NM_024680	exon11	c.A1938G	p.S646S	.	.	191	7	88	0	.	91
ECEL1	9427	bcgsc.ca	37	2	233349289	233349289	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ECEL1	NM_004826	exon6	c.G1077A	p.L359L	.	.	117	6	69	0	.	90
ECM2	1842	broad.mit.edu	37	9	95277287	95277287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ECM2	NM_001393	exon4	c.A680G	p.K227R	.	.	668	10	429	0	.	131
EGFR	1956	broad.mit.edu;bcgsc.ca	37	7	55233025	55233025	+	Missense_Mutation	SNP	T	T	C	rs28384375	bycluster	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EGFR	NM_005228	exon15	c.T1775C	p.V592A	.	.	249	7	68	1	T|0.750;C|0.250	44910
EIF3D	8664	bcgsc.ca	37	22	36913346	36913346	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EIF3D	NM_003753	exon11	c.990+2T>C	.	.	.	156	7	121	1	.	69
EIF3IP1	442720	bcgsc.ca	37	7	109599847	109599847	+	RNA	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	60	4	31	0	.	.
EIF4EBP1	1978	bcgsc.ca	37	8	37914651	37914651	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EIF4EBP1	NM_004095	exon2	c.T198C	p.P66P	.	.	121	5	41	0	.	846
EIF5	1983	bcgsc.ca	37	14	103806771	103806771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EIF5	NM_001969	exon11	c.A1079G	p.K360R	.	.	135	5	150	0	.	155
EIF5B	9669	bcgsc.ca	37	2	99999364	99999364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EIF5B	NM_015904	exon14	c.T2251C	p.F751L	.	.	66	4	112	0	.	93
EML1	2009	bcgsc.ca	37	14	100384157	100384157	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EML1	NM_001008707	exon17	c.T1848C	p.S616S	.	.	247	7	232	1	.	138
EML5	161436	bcgsc.ca	37	14	89212604	89212604	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EML5	NM_183387	exon3	c.T381C	p.D127D	.	.	88	4	194	0	.	93
ENDOD1	23052	bcgsc.ca	37	11	94862024	94862024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ENDOD1	NM_015036	exon2	c.C784T	p.P262S	.	.	68	4	110	0	.	68
ENDOU	8909	broad.mit.edu	37	12	48110797	48110797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ENDOU	NM_001172439	exon5	c.A427G	p.S143G	.	.	990	13	456	1	.	93
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77075702	77075702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ENGASE	NM_001042573	exon4	c.A548G	p.H183R	.	.	197	82	65	0	.	91
EPB41	2035	bcgsc.ca	37	1	29442242	29442242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EPB41	NM_001166005	exon20	c.A2528G	p.E843G	.	.	164	6	72	0	.	91
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96219543	96219543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERAP2	NM_001130140	exon3	c.T623C	p.F208S	.	.	175	149	250	0	.	68
ERBB2IP	55914	broad.mit.edu;bcgsc.ca	37	5	65288707	65288707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERBB2IP	NM_001253701	exon3	c.A161G	p.D54G	.	.	46	4	82	0	.	653
ERC1	23085	bcgsc.ca	37	12	1517374	1517374	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERC1	NM_178040	exon17	c.C2985T	p.S995S	.	.	74	5	47	0	.	660
ETAA1	54465	bcgsc.ca	37	2	67626681	67626681	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ETAA1	NM_019002	exon3	c.353-1G>C	.	.	.	141	5	548	0	.	156
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242045224	242045224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EXO1	NM_130398	exon14	c.G2116A	p.D706N	.	.	210	77	467	1	.	661
EXPH5	23086	bcgsc.ca	37	11	108380773	108380773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EXPH5	NM_015065	exon6	c.T5461C	p.S1821P	.	.	84	5	76	0	.	95
EYA3	2140	bcgsc.ca	37	1	28315145	28315145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EYA3	NM_001990	exon16	c.A1441G	p.I481V	.	.	197	6	225	0	.	93
F9	2158	bcgsc.ca	37	X	138619247	138619247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	F9	NM_000133	exon2	c.T167C	p.V56A	.	.	200	6	213	0	.	227
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225266346	225266346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM124B	NM_024785	exon1	c.G140C	p.R47P	.	.	65	53	59	0	.	92
FAM182B	728882	ucsc.edu	37	20	25755462	25755462	+	RNA	SNP	G	G	T	rs71286794	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	79	15	16	0	AGGCTCTGCTGGG|0.500;GGGCTCTGCTGGA|0.500	.
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159048703	159048703	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM198B	NM_001031700	exon6	c.T1440A	p.S480S	.	.	76	64	134	0	.	90
FAM200B	285550	bcgsc.ca	37	4	15690443	15690443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001145191	exon2	c.T1843C	p.F615L	.	.	150	5	197	1	.	.
FAM20A	54757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66533757	66533757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM20A	NM_017565	exon11	c.T1487C	p.L496P	.	.	242	85	149	1	.	90
FARP1	10160	bcgsc.ca	37	13	99087866	99087866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FARP1	NM_005766	exon19	c.T2180C	p.L727P	.	.	153	7	78	0	.	290
FASN	2194	bcgsc.ca;mdanderson.org	37	17	80051491	80051491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FASN	NM_004104	exon4	c.T437C	p.F146S	.	.	79	41	40	1	.	90
FBL	2091	bcgsc.ca	37	19	40330916	40330916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBL	NM_001436	exon4	c.T335C	p.V112A	.	.	169	6	95	1	.	91
FBN1	2200	bcgsc.ca	37	15	48802327	48802327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBN1	NM_000138	exon14	c.A1628G	p.N543S	.	.	95	4	257	0	.	92
FBN2	2201	bcgsc.ca	37	5	127671678	127671678	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBN2	NM_001999	exon29	c.3724+2T>C	.	.	.	66	6	58	0	.	146
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16577289	16577289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBXO42	NM_018994	exon10	c.G2030T	p.S677I	.	.	393	133	236	0	.	228
FBXW11	23291	bcgsc.ca	37	5	171337674	171337674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBXW11	NM_012300	exon3	c.T275C	p.V92A	.	.	79	5	132	0	.	272
FDPS	2224	broad.mit.edu;bcgsc.ca	37	1	155279955	155279955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FDPS	NM_001135821	exon3	c.G298A	p.G100R	.	.	370	9	106	0	.	90
FDXACB1	91893	bcgsc.ca	37	11	111747242	111747242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FDXACB1	NM_138378	exon4	c.T655C	p.F219L	.	.	152	7	133	0	.	22
FEM1C	56929	bcgsc.ca	37	5	114879113	114879113	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FEM1C	NM_020177	exon2	c.A78G	p.K26K	.	.	138	5	107	0	.	155
FEV	54738	broad.mit.edu;bcgsc.ca	37	2	219846741	219846741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FEV	NM_017521	exon3	c.A365G	p.Y122C	.	.	171	8	68	0	.	846
FH	2271	broad.mit.edu;bcgsc.ca	37	1	241669428	241669428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FH	NM_000143	exon6	c.C779A	p.T260K	.	.	187	7	182	5	.	416
FHAD1	114827	broad.mit.edu	37	1	15654791	15654791	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FHAD1	NM_052929	exon13	c.C1576T	p.Q526X	.	.	409	7	243	0	.	69
FIGN	55137	bcgsc.ca	37	2	164467075	164467075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FIGN	NM_018086	exon3	c.A1267G	p.T423A	.	.	138	5	108	0	.	156
FLG	2312	broad.mit.edu	37	1	152281460	152281460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FLG	NM_002016	exon3	c.G5902A	p.G1968R	.	.	2090	15	978	1	.	106
FLNB	2317	bcgsc.ca	37	3	58097543	58097543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FLNB	NM_001457	exon17	c.T2510C	p.V837A	.	.	256	7	146	0	.	593
FMNL2	114793	bcgsc.ca	37	2	153473639	153473639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FMNL2	NM_052905	exon13	c.C1247T	p.A416V	.	.	232	7	181	0	.	516
FMO4	2329	bcgsc.ca	37	1	171292300	171292300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	FMO4,NS,carcinoma,+1	FMO4	NM_002022	exon4	c.A290G	p.H97R	.	.	133	6	98	0	.	537
FOSL2	2355	ucsc.edu	37	2	28635279	28635279	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FOSL2	NM_005253	exon4	c.A945G	p.S315S	.	.	42	4	13	0	.	712
FREM1	158326	broad.mit.edu;bcgsc.ca	37	9	14737480	14737480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FREM1	NM_144966	exon38	c.G6454A	p.V2152I	.	.	203	6	157	0	.	138
FRG1B	284802	bcgsc.ca	37	20	29623253	29623253	+	RNA	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FRG1B	.	.	.	.	.	.	687	36	599	0	.	22
FRMPD2	143162	bcgsc.ca	37	10	49420064	49420064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FRMPD2	NM_001018071	exon13	c.A1544G	p.E515G	.	.	142	6	59	0	.	153
FZD3	7976	broad.mit.edu	37	8	28409224	28409224	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FZD3	NM_017412	exon6	c.A1509G	p.T503T	.	.	619	11	395	0	.	659
GAB4	128954	bcgsc.ca	37	22	17449254	17449254	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GAB4	NM_001037814	exon5	c.C957A	p.T319T	.	.	79	4	91	0	.	91
GABRA4	2557	bcgsc.ca	37	4	46979092	46979092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GABRA4	NM_000809	exon5	c.T563C	p.L188S	.	.	82	4	346	1	.	156
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46930408	46930408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GABRA4	NM_000809	exon9	c.C1499A	p.S500X	.	.	99	63	196	1	.	156
GABRB2	2561	broad.mit.edu	37	5	160757990	160757990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GABRB2	NM_021911	exon9	c.T977C	p.V326A	.	.	246	8	184	1	.	91
GALNT13	114805	bcgsc.ca	37	2	155252593	155252593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GALNT13	NM_052917	exon10	c.A1247G	p.N416S	.	.	66	4	91	0	.	95
GART	2618	bcgsc.ca	37	21	34877907	34877907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GART	NM_001136005	exon20	c.A2686G	p.M896V	.	.	184	6	166	0	.	91
GAS2L2	246176	bcgsc.ca	37	17	34072600	34072600	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GAS2L2	NM_139285	exon6	c.G1916C	p.R639T	.	.	134	6	50	0	.	227
GAS2L3	283431	bcgsc.ca	37	12	100995485	100995485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GAS2L3	NM_174942	exon5	c.A257G	p.D86G	.	.	76	4	233	1	.	227
GC	2638	bcgsc.ca	37	4	72634151	72634151	+	Splice_Site	SNP	C	C	T	rs112961993	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GC	NM_001204307	exon5	c.186-1G>A	.	.	.	80	4	123	0	.	93
GCA	25801	bcgsc.ca	37	2	163212968	163212968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GCA	NM_012198	exon4	c.A283G	p.R95G	.	.	86	4	316	1	.	90
GEMIN4	50628	bcgsc.ca	37	17	651086	651086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GEMIN4	NM_015721	exon2	c.A197G	p.K66R	.	.	123	5	74	0	.	206
GFPT1	2673	bcgsc.ca	37	2	69555514	69555514	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GFPT1	NM_001244710	exon18	c.A1782G	p.K594K	.	.	87	4	159	0	.	91
GGNBP2	79893	bcgsc.ca	37	17	34937964	34937964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GGNBP2	NM_024835	exon9	c.A1211G	p.E404G	.	.	195	6	145	0	.	70
GIGYF2	26058	bcgsc.ca	37	2	233671287	233671287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GIGYF2	NM_001103147	exon17	c.A1789G	p.S597G	.	.	266	7	384	0	.	28
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42883077	42883077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GJC1	NM_005497	exon3	c.G109C	p.A37P	.	.	230	96	139	0	.	248
GLB1	2720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33106973	33106973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GLB1	NM_001135602	exon3	c.G322A	p.A108T	.	.	428	230	314	0	.	135
GMPR2	51292	bcgsc.ca	37	14	24702494	24702494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GMPR2	NM_016576	exon1	c.T89C	p.F30S	.	.	133	5	103	0	.	93
GNB2L1	10399	bcgsc.ca	37	5	180669285	180669285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GNB2L1	NM_006098	exon2	c.G170A	p.R57H	.	.	136	5	83	0	.	227
GNPTG	84572	bcgsc.ca	37	16	1402248	1402248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GNPTG	NM_032520	exon3	c.A119G	p.N40S	.	.	108	5	44	0	.	90
GPC6	10082	bcgsc.ca	37	13	95050815	95050815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GPC6	NM_005708	exon8	c.A1385G	p.Q462R	.	.	67	4	83	0	.	90
GPR111	222611	bcgsc.ca	37	6	47649679	47649679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GPR111	NM_153839	exon7	c.A1180G	p.I394V	.	.	151	5	135	0	.	91
GPR171	29909	bcgsc.ca	37	3	150916682	150916682	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GPR171	NM_013308	exon3	c.T492C	p.G164G	.	.	223	6	178	0	.	90
GPR19	2842	bcgsc.ca	37	12	12814631	12814631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GPR19	NM_006143	exon4	c.G752T	p.W251L	.	.	156	5	75	0	.	91
GPRASP1	9737	bcgsc.ca	37	X	101909501	101909501	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GPRASP1	NM_001099411	exon3	c.A660G	p.K220K	.	.	257	8	79	0	.	131
GRAMD1C	54762	bcgsc.ca	37	3	113627885	113627885	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GRAMD1C	NM_017577	exon9	c.A870G	p.R290R	.	.	81	4	199	0	.	93
GRIA4	2893	bcgsc.ca	37	11	105776012	105776012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GRIA4	NM_001077244	exon9	c.C1143A	p.S381R	.	.	42	4	46	0	.	230
GRM4	2914	bcgsc.ca	37	6	34008446	34008446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GRM4	NM_000841	exon7	c.G1248A	p.M416I	.	.	195	7	77	0	.	525
GSDMC	56169	bcgsc.ca	37	8	130761708	130761708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GSDMC	NM_031415	exon13	c.A1277G	p.Q426R	.	.	144	6	73	0	.	93
GSE1	23199	hgsc.bcm.edu;bcgsc.ca	37	16	85687939	85687940	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_014615	exon4	c.482_483del	p.161_161del	.	.	148	121	94	0	.	.
GTF3C1	2975	bcgsc.ca	37	16	27506612	27506612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GTF3C1	NM_001520	exon15	c.A2552G	p.E851G	.	.	138	9	47	0	.	94
GUCY1A2	2977	bcgsc.ca	37	11	106680925	106680925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GUCY1A2	NM_000855	exon5	c.T1486C	p.S496P	.	.	76	4	179	2	.	589
GUK1	2987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	228336430	228336430	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GUK1	NM_001242840	exon7	c.C603T	p.P201P	.	.	101	49	20	0	.	115
HAND2	9464	hgsc.bcm.edu;bcgsc.ca	37	4	174450187	174450187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HAND2	NM_021973	exon1	c.C254A	p.P85Q	.	.	22	22	7	0	.	91
HEATR2	54919	hgsc.bcm.edu	37	7	769380	769381	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HEATR2	NM_017802	exon2	c.676_677insC	p.A226fs	.	.	225	14	56	0	.	69
HELLS	3070	bcgsc.ca	37	10	96333931	96333931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HELLS	NM_018063	exon8	c.T692C	p.M231T	.	.	150	5	119	0	.	92
HEPH	9843	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	65393436	65393436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HEPH	NM_138737	exon4	c.C580G	p.L194V	.	.	51	13	34	0	.	135
HERC6	55008	bcgsc.ca	37	4	89358919	89358919	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HERC6	NM_017912	exon20	c.G2541A	p.V847V	.	.	72	4	180	2	.	658
HIVEP2	3097	broad.mit.edu	37	6	143089642	143089642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HIVEP2	NM_006734	exon6	c.G5219A	p.S1740N	.	.	239	6	238	1	.	95
HK1	3098	broad.mit.edu	37	10	71144154	71144154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HK1	NM_033498	exon14	c.C1648T	p.R550C	.	.	497	6	242	0	.	252
HOXC8	3224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54405067	54405067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HOXC8	NM_022658	exon2	c.G631T	p.D211Y	.	.	146	33	43	0	.	91
HSPA9	3313	bcgsc.ca	37	5	137902347	137902347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HSPA9	NM_004134	exon9	c.A940G	p.K314E	.	.	90	4	98	0	.	226
HTR7	3363	bcgsc.ca	37	10	92509180	92509180	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HTR7	NM_019860	exon2	c.T711C	p.F237F	.	.	96	5	78	0	.	91
IBSP	3381	bcgsc.ca	37	4	88727295	88727295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IBSP	NM_004967	exon5	c.G205A	p.E69K	.	.	153	6	471	0	.	90
IBTK	25998	ucsc.edu	37	6	82891690	82891690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IBTK	NM_015525	exon26	c.G3631A	p.E1211K	.	.	45	4	101	6	.	92
IFI16	3428	hgsc.bcm.edu;bcgsc.ca	37	1	159015214	159015214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IFI16	NM_001206567	exon7	c.A1289T	p.Q430L	.	.	1731	213	1314	0	.	91
IGF1R	3480	bcgsc.ca	37	15	99439996	99439996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IGF1R	NM_000875	exon4	c.A964G	p.I322V	.	.	71	4	64	0	.	1490
IGSF11	152404	bcgsc.ca	37	3	118645083	118645083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IGSF11	NM_001015887	exon4	c.T445C	p.C149R	.	.	48	4	36	0	.	90
IL10RA	3587	bcgsc.ca	37	11	117869545	117869545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IL10RA	NM_001558	exon7	c.A926G	p.K309R	.	.	131	6	88	0	.	91
INPP5K	51763	bcgsc.ca	37	17	1400013	1400013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	INPP5K	NM_016532	exon9	c.T1048C	p.S350P	.	.	164	6	96	0	.	68
ITCH	83737	bcgsc.ca	37	20	33077090	33077090	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITCH	NM_001257137	exon22	c.T2236C	p.L746L	.	.	172	7	184	0	.	659
ITGA1	3672	bcgsc.ca	37	5	52194127	52194127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITGA1	NM_181501	exon11	c.A1223G	p.Q408R	.	.	83	4	106	0	.	228
ITGAV	3685	broad.mit.edu;bcgsc.ca	37	2	187540575	187540575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITGAV	NM_002210	exon28	c.T2849C	p.L950P	.	.	117	5	297	0	.	653
ITGAX	3687	bcgsc.ca	37	16	31382969	31382969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITGAX	NM_000887	exon17	c.T2024C	p.V675A	.	.	225	6	81	0	.	229
ITSN1	6453	ucsc.edu	37	21	35257810	35257810	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITSN1	NM_003024	exon38	c.A4827G	p.K1609K	.	.	39	4	29	1	.	94
JARID2	3720	bcgsc.ca	37	6	15374438	15374438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	JARID2	NM_004973	exon2	c.A136G	p.R46G	.	.	156	5	114	0	.	228
JMJD7-PLA2G4B	8681	bcgsc.ca	37	15	42135933	42135933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	JMJD7-PLA2G4B	NM_005090	exon16	c.T1496C	p.L499P	.	.	156	6	97	0	.	135
JRKL	8690	bcgsc.ca	37	11	96123963	96123963	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	JRKL	NM_001261833	exon2	c.A150G	p.E50E	.	.	93	4	92	0	.	90
KAT6B	23522	bcgsc.ca	37	10	76739027	76739027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_012330	exon10	c.T2161C	p.S721P	.	.	101	5	144	0	.	.
KAT6B	23522	bcgsc.ca	37	10	76741646	76741646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_012330	exon11	c.C2333T	p.A778V	.	.	72	4	140	0	.	.
KCNA1	3736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5021299	5021299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNA1	NM_000217	exon2	c.A755G	p.N252S	.	.	262	117	96	2	.	228
KCNAB1	7881	bcgsc.ca	37	3	156234118	156234118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNAB1	NM_172160	exon11	c.A925G	p.N309D	.	.	136	6	78	0	.	94
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	156009791	156009791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNAB1	NM_172159	exon1	c.T95A	p.V32E	.	.	313	27	141	0	.	94
KCNC1	3746	broad.mit.edu;bcgsc.ca	37	11	17801124	17801124	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNC1	NM_001112741	exon3	c.A1626G	p.R542R	.	.	190	7	43	0	.	91
KCNC2	3747	bcgsc.ca	37	12	75442011	75442011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNC2	NM_139137	exon4	c.A1702G	p.K568E	.	.	123	6	199	0	.	224
KCNH8	131096	bcgsc.ca	37	3	19436794	19436794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNH8	NM_144633	exon7	c.T1168C	p.W390R	.	.	63	4	179	0	.	524
KCNIP4	80333	bcgsc.ca	37	4	20751295	20751295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNIP4	NM_025221	exon4	c.T359C	p.V120A	.	.	62	4	67	0	.	91
KCNJ18	100134444	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	21319829	21319829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001194958	exon3	c.C1175A	p.A392E	.	.	100	21	25	0	.	.
KCNMA1	3778	bcgsc.ca	37	10	78799393	78799393	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNMA1	NM_002247	exon15	c.T1752C	p.I584I	.	.	95	4	114	0	.	93
KCNMA1	3778	bcgsc.ca	37	10	78844435	78844435	+	Missense_Mutation	SNP	A	A	G	rs201243440	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNMA1	NM_002247	exon12	c.T1483C	p.C495R	.	.	126	5	88	0	.	93
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48886580	48886580	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDELR1	NM_006801	exon5	c.A609G	p.L203L	.	.	107	56	49	0	.	90
KDM4A	9682	broad.mit.edu	37	1	44169762	44169762	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDM4A	NM_014663	exon21	c.C3033A	p.P1011P	.	.	455	6	221	0	.	227
KDM4C	23081	bcgsc.ca	37	9	7169972	7169972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDM4C	NM_001146694	exon21	c.A3076G	p.T1026A	.	.	178	6	127	0	.	228
KDM5A	5927	bcgsc.ca	37	12	464359	464359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDM5A	NM_001042603	exon7	c.A835G	p.M279V	.	.	184	7	107	0	.	227
KDM5B	10765	bcgsc.ca	37	1	202698299	202698299	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDM5B	NM_006618	exon27	c.G4500A	p.V1500V	.	.	210	6	111	0	.	273
KDM5D	8284	bcgsc.ca	37	Y	21868457	21868457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDM5D	NM_001146705	exon27	c.G4232T	p.R1411L	.	.	86	5	40	0	.	560
KIAA0430	9665	bcgsc.ca	37	16	15730167	15730167	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA0430	NM_014647	exon3	c.G177A	p.V59V	.	.	166	6	170	0	.	90
KIAA0825	285600	bcgsc.ca	37	5	93856038	93856038	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA0825	NM_173665	exon5	c.T885C	p.C295C	.	.	148	6	261	0	.	91
KIAA1009	22832	bcgsc.ca	37	6	84879102	84879102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1009	NM_014895	exon18	c.A2330G	p.E777G	.	.	88	4	267	0	.	91
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268886	123268886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1109	NM_015312	exon74	c.G13081C	p.A4361P	.	.	60	17	138	0	.	80
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138550956	138550956	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1244	NM_020340	exon5	c.T387C	p.D129D	.	.	406	181	302	0	.	228
KIAA1432	57589	bcgsc.ca	37	9	5745979	5745979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1432	NM_001206557	exon11	c.T1144C	p.S382P	.	.	135	8	122	0	.	90
KIAA1731	85459	bcgsc.ca	37	11	93429987	93429987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1731	NM_033395	exon15	c.A1909G	p.R637G	.	.	103	5	88	0	.	22
KIF20B	9585	bcgsc.ca	37	10	91512377	91512377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIF20B	NM_016195	exon25	c.A4156G	p.R1386G	.	.	87	4	129	0	.	93
KIF21A	55605	bcgsc.ca	37	12	39701404	39701404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIF21A	NM_001173464	exon34	c.G4405A	p.A1469T	.	.	260	7	219	0	.	97
KIF3A	11127	bcgsc.ca	37	5	132052652	132052652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIF3A	NM_007054	exon6	c.A641G	p.N214S	.	.	49	4	93	0	.	91
KISS1	3814	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	204159887	204159887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KISS1	NM_002256	exon3	c.G142T	p.E48X	.	.	101	50	26	0	.	947
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55599301	55599301	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIT	NM_000222	exon17	c.T2427A	p.C809X	.	.	82	17	174	0	.	20166
KL	9365	bcgsc.ca	37	13	33635660	33635660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KL	NM_004795	exon4	c.A2444G	p.D815G	.	.	61	4	59	0	.	155
KLB	152831	bcgsc.ca	37	4	39435882	39435882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KLB	NM_175737	exon2	c.A878G	p.K293R	.	.	274	7	204	3	.	69
KLF7	8609	bcgsc.ca	37	2	207945967	207945967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KLF7	NM_001270942	exon5	c.T677C	p.I226T	.	.	78	4	116	2	.	91
KLKB1	3818	bcgsc.ca	37	4	187175869	187175869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KLKB1	NM_000892	exon12	c.A1441G	p.N481D	.	.	98	4	104	0	.	227
KPNA3	3839	bcgsc.ca	37	13	50285105	50285105	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KPNA3	NM_002267	exon11	c.A825G	p.E275E	.	.	67	4	90	0	.	226
KRT6C	286887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52863028	52863028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KRT6C	NM_173086	exon9	c.A1513T	p.S505C	.	.	135	29	72	0	.	114
KRT7	3855	bcgsc.ca	37	12	52636851	52636851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KRT7	NM_005556	exon6	c.G914T	p.R305L	.	.	188	7	72	0	.	90
KRTAP10-1	386677	bcgsc.ca	37	21	45959773	45959773	+	Silent	SNP	C	C	T	rs79593866		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KRTAP10-1	NM_198691	exon1	c.G261A	p.P87P	.	.	238	15	96	4	.	91
KRTAP1-1	81851	bcgsc.ca	37	17	39197485	39197485	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_030967	exon1	c.T165C	p.C55C	.	.	268	11	85	1	.	.
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001190460	exon1	c.C453T	p.P151P	.	.	172	32	40	0	C|0.500;T|0.500	.
KTN1	3895	bcgsc.ca	37	14	56139686	56139686	+	Missense_Mutation	SNP	A	A	G	rs142760084		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KTN1	NM_001079521	exon39	c.A3643G	p.K1215E	.	.	56	4	160	0	A|1.000;G|0.000	1147
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134369796	134369796	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KY	NM_178554	exon1	c.C7T	p.L3L	.	.	325	85	138	0	.	24
LACC1	144811	bcgsc.ca	37	13	44456406	44456406	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001128303	exon3	c.C648A	p.S216S	.	.	86	4	153	1	.	.
LAMA1	284217	bcgsc.ca	37	18	7008566	7008566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMA1	NM_005559	exon28	c.A4043G	p.K1348R	.	.	141	6	77	0	.	149
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	209789918	209789918	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMB3	NM_000228	exon22	c.C3280T	p.Q1094X	.	.	631	221	166	0	.	156
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133948175	133948175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMC3	NM_006059	exon19	c.T3370A	p.S1124T	.	.	283	127	94	0	.	93
LARS	51520	bcgsc.ca	37	5	145531510	145531510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LARS	NM_020117	exon14	c.A1340G	p.D447G	.	.	115	5	213	2	.	90
LBR	3930	broad.mit.edu	37	1	225611721	225611721	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LBR	NM_194442	exon2	c.T57C	p.S19S	.	.	543	12	189	1	.	228
LDLRAD4	753	bcgsc.ca	37	18	13645603	13645603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_181482	exon6	c.A814G	p.S272G	.	.	122	5	33	0	.	.
LIMK2	3985	bcgsc.ca	37	22	31669443	31669443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LIMK2	NM_005569	exon14	c.A1564G	p.S522G	.	.	155	8	87	0	.	548
LLGL2	3993	bcgsc.ca	37	17	73564700	73564700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LLGL2	NM_004524	exon11	c.T1180C	p.S394P	.	.	239	16	86	1	.	251
LMAN1	3998	bcgsc.ca	37	18	57006155	57006155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LMAN1	NM_005570	exon9	c.G986A	p.R329Q	.	.	127	5	172	1	.	91
LNPEP	4012	bcgsc.ca	37	5	96341936	96341936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LNPEP	NM_005575	exon10	c.A1945G	p.S649G	.	.	85	5	157	2	.	229
LOC285501	0	bcgsc.ca	37	4	178882049	178882049	+	RNA	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	52	4	310	0	.	.
LOC388849	0	bcgsc.ca	37	22	20138298	20138298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	80	4	95	3	.	.
LOC400891	0	bcgsc.ca	37	22	21407732	21407732	+	RNA	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	77	5	80	3	.	.
LOC643802	0	bcgsc.ca	37	16	53404804	53404804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001207030	exon1	c.T98C	p.L33P	.	.	190	8	87	0	.	.
LONP1	9361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	5699211	5699211	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LONP1	NM_004793	exon10	c.C1512T	p.S504S	.	.	43	27	22	0	.	91
LPP	4026	bcgsc.ca	37	3	188592145	188592145	+	Missense_Mutation	SNP	G	G	T	rs9830664	byfrequency;alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LPP	NM_005578	exon11	c.G1717T	p.G573C	.	.	130	6	99	0	G|0.998;A|0.002	659
LRBA	987	bcgsc.ca	37	4	151753039	151753039	+	Silent	SNP	T	T	C	rs145434636	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRBA	NM_006726	exon29	c.A4659G	p.E1553E	.	.	85	4	297	2	T|1.000;A|0.000	157
LRP1B	53353	bcgsc.ca	37	2	141093371	141093371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP1B	NM_018557	exon78	c.G11929T	p.D3977Y	.	.	63	4	154	1	.	311
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141250227	141250227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP1B	NM_018557	exon57	c.G9070A	p.E3024K	.	.	59	15	113	0	.	311
LRP2	4036	bcgsc.ca	37	2	170007421	170007421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP2	NM_004525	exon68	c.A12577G	p.N4193D	.	.	89	5	189	2	.	175
LRP2	4036	bcgsc.ca	37	2	170011054	170011054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP2	NM_004525	exon66	c.T12211C	p.S4071P	.	.	81	4	270	0	.	175
LRPAP1	4043	bcgsc.ca	37	4	3517906	3517906	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRPAP1	NM_002337	exon6	c.G771A	p.V257V	.	.	66	4	33	0	.	92
LRPPRC	10128	broad.mit.edu;mdanderson.org	37	2	44201378	44201378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRPPRC	NM_133259	exon9	c.C1066T	p.Q356X	.	.	594	29	409	1	.	93
LRRC16B	90668	bcgsc.ca	37	14	24524465	24524465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRRC16B	NM_138360	exon8	c.A551G	p.H184R	.	.	145	5	109	0	.	139
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79982609	79982609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRRC45	NM_144999	exon3	c.A323G	p.K108R	.	.	108	46	51	0	.	91
LRRFIP2	9209	bcgsc.ca	37	3	37136305	37136305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRRFIP2	NM_006309	exon18	c.A1013G	p.D338G	.	.	88	4	106	0	.	91
LTN1	26046	bcgsc.ca	37	21	30331905	30331905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LTN1	NM_015565	exon13	c.T2606C	p.I869T	.	.	74	4	172	0	.	530
LTN1	26046	bcgsc.ca	37	21	30357196	30357196	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LTN1	NM_015565	exon4	c.A531G	p.K177K	.	.	76	4	141	0	.	530
LYN	4067	bcgsc.ca	37	8	56854455	56854455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LYN	NM_002350	exon2	c.A37G	p.S13G	.	.	86	4	49	0	.	1002
MAGI2	9863	bcgsc.ca	37	7	77885867	77885867	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAGI2	NM_012301	exon10	c.T1440C	p.C480C	.	.	76	5	88	0	.	461
MAN2A2	4122	broad.mit.edu	37	15	91456147	91456147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAN2A2	NM_006122	exon16	c.A2510G	p.E837G	.	.	247	6	208	1	.	136
MAP3K15	389840	bcgsc.ca	37	X	19428084	19428084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAP3K15	NM_001001671	exon12	c.T1706C	p.M569T	.	.	65	4	129	0	.	335
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50915494	50915494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAP4K5	NM_006575	exon15	c.A1072G	p.M358V	.	.	39	29	200	0	.	546
MAP7D3	79649	broad.mit.edu	37	X	135326873	135326873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAP7D3	NM_024597	exon4	c.A335G	p.K112R	.	.	1214	14	494	3	.	110
MARCH2	51257	bcgsc.ca	37	19	8491683	8491683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MARCH2	NM_001005415	exon3	c.A367G	p.T123A	.	.	139	5	51	0	.	70
MARK1	4139	bcgsc.ca	37	1	220789292	220789292	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MARK1	NM_018650	exon7	c.T507C	p.A169A	.	.	108	5	197	2	.	802
MARK4	57787	bcgsc.ca	37	19	45762401	45762401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MARK4	NM_001199867	exon2	c.A206G	p.N69S	.	.	71	4	39	0	.	782
MARVELD2	153562	bcgsc.ca	37	5	68715406	68715406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MARVELD2	NM_001244734	exon2	c.A194G	p.D65G	.	.	139	5	110	0	.	22
MASP2	10747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11107262	11107262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MASP2	NM_139208	exon1	c.G3A	p.M1I	.	.	112	36	47	0	.	94
MBD3	53615	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1578491	1578491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBD3	NM_003926	exon6	c.G724T	p.A242S	.	.	98	20	39	0	.	93
MBD3L1	85509	bcgsc.ca	37	19	8953743	8953743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBD3L1	NM_145208	exon1	c.A389G	p.E130G	.	.	191	7	133	0	.	226
MBD5	55777	ucsc.edu	37	2	149243315	149243315	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBD5	NM_018328	exon11	c.T2850C	p.D950D	.	.	42	4	91	0	.	95
MBTPS1	8720	bcgsc.ca	37	16	84101339	84101339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBTPS1	NM_003791	exon16	c.G2161A	p.V721I	.	.	79	4	49	0	.	92
MCAT	27349	bcgsc.ca	37	22	43529465	43529465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCAT	NM_173467	exon4	c.T757C	p.S253P	.	.	77	4	53	0	.	91
MCCD1	401250	bcgsc.ca	37	6	31496914	31496914	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCCD1	NM_001011700	exon1	c.A123G	p.E41E	.	.	224	6	90	0	.	90
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13239672	13239672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCM10	NM_182751	exon15	c.C2027T	p.T676I	.	.	287	118	148	0	.	653
MCM3AP	8888	bcgsc.ca	37	21	47660787	47660787	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCM3AP	NM_003906	exon26	c.T5571C	p.A1857A	.	.	141	6	93	0	.	291
MCM9	254394	bcgsc.ca	37	6	119245184	119245184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCM9	NM_017696	exon2	c.T413C	p.V138A	.	.	181	6	121	0	.	515
MDH1B	130752	bcgsc.ca	37	2	207625703	207625703	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MDH1B	NM_001039845	exon2	c.A57G	p.E19E	.	.	70	4	131	2	.	94
MEPE	56955	bcgsc.ca	37	4	88767064	88767064	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MEPE	NM_020203	exon4	c.G1044A	p.K348K	.	.	64	4	69	0	.	93
METTL3	56339	bcgsc.ca	37	14	21969916	21969916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	METTL3	NM_019852	exon4	c.A853G	p.M285V	.	.	119	6	123	0	.	92
MFSD6	54842	bcgsc.ca	37	2	191301350	191301350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MFSD6	NM_017694	exon3	c.A595G	p.R199G	.	.	161	5	140	0	.	92
MFSD6	54842	broad.mit.edu	37	2	191302122	191302122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MFSD6	NM_017694	exon3	c.T1367C	p.F456S	.	.	484	9	319	1	.	92
MGA	23269	bcgsc.ca	37	15	42000011	42000011	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MGA	NM_001080541	exon6	c.T2274C	p.T758T	.	.	175	5	183	0	.	522
MGAT2	4247	bcgsc.ca	37	14	50088716	50088716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MGAT2	NM_002408	exon1	c.A730G	p.R244G	.	.	134	5	79	0	.	90
MLF1IP	79682	bcgsc.ca	37	4	185650156	185650156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MLF1IP	NM_024629	exon3	c.T130C	p.F44L	.	.	220	8	211	0	.	90
MLL	4297	bcgsc.ca	37	11	118373147	118373147	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MLL	NM_001197104	exon27	c.A6540G	p.T2180T	.	.	150	5	166	2	.	1255
MMP11	4320	bcgsc.ca	37	22	24125648	24125648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MMP11	NM_005940	exon8	c.A1384G	p.K462E	.	.	80	4	110	0	.	291
MMP17	4326	ucsc.edu	37	12	132325162	132325162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MMP17	NM_016155	exon4	c.T467C	p.V156A	.	.	45	4	27	0	.	226
MMS19	64210	bcgsc.ca	37	10	99226577	99226577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_022362	exon15	c.A1379G	p.Q460R	.	.	174	6	123	0	.	.
MORF4L2	9643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102931737	102931737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MORF4L2	NM_001142422	exon5	c.G219T	p.R73S	.	.	219	206	82	0	.	130
MRPL19	9801	bcgsc.ca	37	2	75881895	75881895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MRPL19	NM_014763	exon5	c.G509A	p.R170Q	.	.	72	4	163	0	.	90
MRPL39	54148	bcgsc.ca	37	21	26978944	26978944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MRPL39	NM_017446	exon2	c.T97C	p.S33P	.	.	139	6	104	0	.	90
MRPS31	10240	bcgsc.ca	37	13	41303644	41303644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MRPS31	NM_005830	exon7	c.T1052C	p.M351T	.	.	82	6	171	0	.	226
MS4A1	931	bcgsc.ca	37	11	60229953	60229953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MS4A1	NM_152866	exon3	c.T106C	p.S36P	.	.	141	6	154	0	.	525
MTM1	4534	bcgsc.ca	37	X	149831932	149831932	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MTM1	NM_000252	exon14	c.A1494G	p.L498L	.	.	165	5	99	1	.	228
MTMR11	10903	bcgsc.ca	37	1	149903841	149903841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MTMR11	NM_001145862	exon12	c.T1118C	p.L373P	.	.	222	7	64	0	.	90
MTMR2	8898	bcgsc.ca	37	11	95591742	95591742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MTMR2	NM_016156	exon6	c.A523G	p.I175V	.	.	63	4	124	0	.	91
MUC16	94025	bcgsc.ca	37	19	9075917	9075917	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MUC16	NM_024690	exon3	c.A11529G	p.A3843A	.	.	175	7	294	0	.	566
MUC4	4585	hgsc.bcm.edu	37	3	195518110	195518110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MUC4	NM_018406	exon2	c.C341T	p.A114V	.	.	319	18	187	0	.	90
MUC5B	727897	bcgsc.ca	37	11	1264490	1264490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_002458	exon31	c.G6380A	p.S2127N	.	.	820	118	257	1	.	.
MUC5B	727897	broad.mit.edu	37	11	1268261	1268261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_002458	exon31	c.G10151A	p.S3384N	.	.	976	19	322	0	.	.
MUC6	4588	bcgsc.ca	37	11	1016822	1016822	+	Silent	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MUC6	NM_005961	exon31	c.T5979G	p.T1993T	.	.	5392	198	2216	71	.	23
MX1	4599	bcgsc.ca	37	21	42808945	42808945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MX1	NM_001144925	exon9	c.T302C	p.I101T	.	.	58	4	33	0	.	515
MX2	4600	bcgsc.ca	37	21	42780143	42780143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MX2	NM_002463	exon14	c.A2131G	p.S711G	.	.	195	7	102	0	.	92
MXRA7	439921	bcgsc.ca	37	17	74673740	74673740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MXRA7	NM_001008528	exon4	c.A545G	p.D182G	.	.	147	6	31	0	.	90
MYCBP2	23077	broad.mit.edu;bcgsc.ca	37	13	77641991	77641991	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYCBP2	NM_015057	exon71	c.T12180C	p.S4060S	.	.	56	5	85	0	.	236
MYH13	8735	broad.mit.edu;bcgsc.ca	37	17	10215344	10215344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYH13	NM_003802	exon32	c.A4415G	p.E1472G	.	.	280	10	140	2	.	6
MYL6B	140465	bcgsc.ca	37	12	56548903	56548903	+	Silent	SNP	T	T	C	rs202164722	byfrequency;alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYL6B	NM_001199629	exon4	c.T267C	p.C89C	.	.	168	6	58	0	T|0.998;G|0.002	90
MYO16	23026	bcgsc.ca	37	13	109562364	109562364	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO16	NM_001198950	exon16	c.A1791G	p.T597T	.	.	83	4	200	0	.	142
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO18A	NM_078471	exon18	c.C2937A	p.G979G	.	.	102	13	21	2	.	22
MYO18B	84700	bcgsc.ca	37	22	26422412	26422412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO18B	NM_032608	exon43	c.A6472G	p.I2158V	.	.	22	3	45	0	.	142
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26422560	26422560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO18B	NM_032608	exon43	c.A6620G	p.D2207G	.	.	45	4	42	0	.	142
MYO1E	4643	bcgsc.ca	37	15	59553633	59553633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO1E	NM_004998	exon3	c.A223G	p.M75V	.	.	75	4	169	0	.	514
MYO3B	140469	bcgsc.ca	37	2	171238529	171238529	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO3B	NM_001083615	exon10	c.T975C	p.H325H	.	.	82	4	128	0	.	530
MYOD1	4654	bcgsc.ca	37	11	17741461	17741461	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYOD1	NM_002478	exon1	c.A132G	p.E44E	.	.	124	5	51	0	.	154
MYOM1	8736	bcgsc.ca	37	18	3173969	3173969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYOM1	NM_003803	exon8	c.T1141C	p.F381L	.	.	70	4	83	1	.	94
MYOZ2	51778	bcgsc.ca	37	4	120107304	120107304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYOZ2	NM_016599	exon6	c.A744G	p.I248M	.	.	51	6	109	0	.	90
N4BP2L2	10443	bcgsc.ca	37	13	33101543	33101543	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	N4BP2L2	NM_014887	exon4	c.1384+2T>C	.	.	.	84	4	90	0	.	68
NANS	54187	bcgsc.ca	37	9	100823191	100823191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NANS	NM_018946	exon2	c.A260G	p.H87R	.	.	290	7	106	0	.	91
NAV3	89795	bcgsc.ca	37	12	78401192	78401192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NAV3	NM_014903	exon8	c.C1874T	p.P625L	.	.	68	4	33	0	.	279
NBEA	26960	bcgsc.ca	37	13	35685038	35685038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NBEA	NM_015678	exon13	c.A1925G	p.Q642R	.	.	82	5	222	0	.	144
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	71	4	51	1	C|0.500;T|0.500	.
NCAM2	4685	bcgsc.ca	37	21	22658672	22658672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCAM2	NM_004540	exon4	c.T421C	p.S141P	.	.	48	4	134	2	.	94
NCAPG2	54892	bcgsc.ca	37	7	158451083	158451083	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCAPG2	NM_017760	exon17	c.C2007T	p.I669I	.	.	186	6	48	0	.	272
NCKAP1	10787	bcgsc.ca	37	2	183817543	183817543	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCKAP1	NM_205842	exon23	c.A2499G	p.A833A	.	.	75	5	236	0	.	92
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	.	.	230	9	106	3	.	292
NCOA7	135112	bcgsc.ca	37	6	126199457	126199457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCOA7	NM_001199619	exon6	c.A400G	p.T134A	.	.	61	4	99	0	.	227
NCOR1	9611	bcgsc.ca	37	17	15967441	15967441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCOR1	NM_001190440	exon34	c.A5210G	p.E1737G	.	.	136	7	58	1	.	229
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	124829344	124829344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCOR2	NM_006312	exon34	c.G4513A	p.E1505K	.	.	72	18	17	0	.	229
NEB	4703	bcgsc.ca	37	2	152536321	152536321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NEB	NM_004543	exon32	c.A3169G	p.K1057E	.	.	117	5	149	0	.	145
NEBL	10529	bcgsc.ca	37	10	21141541	21141541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NEBL	NM_006393	exon10	c.T941C	p.M314T	.	.	121	5	50	0	.	92
NF1	4763	bcgsc.ca	37	17	29664480	29664480	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NF1	NM_001042492	exon43	c.T6522C	p.A2174A	.	.	204	6	149	1	.	3353
NFATC4	4776	bcgsc.ca	37	14	24839457	24839457	+	Missense_Mutation	SNP	T	T	C	rs149076546		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NFATC4	NM_001198967	exon3	c.T1042C	p.S348P	.	.	68	10	58	6	T|1.000;C|0.000	92
NFE2	4778	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54687079	54687079	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NFE2	NM_001261461	exon4	c.C201A	p.P67P	.	.	1042	450	389	2	.	226
NFYA	4800	hgsc.bcm.edu	37	6	41065105	41065106	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NFYA	NM_002505	exon10	c.1000_1001insA	p.Q334fs	.	.	263	15	144	0	.	226
NIPBL	25836	bcgsc.ca	37	5	37006512	37006512	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NIPBL	NM_015384	exon17	c.A3909G	p.R1303R	.	.	155	5	162	0	.	293
NIPSNAP3B	55335	bcgsc.ca	37	9	107531301	107531301	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NIPSNAP3B	NM_018376	exon3	c.A429G	p.E143E	.	.	155	5	160	1	.	92
NLRP13	126204	bcgsc.ca	37	19	56407403	56407403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NLRP13	NM_176810	exon11	c.A3040G	p.N1014D	.	.	216	7	167	2	.	211
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55493601	55493601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NLRP2	NM_017852	exon6	c.A535T	p.S179C	.	.	240	124	104	0	.	120
NOX3	50508	bcgsc.ca	37	6	155764480	155764480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NOX3	NM_015718	exon5	c.T413C	p.L138P	.	.	165	6	86	0	.	91
NRCAM	4897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107807387	107807387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon27	c.G3445A	p.D1149N	.	.	188	19	81	1	.	156
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107836240	107836240	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon12	c.T1428C	p.C476C	.	.	359	177	223	0	.	156
NSD1	64324	bcgsc.ca	37	5	176710888	176710888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NSD1	NM_022455	exon20	c.A6110G	p.D2037G	.	.	124	6	101	0	.	188
NSUN5	55695	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	72722781	72722781	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NSUN5	NM_148956	exon1	c.C7T	p.L3L	.	.	280	148	102	3	.	90
NT5C2	22978	bcgsc.ca	37	10	104866413	104866413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NT5C2	NM_012229	exon5	c.A226G	p.R76G	.	.	113	5	139	0	.	90
NUAK2	81788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205272673	205272673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NUAK2	NM_030952	exon7	c.G1792C	p.D598H	.	.	215	85	66	0	.	391
NUDCD1	84955	bcgsc.ca	37	8	110255389	110255389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NUDCD1	NM_032869	exon10	c.A1601G	p.K534R	.	.	174	6	231	1	.	227
NUP155	9631	bcgsc.ca	37	5	37333679	37333679	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NUP155	NM_153485	exon13	c.A1404G	p.K468K	.	.	260	7	154	0	.	205
OLA1	29789	bcgsc.ca	37	2	175006726	175006726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OLA1	NM_013341	exon5	c.G376A	p.A126T	.	.	105	5	223	0	.	132
OMA1	115209	bcgsc.ca	37	1	59000005	59000005	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OMA1	NM_145243	exon5	c.730-2A>G	.	.	.	124	5	254	0	.	131
OPCML	4978	bcgsc.ca	37	11	132290173	132290173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OPCML	NM_002545	exon7	c.A952G	p.I318V	.	.	69	5	110	0	.	93
OPRK1	4986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54147486	54147486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OPRK1	NM_000912	exon3	c.C443G	p.T148S	.	.	225	64	99	0	.	70
OR10A2	341276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6891293	6891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR10A2	NM_001004460	exon1	c.C308T	p.A103V	.	.	265	114	134	0	.	113
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457698	107457698	+	Silent	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR13D1	NM_001004484	exon1	c.T996A	p.A332A	.	.	131	36	122	0	.	70
OR2A25	392138	bcgsc.ca	37	7	143772219	143772219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR2A25	NM_001004488	exon1	c.A907G	p.M303V	.	.	291	9	141	0	.	90
OR2L5	81466	bcgsc.ca	37	1	248186157	248186157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001258284	exon1	c.T908C	p.V303A	.	.	151	6	87	0	.	.
OR2W1	26692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29012335	29012335	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR2W1	NM_030903	exon1	c.T618A	p.I206I	.	.	257	77	226	0	.	93
OR4F15	390649	bcgsc.ca	37	15	102358696	102358696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR4F15	NM_001001674	exon1	c.T307C	p.F103L	.	.	193	6	245	0	.	68
OR4N3P	390539	bcgsc.ca	37	15	22414373	22414373	+	RNA	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	91	5	173	0	.	.
OR51M1	390059	broad.mit.edu	37	11	5410996	5410996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR51M1	NM_001004756	exon1	c.A368G	p.E123G	.	.	555	11	249	1	.	68
OR52E8	390079	bcgsc.ca	37	11	5878576	5878576	+	Silent	SNP	A	A	G	rs139706671	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR52E8	NM_001005168	exon1	c.T357C	p.I119I	.	.	104	17	122	2	A|0.999;G|0.001	70
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579471	55579471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR5L1	NM_001004738	exon1	c.T529G	p.F177V	.	.	842	114	552	1	.	73
OR7D2	162998	bcgsc.ca	37	19	9297248	9297248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR7D2	NM_175883	exon1	c.T791C	p.V264A	.	.	139	5	90	0	.	71
OTOF	9381	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	26725219	26725219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OTOF	NM_194248	exon7	c.C659A	p.S220X	.	.	188	22	37	1	.	135
PACRGL	133015	bcgsc.ca	37	4	20711381	20711381	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PACRGL	NM_001258345	exon5	c.T351C	p.L117L	.	.	51	4	133	0	.	68
PALMD	54873	bcgsc.ca	37	1	100154838	100154838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PALMD	NM_017734	exon7	c.A1022G	p.H341R	.	.	80	5	60	0	.	71
PAPD4	167153	bcgsc.ca	37	5	78975448	78975448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PAPD4	NM_173797	exon14	c.A1255G	p.R419G	.	.	107	5	122	1	.	69
PAPSS2	9060	bcgsc.ca	37	10	89487220	89487220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PAPSS2	NM_001015880	exon9	c.A1060G	p.T354A	.	.	75	5	101	0	.	493
PCDH18	54510	bcgsc.ca	37	4	138452865	138452865	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCDH18	NM_019035	exon1	c.A378G	p.E126E	.	.	95	4	142	0	.	185
PCDH18	54510	broad.mit.edu	37	4	138449660	138449660	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCDH18	NM_019035	exon3	c.G2712A	p.L904L	.	.	151	5	272	0	.	185
PCDH20	64881	bcgsc.ca	37	13	61989228	61989228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCDH20	NM_022843	exon1	c.T64C	p.W22R	.	.	95	5	48	0	.	581
PCDHB11	56125	bcgsc.ca	37	5	140580653	140580653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCDHB11	NM_018931	exon1	c.A1306G	p.N436D	.	.	218	6	129	0	.	96
PCDHGA7	56108	bcgsc.ca	37	5	140763330	140763330	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_032087	exon1	c.T864C	p.L288L	.	.	95	4	61	0	.	.
PCLO	27445	bcgsc.ca	37	7	82387954	82387954	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCLO	NM_033026	exon25	c.G15366A	p.V5122V	.	.	65	4	64	0	.	29
PCLO	27445	bcgsc.ca	37	7	82538274	82538274	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCLO	NM_014510	exon8	c.T13356C	p.R4452R	.	.	106	5	139	0	.	29
PCNT	5116	bcgsc.ca	37	21	47817408	47817408	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCNT	NM_006031	exon22	c.T4446C	p.D1482D	.	.	88	4	56	0	.	141
PCNX	22990	bcgsc.ca	37	14	71435801	71435801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCNX	NM_014982	exon5	c.T578C	p.L193P	.	.	77	4	146	1	.	91
PCSK1	5122	bcgsc.ca	37	5	95764945	95764945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCSK1	NM_000439	exon2	c.T257C	p.I86T	.	.	86	4	227	1	.	92
PCYT1B	9468	bcgsc.ca	37	X	24637169	24637169	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PCYT1B	NM_001163265	exon2	c.A150G	p.E50E	.	.	210	6	98	0	.	130
PDE11A	50940	bcgsc.ca	37	2	178936283	178936283	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PDE11A	NM_016953	exon1	c.A882G	p.G294G	.	.	243	8	157	3	.	93
PDE3B	5140	bcgsc.ca	37	11	14852316	14852316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PDE3B	NM_000922	exon8	c.A1880G	p.K627R	.	.	254	7	488	3	.	90
PDS5A	23244	bcgsc.ca	37	4	39902115	39902115	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001100399	exon14	c.A1512G	p.E504E	.	.	68	4	47	0	.	.
PGAP1	80055	bcgsc.ca	37	2	197750166	197750166	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PGAP1	NM_024989	exon12	c.A1254G	p.E418E	.	.	119	6	584	0	.	93
PGM2L1	283209	bcgsc.ca	37	11	74054445	74054445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PGM2L1	NM_173582	exon10	c.T1235C	p.F412S	.	.	60	4	113	0	.	91
PHIP	55023	bcgsc.ca	37	6	79671419	79671419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PHIP	NM_017934	exon31	c.A3644G	p.N1215S	.	.	107	5	253	0	.	579
PHLDB2	90102	bcgsc.ca	37	3	111632173	111632173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PHLDB2	NM_001134437	exon4	c.A1424G	p.Q475R	.	.	135	5	100	1	.	96
PIBF1	10464	ucsc.edu;bcgsc.ca	37	13	73369662	73369662	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PIBF1	NM_006346	exon4	c.T519C	p.P173P	.	.	44	4	253	0	.	136
PIGX	54965	bcgsc.ca	37	3	196443782	196443782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PIGX	NM_017861	exon2	c.G166A	p.G56S	.	.	90	5	96	0	.	90
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6360967	6360970	+	Frame_Shift_Del	DEL	AGGC	AGGC	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	AGGC	AGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PITPNM3	NM_031220	exon19	c.2563_2566del	p.855_856del	.	.	55	41	52	0	.	228
PIWIL4	143689	bcgsc.ca	37	11	94310600	94310600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PIWIL4	NM_152431	exon4	c.A455G	p.N152S	.	.	78	4	121	0	.	91
PKD1	5310	bcgsc.ca	37	16	2139744	2139744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKD1	NM_001009944	exon46	c.A12896G	p.H4299R	.	.	76	4	48	1	.	91
PKHD1	5314	bcgsc.ca	37	6	51523945	51523945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKHD1	NM_138694	exon61	c.A10979G	p.K3660R	.	.	80	4	93	0	.	603
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131476850	131476850	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKN3	NM_013355	exon12	c.G1491A	p.L497L	.	.	275	111	89	0	.	521
PKP4	8502	bcgsc.ca	37	2	159488379	159488379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKP4	NM_001005476	exon8	c.C1268T	p.P423L	.	.	116	7	63	0	.	97
PLA2R1	22925	bcgsc.ca	37	2	160803974	160803974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLA2R1	NM_001195641	exon26	c.A3806G	p.D1269G	.	.	63	4	149	0	.	93
PLCB3	5331	bcgsc.ca	37	11	64026685	64026685	+	Silent	SNP	C	C	T	rs28395882	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCB3	NM_000932	exon13	c.C1494T	p.S498S	.	.	13	12	7	0	C|0.817;T|0.183	228
PLCB4	5332	bcgsc.ca	37	20	9453482	9453482	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCB4	NM_001172646	exon36	c.A3396G	p.E1132E	.	.	62	5	243	2	.	274
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	39792450	39792451	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCG1	NM_182811	exon10	c.987_988insT	p.Y329fs	.	.	351	139	112	0	.	911
PLCL1	5334	bcgsc.ca	37	2	198950451	198950451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCL1	NM_006226	exon2	c.A2210G	p.K737R	.	.	78	4	102	0	.	228
PLEKHG4	25894	bcgsc.ca	37	16	67320755	67320755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLEKHG4	NM_001129728	exon17	c.T2858C	p.L953P	.	.	142	5	43	0	.	92
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142405170	142405170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLS1	NM_001172312	exon9	c.A933T	p.K311N	.	.	116	32	87	0	.	91
PMM1	5372	bcgsc.ca	37	22	41982131	41982131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PMM1	NM_002676	exon2	c.G154A	p.G52S	.	.	54	5	36	0	.	91
PMP2	5375	bcgsc.ca	37	8	82359561	82359561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PMP2	NM_002677	exon1	c.A61G	p.M21V	.	.	151	5	91	0	.	90
PNPLA8	50640	bcgsc.ca	37	7	108155860	108155860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PNPLA8	NM_001256008	exon2	c.A76G	p.S26G	.	.	225	7	177	0	.	135
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	108155899	108155899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PNPLA8	NM_001256008	exon2	c.C37T	p.L13F	.	.	82	43	87	0	.	135
POLQ	10721	bcgsc.ca	37	3	121190900	121190900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	POLQ	NM_199420	exon22	c.T6655C	p.C2219R	.	.	92	5	116	0	.	664
PON1	5444	bcgsc.ca	37	7	94935676	94935676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PON1	NM_000446	exon7	c.A701G	p.Y234C	.	.	72	4	48	0	.	91
POTEH	23784	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16287729	16287729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	POTEH	NM_001136213	exon1	c.G157T	p.A53S	.	.	1087	149	399	4	.	1
PPAPDC1B	84513	broad.mit.edu;bcgsc.ca	37	8	38124797	38124797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_032483	exon5	c.G451A	p.G151R	.	.	317	7	106	0	.	.
PPARGC1B	133522	bcgsc.ca	37	5	149212482	149212482	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PPARGC1B	NM_133263	exon5	c.A846G	p.E282E	.	.	159	5	102	0	.	186
PPEF2	5470	bcgsc.ca	37	4	76797506	76797506	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PPEF2	NM_006239	exon11	c.C1254A	p.R418R	.	.	128	7	65	0	.	228
PPP1R36	145376	bcgsc.ca	37	14	65031524	65031524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_172365	exon4	c.T238C	p.F80L	.	.	86	5	88	0	.	.
PPP2R5D	5528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42978962	42978962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PPP2R5D	NM_006245	exon16	c.A1747C	p.K583Q	.	.	222	114	98	1	.	1082
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3342300	3342300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRDM16	NM_022114	exon13	c.A3095T	p.H1032L	.	.	114	38	44	0	.	660
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68934295	68934295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PREX2	NM_025170	exon4	c.G361C	p.E121Q	.	.	43	16	75	0	.	390
PRKG2	5593	bcgsc.ca	37	4	82031617	82031617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRKG2	NM_006259	exon14	c.A1925G	p.E642G	.	.	53	4	92	0	.	524
PRMT10	90826	bcgsc.ca	37	4	148589750	148589750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRMT10	NM_138364	exon6	c.C893T	p.P298L	.	.	86	4	146	0	.	91
PRPF39	55015	ucsc.edu;bcgsc.ca	37	14	45578823	45578823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRPF39	NM_017922	exon8	c.A1016G	p.K339R	.	.	38	4	172	1	.	70
PRPF6	24148	bcgsc.ca	37	20	62641573	62641573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRPF6	NM_012469	exon10	c.T1207C	p.S403P	.	.	336	9	86	0	.	70
PRRC1	133619	bcgsc.ca	37	5	126862389	126862389	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRRC1	NM_130809	exon4	c.T573C	p.T191T	.	.	74	4	109	0	.	68
PRRC2B	84726	bcgsc.ca	37	9	134350655	134350655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRRC2B	NM_013318	exon15	c.A3139G	p.N1047D	.	.	193	7	68	0	.	24
PRRG4	79056	bcgsc.ca	37	11	32858303	32858303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRRG4	NM_024081	exon3	c.A203G	p.E68G	.	.	195	6	186	0	.	90
PRTG	283659	broad.mit.edu;bcgsc.ca	37	15	56032680	56032680	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRTG	NM_173814	exon2	c.A297G	p.E99E	.	.	349	10	279	0	.	92
PSAP	5660	bcgsc.ca	37	10	73579639	73579639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PSAP	NM_001042465	exon11	c.T1033C	p.F345L	.	.	162	6	91	0	.	91
PTCHD2	57540	bcgsc.ca	37	1	11589926	11589926	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PTCHD2	NM_020780	exon15	c.A3012G	p.L1004L	.	.	211	7	85	0	.	209
PTPN14	5784	bcgsc.ca	37	1	214537892	214537892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PTPN14	NM_005401	exon18	c.T3398C	p.L1133P	.	.	189	7	69	0	.	290
PTPRQ	374462	bcgsc.ca	37	12	81007469	81007469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001145026	exon26	c.A4501G	p.N1501D	.	.	50	4	155	0	.	.
PVRL3	25945	ucsc.edu;bcgsc.ca	37	3	110863842	110863842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PVRL3	NM_001243288	exon6	c.T1097C	p.L366P	.	.	31	4	26	0	.	92
QSOX2	169714	hgsc.bcm.edu	37	9	139108510	139108511	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	QSOX2	NM_181701	exon9	c.1145_1146insG	p.A382fs	.	.	118	12	33	0	.	91
RAB12	201475	bcgsc.ca	37	18	8638193	8638193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RAB12	NM_001025300	exon6	c.C668T	p.S223L	.	.	134	6	87	0	.	68
RAB34	83871	bcgsc.ca	37	17	27042140	27042140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RAB34	NM_001142625	exon9	c.A688G	p.T230A	.	.	157	6	59	0	.	227
RAB3GAP2	25782	bcgsc.ca	37	1	220338083	220338083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RAB3GAP2	NM_012414	exon27	c.T3146C	p.V1049A	.	.	181	7	233	2	.	90
RABEP1	9135	bcgsc.ca	37	17	5253868	5253868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RABEP1	NM_004703	exon7	c.A907G	p.I303V	.	.	103	6	76	1	.	659
RAI14	26064	hgsc.bcm.edu	37	5	34826481	34826482	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RAI14	NM_001145525	exon18	c.2705_2706insC	p.N902fs	.	.	296	17	86	0	.	91
RAI2	10742	bcgsc.ca	37	X	17819372	17819372	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RAI2	NM_001172739	exon3	c.T759C	p.P253P	.	.	249	8	89	0	.	131
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170610173	170610173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RANBP17	NM_022897	exon17	c.A1868G	p.Y623C	.	.	56	44	288	0	.	524
RB1	5925	bcgsc.ca	37	13	49039155	49039155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RB1	NM_000321	exon22	c.A2233G	p.K745E	.	.	87	6	203	0	.	3784
RBM8A	9939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145508934	145508934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RBM8A	NM_005105	exon5	c.T361C	p.Y121H	.	.	483	184	215	0	.	90
RCC1	1104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28863318	28863318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RCC1	NM_001048194	exon10	c.G1090A	p.E364K	.	.	264	149	97	0	.	228
RGS14	10636	bcgsc.ca	37	5	176794460	176794460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RGS14	NM_006480	exon6	c.T529C	p.S177P	.	.	281	24	120	10	.	226
RGS21	431704	bcgsc.ca	37	1	192335112	192335112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RGS21	NM_001039152	exon5	c.A317G	p.K106R	.	.	166	5	284	0	.	92
RHOT1	55288	bcgsc.ca	37	17	30535215	30535215	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RHOT1	NM_001033568	exon18	c.T1626C	p.P542P	.	.	211	6	153	0	.	93
RHOXF1	158800	bcgsc.ca	37	X	119243196	119243196	+	Missense_Mutation	SNP	T	T	C	rs144256540	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RHOXF1	NM_139282	exon3	c.A509G	p.E170G	.	.	218	7	50	0	T|1.000;A|0.000	130
RIMBP2	23504	broad.mit.edu	37	12	130926932	130926932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RIMBP2	NM_015347	exon8	c.T914C	p.L305P	.	.	1039	15	374	0	.	142
RNF146	81847	bcgsc.ca	37	6	127608625	127608625	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RNF146	NM_001242850	exon3	c.A867G	p.E289E	.	.	49	4	75	0	.	226
RNF213	57674	broad.mit.edu	37	17	78332259	78332259	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RNF213	NM_001256071	exon37	c.T11034C	p.P3678P	.	.	413	8	174	0	.	577
RNR2	6053	broad.mit.edu	37	MT	2643	2643	+	RNA	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	130	11	132	0	.	.
RNU6-71	100873774	bcgsc.ca	37	6	56469051	56469051	+	RNA	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	60	4	179	0	.	.
ROBO1	6091	bcgsc.ca	37	3	78796022	78796022	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ROBO1	NM_002941	exon5	c.T528C	p.P176P	.	.	131	6	102	0	.	67
RPS4Y2	140032	bcgsc.ca	37	Y	22942882	22942882	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001039567	exon7	c.A756G	p.R252R	.	.	78	6	123	1	.	.
RPS6KA5	9252	bcgsc.ca	37	14	91341669	91341669	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RPS6KA5	NM_004755	exon15	c.T1872C	p.S624S	.	.	131	5	133	0	.	979
RTF1	23168	broad.mit.edu;bcgsc.ca	37	15	41767797	41767797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RTF1	NM_015138	exon10	c.A1361G	p.K454R	.	.	147	7	154	0	.	92
RTTN	25914	bcgsc.ca	37	18	67806944	67806944	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RTTN	NM_173630	exon21	c.A2679G	p.E893E	.	.	75	4	139	1	.	141
RUSC1-AS1	284618	ucsc.edu;mdanderson.org	37	1	155291138	155291138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001039517	exon2	c.T142C	p.S48P	.	.	642	100	206	0	.	.
RXRG	6258	bcgsc.ca	37	1	165378863	165378863	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RXRG	NM_006917	exon7	c.T978C	p.L326L	.	.	95	4	57	0	.	186
RYR2	6262	bcgsc.ca	37	1	237780782	237780782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RYR2	NM_001035	exon38	c.A5912G	p.E1971G	.	.	142	5	81	0	.	158
SAMD3	154075	bcgsc.ca	37	6	130536412	130536412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SAMD3	NM_001017373	exon3	c.A7G	p.T3A	.	.	79	4	74	0	.	91
SBF2	81846	bcgsc.ca	37	11	9985392	9985392	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SBF2	NM_030962	exon15	c.T1638C	p.S546S	.	.	69	4	69	0	.	93
SBNO1	55206	bcgsc.ca	37	12	123798252	123798252	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SBNO1	NM_001167856	exon23	c.T3135C	p.A1045A	.	.	52	4	72	0	.	292
SBSN	374897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36019030	36019030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SBSN	NM_001166034	exon1	c.G154T	p.D52Y	.	.	375	209	172	1	.	91
SCGN	10590	bcgsc.ca	37	6	25653614	25653614	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SCGN	NM_006998	exon2	c.A87G	p.K29K	.	.	26	3	74	0	.	93
SCN1A	6323	bcgsc.ca	37	2	166892930	166892930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SCN1A	NM_001165963	exon16	c.G3057A	p.M1019I	.	.	77	4	160	0	.	147
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52056826	52056826	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SCN8A	NM_014191	exon2	c.C225T	p.G75G	.	.	254	123	151	0	.	29
SECISBP2L	9728	bcgsc.ca	37	15	49320668	49320668	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SECISBP2L	NM_001193489	exon5	c.T876C	p.P292P	.	.	80	5	97	1	.	136
SEMA3G	56920	bcgsc.ca	37	3	52476900	52476900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SEMA3G	NM_020163	exon2	c.G139T	p.A47S	.	.	85	4	40	0	.	70
SEMA4B	10509	bcgsc.ca	37	15	90771576	90771576	+	Missense_Mutation	SNP	C	C	T	rs201550724		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SEMA4B	NM_020210	exon15	c.C2215T	p.R739W	.	.	181	6	122	0	C|0.999;T|0.000	272
SEPT2	4735	broad.mit.edu	37	2	242277150	242277150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SEPT2	NM_001008491	exon8	c.T539C	p.V180A	.	.	191	5	245	2	.	68
SERPINB12	89777	bcgsc.ca	37	18	61223540	61223540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SERPINB12	NM_080474	exon1	c.A148G	p.S50G	.	.	158	6	167	0	.	227
SESN1	27244	bcgsc.ca	37	6	109323490	109323490	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SESN1	NM_014454	exon2	c.A336G	p.P112P	.	.	219	6	111	0	.	227
SETD2	29072	bcgsc.ca	37	3	47165208	47165208	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SETD2	NM_014159	exon3	c.T918C	p.G306G	.	.	195	6	251	1	.	1273
SF3B1	23451	bcgsc.ca	37	2	198273176	198273176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SF3B1	NM_012433	exon8	c.A1034G	p.Q345R	.	.	189	6	251	0	.	140
SFMBT2	57713	bcgsc.ca	37	10	7290560	7290560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SFMBT2	NM_001029880	exon8	c.A922G	p.T308A	.	.	135	5	73	0	.	141
SGPL1	8879	bcgsc.ca	37	10	72635234	72635234	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SGPL1	NM_003901	exon13	c.T1374C	p.F458F	.	.	137	5	107	1	.	226
SGSM1	129049	ucsc.edu;bcgsc.ca	37	22	25294176	25294176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SGSM1	NM_001039948	exon20	c.G2425A	p.G809S	.	.	40	4	41	0	.	27
SH3BP4	23677	bcgsc.ca	37	2	235949559	235949559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SH3BP4	NM_014521	exon4	c.A146G	p.D49G	.	.	194	6	158	0	.	94
SH3PXD2A	9644	bcgsc.ca	37	10	105362075	105362075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SH3PXD2A	NM_014631	exon14	c.A2816G	p.K939R	.	.	136	6	71	0	.	226
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	148411195	148411195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SH3TC2	NM_024577	exon9	c.G1057T	p.G353X	.	.	153	131	103	0	.	92
SHANK3	85358	bcgsc.ca	37	22	51150056	51150056	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SHANK3	NM_033517	exon18	c.A2082G	p.R694R	.	.	134	5	80	0	.	69
SHC4	399694	bcgsc.ca	37	15	49127154	49127154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SHC4	NM_203349	exon11	c.A1549G	p.I517V	.	.	87	4	96	0	.	95
SHFM1	7979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96324155	96324155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SHFM1	NM_006304	exon2	c.A125C	p.N42T	.	.	147	17	143	0	.	227
SHROOM4	57477	bcgsc.ca	37	X	50350731	50350731	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SHROOM4	NM_020717	exon6	c.G3411A	p.E1137E	.	.	68	4	38	0	.	131
SI	6476	bcgsc.ca	37	3	164748520	164748520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SI	NM_001041	exon25	c.C2872T	p.R958C	.	.	111	5	436	0	.	104
SIK3	23387	bcgsc.ca	37	11	116767994	116767994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SIK3	NM_025164	exon5	c.T482C	p.L161P	.	.	75	4	92	0	.	919
SLC12A3	6559	bcgsc.ca	37	16	56906624	56906624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC12A3	NM_001126108	exon8	c.T1021C	p.F341L	.	.	303	9	84	0	.	155
SLC15A1	6564	bcgsc.ca	37	13	99376195	99376195	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC15A1	NM_005073	exon5	c.T336C	p.D112D	.	.	142	6	117	0	.	91
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38347844	38347844	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC22A14	NM_004803	exon1	c.C327T	p.H109H	.	.	273	20	115	0	.	90
SLC24A4	123041	bcgsc.ca	37	14	92920351	92920351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC24A4	NM_153646	exon11	c.A988G	p.I330V	.	.	182	6	138	0	.	93
SLC25A18	83733	bcgsc.ca	37	22	18063884	18063884	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC25A18	NM_031481	exon4	c.T102C	p.T34T	.	.	80	4	95	0	.	90
SLC25A44	9673	broad.mit.edu	37	1	156169843	156169843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC25A44	NM_014655	exon2	c.G205A	p.G69S	.	.	555	9	159	0	.	91
SLC26A7	115111	bcgsc.ca	37	8	92364086	92364086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC26A7	NM_134266	exon10	c.A1189G	p.I397V	.	.	203	6	286	1	.	92
SLC4A8	9498	bcgsc.ca	37	12	51899676	51899676	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC4A8	NM_001039960	exon24	c.A3231G	p.K1077K	.	.	144	6	129	1	.	95
SLC5A1	6523	bcgsc.ca	37	22	32495304	32495304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC5A1	NM_000343	exon12	c.T1415C	p.L472P	.	.	191	9	121	1	.	91
SLC7A13	157724	ucsc.edu;bcgsc.ca	37	8	87226761	87226761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC7A13	NM_138817	exon4	c.G1294A	p.G432R	.	.	34	4	59	0	.	90
SLC7A4	6545	bcgsc.ca	37	22	21383645	21383645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC7A4	NM_004173	exon4	c.T1712C	p.F571S	.	.	54	4	47	0	.	279
SLC8A1	6546	bcgsc.ca	37	2	40397480	40397480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC8A1	NM_021097	exon6	c.T1979C	p.V660A	.	.	174	6	82	0	.	93
SLC9A7P1	121456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	98850355	98850355	+	RNA	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	259	56	91	0	.	.
SLIT3	6586	bcgsc.ca	37	5	168175375	168175375	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLIT3	NM_001271946	exon20	c.A2202G	p.T734T	.	.	106	6	56	0	.	95
SMCHD1	23347	bcgsc.ca	37	18	2760662	2760662	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SMCHD1	NM_015295	exon35	c.T4359C	p.I1453I	.	.	105	5	381	3	.	46
SNAP91	9892	bcgsc.ca	37	6	84284741	84284741	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SNAP91	NM_001242792	exon25	c.A2430G	p.P810P	.	.	77	6	115	0	.	23
SNX32	254122	bcgsc.ca	37	11	65617737	65617737	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SNX32	NM_152760	exon4	c.G369T	p.L123L	.	.	58	4	27	0	.	68
SOBP	55084	bcgsc.ca	37	6	107824869	107824869	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SOBP	NM_018013	exon2	c.A105G	p.A35A	.	.	173	6	106	0	.	91
SOGA2	23255	bcgsc.ca	37	18	8819012	8819012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_015210	exon13	c.A2911G	p.K971E	.	.	63	4	49	0	.	.
SORBS1	10580	bcgsc.ca	37	10	97144042	97144042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SORBS1	NM_001034955	exon14	c.A1427G	p.D476G	.	.	82	5	98	0	.	155
SP100	6672	bcgsc.ca	37	2	231406684	231406684	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SP100	NM_001080391	exon28	c.C2481T	p.Y827Y	.	.	76	4	111	0	.	94
SPAG17	200162	bcgsc.ca	37	1	118642240	118642240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SPAG17	NM_206996	exon6	c.T818C	p.L273P	.	.	146	6	173	0	.	158
SPATA31D1	389763	broad.mit.edu	37	9	84609341	84609341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001001670	exon4	c.A3956G	p.K1319R	.	.	203	5	107	0	.	.
SPATA31D5P	347127	bcgsc.ca	37	9	84532721	84532721	+	RNA	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	117	5	133	0	.	.
SPATA31E1	286234	bcgsc.ca	37	9	90499518	90499518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_178828	exon3	c.T377C	p.L126P	.	.	259	7	97	1	.	.
SPEN	23013	bcgsc.ca	37	1	16255788	16255788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SPEN	NM_015001	exon11	c.A3053G	p.K1018R	.	.	244	6	115	0	.	298
SPINK8	646424	bcgsc.ca	37	3	48351404	48351404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001080525	exon4	c.A272G	p.D91G	.	.	117	5	698	1	.	.
SRGAP3	9901	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9055115	9055115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRGAP3	NM_014850	exon17	c.G2024A	p.C675Y	.	.	279	98	318	0	.	344
SRM	6723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	11119332	11119332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRM	NM_003132	exon2	c.C238T	p.Q80X	.	.	337	95	98	0	.	90
STAP1	26228	bcgsc.ca	37	4	68449405	68449405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STAP1	NM_012108	exon6	c.T644C	p.I215T	.	.	140	5	205	0	.	68
STK24	8428	bcgsc.ca	37	13	99127080	99127080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STK24	NM_003576	exon5	c.T628C	p.S210P	.	.	145	5	85	0	.	979
STK38	11329	bcgsc.ca	37	6	36492118	36492118	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STK38	NM_007271	exon4	c.G306A	p.E102E	.	.	89	5	104	0	.	982
STON1	11037	bcgsc.ca	37	2	48808631	48808631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STON1	NM_001198595	exon3	c.A859G	p.N287D	.	.	473	10	197	3	.	91
STS	412	ucsc.edu	37	X	7268055	7268055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STS	NM_000351	exon10	c.T1505C	p.L502P	.	.	45	4	46	0	.	130
STXBP2	6813	bcgsc.ca	37	19	7705864	7705864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STXBP2	NM_001272034	exon6	c.T437C	p.L146P	.	.	133	6	56	1	.	91
STXBP5	134957	bcgsc.ca	37	6	147694923	147694923	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	STXBP5	NM_001127715	exon26	c.A3138G	p.G1046G	.	.	68	4	135	0	.	90
SUPV3L1	6832	bcgsc.ca	37	10	70960080	70960080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SUPV3L1	NM_003171	exon11	c.T1343C	p.I448T	.	.	82	4	61	0	.	227
SUV420H2	84787	bcgsc.ca	37	19	55857699	55857699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SUV420H2	NM_032701	exon7	c.A689G	p.E230G	.	.	78	4	44	2	.	226
SYCP1	6847	bcgsc.ca	37	1	115417133	115417133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SYCP1	NM_003176	exon9	c.A605G	p.Y202C	.	.	124	5	236	0	.	91
SYNE2	23224	bcgsc.ca	37	14	64408795	64408795	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SYNE2	NM_182914	exon6	c.T342C	p.T114T	.	.	71	4	131	0	.	164
SYNE2	23224	bcgsc.ca	37	14	64596894	64596894	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SYNE2	NM_182914	exon76	c.A14268G	p.E4756E	.	.	96	4	96	0	.	164
SYTL5	94122	bcgsc.ca	37	X	37981409	37981409	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SYTL5	NM_001163334	exon15	c.A1848G	p.K616K	.	.	154	6	171	0	.	131
TACC1	6867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	38678084	38678084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TACC1	NM_006283	exon3	c.G1322C	p.C441S	.	.	60	10	16	0	.	187
TACC3	10460	bcgsc.ca	37	4	1729800	1729800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TACC3	NM_006342	exon4	c.G671A	p.C224Y	.	.	53	7	30	0	.	91
TANC1	85461	bcgsc.ca	37	2	160027057	160027057	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TANC1	NM_033394	exon10	c.A1092G	p.P364P	.	.	148	6	175	0	.	92
TAOK2	9344	broad.mit.edu	37	16	29993055	29993055	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TAOK2	NM_004783	exon9	c.C729A	p.P243P	.	.	390	8	125	0	.	521
TAS1R2	80834	bcgsc.ca	37	1	19168300	19168300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TAS1R2	NM_152232	exon5	c.A1514G	p.K505R	.	.	159	5	71	4	.	93
TBC1D22B	55633	bcgsc.ca	37	6	37247161	37247161	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TBC1D22B	NM_017772	exon3	c.T195C	p.N65N	.	.	227	6	138	0	.	90
TDG	6996	bcgsc.ca	37	12	104378525	104378525	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TDG	NM_003211	exon8	c.793-2A>C	.	.	.	118	10	200	3	.	661
TDRD3	81550	bcgsc.ca	37	13	61102964	61102964	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TDRD3	NM_001146070	exon11	c.A1605G	p.K535K	.	.	105	5	273	0	.	516
TECPR2	9895	bcgsc.ca	37	14	102900813	102900813	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TECPR2	NM_001172631	exon9	c.A1659G	p.S553S	.	.	227	8	131	0	.	92
TENM1	10178	bcgsc.ca	37	X	123518105	123518105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001163278	exon30	c.A6676G	p.R2226G	.	.	141	6	83	0	.	.
TET1	80312	bcgsc.ca	37	10	70332525	70332525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TET1	NM_030625	exon2	c.A430G	p.I144V	.	.	117	5	69	0	.	663
TET1	80312	bcgsc.ca	37	10	70451493	70451493	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TET1	NM_030625	exon12	c.A6333G	p.T2111T	.	.	143	6	81	0	.	663
TFRC	7037	bcgsc.ca	37	3	195796347	195796347	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TFRC	NM_001128148	exon7	c.G780A	p.G260G	.	.	154	5	296	1	.	653
THSD7A	221981	ucsc.edu;bcgsc.ca	37	7	11416259	11416259	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	THSD7A	NM_015204	exon26	c.C4827T	p.Y1609Y	.	.	40	4	72	0	.	71
TIE1	7075	broad.mit.edu	37	1	43783615	43783615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TIE1	NM_005424	exon17	c.A2794G	p.S932G	.	.	230	6	102	2	.	1404
TIPIN	54962	bcgsc.ca	37	15	66629306	66629306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TIPIN	NM_017858	exon8	c.A896G	p.E299G	.	.	126	5	195	0	.	91
TLE6	79816	broad.mit.edu	37	19	2993547	2993547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLE6	NM_001143986	exon15	c.A1504G	p.S502G	.	.	464	9	174	0	.	91
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799406	38799406	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR1	NM_003263	exon4	c.G1047T	p.P349P	.	.	79	16	84	0	.	524
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12904609	12904609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR7	NM_016562	exon3	c.A982G	p.K328E	.	.	95	82	86	0	.	564
TMEM131	23505	bcgsc.ca	37	2	98543944	98543944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM131	NM_015348	exon2	c.T194C	p.V65A	.	.	131	5	571	0	.	74
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128899692	128899692	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM132C	NM_001136103	exon2	c.G501A	p.L167L	.	.	156	26	60	0	.	68
TMEM260	0	bcgsc.ca	37	14	57082686	57082686	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_017799	exon8	c.C882T	p.T294T	.	.	77	4	156	0	.	.
TMEM82	388595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16073479	16073479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM82	NM_001013641	exon5	c.T875A	p.L292H	.	.	400	114	159	0	.	90
TMPRSS11F	389208	ucsc.edu;bcgsc.ca	37	4	68935724	68935724	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMPRSS11F	NM_207407	exon6	c.T516C	p.P172P	.	.	34	4	158	0	.	91
TMPRSS13	84000	bcgsc.ca	37	11	117789491	117789491	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMPRSS13	NM_001206790	exon2	c.G84T	p.G28G	.	.	90	6	75	1	.	91
TMTC3	160418	bcgsc.ca	37	12	88586381	88586381	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMTC3	NM_181783	exon13	c.A1707G	p.R569R	.	.	88	4	197	1	.	91
TNKS	8658	bcgsc.ca	37	8	9623266	9623266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TNKS	NM_003747	exon24	c.A3512G	p.E1171G	.	.	228	8	115	1	.	660
TOX2	84969	bcgsc.ca	37	20	42683109	42683109	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TOX2	NM_001098798	exon5	c.T849C	p.G283G	.	.	229	7	102	1	.	91
TP63	8626	bcgsc.ca	37	3	189585661	189585661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TP63	NM_001114979	exon7	c.T922C	p.C308R	.	.	169	6	117	0	.	421
TPBG	7162	bcgsc.ca	37	6	83075483	83075483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TPBG	NM_001166392	exon2	c.G805A	p.A269T	.	.	68	4	50	0	.	514
TPP2	7174	bcgsc.ca	37	13	103301820	103301820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TPP2	NM_003291	exon23	c.A2936G	p.E979G	.	.	65	5	220	1	.	92
TPR	7175	bcgsc.ca	37	1	186331495	186331495	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TPR	NM_003292	exon7	c.A714G	p.E238E	.	.	183	6	235	0	.	228
TPR	7175	broad.mit.edu;bcgsc.ca	37	1	186330806	186330806	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TPR	NM_003292	exon9	c.A906G	p.E302E	.	.	351	8	344	0	.	228
TREML4	285852	bcgsc.ca	37	6	41197828	41197828	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TREML4	NM_198153	exon4	c.T474C	p.S158S	.	.	228	6	137	1	.	90
TRIM13	10206	bcgsc.ca	37	13	50587052	50587052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRIM13	NM_001007278	exon4	c.C985T	p.L329F	.	.	194	6	238	1	.	228
TRIML2	205860	bcgsc.ca	37	4	189022230	189022230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRIML2	NM_173553	exon3	c.A310G	p.M104V	.	.	152	5	159	0	.	90
TRIP11	9321	broad.mit.edu;bcgsc.ca	37	14	92472129	92472129	+	Missense_Mutation	SNP	T	T	C	rs112859736		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRIP11	NM_004239	exon11	c.A2191G	p.R731G	.	.	359	8	473	2	T|0.500;C|0.500	1400
TRMT61B	55006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29092901	29092901	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRMT61B	NM_017910	exon1	c.T243C	p.C81C	.	.	311	152	86	0	.	90
TRPA1	8989	bcgsc.ca	37	8	72952011	72952011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRPA1	NM_007332	exon18	c.A2083G	p.I695V	.	.	25	3	89	0	.	230
TRPC6	7225	bcgsc.ca	37	11	101353709	101353709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRPC6	NM_004621	exon5	c.T1481C	p.M494T	.	.	191	6	313	0	.	93
TRPC7	57113	bcgsc.ca	37	5	135651418	135651418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_020389	exon3	c.T830C	p.V277A	.	.	62	4	96	0	.	.
TRPM6	140803	bcgsc.ca	37	9	77415345	77415345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRPM6	NM_017662	exon17	c.A2063G	p.E688G	.	.	129	5	99	0	.	335
TRPV1	7442	bcgsc.ca	37	17	3494522	3494522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRPV1	NM_018727	exon3	c.T410C	p.L137P	.	.	78	5	45	0	.	23
TSNAXIP1	55815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67859123	67859123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TSNAXIP1	NM_018430	exon7	c.C600A	p.D200E	.	.	165	69	68	0	.	90
TSSK2	23617	bcgsc.ca	37	22	19118965	19118965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TSSK2	NM_053006	exon1	c.T53C	p.L18P	.	.	97	5	68	0	.	333
TTC28	23331	bcgsc.ca	37	22	28692233	28692233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001145418	exon5	c.A886G	p.N296D	.	.	67	4	130	0	.	.
TTC37	9652	bcgsc.ca	37	5	94864757	94864757	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTC37	NM_014639	exon12	c.A942G	p.E314E	.	.	206	8	275	0	.	94
TTC39A	22996	ucsc.edu	37	1	51776973	51776973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTC39A	NM_001144832	exon5	c.T388C	p.C130R	.	.	35	4	20	0	.	23
TTC8	123016	bcgsc.ca	37	14	89305894	89305894	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTC8	NM_144596	exon3	c.A243G	p.E81E	.	.	48	5	171	0	.	90
TTF2	8458	bcgsc.ca	37	1	117641505	117641505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTF2	NM_003594	exon22	c.A3320G	p.Q1107R	.	.	151	5	82	0	.	91
TTLL5	23093	bcgsc.ca	37	14	76368500	76368500	+	Silent	SNP	A	A	G	rs146101884		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTLL5	NM_015072	exon31	c.A3756G	p.E1252E	.	.	63	7	84	3	A|1.000;G|0.000	92
TTLL6	284076	bcgsc.ca	37	17	46867304	46867304	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTLL6	NM_001130918	exon10	c.T1389C	p.S463S	.	.	212	6	92	0	.	90
TTN	7273	bcgsc.ca	37	2	179406272	179406272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon350	c.T97532C	p.V32511A	.	.	57	4	123	0	.	636
TTN	7273	bcgsc.ca	37	2	179421719	179421719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon330	c.A88162G	p.T29388A	.	.	73	5	180	1	.	636
TTN	7273	bcgsc.ca	37	2	179469887	179469887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon280	c.T54017C	p.V18006A	.	.	85	5	264	0	.	636
TTN	7273	bcgsc.ca	37	2	179529382	179529382	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon167	c.A36201G	p.E12067E	.	.	56	4	130	0	.	636
TTN	7273	bcgsc.ca	37	2	179586601	179586601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon78	c.A22789G	p.M7597V	.	.	88	4	229	0	.	636
TTN	7273	bcgsc.ca	37	2	179587245	179587245	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon77	c.A22269G	p.R7423R	.	.	61	4	157	0	.	636
TTN	7273	ucsc.edu	37	2	179486632	179486632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TTN	NM_001267550	exon244	c.A45017G	p.D15006G	.	.	42	4	161	0	.	636
TXLNG2P	246126	bcgsc.ca	37	Y	21765754	21765754	+	RNA	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	34	4	70	0	.	.
UBE2K	3093	bcgsc.ca	37	4	39757327	39757327	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBE2K	NM_005339	exon4	c.G267A	p.G89G	.	.	124	5	184	0	.	23
UBE3C	9690	bcgsc.ca	37	7	157013415	157013415	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBE3C	NM_014671	exon15	c.T1947C	p.H649H	.	.	215	7	53	0	.	704
UBR2	23304	bcgsc.ca	37	6	42573533	42573533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBR2	NM_001184801	exon6	c.T737C	p.L246P	.	.	75	4	84	0	.	94
UBR2	23304	bcgsc.ca	37	6	42637888	42637888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBR2	NM_015255	exon35	c.A3940G	p.K1314E	.	.	129	5	81	0	.	94
UBR5	51366	bcgsc.ca	37	8	103312254	103312254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBR5	NM_015902	exon23	c.T3080C	p.V1027A	.	.	68	4	71	0	.	761
UBXN7	26043	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196134222	196134222	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBXN7	NM_015562	exon2	c.116delA	p.N39fs	.	.	284	93	201	0	.	71
UFL1	23376	bcgsc.ca	37	6	97000502	97000502	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_015323	exon18	c.A2130G	p.P710P	.	.	65	5	119	0	.	.
UFM1	51569	broad.mit.edu	37	13	38928390	38928390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UFM1	NM_016617	exon3	c.A74G	p.E25G	.	.	20	3	57	2	.	68
UGGT2	55757	bcgsc.ca	37	13	96555185	96555185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UGGT2	NM_020121	exon21	c.T2425C	p.F809L	.	.	81	4	184	2	.	92
UNC79	57578	bcgsc.ca	37	14	94069681	94069681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_020818	exon26	c.T3140C	p.V1047A	.	.	89	4	101	0	.	.
UROS	7390	bcgsc.ca	37	10	127500849	127500849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UROS	NM_000375	exon5	c.A253G	p.R85G	.	.	112	5	202	0	.	90
USP13	8975	bcgsc.ca	37	3	179483632	179483632	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP13	NM_003940	exon19	c.T2409C	p.S803S	.	.	153	5	83	0	.	659
USP19	10869	ucsc.edu	37	3	49153551	49153551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP19	NM_001199160	exon10	c.C1400T	p.S467F	.	.	189	9	76	4	.	663
USP37	57695	bcgsc.ca	37	2	219362493	219362493	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP37	NM_020935	exon13	c.A1245G	p.S415S	.	.	74	4	121	0	.	661
USP37	57695	bcgsc.ca	37	2	219362801	219362801	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP37	NM_020935	exon12	c.T1105C	p.L369L	.	.	51	4	93	0	.	661
USP40	55230	ucsc.edu;bcgsc.ca	37	2	234450954	234450954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP40	NM_018218	exon8	c.T1058C	p.I353T	.	.	37	4	84	0	.	455
USP45	85015	bcgsc.ca	37	6	99951676	99951676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP45	NM_001080481	exon5	c.A443G	p.D148G	.	.	80	4	133	0	.	637
USP47	55031	bcgsc.ca	37	11	11964334	11964334	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP47	NM_017944	exon19	c.A2562G	p.E854E	.	.	74	4	113	0	.	660
UTY	7404	bcgsc.ca	37	Y	15447636	15447636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UTY	NM_001258249	exon18	c.A2641G	p.S881G	.	.	172	6	183	0	.	136
VPS52	6293	bcgsc.ca	37	6	33235737	33235737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	VPS52	NM_022553	exon9	c.A838G	p.T280A	.	.	170	6	85	0	.	95
VPS54	51542	bcgsc.ca	37	2	64147061	64147061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	VPS54	NM_016516	exon15	c.C2120A	p.S707Y	.	.	190	6	302	0	.	90
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22126725	22126725	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	VWA3A	NM_173615	exon9	c.G747A	p.L249L	.	.	173	79	98	0	.	1
WARS	7453	bcgsc.ca	37	14	100803508	100803508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WARS	NM_004184	exon10	c.A1145G	p.D382G	.	.	125	5	93	0	.	153
WASF1	8936	bcgsc.ca	37	6	110434592	110434592	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WASF1	NM_001024935	exon4	c.T205C	p.L69L	.	.	166	5	223	0	.	90
WASF3	10810	bcgsc.ca	37	13	27241702	27241702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WASF3	NM_006646	exon5	c.T317C	p.V106A	.	.	198	6	193	3	.	91
WDFY4	57705	broad.mit.edu;bcgsc.ca	37	10	49984913	49984913	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDFY4	NM_020945	exon16	c.T2982C	p.T994T	.	.	204	8	56	0	.	22
WDR49	151790	ucsc.edu;bcgsc.ca	37	3	167223203	167223203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDR49	NM_178824	exon13	c.G1720A	p.V574I	.	.	23	4	122	0	.	155
WDR52	55779	bcgsc.ca	37	3	113114697	113114697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDR52	NM_001164496	exon15	c.A1790G	p.Q597R	.	.	60	5	106	0	.	90
WDR61	80349	bcgsc.ca	37	15	78580641	78580641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDR61	NM_025234	exon8	c.A646G	p.I216V	.	.	74	5	67	1	.	92
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38378936	38378936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_031951	exon6	c.A5258T	p.E1753V	.	.	359	121	329	0	.	.
WHSC1	7468	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1957858	1957858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WHSC1	NM_133335	exon15	c.G2824T	p.G942W	.	.	217	104	105	0	.	664
XPR1	9213	bcgsc.ca	37	1	180853147	180853147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	XPR1	NM_004736	exon15	c.A2036G	p.K679R	.	.	466	10	175	0	.	90
YIPF7	285525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44631480	44631480	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_182592	exon4	c.T438C	p.N146N	.	.	104	58	158	0	.	.
ZBED5	58486	bcgsc.ca	37	11	10876047	10876047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_021211	exon3	c.T446C	p.L149P	.	.	229	6	156	1	.	.
ZBTB17	7709	broad.mit.edu	37	1	16268644	16268644	+	Silent	SNP	C	C	T	rs147516539		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZBTB17	NM_003443	exon16	c.G2232A	p.L744L	.	.	342	9	135	0	C|0.999;T|0.001	90
ZC3H14	79882	bcgsc.ca	37	14	89063150	89063150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZC3H14	NM_001160104	exon10	c.A1352G	p.Q451R	.	.	78	4	88	0	.	93
ZCCHC6	79670	hgsc.bcm.edu	37	9	88937856	88937856	+	Missense_Mutation	SNP	T	T	C	rs75851694	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZCCHC6	NM_024617	exon13	c.A2809G	p.K937E	.	.	341	27	364	0	T|0.980;C|0.020	92
ZDHHC11	79844	hgsc.bcm.edu	37	5	837587	837587	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZDHHC11	NM_024786	exon6	c.A793T	p.K265X	.	.	1986	262	491	0	.	92
ZFAND5	7763	broad.mit.edu;bcgsc.ca	37	9	74975129	74975129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFAND5	NM_001102421	exon3	c.A160G	p.S54G	.	.	404	9	238	2	.	90
ZFHX3	463	mdanderson.org	37	16	72831382	72831382	+	Silent	SNP	T	T	C	rs112722798	bycluster;byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFHX3	NM_006885	exon9	c.A5199G	p.Q1733Q	.	.	376	54	112	0	T|0.999;C|0.001	72
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39898413	39898413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP36	NM_003407	exon2	c.G73T	p.V25L	.	.	72	18	24	0	.	227
ZFP82	284406	bcgsc.ca	37	19	36883895	36883895	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	ZFP82,upper_arm,malignant_melanoma,-2	ZFP82	NM_133466	exon5	c.T1347C	p.P449P	.	.	176	6	124	1	.	91
ZFP82	284406	bcgsc.ca	37	19	36884540	36884540	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP82	NM_133466	exon5	c.T702C	p.A234A	.	.	232	6	151	1	.	91
ZFP91	80829	bcgsc.ca	37	11	58379754	58379754	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP91	NM_053023	exon7	c.A861G	p.R287R	.	.	64	4	122	0	.	91
ZFP92	139735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152685756	152685756	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP92	NM_001136273	exon3	c.C231T	p.I77I	.	.	307	291	65	0	.	62
ZFYVE26	23503	bcgsc.ca	37	14	68235264	68235264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFYVE26	NM_015346	exon30	c.G5623A	p.V1875I	.	.	76	4	108	0	.	162
ZFYVE26	23503	bcgsc.ca	37	14	68242804	68242804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFYVE26	NM_015346	exon26	c.A4994G	p.E1665G	.	.	55	4	41	0	.	162
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68238928	68238928	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFYVE26	NM_015346	exon29	c.5321-1G>A	.	.	.	90	71	148	0	.	162
ZIK1	284307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58101688	58101688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZIK1	NM_001010879	exon4	c.G509T	p.W170L	.	.	147	48	83	0	.	91
ZMAT4	79698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	40683185	40683185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZMAT4	NM_024645	exon2	c.C11T	p.S4F	.	.	87	37	35	0	.	92
ZMIZ2	83637	broad.mit.edu	37	7	44807163	44807163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZMIZ2	NM_031449	exon19	c.C2704T	p.P902S	.	.	512	8	156	0	.	137
ZNF131	7690	broad.mit.edu	37	5	43161907	43161907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF131	NM_003432	exon6	c.T826C	p.Y276H	.	.	886	11	218	0	.	90
ZNF141	7700	bcgsc.ca	37	4	367087	367087	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF141	NM_003441	exon4	c.A861G	p.E287E	.	.	141	5	127	0	.	90
ZNF16	7564	bcgsc.ca	37	8	146156193	146156193	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF16	NM_006958	exon3	c.T1980C	p.A660A	.	.	241	7	126	0	.	95
ZNF197	10168	bcgsc.ca	37	3	44683756	44683756	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF197	NM_006991	exon6	c.T1134C	p.H378H	.	.	76	4	73	0	.	230
ZNF211	10520	bcgsc.ca	37	19	58152594	58152594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF211	NM_001265597	exon5	c.A935G	p.D312G	.	.	139	5	62	1	.	92
ZNF224	7767	bcgsc.ca	37	19	44611438	44611438	+	Silent	SNP	A	A	G	rs3208214		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF224	NM_013398	exon6	c.A1125G	p.K375K	.	.	173	6	82	0	.	92
ZNF226	7769	bcgsc.ca	37	19	44681527	44681527	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001032372	exon6	c.T2112C	p.C704C	.	.	175	6	102	0	.	.
ZNF292	23036	broad.mit.edu	37	6	87964653	87964653	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF292	NM_015021	exon8	c.T1306C	p.L436L	.	.	77	4	108	0	.	72
ZNF33A	7581	bcgsc.ca	37	10	38344177	38344177	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF33A	NM_006954	exon5	c.T1125C	p.H375H	.	.	213	8	201	0	.	93
ZNF415	55786	bcgsc.ca	37	19	53612404	53612404	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF415	NM_018355	exon4	c.A894G	p.K298K	.	.	144	6	80	0	.	91
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109687219	109687219	+	Silent	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF462	NM_021224	exon3	c.T1026G	p.S342S	.	.	197	35	54	0	.	95
ZNF565	147929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36673862	36673862	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF565	NM_001042474	exon5	c.G1006T	p.E336X	.	.	163	49	94	0	.	92
ZNF566	84924	broad.mit.edu	37	19	36940667	36940667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF566	NM_001145343	exon5	c.T472C	p.S158P	.	.	337	6	213	1	.	90
ZNF569	148266	broad.mit.edu	37	19	37904672	37904672	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF569	NM_152484	exon6	c.A888G	p.K296K	.	.	90	7	84	1	.	154
ZNF638	27332	bcgsc.ca	37	2	71650344	71650344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF638	NM_014497	exon22	c.A3700G	p.R1234G	.	.	127	5	105	0	.	94
ZNF658	26149	broad.mit.edu	37	9	40772753	40772753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF658	NM_033160	exon5	c.T2522C	p.L841P	.	.	754	10	511	2	.	45
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31072640	31072640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF668	NM_001172669	exon4	c.T1678A	p.S560T	.	.	147	28	51	0	.	585
ZNF695	57116	bcgsc.ca	37	1	247163363	247163363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001204221	exon2	c.T17C	p.F6S	.	.	306	7	86	0	.	.
ZNF717	100131827	bcgsc.ca	37	3	75832489	75832489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001128223	exon2	c.T25C	p.F9L	.	.	213	6	158	1	.	.
ZNF804A	91752	bcgsc.ca	37	2	185802206	185802206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF804A	NM_194250	exon4	c.A2083G	p.K695E	.	.	39	4	66	0	.	163
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57766858	57766858	+	Silent	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF831	NM_178457	exon1	c.A784C	p.R262R	.	.	125	17	34	0	.	126
ZNF880	400713	ucsc.edu	37	19	52888050	52888050	+	Missense_Mutation	SNP	A	A	G	rs76053634	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001145434	exon4	c.A1217G	p.Q406R	.	.	80	18	34	2	A|0.867;G|0.133	.
ZNF92	168374	bcgsc.ca	37	7	64864355	64864355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF92	NM_152626	exon4	c.A1328G	p.H443R	.	.	67	4	76	0	.	514
ZNF99	7652	broad.mit.edu	37	19	22940851	22940851	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF99	NM_001080409	exon4	c.C1860T	p.P620P	.	.	80	10	62	0	.	24
ZNF99	7652	broad.mit.edu	37	19	22940859	22940859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF99	NM_001080409	exon4	c.A1852G	p.K618E	.	.	71	4	63	0	.	24
ZSCAN12P1	221584	broad.mit.edu;bcgsc.ca	37	6	28060522	28060522	+	RNA	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	171	7	59	0	.	.
ZWILCH	55055	bcgsc.ca	37	15	66828387	66828387	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZWILCH	NM_017975	exon15	c.A1458G	p.E486E	.	.	52	4	192	0	.	91
ZYG11B	79699	bcgsc.ca	37	1	53236834	53236834	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZYG11B	NM_024646	exon3	c.A339G	p.T113T	.	.	173	5	94	0	.	94
ZFHX3	463	hgsc.bcm.edu	37	16	72831362	72831363	+	Missense_Mutation	DNP	TG	TG	GC	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	p.Q1740A	.	.	.	.	.	.	.	
ADRA1D	146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	4202228	4202229	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	p.A554N	.	.	.	.	.	.	.	
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu	37	3	57678508	57678509	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	.	.	.	.	.	.	.	
