Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	bcgsc.ca	37	12	9222382	9222382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	A2M	NM_000014	exon33	c.A4222G	p.T1408A	.	.	112	5	103	0	.	515
AARS	16	bcgsc.ca	37	16	70301702	70301702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AARS	NM_001605	exon9	c.T1082C	p.F361S	.	.	108	6	147	1	.	91
ABCA3	21	bcgsc.ca	37	16	2342201	2342201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ABCA3	NM_001089	exon19	c.A2453G	p.K818R	.	.	71	4	83	0	.	1015
ABCA4	24	bcgsc.ca	37	1	94520708	94520708	+	Missense_Mutation	SNP	A	A	G	rs61749435	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ABCA4	NM_000350	exon16	c.T2546C	p.V849A	.	.	75	4	80	0	A|0.994;G|0.006	162
ABCC1	4363	bcgsc.ca	37	16	16142009	16142009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ABCC1	NM_004996	exon10	c.T1229C	p.I410T	.	.	115	6	153	0	.	94
ACADVL	37	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7126517	7126517	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ACADVL	NM_001270447	exon12	c.G1212A	p.E404E	.	.	90	66	105	1	.	93
ACSS3	79611	bcgsc.ca	37	12	81536958	81536958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ACSS3	NM_024560	exon5	c.T853C	p.C285R	.	.	141	5	122	0	.	71
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	9676045	9676045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ADAM17	NM_003183	exon4	c.C368A	p.P123H	.	.	108	8	123	0	.	659
AFG3L2	10939	bcgsc.ca	37	18	12366972	12366972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AFG3L2	NM_006796	exon5	c.A544G	p.K182E	.	.	95	4	91	0	.	90
AGPAT1	10554	broad.mit.edu;bcgsc.ca	37	6	32138749	32138749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AGPAT1	NM_006411	exon3	c.T299C	p.V100A	.	.	94	4	61	0	.	90
AHNAK2	113146	bcgsc.ca	37	14	105407453	105407453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AHNAK2	NM_138420	exon7	c.T14335C	p.F4779L	.	.	91	4	71	0	.	47
ALDH18A1	5832	bcgsc.ca	37	10	97373772	97373772	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ALDH18A1	NM_002860	exon14	c.T1752C	p.C584C	.	.	158	5	138	0	.	117
ALMS1	7840	bcgsc.ca	37	2	73651568	73651568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ALMS1	NM_015120	exon5	c.G775T	p.D259Y	.	.	92	4	87	0	.	142
ALMS1	7840	broad.mit.edu;bcgsc.ca	37	2	73826588	73826588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ALMS1	NM_015120	exon17	c.T11605C	p.S3869P	.	.	236	7	187	0	.	142
ALPK3	57538	ucsc.edu	37	15	85384099	85384099	+	Missense_Mutation	SNP	G	G	A	rs150733634	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ALPK3	NM_020778	exon5	c.G2195A	p.R732Q	.	.	44	4	26	0	G|0.999;A|0.001	337
AMER1	139285	bcgsc.ca	37	X	63410975	63410975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_152424	exon2	c.A2192G	p.D731G	.	.	82	4	75	0	.	.
ANAPC5	51433	bcgsc.ca	37	12	121773474	121773474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ANAPC5	NM_016237	exon7	c.C812A	p.T271K	.	.	91	4	100	0	.	290
ANGPTL7	10218	bcgsc.ca	37	1	11252400	11252400	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ANGPTL7	NM_021146	exon2	c.T450C	p.D150D	.	.	65	4	147	0	.	90
ANKRD20A12P	100874392	broad.mit.edu	37	1	142700195	142700195	+	RNA	SNP	G	G	C	rs78222956	byfrequency;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	61	11	53	0	G|0.750;A|0.250	.
ANKRD29	147463	bcgsc.ca	37	18	21209858	21209858	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ANKRD29	NM_173505	exon6	c.T487C	p.L163L	.	.	67	4	45	0	.	156
AOX1	316	bcgsc.ca	37	2	201473712	201473712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AOX1	NM_001159	exon11	c.A913G	p.T305A	.	.	230	6	174	0	.	96
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2120931	2120931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	AP3D1	NM_001261826	exon14	c.A1411C	p.S471R	.	.	66	24	38	0	.	90
APOL6	80830	bcgsc.ca	37	22	36054787	36054787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	APOL6	NM_030641	exon3	c.A176G	p.K59R	.	.	83	4	64	0	.	90
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141036086	141036086	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARAP3	NM_022481	exon27	c.G3774T	p.L1258L	.	.	92	35	86	0	.	291
ARHGDIB	397	bcgsc.ca	37	12	15095541	15095541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARHGDIB	NM_001175	exon6	c.A521G	p.N174S	.	.	94	4	87	0	.	90
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27107084	27107085	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARID1A	NM_006015	exon20	c.6695_6696insGC	p.R2232fs	.	.	22	13	18	0	.	584
ARID1B	57492	bcgsc.ca	37	6	157522463	157522463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARID1B	NM_020732	exon18	c.A4735G	p.K1579E	.	.	74	4	51	0	.	154
ARL14	80117	bcgsc.ca	37	3	160395543	160395543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARL14	NM_025047	exon1	c.A409G	p.T137A	.	.	142	5	95	0	.	90
ASCC3	10973	bcgsc.ca	37	6	101296057	101296057	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ASCC3	NM_006828	exon4	c.T768C	p.A256A	.	.	155	6	165	0	.	96
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97498423	97498423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ASNS	NM_133436	exon3	c.G46C	p.V16L	.	.	186	55	221	0	.	91
ASTN2	23245	bcgsc.ca	37	9	119802198	119802198	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ASTN2	NM_014010	exon5	c.T1170C	p.A390A	.	.	54	4	74	0	.	161
ATF7IP	55729	broad.mit.edu	37	12	14619488	14619488	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ATF7IP	NM_018179	exon10	c.T2826C	p.A942A	.	.	515	6	532	0	.	252
ATG16L2	89849	bcgsc.ca	37	11	72537802	72537802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ATG16L2	NM_033388	exon13	c.A1300G	p.R434G	.	.	74	7	48	1	.	90
ATP8B1	5205	bcgsc.ca	37	18	55319917	55319917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ATP8B1	NM_005603	exon25	c.A3060G	p.I1020M	.	.	74	4	145	1	.	587
ATP8B2	57198	bcgsc.ca	37	1	154305152	154305152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ATP8B2	NM_020452	exon9	c.A667G	p.S223G	.	.	114	5	101	0	.	92
B3GALNT2	148789	bcgsc.ca	37	1	235658037	235658037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	B3GALNT2	NM_152490	exon2	c.A214G	p.S72G	.	.	162	6	164	2	.	153
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71603895	71603895	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	B3GAT2	NM_080742	exon2	c.C672T	p.N224N	.	.	67	18	61	0	.	93
BBOX1	8424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27137031	27137031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BBOX1	NM_003986	exon6	c.C566A	p.A189E	.	.	67	24	43	0	.	515
BCL7C	9274	bcgsc.ca	37	16	30905176	30905176	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BCL7C	NM_004765	exon1	c.A90G	p.R30R	.	.	63	5	39	1	.	227
BCYRN1	618	ucsc.edu	37	X	70471491	70471491	+	RNA	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	160	78	123	0	.	.
BDH1	622	bcgsc.ca	37	3	197249596	197249596	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BDH1	NM_004051	exon5	c.A324G	p.R108R	.	.	130	5	144	0	.	91
BIVM-ERCC5	0	bcgsc.ca	37	13	103510645	103510645	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001204425	exon14	c.T1911C	p.P637P	.	.	167	5	242	4	.	.
BRD1	23774	bcgsc.ca	37	22	50181092	50181092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BRD1	NM_014577	exon7	c.A2410G	p.T804A	.	.	94	5	55	0	.	91
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776191	9776191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BRPF1	NM_001003694	exon2	c.G367A	p.E123K	.	.	116	72	88	0	.	92
BRS3	680	bcgsc.ca	37	X	135570507	135570507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BRS3	NM_001727	exon1	c.G234A	p.M78I	.	.	220	6	204	2	.	131
BSN	8927	bcgsc.ca	37	3	49690368	49690368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BSN	NM_003458	exon5	c.T3379C	p.S1127P	.	.	109	5	81	0	.	97
BTBD11	121551	bcgsc.ca	37	12	108029086	108029086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BTBD11	NM_001018072	exon12	c.T2656C	p.C886R	.	.	72	4	72	0	.	93
C16orf88	400506	bcgsc.ca	37	16	19726270	19726270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C16orf88	NM_001012991	exon2	c.T88C	p.S30P	.	.	58	4	110	1	.	68
C17orf70	80233	bcgsc.ca	37	17	79516298	79516298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C17orf70	NM_025161	exon4	c.T1337C	p.M446T	.	.	180	7	89	0	.	92
C4orf21	55345	bcgsc.ca	37	4	113540647	113540647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C4orf21	NM_018392	exon6	c.A551G	p.N184S	.	.	97	4	153	0	.	90
C5orf42	65250	bcgsc.ca	37	5	37181085	37181085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C5orf42	NM_023073	exon27	c.G5444A	p.G1815E	.	.	117	5	76	0	.	94
C6orf47	57827	bcgsc.ca	37	6	31627641	31627641	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C6orf47	NM_021184	exon1	c.A84G	p.E28E	.	.	155	5	69	0	.	91
C9orf96	169436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136269044	136269044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C9orf96	NM_153710	exon16	c.G1604T	p.G535V	.	.	49	14	34	0	.	334
CACNA1H	8912	bcgsc.ca	37	16	1257404	1257404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CACNA1H	NM_021098	exon14	c.A3037G	p.I1013V	.	.	76	4	71	1	.	67
CACNA1S	779	bcgsc.ca	37	1	201041925	201041925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CACNA1S	NM_000069	exon16	c.G2185A	p.V729I	.	.	69	4	69	0	.	94
CACNA2D1	781	bcgsc.ca	37	7	81594947	81594947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CACNA2D1	NM_000722	exon32	c.T2537C	p.F846S	.	.	78	4	137	1	.	96
CACNA2D1	781	bcgsc.ca	37	7	81799890	81799890	+	Silent	SNP	A	A	G	rs112096806		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CACNA2D1	NM_000722	exon4	c.T330C	p.A110A	.	.	62	4	92	1	A|0.500;G|0.500	96
CACNA2D4	93589	bcgsc.ca	37	12	1920885	1920885	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CACNA2D4	NM_172364	exon27	c.G2556A	p.A852A	.	.	75	4	45	0	.	23
CAGE1	285782	broad.mit.edu	37	6	7374014	7374014	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CAGE1	NM_001170693	exon5	c.A1038G	p.K346K	.	.	609	10	401	0	.	22
CAPZA3	93661	bcgsc.ca	37	12	18891693	18891693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CAPZA3	NM_033328	exon1	c.A491G	p.E164G	.	.	156	5	141	0	.	91
CASC4	113201	bcgsc.ca	37	15	44620984	44620984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CASC4	NM_138423	exon3	c.A484G	p.S162G	.	.	62	4	51	0	.	91
CATSPER2	117155	broad.mit.edu	37	15	43939613	43939613	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CATSPER2	NM_172097	exon3	c.T198C	p.R66R	.	.	306	8	284	0	.	91
CBR3	874	bcgsc.ca	37	21	37518655	37518655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CBR3	NM_001236	exon3	c.T679C	p.C227R	.	.	73	6	89	0	.	90
CCDC146	57639	bcgsc.ca	37	7	76924053	76924053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC146	NM_020879	exon19	c.A2738G	p.Y913C	.	.	96	5	114	0	.	70
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	180381668	180381668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC39	NM_181426	exon2	c.T197G	p.L66R	.	.	168	13	137	0	.	72
CCDC80	151887	bcgsc.ca	37	3	112324580	112324580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC80	NM_199511	exon8	c.C2537A	p.P846Q	.	.	232	6	145	0	.	92
CCDC8	83987	bcgsc.ca	37	19	46914919	46914919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.C1149G	p.H383Q	.	.	253	67	211	2	.	93
CCDC8	83987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914942	46914942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.A1126G	p.R376G	.	.	233	73	199	4	.	93
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914889	46914889	+	Silent	SNP	C	C	T	rs142275307	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.G1179A	p.A393A	.	.	325	141	182	0	C|1.000;T|0.000	93
CCDC8	83987	ucsc.edu;bcgsc.ca	37	19	46914936	46914936	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.C1132G	p.Q378E	.	.	215	44	207	3	.	93
CCND2	894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4383263	4383263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCND2	NM_001759	exon1	c.C57A	p.N19K	.	.	75	18	42	0	.	1271
CCNF	899	bcgsc.ca	37	16	2481162	2481162	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCNF	NM_001761	exon2	c.T48C	p.C16C	.	.	140	5	209	0	.	658
CDC25A	993	bcgsc.ca	37	3	48205830	48205830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDC25A	NM_001789	exon13	c.A1289G	p.H430R	.	.	115	5	108	0	.	847
CDC42EP4	23580	bcgsc.ca	37	17	71282430	71282430	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDC42EP4	NM_012121	exon2	c.T210C	p.S70S	.	.	163	7	59	0	.	90
CDH19	28513	bcgsc.ca	37	18	64176434	64176434	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDH19	NM_021153	exon11	c.A1626G	p.E542E	.	.	155	5	158	0	.	516
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58560154	58560154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDH26	NM_177980	exon7	c.C807A	p.N269K	.	.	80	20	41	0	.	93
CDK5R1	8851	bcgsc.ca	37	17	30815515	30815515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDK5R1	NM_003885	exon2	c.A877G	p.S293G	.	.	113	5	88	1	.	651
CEP112	201134	bcgsc.ca	37	17	63923761	63923761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CEP112	NM_001199165	exon19	c.A1919G	p.E640G	.	.	122	5	80	0	.	90
CEP97	79598	bcgsc.ca	37	3	101476847	101476847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CEP97	NM_024548	exon9	c.T1397C	p.M466T	.	.	83	4	86	0	.	70
CHAF1B	8208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37785409	37785409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHAF1B	NM_005441	exon12	c.C1289A	p.P430H	.	.	54	20	35	0	.	92
CHAMP1	283489	bcgsc.ca	37	13	115091193	115091193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001164144	exon3	c.A1876G	p.S626G	.	.	72	4	74	0	.	.
CHD6	84181	bcgsc.ca	37	20	40080609	40080609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHD6	NM_032221	exon22	c.A3380G	p.E1127G	.	.	256	7	176	2	.	238
CHRNA3	1136	bcgsc.ca	37	15	78894542	78894542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHRNA3	NM_000743	exon5	c.A442G	p.T148A	.	.	71	4	61	0	.	515
CHRNB4	1143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78927919	78927919	+	Silent	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHRNB4	NM_000750	exon2	c.C66G	p.R22R	.	.	123	108	49	0	.	90
CHSY3	337876	bcgsc.ca	37	5	129520658	129520658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHSY3	NM_175856	exon3	c.A1823G	p.Q608R	.	.	74	4	84	0	.	25
CIRH1A	84916	bcgsc.ca	37	16	69202809	69202809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CIRH1A	NM_032830	exon17	c.C2030T	p.P677L	.	.	155	6	173	0	.	90
CIT	11113	bcgsc.ca	37	12	120150151	120150151	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CIT	NM_001206999	exon37	c.T4686C	p.D1562D	.	.	97	4	70	0	.	399
CLCN3	1182	broad.mit.edu	37	4	170628279	170628279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CLCN3	NM_001829	exon11	c.A2011G	p.T671A	.	.	90	4	171	0	.	136
CLEC4C	170482	bcgsc.ca	37	12	7890142	7890142	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CLEC4C	NM_130441	exon5	c.T264C	p.T88T	.	.	72	4	80	0	.	93
CLEC9A	283420	bcgsc.ca	37	12	10213846	10213846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CLEC9A	NM_207345	exon6	c.C293T	p.A98V	.	.	96	4	81	0	.	91
CLPB	81570	bcgsc.ca	37	11	72028239	72028239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CLPB	NM_030813	exon8	c.A989G	p.E330G	.	.	64	5	42	1	.	91
CLRN1	7401	bcgsc.ca	37	3	150690362	150690362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CLRN1	NM_001256819	exon1	c.T134C	p.L45P	.	.	174	7	88	0	.	90
CLTCL1	8218	bcgsc.ca	37	22	19241740	19241740	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CLTCL1	NM_001835	exon3	c.A261G	p.T87T	.	.	119	5	96	0	.	230
CNTN6	27255	bcgsc.ca	37	3	1367497	1367497	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CNTN6	NM_014461	exon9	c.947-2A>G	.	.	.	45	4	39	0	.	345
CNTN6	27255	bcgsc.ca	37	3	1444167	1444167	+	Missense_Mutation	SNP	T	T	C	rs139391275	byfrequency;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CNTN6	NM_014461	exon22	c.T2983C	p.S995P	.	.	197	6	191	0	T|0.999;A|0.001	345
COASY	80347	bcgsc.ca	37	17	40714854	40714854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COASY	NM_001042532	exon3	c.T301C	p.Y101H	.	.	63	4	50	0	.	115
COG7	91949	bcgsc.ca	37	16	23421661	23421661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COG7	NM_153603	exon11	c.A1430G	p.E477G	.	.	92	6	141	1	.	90
COL16A1	1307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32121031	32121031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COL16A1	NM_001856	exon67	c.G4174A	p.G1392S	.	.	204	84	177	1	.	98
COL1A2	1278	bcgsc.ca	37	7	94057081	94057081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COL1A2	NM_000089	exon49	c.C3410T	p.A1137V	.	.	75	4	82	0	.	521
COL7A1	1294	bcgsc.ca	37	3	48628138	48628138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COL7A1	NM_000094	exon13	c.A1748G	p.E583G	.	.	74	4	41	0	.	160
COLQ	8292	bcgsc.ca	37	3	15563125	15563125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COLQ	NM_080539	exon1	c.T8C	p.V3A	.	.	80	4	72	0	.	90
COQ3	51805	bcgsc.ca	37	6	99819386	99819386	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COQ3	NM_017421	exon6	c.A807G	p.Q269Q	.	.	159	5	123	1	.	91
COX15	1355	bcgsc.ca	37	10	101489443	101489443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	COX15	NM_004376	exon2	c.T139C	p.S47P	.	.	61	4	38	0	.	227
CR1	1378	bcgsc.ca	37	1	207785140	207785140	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CR1	NM_000651	exon38	c.T6414C	p.A2138A	.	.	236	7	230	2	.	93
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113662399	113662399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CSMD3	NM_198123	exon19	c.A3184G	p.T1062A	.	.	363	84	143	1	.	1132
CSNK2A1	1457	bcgsc.ca	37	20	479947	479947	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CSNK2A1	NM_001895	exon5	c.A318G	p.S106S	.	.	55	4	57	0	.	791
CTPS1	1503	bcgsc.ca	37	1	41468809	41468809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001905	exon12	c.G1213A	p.A405T	.	.	145	6	136	0	.	.
CYB5R1	51706	bcgsc.ca	37	1	202935040	202935040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYB5R1	NM_016243	exon4	c.A320G	p.Q107R	.	.	147	6	151	1	.	91
CYLC1	1538	broad.mit.edu;bcgsc.ca	37	X	83129115	83129115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYLC1	NM_021118	exon4	c.G1399T	p.D467Y	.	.	571	19	600	0	.	112
CYLC1	1538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128877	83128877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYLC1	NM_021118	exon4	c.G1161T	p.L387F	.	.	194	102	181	0	.	112
CYP1A1	1543	bcgsc.ca	37	15	75015393	75015393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYP1A1	NM_000499	exon2	c.T46C	p.S16P	.	.	78	4	74	1	.	156
CYP3A5	1577	bcgsc.ca	37	7	99264598	99264598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CYP3A5	NM_000777	exon5	c.T409C	p.F137L	.	.	192	6	197	1	.	90
DBI	1622	broad.mit.edu	37	2	120128330	120128330	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DBI	NM_001178017	exon3	c.T325C	p.L109L	.	.	235	5	141	1	.	90
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53540463	53540463	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	DDHD1,NS,carcinoma,-2	DDHD1	NM_001160147	exon6	c.T1413C	p.D471D	.	.	191	77	214	0	.	92
DDIT4L	115265	bcgsc.ca	37	4	101109043	101109043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DDIT4L	NM_145244	exon3	c.G373A	p.V125M	.	.	78	4	95	0	.	91
DDX60	55601	bcgsc.ca	37	4	169146733	169146733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DDX60	NM_017631	exon34	c.T4628C	p.V1543A	.	.	97	4	168	0	.	25
DDX60L	91351	bcgsc.ca	37	4	169351737	169351737	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DDX60L	NM_001012967	exon13	c.T1569C	p.Y523Y	.	.	76	4	131	0	.	69
DENND4A	10260	bcgsc.ca	37	15	66007844	66007844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DENND4A	NM_001144823	exon14	c.T1925C	p.L642P	.	.	55	4	54	0	.	229
DENND5B	160518	bcgsc.ca	37	12	31595769	31595769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DENND5B	NM_144973	exon7	c.A1952G	p.E651G	.	.	240	7	241	1	.	24
DIAPH1	1729	bcgsc.ca	37	5	140951577	140951577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DIAPH1	NM_005219	exon17	c.T2389C	p.F797L	.	.	63	4	64	0	.	91
DICER1	23405	bcgsc.ca	37	14	95595878	95595878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DICER1	NM_030621	exon7	c.A665G	p.K222R	.	.	196	6	212	0	.	961
DLEC1	9940	bcgsc.ca	37	3	38158262	38158262	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DLEC1	NM_007337	exon29	c.4063-2A>G	.	.	.	91	5	54	1	.	161
DMTF1	9988	bcgsc.ca	37	7	86802875	86802875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DMTF1	NM_001142327	exon6	c.G352A	p.E118K	.	.	89	4	95	0	.	91
DMXL2	23312	bcgsc.ca	37	15	51791560	51791560	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DMXL2	NM_001174116	exon18	c.T3861C	p.S1287S	.	.	141	5	151	0	.	99
DNAAF1	123872	bcgsc.ca	37	16	84208305	84208305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAAF1	NM_178452	exon10	c.A1675G	p.T559A	.	.	86	5	156	2	.	73
DNAH10	196385	bcgsc.ca	37	12	124272403	124272403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAH10	NM_207437	exon10	c.A1291G	p.R431G	.	.	73	4	66	0	.	95
DNAH12	201625	bcgsc.ca	37	3	57440575	57440575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAH12	NM_178504	exon23	c.G3314A	p.G1105D	.	.	182	6	178	0	.	47
DNAH1	25981	bcgsc.ca	37	3	52404497	52404497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAH1	NM_015512	exon40	c.T6263C	p.L2088P	.	.	71	4	82	0	.	67
DNAH1	25981	bcgsc.ca	37	3	52425584	52425584	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAH1	NM_015512	exon63	c.C10017T	p.T3339T	.	.	122	5	93	1	.	67
DNAH2	146754	bcgsc.ca	37	17	7726758	7726758	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAH2	NM_020877	exon73	c.11143-2A>G	.	.	.	62	4	66	1	.	102
DNAH9	1770	bcgsc.ca	37	17	11725852	11725852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAH9	NM_001372	exon47	c.A8948G	p.E2983G	.	.	73	4	88	0	.	168
DNAJA2	10294	bcgsc.ca	37	16	46993231	46993231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAJA2	NM_005880	exon7	c.G875A	p.R292H	.	.	137	5	150	0	.	226
DNAJA3	9093	bcgsc.ca	37	16	4498781	4498781	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAJA3	NM_001135110	exon9	c.A1173G	p.K391K	.	.	54	5	69	0	.	291
DNAJC4	3338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63999389	63999389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DNAJC4	NM_005528	exon3	c.G133T	p.A45S	.	.	132	39	121	1	.	226
DOCK5	80005	bcgsc.ca	37	8	25158101	25158101	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DOCK5	NM_024940	exon9	c.T774C	p.Y258Y	.	.	91	4	95	0	.	71
DOK6	220164	bcgsc.ca	37	18	67266706	67266706	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DOK6	NM_152721	exon3	c.A261G	p.E87E	.	.	82	4	86	0	.	92
DPCR1	135656	broad.mit.edu	37	6	30919083	30919083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DPCR1	NM_080870	exon2	c.A2842G	p.R948G	.	.	586	8	387	5	.	90
DPY19L1P1	100129460	ucsc.edu	37	7	32674869	32674869	+	RNA	SNP	T	T	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	310	123	388	2	.	.
DRG1	4733	bcgsc.ca	37	22	31822736	31822736	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DRG1	NM_004147	exon7	c.A849G	p.E283E	.	.	169	5	129	0	.	90
DUSP19	142679	bcgsc.ca	37	2	183960250	183960250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DUSP19	NM_080876	exon4	c.T518C	p.F173S	.	.	302	7	201	0	.	231
EEF2K	29904	bcgsc.ca	37	16	22276179	22276179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EEF2K	NM_013302	exon13	c.A1418G	p.D473G	.	.	77	4	75	0	.	856
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3736844	3736844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EFCAB4B	NM_001144958	exon16	c.T1764G	p.N588K	.	.	59	15	46	0	.	92
EIF4E	1977	bcgsc.ca	37	4	99823119	99823119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EIF4E	NM_001130678	exon2	c.T93C	p.T31T	.	.	89	4	181	0	.	1270
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12896302	12896302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAC2	NM_018127	exon24	c.G2314C	p.A772P	.	.	25	19	16	0	.	90
ELAVL3	1995	bcgsc.ca;mdanderson.org	37	19	11569052	11569052	+	Silent	SNP	G	G	A	rs114284954	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAVL3	NM_032281	exon5	c.C537T	p.A179A	.	.	84	30	56	1	G|0.996;A|0.004	92
ELMO2	63916	bcgsc.ca	37	20	45022703	45022703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELMO2	NM_182764	exon3	c.A104G	p.K35R	.	.	81	4	55	0	.	91
ELMO3	79767	ucsc.edu;bcgsc.ca	37	16	67234641	67234641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELMO3	NM_024712	exon7	c.A754G	p.S252G	.	.	40	4	35	1	.	90
EMC8	10328	bcgsc.ca	37	16	85822651	85822651	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_006067	exon2	c.T237C	p.D79D	.	.	72	4	93	0	.	.
ENTPD5	957	bcgsc.ca	37	14	74438565	74438565	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ENTPD5	NM_001249	exon14	c.A1074G	p.K358K	.	.	71	4	50	0	.	91
EPC1	80314	ucsc.edu;bcgsc.ca	37	10	32576204	32576204	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EPC1	NM_001272004	exon8	c.976-2A>G	.	.	.	35	4	37	0	.	93
EPC2	26122	bcgsc.ca	37	2	149526739	149526739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EPC2	NM_015630	exon8	c.A1160G	p.E387G	.	.	167	6	126	0	.	137
EPHB2	2048	bcgsc.ca	37	1	23233254	23233254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EPHB2	NM_004442	exon11	c.A1943G	p.E648G	.	.	65	4	96	1	.	1381
ERCC6L2	375748	bcgsc.ca	37	9	98678072	98678072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001010895	exon5	c.T944C	p.L315P	.	.	90	4	99	0	.	.
ERMP1	79956	bcgsc.ca	37	9	5787182	5787182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ERMP1	NM_024896	exon15	c.T2677C	p.S893P	.	.	87	4	135	0	.	69
ERN1	2081	bcgsc.ca	37	17	62175581	62175581	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ERN1	NM_001433	exon2	c.A75G	p.T25T	.	.	166	5	106	0	.	784
EXOC6B	23233	ucsc.edu;bcgsc.ca	37	2	72606935	72606935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EXOC6B	NM_015189	exon19	c.T2045C	p.L682P	.	.	39	4	30	1	.	68
FAM13C	220965	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61029860	61029860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM13C	NM_198215	exon7	c.C602A	p.P201Q	.	.	253	127	180	1	.	70
FAM175B	23172	bcgsc.ca	37	10	126520032	126520032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM175B	NM_032182	exon8	c.A778G	p.R260G	.	.	80	4	51	0	.	186
FAM179B	23116	bcgsc.ca	37	14	45537722	45537722	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM179B	NM_015091	exon17	c.A4686G	p.R1562R	.	.	146	5	162	0	.	93
FAM182B	728882	bcgsc.ca;mdanderson.org	37	20	25755526	25755526	+	RNA	SNP	C	C	T	rs112684378		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	52	23	30	2	C|0.500;T|0.500	.
FAM193A	8603	bcgsc.ca	37	4	2692498	2692498	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM193A	NM_001256667	exon14	c.A1797G	p.T599T	.	.	157	5	212	0	.	93
FAM205A	259308	bcgsc.ca	37	9	34726863	34726863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001141917	exon4	c.T374C	p.I125T	.	.	91	4	74	0	.	.
FAM45B	55855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129629661	129629666	+	RNA	DEL	CTGATG	CTGATG	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CTGATG	CTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM45B	.	.	.	.	.	.	317	53	331	0	.	63
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89836314	89836314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCA	NM_000135	exon26	c.T2435C	p.L812P	.	.	44	5	54	1	.	1130
FANCD2	2177	bcgsc.ca	37	3	10076453	10076453	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCD2	NM_001018115	exon5	c.T348C	p.S116S	.	.	133	5	132	0	.	229
FANCG	2189	ucsc.edu;bcgsc.ca	37	9	35079184	35079184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FANCG	NM_004629	exon2	c.C139A	p.L47M	.	.	45	4	38	1	.	724
FBLN1	2192	bcgsc.ca	37	22	45970437	45970437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FBLN1	NM_006486	exon15	c.C1744T	p.R582C	.	.	80	4	62	0	.	515
FBXO17	115290	bcgsc.ca	37	19	39435623	39435623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FBXO17	NM_148169	exon5	c.A706G	p.R236G	.	.	94	6	41	2	.	226
FBXW2	26190	bcgsc.ca	37	9	123527051	123527051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FBXW2	NM_012164	exon8	c.A1151G	p.N384S	.	.	75	4	55	0	.	227
FCHSD2	9873	bcgsc.ca	37	11	72632888	72632888	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FCHSD2	NM_014824	exon9	c.A813G	p.L271L	.	.	86	4	92	0	.	228
FER1L6	654463	bcgsc.ca	37	8	125103787	125103787	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FER1L6	NM_001039112	exon34	c.C4515A	p.V1505V	.	.	152	5	114	0	.	100
FHAD1	114827	bcgsc.ca	37	1	15627873	15627873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FHAD1	NM_052929	exon6	c.A851G	p.K284R	.	.	75	4	101	0	.	69
FKBP10	60681	hgsc.bcm.edu	37	17	39969300	39969301	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FKBP10	NM_021939	exon1	c.14_15insC	p.G5fs	.	.	103	9	28	0	.	227
FLNB	2317	bcgsc.ca	37	3	58097931	58097931	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FLNB	NM_001457	exon18	c.A2631G	p.K877K	.	.	92	5	85	0	.	593
FLT1	2321	ucsc.edu;bcgsc.ca	37	13	28942733	28942733	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FLT1	NM_001160030	exon15	c.A2184G	p.S728S	.	.	62	6	58	0	.	1406
FRAS1	80144	ucsc.edu;bcgsc.ca	37	4	79284727	79284727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRAS1	NM_001166133	exon21	c.T2483C	p.L828P	.	.	45	4	82	0	.	68
FRMD7	90167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131212315	131212315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRMD7	NM_194277	exon12	c.C1730T	p.A577V	.	.	245	113	202	0	.	228
G2E3	55632	bcgsc.ca	37	14	31058624	31058624	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	G2E3	NM_017769	exon4	c.A171G	p.E57E	.	.	151	6	142	0	.	660
GABRA1	2554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161318012	161318012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GABRA1	NM_001127643	exon9	c.C812T	p.S271F	.	.	148	62	156	1	.	93
GALM	130589	bcgsc.ca	37	2	38903187	38903187	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GALM	NM_138801	exon2	c.A324G	p.G108G	.	.	147	7	110	0	.	90
GALNT5	11227	bcgsc.ca	37	2	158115249	158115249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GALNT5	NM_014568	exon1	c.A655G	p.T219A	.	.	74	4	46	0	.	290
GALNT8	26290	broad.mit.edu;mdanderson.org	37	12	4848462	4848462	+	Nonsense_Mutation	SNP	G	G	T	rs111635477	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GALNT8	NM_017417	exon3	c.G643T	p.E215X	.	.	66	32	58	1	G|0.500;A|0.500	230
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	34072948	34072948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GAS2L2	NM_139285	exon6	c.C1568T	p.T523I	.	.	27	9	14	0	.	227
GAS2L3	283431	bcgsc.ca	37	12	100995491	100995491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GAS2L3	NM_174942	exon5	c.T263C	p.L88P	.	.	244	6	236	0	.	227
GML	2765	bcgsc.ca	37	8	143928077	143928077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GML	NM_002066	exon4	c.T448C	p.S150P	.	.	144	5	107	1	.	650
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155643090	155643090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GMPS	NM_003875	exon12	c.A1495T	p.M499L	.	.	1011	681	643	1	.	229
GNB5	10681	bcgsc.ca	37	15	52476766	52476766	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GNB5	NM_016194	exon2	c.T108C	p.C36C	.	.	100	5	87	0	.	227
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37366808	37366808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GOLGA4	NM_001172713	exon15	c.A3497G	p.N1166S	.	.	225	123	207	0	.	93
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	19017392	19017392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GPR64	NM_001184834	exon26	c.G2336T	p.W779L	.	.	209	20	152	0	.	130
GPT	2875	bcgsc.ca	37	8	145732304	145732304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GPT	NM_005309	exon11	c.T1412C	p.L471P	.	.	178	5	64	0	.	91
GRM5	2915	broad.mit.edu	37	11	88780400	88780400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GRM5	NM_000842	exon2	c.T641C	p.V214A	.	.	209	6	218	0	.	949
GSPT1	2935	bcgsc.ca	37	16	11980462	11980462	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GSPT1	NM_002094	exon9	c.A1119G	p.E373E	.	.	168	6	208	0	.	206
GUCY1B3	2983	bcgsc.ca	37	4	156696205	156696205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_000857	exon3	c.G163A	p.A55T	.	.	48	4	55	0	.	.
HAVCR1	26762	bcgsc.ca	37	5	156469682	156469682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HAVCR1	NM_001099414	exon6	c.A793G	p.T265A	.	.	237	6	255	0	.	92
HDAC2	3066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114264582	114264582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HDAC2	NM_001527	exon12	c.T1311A	p.D437E	.	.	194	71	198	0	.	660
HECTD1	25831	bcgsc.ca	37	14	31578687	31578687	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HECTD1	NM_015382	exon36	c.A6396G	p.R2132R	.	.	163	5	170	0	.	570
HECTD3	79654	bcgsc.ca	37	1	45475301	45475301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HECTD3	NM_024602	exon5	c.A814G	p.S272G	.	.	78	5	79	0	.	658
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484350	43484350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HECW1	NM_015052	exon11	c.T1579A	p.S527T	.	.	73	20	58	0	.	669
HEPHL1	341208	bcgsc.ca	37	11	93834490	93834490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HEPHL1	NM_001098672	exon14	c.T2564C	p.M855T	.	.	81	4	81	0	.	71
HIVEP1	3096	bcgsc.ca	37	6	12125648	12125648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HIVEP1	NM_002114	exon4	c.T5620C	p.S1874P	.	.	122	5	92	0	.	139
HIVEP3	59269	bcgsc.ca	37	1	42048443	42048443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HIVEP3	NM_024503	exon4	c.T2026C	p.S676P	.	.	252	7	218	1	.	157
HMX3	340784	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124896950	124896950	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HMX3	NM_001105574	exon2	c.C777T	p.G259G	.	.	85	33	49	1	.	68
HPS5	11234	broad.mit.edu;bcgsc.ca	37	11	18318512	18318512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HPS5	NM_181507	exon12	c.A1343G	p.D448G	.	.	105	6	107	1	.	133
HRC	3270	broad.mit.edu	37	19	49657913	49657913	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HRC	NM_002152	exon1	c.G582A	p.E194E	.	.	342	9	150	3	.	91
HTR2B	3357	bcgsc.ca	37	2	231973961	231973961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HTR2B	NM_000867	exon4	c.T716C	p.L239P	.	.	199	7	164	2	.	90
HTR3C	170572	bcgsc.ca	37	3	183772522	183772522	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HTR3C	NM_130770	exon2	c.T81C	p.A27A	.	.	74	4	87	0	.	154
HTR7	3363	bcgsc.ca	37	10	92617227	92617227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HTR7	NM_019860	exon1	c.T202C	p.S68P	.	.	79	4	65	0	.	91
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53588743	53588743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HUWE1	NM_031407	exon55	c.A7481G	p.E2494G	.	.	171	7	133	0	.	280
HYI	81888	bcgsc.ca	37	1	43917179	43917179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HYI	NM_001243526	exon8	c.A737G	p.E246G	.	.	53	5	59	0	.	91
IARS	3376	bcgsc.ca	37	9	95051583	95051583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IARS	NM_013417	exon2	c.A119G	p.K40R	.	.	235	6	246	1	.	92
IGF2R	3482	broad.mit.edu;bcgsc.ca	37	6	160479150	160479154	+	Frame_Shift_Del	DEL	TTTTA	TTTTA	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	TTTTA	TTTTA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IGF2R	NM_000876	exon21	c.2892_2896del	p.964_966del	.	.	301	8	242	0	.	118
IL12RB2	3595	bcgsc.ca	37	1	67795377	67795377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL12RB2	NM_001559	exon6	c.A772G	p.R258G	.	.	120	6	106	0	.	92
IL17REL	400935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50439551	50439551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL17REL	NM_001001694	exon4	c.C69G	p.C23W	.	.	78	46	43	0	.	23
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	27448870	27448870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL21R	NM_181079	exon5	c.C280A	p.H94N	.	.	38	27	37	0	.	660
IL2RG	3561	bcgsc.ca	37	X	70330019	70330019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL2RG	NM_000206	exon4	c.A581G	p.D194G	.	.	152	6	121	2	.	227
IL36A	27179	bcgsc.ca	37	2	113764225	113764225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL36A	NM_014440	exon3	c.A175G	p.R59G	.	.	246	6	174	2	.	93
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260049	55260057	+	In_Frame_Del	DEL	CAATGTTGA	CAATGTTGA	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAATGTTGA	CAATGTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL6ST	NM_175767	exon6	c.575_583del	p.192_195del	.	.	273	73	296	0	.	290
INPP5B	3633	broad.mit.edu;bcgsc.ca	37	1	38339824	38339824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	INPP5B	NM_005540	exon18	c.T1792C	p.C598R	.	.	88	7	68	1	.	227
IQGAP3	128239	bcgsc.ca	37	1	156497819	156497819	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IQGAP3	NM_178229	exon37	c.A4707G	p.G1569G	.	.	124	5	111	0	.	96
IQGAP3	128239	bcgsc.ca	37	1	156518410	156518410	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IQGAP3	NM_178229	exon17	c.A1956G	p.R652R	.	.	84	5	81	0	.	96
ITGA11	22801	bcgsc.ca	37	15	68695309	68695309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ITGA11	NM_001004439	exon2	c.A112G	p.T38A	.	.	92	5	80	0	.	538
ITGA2	3673	broad.mit.edu;bcgsc.ca	37	5	52379216	52379216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ITGA2	NM_002203	exon27	c.A3191G	p.D1064G	.	.	197	11	123	1	.	226
ITIH1	3697	bcgsc.ca	37	3	52825817	52825817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ITIH1	NM_002215	exon22	c.A2626G	p.S876G	.	.	74	4	67	1	.	93
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883162	152883162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IVL	NM_005547	exon2	c.G889A	p.D297N	.	.	220	85	159	2	.	93
JAK2	3717	bcgsc.ca	37	9	5126368	5126368	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	JAK2	NM_004972	exon24	c.A3213G	p.G1071G	.	.	62	4	109	0	.	75307
JPH2	57158	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	42815335	42815335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	JPH2	NM_175913	exon1	c.G11T	p.G4V	.	.	15	11	9	0	.	91
KANK2	25959	bcgsc.ca	37	19	11304121	11304121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KANK2	NM_015493	exon2	c.T635C	p.L212P	.	.	60	5	40	0	.	68
KCNJ8	3764	bcgsc.ca	37	12	21919280	21919280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KCNJ8	NM_004982	exon3	c.A652G	p.S218G	.	.	105	5	96	1	.	90
KCNU1	157855	bcgsc.ca	37	8	36780127	36780127	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KCNU1	NM_001031836	exon24	c.T2716C	p.L906L	.	.	73	4	113	2	.	23
KDM1A	23028	bcgsc.ca	37	1	23397818	23397818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KDM1A	NM_001009999	exon13	c.A1514G	p.K505R	.	.	86	4	158	0	.	206
KHDRBS3	10656	bcgsc.ca	37	8	136619266	136619266	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KHDRBS3	NM_006558	exon7	c.C876T	p.S292S	.	.	216	6	126	0	.	92
KIAA1147	57189	bcgsc.ca	37	7	141365103	141365103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KIAA1147	NM_001080392	exon6	c.G836T	p.C279F	.	.	51	4	51	0	.	69
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37447823	37447823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001144990	exon7	c.A4213C	p.I1405L	.	.	48	21	48	0	.	.
KIAA1549	57670	bcgsc.ca	37	7	138602431	138602431	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KIAA1549	NM_020910	exon2	c.T1941C	p.S647S	.	.	60	4	48	0	.	369
KIAA1549	57670	bcgsc.ca	37	7	138602892	138602892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KIAA1549	NM_020910	exon2	c.T1480C	p.S494P	.	.	58	4	65	0	.	369
KIAA1551	55196	bcgsc.ca	37	12	32136220	32136220	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_018169	exon4	c.A2331G	p.K777K	.	.	95	4	98	0	.	.
KIF13B	23303	bcgsc.ca	37	8	29043960	29043960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KIF13B	NM_015254	exon6	c.A346G	p.T116A	.	.	67	4	98	0	.	22
KPNA7	402569	bcgsc.ca	37	7	98775658	98775658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KPNA7	NM_001145715	exon9	c.T1349C	p.L450P	.	.	142	5	134	2	.	158
KRBA2	124751	bcgsc.ca	37	17	8273630	8273630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KRBA2	NM_213597	exon2	c.A301G	p.M101V	.	.	181	6	302	1	.	68
KRT74	121391	bcgsc.ca	37	12	52962085	52962085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KRT74	NM_175053	exon7	c.A1223G	p.E408G	.	.	151	5	114	0	.	92
KY	339855	bcgsc.ca;mdanderson.org	37	3	134348537	134348537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KY	NM_178554	exon4	c.G263T	p.G88V	.	.	202	64	108	2	.	24
LAMA2	3908	bcgsc.ca	37	6	129636954	129636954	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	LAMA2,NS,carcinoma,+1	LAMA2	NM_000426	exon26	c.T3783C	p.A1261A	.	.	74	4	57	0	.	162
LAMB3	3914	broad.mit.edu;bcgsc.ca	37	1	209790903	209790903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LAMB3	NM_000228	exon21	c.A3080G	p.K1027R	.	.	84	6	83	0	.	156
LAMC3	10319	broad.mit.edu	37	9	133942416	133942416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LAMC3	NM_006059	exon14	c.C2417T	p.P806L	.	.	55	5	55	0	.	93
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152759968	152759968	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCE1E	NM_178353	exon2	c.193delG	p.G65fs	.	.	147	39	112	0	.	90
LCK	3932	bcgsc.ca	37	1	32740997	32740997	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCK	NM_005356	exon5	c.A354G	p.K118K	.	.	174	7	169	2	.	1378
LCN15	389812	bcgsc.ca	37	9	139658415	139658415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCN15	NM_203347	exon2	c.T143C	p.V48A	.	.	81	4	53	0	.	68
LCN2	3934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130912582	130912582	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCN2	NM_005564	exon2	c.G204A	p.P68P	.	.	232	111	178	0	.	90
LEF1	51176	bcgsc.ca	37	4	108985511	108985511	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LEF1	NM_016269	exon10	c.A1146G	p.K382K	.	.	168	5	237	0	.	721
LEKR1	389170	broad.mit.edu	37	3	156742627	156742627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LEKR1	NM_001004316	exon11	c.A1282G	p.T428A	.	.	606	9	455	0	.	68
LGR4	55366	bcgsc.ca	37	11	27398741	27398741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LGR4	NM_018490	exon12	c.T1073C	p.L358P	.	.	227	6	218	0	.	91
LIN52	91750	bcgsc.ca	37	14	74564548	74564548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LIN52	NM_001024674	exon4	c.A196G	p.I66V	.	.	82	4	71	0	.	135
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	57026472	57026472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LMAN1	NM_005570	exon1	c.C5T	p.A2V	.	.	39	27	52	0	.	91
LNX1	84708	broad.mit.edu	37	4	54327172	54327172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LNX1	NM_001126328	exon11	c.A2089G	p.T697A	.	.	263	5	255	3	.	229
LOC286135	0	bcgsc.ca	37	8	29779525	29779525	+	RNA	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	11	3	28	0	.	.
LPHN1	22859	bcgsc.ca	37	19	14263396	14263396	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LPHN1	NM_001008701	exon21	c.T3468C	p.T1156T	.	.	65	6	39	0	.	523
LPHN1	22859	bcgsc.ca	37	19	14268121	14268121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LPHN1	NM_001008701	exon15	c.T2702C	p.I901T	.	.	68	4	44	1	.	523
LPHN1	22859	bcgsc.ca	37	19	14268205	14268205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LPHN1	NM_001008701	exon15	c.T2618C	p.V873A	.	.	104	5	68	0	.	523
LRP4	4038	bcgsc.ca	37	11	46918513	46918513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LRP4	NM_002334	exon8	c.T829C	p.C277R	.	.	101	5	85	0	.	94
LRRC2	79442	bcgsc.ca	37	3	46563137	46563137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LRRC2	NM_024512	exon8	c.T941C	p.L314P	.	.	96	7	72	0	.	91
LRRC37A4P	55073	broad.mit.edu	37	17	43587526	43587526	+	RNA	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	194	5	168	1	.	.
LRRC6	23639	bcgsc.ca	37	8	133627325	133627325	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LRRC6	NM_012472	exon8	c.A933G	p.K311K	.	.	184	6	112	0	.	92
LUC7L	55692	bcgsc.ca	37	16	258114	258114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LUC7L	NM_201412	exon4	c.A329G	p.E110G	.	.	80	4	134	1	.	90
MAML2	84441	broad.mit.edu	37	11	95825371	95825371	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MAML2	NM_032427	exon2	c.G1824A	p.Q608Q	.	.	262	6	138	5	.	850
MAML2	84441	broad.mit.edu;bcgsc.ca	37	11	95825374	95825374	+	Silent	SNP	T	T	C	rs112603485		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MAML2	NM_032427	exon2	c.A1821G	p.Q607Q	.	.	247	47	131	12	C|1.000;|0.000	850
MAN1A2	10905	bcgsc.ca	37	1	118065552	118065552	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MAN1A2	NM_006699	exon13	c.A1899G	p.T633T	.	.	91	4	79	0	.	90
MAP3K13	9175	bcgsc.ca	37	3	185198135	185198135	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MAP3K13	NM_004721	exon13	c.T2617C	p.L873L	.	.	82	4	107	0	.	548
MAP3K4	4216	bcgsc.ca	37	6	161507674	161507674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MAP3K4	NM_006724	exon9	c.T2531C	p.V844A	.	.	144	5	116	0	.	548
MAPK4	5596	broad.mit.edu	37	18	48190345	48190345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MAPK4	NM_002747	exon2	c.A17G	p.D6G	.	.	126	7	144	2	.	1404
MB21D2	151963	bcgsc.ca	37	3	192517202	192517202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MB21D2	NM_178496	exon2	c.T449C	p.L150P	.	.	109	6	108	3	.	70
MCCC1	56922	bcgsc.ca	37	3	182735052	182735052	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MCCC1	NM_020166	exon19	c.2049+2T>C	.	.	.	61	4	43	0	.	92
MCM3AP	8888	ucsc.edu;bcgsc.ca	37	21	47693478	47693478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MCM3AP	NM_003906	exon7	c.A2020G	p.K674E	.	.	30	4	25	0	.	291
MDGA2	161357	bcgsc.ca	37	14	48143817	48143817	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MDGA2	NM_001113498	exon1	c.T183C	p.A61A	.	.	78	5	74	0	.	95
MDM2	4193	bcgsc.ca	37	12	69222663	69222663	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MDM2	NM_002392	exon8	c.T636C	p.C212C	.	.	183	8	187	0	.	1270
MECR	51102	bcgsc.ca	37	1	29533419	29533419	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MECR	NM_016011	exon5	c.407-2A>G	.	.	.	70	4	63	0	.	91
MED15	51586	ucsc.edu	37	22	20937445	20937445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MED15	NM_001003891	exon12	c.A1583G	p.E528G	.	.	35	5	21	1	.	211
METAP1	23173	ucsc.edu;bcgsc.ca	37	4	99955478	99955478	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_015143	exon3	c.A264G	p.R88R	.	.	42	4	52	0	.	.
MEX3C	51320	bcgsc.ca	37	18	48703892	48703892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MEX3C	NM_016626	exon2	c.T809C	p.V270A	.	.	85	4	106	0	.	659
MEX3C	51320	bcgsc.ca	37	18	48723002	48723002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MEX3C	NM_016626	exon1	c.T689C	p.V230A	.	.	42	4	50	0	.	659
MFSD5	84975	bcgsc.ca	37	12	53646883	53646883	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MFSD5	NM_001170790	exon2	c.A585G	p.T195T	.	.	157	5	125	0	.	93
MGA	23269	bcgsc.ca	37	15	42042025	42042025	+	Missense_Mutation	SNP	C	C	A	rs199971244	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MGA	NM_001164273	exon17	c.C6220A	p.R2074S	.	.	82	4	67	2	.	522
MGST2	4258	bcgsc.ca	37	4	140599716	140599716	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MGST2	NM_001204366	exon2	c.T78C	p.V26V	.	.	191	6	251	0	.	91
MKI67	4288	bcgsc.ca	37	10	129913996	129913996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MKI67	NM_002417	exon7	c.T676C	p.C226R	.	.	77	4	60	0	.	519
MKI67	4288	broad.mit.edu	37	10	129903857	129903857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MKI67	NM_002417	exon13	c.T6247C	p.F2083L	.	.	747	8	518	0	.	519
MORC2	22880	bcgsc.ca	37	22	31335951	31335951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MORC2	NM_014941	exon12	c.T796C	p.S266P	.	.	69	4	51	0	.	92
MOXD1	26002	bcgsc.ca	37	6	132618418	132618418	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MOXD1	NM_015529	exon12	c.A1716G	p.R572R	.	.	202	6	145	0	.	515
MPHOSPH10	10199	broad.mit.edu	37	2	71360444	71360444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MPHOSPH10	NM_005791	exon2	c.A506G	p.E169G	.	.	224	6	188	1	.	93
MPP7	143098	bcgsc.ca	37	10	28438950	28438950	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MPP7	NM_173496	exon6	c.G195T	p.P65P	.	.	57	4	63	0	.	45
MRPL48	51642	bcgsc.ca	37	11	73574289	73574289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_016055	exon7	c.A547G	p.R183G	.	.	163	5	158	0	.	.
MTA2	9219	bcgsc.ca	37	11	62368149	62368149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTA2	NM_004739	exon2	c.T41C	p.F14S	.	.	88	4	81	0	.	92
MTG1	92170	bcgsc.ca	37	10	135213074	135213074	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTG1	NM_138384	exon6	c.G462A	p.V154V	.	.	88	4	73	0	.	91
MTM1	4534	bcgsc.ca	37	X	149809800	149809800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTM1	NM_000252	exon8	c.A587G	p.D196G	.	.	221	6	211	0	.	228
MTMR14	64419	bcgsc.ca	37	3	9719722	9719722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTMR14	NM_022485	exon9	c.A877G	p.I293V	.	.	88	4	79	1	.	91
MTRF1	9617	bcgsc.ca	37	13	41835024	41835024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTRF1	NM_004294	exon2	c.T20C	p.V7A	.	.	121	5	153	0	.	90
MTRF1L	54516	hgsc.bcm.edu	37	6	153316373	153316374	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTRF1L	NM_019041	exon3	c.421_422insAA	p.E141fs	.	.	339	32	360	0	.	90
MUC17	140453	bcgsc.ca	37	7	100681404	100681404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MUC17	NM_001040105	exon3	c.A6707G	p.E2236G	.	.	132	7	165	1	.	95
MUC21	394263	bcgsc.ca	37	6	30954594	30954594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MUC21	NM_001010909	exon2	c.G642C	p.E214D	.	.	275	20	133	2	.	92
MUC21	394263	bcgsc.ca	37	6	30954603	30954603	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MUC21	NM_001010909	exon2	c.G651A	p.T217T	.	.	228	22	119	4	.	92
MUC2	4583	bcgsc.ca	37	11	1092969	1092969	+	Silent	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MUC2	NM_002457	exon30	c.A4788T	p.P1596P	.	.	131	7	115	3	.	90
MUC5B	727897	bcgsc.ca	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_002458	exon17	c.A2045G	p.D682G	.	.	70	15	44	1	.	.
MUC7	4589	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71347032	71347032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MUC7	NM_001145007	exon4	c.G571T	p.A191S	.	.	320	213	423	6	.	93
MVB12B	89853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129157873	129157873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001011703	exon6	c.A559G	p.I187V	.	.	166	57	139	2	.	.
MXD1	4084	bcgsc.ca	37	2	70164403	70164403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MXD1	NM_001202513	exon5	c.A355G	p.I119V	.	.	84	4	49	0	.	226
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	16082220	16082220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYCN	NM_005378	exon2	c.A34G	p.M12V	.	.	268	120	162	0	.	1271
MYLK4	340156	bcgsc.ca	37	6	2689159	2689159	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYLK4	NM_001012418	exon4	c.T267C	p.D89D	.	.	175	6	146	1	.	150
MYO16	23026	bcgsc.ca	37	13	109777682	109777682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO16	NM_001198950	exon30	c.A3758G	p.N1253S	.	.	144	5	147	0	.	142
MYO1F	4542	bcgsc.ca	37	19	8595226	8595226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO1F	NM_012335	exon21	c.A2182G	p.K728E	.	.	126	5	68	0	.	93
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	45005391	45005391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO1G	NM_033054	exon17	c.G2226A	p.W742X	.	.	23	14	16	0	.	137
MYO5B	4645	ucsc.edu;bcgsc.ca	37	18	47367793	47367793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO5B	NM_001080467	exon35	c.T4643C	p.F1548S	.	.	38	4	48	0	.	72
MYO9A	4649	broad.mit.edu;bcgsc.ca	37	15	72190944	72190944	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO9A	NM_006901	exon25	c.T3900C	p.P1300P	.	.	235	6	237	1	.	93
NANOS2	339345	bcgsc.ca	37	19	46417923	46417923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NANOS2	NM_001029861	exon1	c.A29G	p.K10R	.	.	206	6	111	1	.	90
NAV1	89796	bcgsc.ca	37	1	201752588	201752588	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NAV1	NM_020443	exon7	c.C2412T	p.V804V	.	.	75	4	70	1	.	228
NBPF10	100132406	broad.mit.edu	37	1	145367800	145367800	+	Missense_Mutation	SNP	G	G	A	rs77814877		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001039703	exon83	c.G10396A	p.D3466N	.	.	9	4	11	0	G|1.000;|0.000	.
ND3	0	bcgsc.ca	37	MT	10197	10197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	ENST00000361227	exon1	c.G139A	p.A47T	.	.	169	49	72	0	.	.
NEK4	6787	bcgsc.ca	37	3	52800220	52800220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NEK4	NM_003157	exon3	c.T532C	p.F178L	.	.	325	8	343	1	.	358
NELL2	4753	bcgsc.ca	37	12	45269651	45269651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NELL2	NM_001145107	exon2	c.T152C	p.M51T	.	.	50	4	55	0	.	517
NISCH	11188	bcgsc.ca	37	3	52512127	52512127	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NISCH	NM_001276293	exon10	c.T1002C	p.L334L	.	.	82	4	72	0	.	93
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	281055	281055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NLRP6	NM_138329	exon4	c.G1321C	p.D441H	.	.	72	17	44	0	.	583
NME8	51314	bcgsc.ca	37	7	37927902	37927902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_016616	exon15	c.A1271G	p.D424G	.	.	114	6	145	0	.	.
NMRK1	54981	bcgsc.ca	37	9	77684874	77684874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_017881	exon5	c.A254G	p.D85G	.	.	137	6	181	0	.	.
NOL3	8996	ucsc.edu	37	16	67208753	67208753	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NOL3	NM_001185057	exon3	c.G515A	p.W172X	.	.	37	4	28	0	.	227
NOL4	8715	bcgsc.ca	37	18	31673502	31673502	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NOL4	NM_003787	exon5	c.T699C	p.A233A	.	.	64	4	101	0	.	93
NOS2	4843	bcgsc.ca	37	17	26105736	26105736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NOS2	NM_000625	exon11	c.G1261T	p.A421S	.	.	68	4	44	0	.	156
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36339602	36339602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NPHS1	NM_004646	exon9	c.G1107A	p.R369R	.	.	197	50	63	0	.	49
NR1D2	9975	bcgsc.ca	37	3	24004003	24004003	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NR1D2	NM_005126	exon5	c.T1053C	p.T351T	.	.	153	6	164	2	.	227
NT5DC3	51559	bcgsc.ca	37	12	104171847	104171847	+	Silent	SNP	C	C	T	rs145894472	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NT5DC3	NM_001031701	exon14	c.G1407A	p.K469K	.	.	90	4	79	0	C|1.000;G|0.000	228
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88472662	88472662	+	Silent	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NTRK3	NM_001012338	exon17	c.C1893A	p.A631A	.	.	74	39	51	0	.	3538
NUDT15	55270	bcgsc.ca	37	13	48619901	48619901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NUDT15	NM_018283	exon3	c.A461G	p.N154S	.	.	100	5	72	0	.	90
OC90	729330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133053841	133053841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OC90	NM_001080399	exon5	c.G275T	p.R92L	.	.	270	84	151	0	.	206
OGN	4969	ucsc.edu;bcgsc.ca	37	9	95155366	95155366	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OGN	NM_033014	exon5	c.427+2T>A	.	.	.	265	114	238	3	.	492
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3101458	3101458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR1A2	NM_012352	exon1	c.T646C	p.S216P	.	.	354	32	620	0	.	70
OR4F13P	390651	bcgsc.ca	37	15	102389252	102389252	+	RNA	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	24	4	31	0	.	.
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20612767	20612767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4N5	NM_001004724	exon1	c.C873A	p.N291K	.	.	130	65	106	0	.	69
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20215599	20215599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4Q3	NM_172194	exon1	c.C13G	p.Q5E	.	.	821	172	868	0	.	71
OR5K4	403278	bcgsc.ca	37	3	98073236	98073236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR5K4	NM_001005517	exon1	c.A539G	p.D180G	.	.	250	7	233	1	.	68
OTC	5009	bcgsc.ca	37	X	38271244	38271244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OTC	NM_000531	exon9	c.A997G	p.T333A	.	.	72	4	69	0	.	172
OTOL1	131149	bcgsc.ca	37	3	161221361	161221361	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001080440	exon4	c.T1065C	p.P355P	.	.	156	6	112	1	.	.
PAAF1	80227	bcgsc.ca	37	11	73638346	73638346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PAAF1	NM_025155	exon12	c.A1118G	p.K373R	.	.	155	5	167	1	.	70
PABPC1	26986	bcgsc.ca	37	8	101717259	101717259	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PABPC1	NM_002568	exon13	c.A1713G	p.Q571Q	.	.	199	6	91	0	.	68
PALLD	23022	bcgsc.ca	37	4	169432777	169432777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PALLD	NM_001166108	exon2	c.A122G	p.K41R	.	.	89	4	95	0	.	94
PALM2	114299	bcgsc.ca	37	9	112704977	112704977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PALM2	NM_053016	exon7	c.A508G	p.M170V	.	.	166	6	185	0	.	71
PAXBP1	94104	bcgsc.ca	37	21	34132300	34132300	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_013329	exon6	c.A981G	p.Q327Q	.	.	133	5	131	0	.	.
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	56106175	56106177	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDH15	NM_001142763	exon7	c.557_559del	p.186_187del	.	.	158	62	135	0	.	193
PCDHGA3	56112	bcgsc.ca	37	5	140723847	140723847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDHGA3	NM_032011	exon1	c.A247G	p.S83G	.	.	84	4	112	0	.	68
PCDHGA5	56110	bcgsc.ca	37	5	140745243	140745243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDHGA5	NM_032054	exon1	c.C1346T	p.P449L	.	.	35	4	26	0	.	35
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140741069	140741069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDHGB2	NM_018923	exon1	c.C1367T	p.S456F	.	.	130	57	161	1	.	33
PCOLCE	5118	bcgsc.ca	37	7	100204221	100204221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCOLCE	NM_002593	exon6	c.C908T	p.P303L	.	.	70	4	42	0	.	514
PDCD11	22984	bcgsc.ca	37	10	105200555	105200555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PDCD11	NM_014976	exon30	c.T4505C	p.V1502A	.	.	102	6	81	0	.	275
PDE10A	10846	bcgsc.ca	37	6	165808744	165808744	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PDE10A	NM_001130690	exon15	c.T1431C	p.F477F	.	.	154	6	157	0	.	519
PDE1A	5136	bcgsc.ca	37	2	183053767	183053767	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PDE1A	NM_001258312	exon12	c.A1206G	p.L402L	.	.	76	4	83	0	.	93
PDZD11	51248	bcgsc.ca	37	X	69507670	69507670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PDZD11	NM_016484	exon5	c.A239G	p.D80G	.	.	137	5	139	0	.	130
PGAP3	93210	bcgsc.ca	37	17	37830247	37830247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PGAP3	NM_033419	exon5	c.A556G	p.R186G	.	.	69	5	62	0	.	91
PHACTR4	65979	bcgsc.ca	37	1	28817464	28817464	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PHACTR4	NM_023923	exon10	c.T1848C	p.P616P	.	.	140	5	111	0	.	90
PHF20	51230	bcgsc.ca	37	20	34487490	34487490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PHF20	NM_016436	exon10	c.T1481C	p.V494A	.	.	186	7	134	2	.	515
PIKFYVE	200576	bcgsc.ca	37	2	209201619	209201619	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PIKFYVE	NM_015040	exon28	c.T4578C	p.S1526S	.	.	143	5	100	0	.	583
PKD2L1	9033	bcgsc.ca	37	10	102049825	102049825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PKD2L1	NM_016112	exon14	c.T2197C	p.S733P	.	.	83	4	65	1	.	94
PKLR	5313	bcgsc.ca	37	1	155263278	155263278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PKLR	NM_000298	exon8	c.A1220G	p.E407G	.	.	190	9	155	2	.	229
PLA2G12A	81579	bcgsc.ca	37	4	110638760	110638760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLA2G12A	NM_030821	exon3	c.T395C	p.L132P	.	.	201	6	245	1	.	226
PLEKHA5	54477	bcgsc.ca	37	12	19410370	19410370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHA5	NM_001143821	exon6	c.T436C	p.S146P	.	.	76	4	110	2	.	227
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6530878	6530878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHG5	NM_001265592	exon15	c.C1696T	p.R566W	.	.	75	47	52	0	.	652
PLEKHG7	440107	bcgsc.ca	37	12	93134714	93134714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHG7	NM_001004330	exon3	c.A89G	p.E30G	.	.	69	4	99	0	.	23
PLEKHM1	9842	bcgsc.ca	37	17	43552910	43552910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHM1	NM_014798	exon4	c.A479G	p.E160G	.	.	125	6	140	4	.	90
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	132192587	132192587	+	Missense_Mutation	SNP	G	G	A	rs200648753		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLXNA4	NM_001105543	exon2	c.C866T	p.A289V	.	.	81	36	62	1	G|0.999;A|0.000	91
PNLIPRP1	5407	bcgsc.ca	37	10	118357583	118357583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PNLIPRP1	NM_006229	exon8	c.G719A	p.G240D	.	.	110	5	104	0	.	154
PNLIPRP1	5407	bcgsc.ca	37	10	118357631	118357631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PNLIPRP1	NM_006229	exon8	c.A767G	p.K256R	.	.	85	4	71	0	.	154
PODNL1	79883	bcgsc.ca	37	19	14046856	14046856	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PODNL1	NM_024825	exon4	c.C342T	p.G114G	.	.	54	4	40	0	.	90
POLE	5426	bcgsc.ca	37	12	133252753	133252753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	POLE	NM_006231	exon10	c.A947G	p.D316G	.	.	53	4	49	0	.	233
POLR2H	5437	broad.mit.edu	37	3	184082924	184082924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	POLR2H	NM_006232	exon3	c.A161G	p.D54G	.	.	341	7	315	2	.	90
POMGNT1	55624	bcgsc.ca	37	1	46654574	46654574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	POMGNT1	NM_001243766	exon23	c.C2064A	p.F688L	.	.	64	4	66	0	.	91
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77746417	77746417	+	Missense_Mutation	SNP	G	G	A	rs148466370		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	POMT2	NM_013382	exon17	c.C1732T	p.R578C	.	.	96	37	74	0	G|1.000;A|0.000	91
POTEJ	653781	bcgsc.ca;mdanderson.org	37	2	131414998	131414998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	120	40	87	2	.	.
PPIA	5478	bcgsc.ca	37	7	44839299	44839299	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PPIA	NM_021130	exon4	c.190-2A>G	.	.	.	65	4	55	0	.	90
PPM1L	151742	bcgsc.ca	37	3	160474275	160474275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PPM1L	NM_139245	exon1	c.A179G	p.K60R	.	.	152	7	72	1	.	658
PQLC2	54896	bcgsc.ca	37	1	19653752	19653752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PQLC2	NM_001040125	exon7	c.A650G	p.Y217C	.	.	95	4	117	0	.	90
PRDM2	7799	bcgsc.ca	37	1	14107544	14107544	+	Missense_Mutation	SNP	T	T	C	rs144904235	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRDM2	NM_015866	exon8	c.T3254C	p.V1085A	.	.	160	5	270	2	T|1.000;C|0.000	116
PREPL	9581	bcgsc.ca	37	2	44571018	44571018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PREPL	NM_001171603	exon5	c.T482C	p.I161T	.	.	192	7	133	0	.	91
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	.	.	187	8	92	0	.	90
PROSER1	80209	bcgsc.ca	37	13	39591653	39591653	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_025138	exon10	c.A759G	p.K253K	.	.	65	4	113	1	.	.
PRPF19	27339	bcgsc.ca	37	11	60666727	60666727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRPF19	NM_014502	exon11	c.T878C	p.V293A	.	.	121	5	116	1	.	91
PRR14L	253143	bcgsc.ca	37	22	32112266	32112266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRR14L	NM_173566	exon4	c.A1559G	p.E520G	.	.	150	5	161	1	.	91
PRRT1	80863	broad.mit.edu;mdanderson.org	37	6	32118206	32118206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRRT1	NM_030651	exon2	c.C497A	p.P166H	.	.	32	6	14	0	.	153
PRRT3	285368	hgsc.bcm.edu	37	3	9988526	9988526	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRRT3	NM_207351	exon4	c.G2331T	p.S777S	.	.	12	11	2	0	.	90
PRSS3	5646	bcgsc.ca	37	9	33794814	33794814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRSS3	NM_001197097	exon2	c.T25C	p.F9L	.	.	161	5	147	0	.	90
PSMD4	5710	bcgsc.ca	37	1	151236478	151236478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PSMD4	NM_002810	exon3	c.T256C	p.F86L	.	.	127	5	106	1	.	90
PSPC1	55269	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	20277467	20277467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PSPC1	NM_001042414	exon10	c.C1420A	p.Q474K	.	.	606	42	655	0	.	135
PTPRD	5789	bcgsc.ca	37	9	8528617	8528617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PTPRD	NM_001040712	exon4	c.A515G	p.N172S	.	.	61	4	99	0	.	912
PTPRQ	374462	bcgsc.ca	37	12	80878230	80878230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001145026	exon6	c.A689G	p.D230G	.	.	68	4	67	0	.	.
PXDNL	137902	bcgsc.ca	37	8	52505224	52505224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PXDNL	NM_144651	exon3	c.A271G	p.R91G	.	.	53	4	59	0	.	70
PZP	5858	bcgsc.ca	37	12	9304203	9304203	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PZP	NM_002864	exon33	c.A4278G	p.E1426E	.	.	79	4	72	0	.	157
R3HDM2	22864	bcgsc.ca	37	12	57648685	57648685	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	R3HDM2	NM_014925	exon22	c.T2802C	p.A934A	.	.	64	5	38	0	.	92
RAB40A	142684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102755566	102755566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAB40A	NM_080879	exon3	c.A119T	p.E40V	.	.	281	104	236	0	.	227
RAD54L	8438	bcgsc.ca	37	1	46739114	46739114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAD54L	NM_003579	exon13	c.A1463G	p.K488R	.	.	146	6	106	0	.	229
RALGAPA2	57186	bcgsc.ca	37	20	20505504	20505504	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RALGAPA2	NM_020343	exon29	c.A3732G	p.A1244A	.	.	128	5	125	0	.	24
RAPGEF4	11069	bcgsc.ca	37	2	173861242	173861242	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAPGEF4	NM_007023	exon16	c.A1539G	p.L513L	.	.	290	7	211	0	.	274
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	86637134	86637134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RASA1	NM_002890	exon6	c.A1045T	p.K349X	.	.	145	49	167	0	.	661
RASAL2	9462	bcgsc.ca	37	1	178433443	178433443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RASAL2	NM_170692	exon15	c.T3283C	p.S1095P	.	.	125	5	118	0	.	155
RAVER2	55225	bcgsc.ca	37	1	65243336	65243336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAVER2	NM_018211	exon3	c.C347T	p.A116V	.	.	150	5	138	0	.	135
RBPMS	11030	bcgsc.ca	37	8	30416459	30416459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RBPMS	NM_006867	exon7	c.T584C	p.F195S	.	.	30	4	43	0	.	91
RDM1	201299	bcgsc.ca	37	17	34247245	34247245	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RDM1	NM_145654	exon6	c.C699T	p.P233P	.	.	145	5	135	0	.	228
REV3L	5980	bcgsc.ca	37	6	111650936	111650936	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	REV3L	NM_002912	exon25	c.A8040G	p.S2680S	.	.	57	5	47	0	.	294
RFK	55312	bcgsc.ca	37	9	79007335	79007335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RFK	NM_018339	exon2	c.T233C	p.M78T	.	.	87	4	98	0	.	115
RFX1	5989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14092957	14092957	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RFX1	NM_002918	exon5	c.C597T	p.T199T	.	.	103	50	87	0	.	92
RHCE	6006	bcgsc.ca	37	1	25712322	25712322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RHCE	NM_020485	exon7	c.G953A	p.R318Q	.	.	80	4	133	0	.	90
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73811891	73811891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RLIM	NM_183353	exon5	c.T1259A	p.M420K	.	.	185	88	160	0	.	228
RPA1	6117	bcgsc.ca	37	17	1782950	1782950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RPA1	NM_002945	exon11	c.A1049G	p.D350G	.	.	58	4	88	0	.	651
RPLP0P2	113157	broad.mit.edu	37	11	61405191	61405191	+	RNA	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	22	2	22	0	.	.
RUSC1	23623	bcgsc.ca	37	1	155292360	155292360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RUSC1	NM_001105203	exon2	c.T796C	p.W266R	.	.	157	6	121	0	.	92
RUSC1-AS1	284618	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	155290718	155290718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001039517	exon2	c.G562T	p.G188W	.	.	41	13	18	0	.	.
RXRB	6257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33165688	33165688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RXRB	NM_021976	exon4	c.G671T	p.G224V	.	.	201	43	117	2	.	189
RYR2	6262	bcgsc.ca	37	1	237754235	237754235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RYR2	NM_001035	exon31	c.C4103A	p.P1368Q	.	.	62	4	59	0	.	158
SALL2	6297	bcgsc.ca	37	14	21993361	21993361	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SALL2	NM_005407	exon2	c.T501C	p.P167P	.	.	81	8	46	3	.	92
SAMD7	344658	bcgsc.ca	37	3	169644352	169644352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SAMD7	NM_182610	exon6	c.A302G	p.E101G	.	.	68	4	51	1	.	91
SAR1A	56681	bcgsc.ca	37	10	71912282	71912282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SAR1A	NM_020150	exon7	c.A547G	p.R183G	.	.	75	4	45	0	.	227
SASH1	23328	bcgsc.ca	37	6	148865484	148865484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SASH1	NM_015278	exon18	c.A2878G	p.T960A	.	.	61	4	55	0	.	90
SCN1A	6323	broad.mit.edu;bcgsc.ca	37	2	166897747	166897747	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SCN1A	NM_001165963	exon13	c.A2409G	p.G803G	.	.	143	6	98	0	.	147
SDHAP1	255812	ucsc.edu	37	3	195690271	195690271	+	RNA	SNP	T	T	C	rs71248938		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	98	22	82	10	T|0.500;C|0.500	.
SDR39U1	56948	bcgsc.ca	37	14	24910066	24910066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SDR39U1	NM_020195	exon5	c.T395C	p.F132S	.	.	117	5	103	0	.	46
SEC14L5	9717	bcgsc.ca	37	16	5041890	5041890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_014692	exon6	c.T526C	p.S176P	.	.	49	4	62	0	.	.
SEL1L	6400	bcgsc.ca	37	14	81969227	81969227	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SEL1L	NM_001244984	exon6	c.A615G	p.E205E	.	.	78	4	90	0	.	227
SERPINF1	5176	bcgsc.ca	37	17	1679876	1679876	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SERPINF1	NM_002615	exon7	c.C837T	p.P279P	.	.	45	4	76	0	.	227
SEZ6L	23544	bcgsc.ca	37	22	26688913	26688913	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SEZ6L	NM_021115	exon2	c.C636T	p.A212A	.	.	103	5	75	0	.	95
SF3B2	10992	bcgsc.ca	37	11	65829412	65829412	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SF3B2	NM_006842	exon16	c.A1920G	p.G640G	.	.	159	8	138	0	.	92
SH3GL3	6457	bcgsc.ca	37	15	84233939	84233939	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SH3GL3	NM_003027	exon3	c.A168G	p.E56E	.	.	93	4	106	0	.	92
SHF	90525	ucsc.edu;bcgsc.ca	37	15	45465913	45465913	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SHF	NM_138356	exon5	c.T654C	p.V218V	.	.	42	4	44	0	.	69
SLC11A1	6556	bcgsc.ca	37	2	219249947	219249947	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC11A1	NM_000578	exon4	c.A351G	p.T117T	.	.	111	5	50	0	.	93
SLC13A1	6561	bcgsc.ca	37	7	122763255	122763255	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC13A1	NM_022444	exon12	c.A1275G	p.K425K	.	.	85	6	89	0	.	92
SLC13A1	6561	bcgsc.ca	37	7	122811892	122811892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC13A1	NM_022444	exon3	c.A295G	p.I99V	.	.	241	6	303	0	.	92
SLC15A3	51296	bcgsc.ca	37	11	60711205	60711205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC15A3	NM_016582	exon3	c.C952T	p.P318S	.	.	168	6	164	1	.	90
SLC34A3	142680	broad.mit.edu;bcgsc.ca	37	9	140127320	140127320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC34A3	NM_001177317	exon5	c.C389T	p.A130V	.	.	62	5	48	0	.	90
SLC44A4	80736	broad.mit.edu	37	6	31839284	31839284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC44A4	NM_025257	exon8	c.T584C	p.I195T	.	.	336	6	185	1	.	156
SLC6A7	6534	bcgsc.ca	37	5	149585119	149585119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLC6A7	NM_014228	exon13	c.T1634C	p.L545P	.	.	75	4	74	0	.	90
SLC9A7P1	121456	bcgsc.ca	37	12	98848779	98848779	+	RNA	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	54	5	59	0	.	.
SLU7	10569	bcgsc.ca	37	5	159831817	159831817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SLU7	NM_006425	exon14	c.A1463G	p.E488G	.	.	124	5	153	2	.	91
SMARCAD1	56916	bcgsc.ca	37	4	95129665	95129665	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SMARCAD1	NM_001128429	exon2	c.T120C	p.A40A	.	.	172	6	200	0	.	229
SNED1	25992	bcgsc.ca	37	2	242027799	242027799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SNED1	NM_001080437	exon31	c.A4225G	p.T1409A	.	.	57	4	44	0	.	72
SNX4	8723	bcgsc.ca	37	3	125216737	125216737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SNX4	NM_003794	exon4	c.A490G	p.R164G	.	.	190	6	119	0	.	229
SOX30	11063	bcgsc.ca	37	5	157053478	157053478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SOX30	NM_178424	exon5	c.T2132C	p.V711A	.	.	154	5	162	0	.	91
SPEN	23013	bcgsc.ca	37	1	16259118	16259118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SPEN	NM_015001	exon11	c.A6383G	p.Q2128R	.	.	55	4	89	0	.	298
SPOCD1	90853	bcgsc.ca	37	1	32256671	32256671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SPOCD1	NM_144569	exon16	c.A3184G	p.T1062A	.	.	95	5	80	0	.	158
SPPL2B	56928	broad.mit.edu;bcgsc.ca	37	19	2345304	2345304	+	RNA	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	145	6	80	0	.	.
SRC	6714	bcgsc.ca	37	20	36030912	36030912	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SRC	NM_005417	exon12	c.G1191A	p.V397V	.	.	140	5	88	0	.	2731
SRCAP	10847	broad.mit.edu;bcgsc.ca	37	16	30721368	30721368	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SRCAP	NM_006662	exon8	c.T1053C	p.S351S	.	.	81	5	105	0	.	94
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77333366	77333366	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ST6GALNAC5	NM_030965	exon1	c.G6A	p.K2K	.	.	118	52	115	0	.	92
STAM2	10254	bcgsc.ca	37	2	153032151	153032151	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STAM2	NM_005843	exon1	c.T6C	p.P2P	.	.	79	8	42	0	.	187
STK24	8428	ucsc.edu	37	13	99109437	99109437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STK24	NM_003576	exon10	c.T1280C	p.V427A	.	.	40	4	25	0	.	979
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61784645	61784645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STRADA	NM_001003787	exon9	c.A715G	p.K239E	.	.	73	48	29	0	.	547
STX16	8675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57246217	57246217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STX16	NM_001001433	exon7	c.C656A	p.T219K	.	.	129	34	106	1	.	91
SUCLG2	8801	broad.mit.edu	37	3	67659901	67659901	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SUCLG2	NM_001177599	exon2	c.T204C	p.A68A	.	.	220	6	216	1	.	227
SUN1	23353	bcgsc.ca	37	7	899952	899952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SUN1	NM_001130965	exon14	c.A1712G	p.Q571R	.	.	78	5	50	1	.	90
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64520042	64520042	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SYNE2	NM_182914	exon48	c.C9411T	p.L3137L	.	.	169	68	213	0	.	164
TANC1	85461	bcgsc.ca	37	2	160085368	160085368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TANC1	NM_033394	exon26	c.A4112G	p.E1371G	.	.	166	6	117	0	.	92
TBC1D1	23216	bcgsc.ca	37	4	37903986	37903986	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TBC1D1	NM_015173	exon2	c.T270C	p.Y90Y	.	.	115	5	105	2	.	91
TBC1D15	64786	bcgsc.ca	37	12	72274366	72274366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TBC1D15	NM_001146214	exon5	c.A346G	p.R116G	.	.	166	5	143	0	.	90
TBC1D3P1-DHX40P1	653645	bcgsc.ca	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	581	26	402	10	.	.
TBC1D8	11138	bcgsc.ca	37	2	101670666	101670666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TBC1D8	NM_001102426	exon4	c.T490C	p.S164P	.	.	82	4	70	3	.	25
TBRG1	84897	bcgsc.ca	37	11	124496923	124496923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TBRG1	NM_032811	exon5	c.A715G	p.K239E	.	.	148	6	119	0	.	68
TEPP	374739	bcgsc.ca	37	16	58011902	58011902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TEPP	NM_199046	exon2	c.T347C	p.L116P	.	.	52	4	47	0	.	92
TFPI	7035	bcgsc.ca	37	2	188343523	188343523	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TFPI	NM_001032281	exon7	c.A636G	p.K212K	.	.	132	5	84	0	.	91
TMED10P1	286102	ucsc.edu	37	8	146220994	146220994	+	RNA	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	33	4	26	0	.	.
TMEM132D	121256	bcgsc.ca	37	12	129558852	129558852	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMEM132D	NM_133448	exon9	c.A2868G	p.E956E	.	.	148	5	140	0	.	106
TMEM132E	124842	bcgsc.ca	37	17	32954052	32954052	+	Missense_Mutation	SNP	C	C	T	rs112576629	byfrequency;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMEM132E	NM_207313	exon3	c.C704T	p.P235L	.	.	76	4	46	0	C|0.997;G|0.003	68
TMEM173	340061	bcgsc.ca	37	5	138861218	138861218	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMEM173	NM_198282	exon3	c.T72C	p.V24V	.	.	109	5	93	0	.	69
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	83250808	83250808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMTC2	NM_152588	exon2	c.C103T	p.Q35X	.	.	158	57	134	0	.	92
TNFRSF10B	8795	bcgsc.ca	37	8	22888374	22888374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TNFRSF10B	NM_147187	exon3	c.T262C	p.S88P	.	.	83	5	112	1	.	1083
TNFSF10	8743	broad.mit.edu	37	3	172224537	172224537	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TNFSF10	NM_003810	exon5	c.A591G	p.K197K	.	.	1281	9	796	2	.	662
TOM1	10043	bcgsc.ca	37	22	35713912	35713912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TOM1	NM_001135732	exon2	c.T95C	p.L32P	.	.	160	6	107	1	.	91
TOR1A	1861	bcgsc.ca	37	9	132576337	132576337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TOR1A	NM_000113	exon5	c.A913G	p.T305A	.	.	262	11	236	7	.	90
TPO	7173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1497607	1497607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TPO	NM_001206744	exon11	c.C1802A	p.P601H	.	.	107	46	63	1	.	332
TRABD2A	129293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85066338	85066338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001080824	exon3	c.A779C	p.Y260S	.	.	193	23	131	0	.	.
TRAP1	10131	bcgsc.ca	37	16	3714320	3714320	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRAP1	NM_016292	exon13	c.A1524G	p.A508A	.	.	91	5	89	0	.	226
TRAPPC9	83696	bcgsc.ca	37	8	140743327	140743327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRAPPC9	NM_031466	exon23	c.T3718C	p.C1240R	.	.	71	5	34	0	.	228
TRIM66	9866	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8662439	8662439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRIM66	NM_014818	exon9	c.C1048A	p.P350T	.	.	71	21	49	1	.	68
TRMT1L	81627	bcgsc.ca	37	1	185108556	185108556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRMT1L	NM_030934	exon9	c.T1265C	p.V422A	.	.	189	6	118	0	.	92
TRPM6	140803	bcgsc.ca	37	9	77415190	77415190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRPM6	NM_017662	exon17	c.A2218G	p.R740G	.	.	128	5	159	1	.	335
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116616801	116616801	+	Silent	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRPS1	NM_014112	exon4	c.A1395T	p.L465L	.	.	238	63	106	0	.	229
TRPV2	51393	bcgsc.ca	37	17	16321049	16321049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRPV2	NM_016113	exon2	c.T67C	p.S23P	.	.	64	4	84	0	.	91
TRRAP	8295	broad.mit.edu;bcgsc.ca	37	7	98547091	98547091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRRAP	NM_001244580	exon35	c.A4819T	p.N1607Y	.	.	126	5	117	0	.	923
TTC40	54777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134663787	134663787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001200049	exon41	c.C5913A	p.D1971E	.	.	128	37	64	1	.	.
TTN	7273	bcgsc.ca	37	2	179473523	179473523	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TTN	NM_001267550	exon274	c.T52215C	p.T17405T	.	.	206	6	173	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179472788	179472788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TTN	NM_001267550	exon276	c.C52726T	p.P17576S	.	.	172	78	120	0	.	636
TUBB8	347688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94784	94784	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TUBB8	NM_177987	exon2	c.G126T	p.L42L	.	.	63	30	38	0	.	69
TULP3	7289	bcgsc.ca	37	12	3039419	3039419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TULP3	NM_003324	exon5	c.T400C	p.S134P	.	.	64	5	72	0	.	226
UBN1	29855	bcgsc.ca	37	16	4907996	4907996	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	UBN1	NM_001079514	exon3	c.A255G	p.K85K	.	.	69	4	93	0	.	92
UBXN10	127733	bcgsc.ca	37	1	20517420	20517420	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	UBXN10	NM_152376	exon2	c.A366G	p.R122R	.	.	75	4	123	1	.	91
ULK4	54986	bcgsc.ca	37	3	41504691	41504691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ULK4	NM_017886	exon33	c.G3280T	p.D1094Y	.	.	191	6	184	2	.	297
USP48	84196	bcgsc.ca	37	1	22062983	22062983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USP48	NM_001032730	exon9	c.A1127G	p.K376R	.	.	106	5	199	0	.	659
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75277370	75277370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USP54	NM_152586	exon18	c.A2814G	p.P938P	.	.	260	137	170	0	.	721
USP6NL	9712	bcgsc.ca	37	10	11531209	11531209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USP6NL	NM_001080491	exon9	c.T607C	p.C203R	.	.	84	4	78	0	.	628
USPL1	10208	bcgsc.ca	37	13	31205193	31205193	+	Silent	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USPL1	NM_005800	exon4	c.G450T	p.S150S	.	.	61	4	64	0	.	524
UTRN	7402	broad.mit.edu;bcgsc.ca	37	6	144876004	144876004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	UTRN	NM_007124	exon48	c.T7109C	p.L2370P	.	.	198	6	120	0	.	95
VCAM1	7412	bcgsc.ca	37	1	101198045	101198045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VCAM1	NM_001078	exon7	c.A1597G	p.T533A	.	.	68	4	68	0	.	90
VCAN	1462	bcgsc.ca	37	5	82837882	82837882	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VCAN	NM_004385	exon8	c.A9060G	p.R3020R	.	.	87	5	79	1	.	238
VCAN	1462	bcgsc.ca	37	5	82849340	82849340	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VCAN	NM_004385	exon11	c.T9651C	p.N3217N	.	.	98	4	74	0	.	238
VIPAS39	63894	broad.mit.edu	37	14	77920369	77920369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001193314	exon2	c.A77G	p.D26G	.	.	162	6	152	1	.	.
VPS13D	55187	bcgsc.ca	37	1	12374339	12374339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VPS13D	NM_015378	exon30	c.A7103G	p.N2368S	.	.	154	6	199	1	.	95
VPS13D	55187	bcgsc.ca	37	1	12520287	12520287	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VPS13D	NM_015378	exon67	c.T12498C	p.T4166T	.	.	69	4	88	0	.	95
VRK3	51231	bcgsc.ca	37	19	50512636	50512636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VRK3	NM_016440	exon4	c.A146G	p.K49R	.	.	136	5	106	0	.	359
VWA3A	146177	bcgsc.ca	37	16	22132915	22132915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	VWA3A	NM_173615	exon14	c.A1333G	p.T445A	.	.	68	4	103	1	.	1
VWA8	23078	bcgsc.ca	37	13	42164890	42164890	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_015058	exon41	c.A4998G	p.K1666K	.	.	268	10	268	0	.	.
VWA8	23078	ucsc.edu;bcgsc.ca	37	13	42301352	42301352	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_015058	exon24	c.C2736T	p.G912G	.	.	30	4	51	0	.	.
WASH2P	375260	broad.mit.edu	37	2	114353290	114353290	+	RNA	SNP	T	T	C	rs11267060		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	52	10	34	0	.	.
WBSCR17	64409	bcgsc.ca	37	7	70853378	70853378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WBSCR17	NM_022479	exon3	c.A580G	p.S194G	.	.	82	4	77	0	.	96
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49982649	49982649	+	Silent	SNP	C	C	T	rs115706447	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WDFY4	NM_020945	exon14	c.C2700T	p.P900P	.	.	63	34	40	0	C|0.993;T|0.007	22
WDR20	91833	bcgsc.ca	37	14	102676162	102676162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WDR20	NM_001242417	exon4	c.A1748G	p.E583G	.	.	79	4	74	0	.	90
WDR3	10885	bcgsc.ca	37	1	118495182	118495182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WDR3	NM_006784	exon19	c.T2048C	p.V683A	.	.	73	4	66	0	.	91
WDR66	144406	bcgsc.ca	37	12	122404977	122404977	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WDR66	NM_144668	exon16	c.2607+2T>C	.	.	.	83	4	76	0	.	92
WDR87	83889	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	38378503	38378503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_031951	exon6	c.G5691C	p.Q1897H	.	.	451	122	302	0	.	.
WDR87	83889	ucsc.edu	37	19	38378502	38378502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_031951	exon6	c.G5692T	p.E1898X	.	.	451	128	301	3	.	.
YAP1	10413	bcgsc.ca	37	11	102100651	102100651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	YAP1	NM_001130145	exon9	c.A1495G	p.S499G	.	.	122	5	103	0	.	659
YIPF2	78992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11034659	11034659	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	YIPF2	NM_024029	exon7	c.C501T	p.I167I	.	.	22	10	27	0	.	90
ZBED4	9889	bcgsc.ca	37	22	50277458	50277458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZBED4	NM_014838	exon2	c.A148G	p.K50E	.	.	79	4	61	0	.	92
ZBTB40	9923	bcgsc.ca	37	1	22850771	22850771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZBTB40	NM_001083621	exon18	c.A3359G	p.Q1120R	.	.	57	4	88	0	.	91
ZC3HC1	51530	ucsc.edu;bcgsc.ca	37	7	129664107	129664107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZC3HC1	NM_016478	exon7	c.A1016G	p.E339G	.	.	27	4	23	0	.	90
ZCWPW2	152098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	28566047	28566047	+	Silent	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZCWPW2	NM_001040432	exon9	c.A939T	p.A313A	.	.	326	79	323	0	.	24
ZDHHC1	29800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67432171	67432171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZDHHC1	NM_013304	exon8	c.G871C	p.A291P	.	.	92	74	74	0	.	90
ZFAND2B	130617	bcgsc.ca	37	2	220074006	220074006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZFAND2B	NM_138802	exon9	c.C752T	p.P251L	.	.	134	5	65	0	.	68
ZFAND4	93550	bcgsc.ca	37	10	46143867	46143867	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001128324	exon5	c.A444G	p.G148G	.	.	211	6	204	0	.	.
ZFC3H1	196441	bcgsc.ca	37	12	72008677	72008677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZFC3H1	NM_144982	exon29	c.A5297G	p.E1766G	.	.	152	6	152	1	.	138
ZFP69B	65243	broad.mit.edu	37	1	40928260	40928260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_023070	exon5	c.C604A	p.Q202K	.	.	120	4	138	2	.	.
ZFPM2	23414	bcgsc.ca	37	8	106814143	106814143	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZFPM2	NM_012082	exon8	c.T1833C	p.A611A	.	.	227	6	131	1	.	139
ZFYVE26	23503	bcgsc.ca	37	14	68274124	68274124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZFYVE26	NM_015346	exon5	c.T877C	p.S293P	.	.	67	4	71	0	.	162
ZKSCAN1	7586	bcgsc.ca	37	7	99631373	99631373	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZKSCAN1	NM_003439	exon6	c.T1245C	p.S415S	.	.	61	4	86	1	.	93
ZNF107	51427	bcgsc.ca	37	7	64168920	64168920	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF107	NM_016220	exon7	c.A2238G	p.K746K	.	.	78	4	79	0	.	69
ZNF134	7693	bcgsc.ca	37	19	58130842	58130842	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF134	NM_003435	exon2	c.T6C	p.T2T	.	.	129	5	72	0	.	226
ZNF197	10168	bcgsc.ca	37	3	44672649	44672649	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF197	NM_001024855	exon3	c.A486G	p.A162A	.	.	137	6	117	1	.	230
ZNF234	10780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44661606	44661606	+	Silent	SNP	C	C	G	rs182811010	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_006630	exon6	c.C1437G	p.T479T	.	.	148	42	126	0	C|0.999;T|0.001	.
ZNF271	10778	ucsc.edu	37	18	32888395	32888395	+	RNA	SNP	A	A	G	rs12607752	byfrequency	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF271	.	.	.	.	.	.	56	7	60	0	A|0.500;G|0.500	90
ZNF271	10778	ucsc.edu	37	18	32888401	32888401	+	RNA	SNP	A	A	G	rs74831732		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF271	.	.	.	.	.	.	57	10	62	0	A|0.250;G|0.750	90
ZNF335	63925	broad.mit.edu;bcgsc.ca	37	20	44592119	44592119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF335	NM_022095	exon9	c.C1526T	p.S509L	.	.	33	6	28	0	.	94
ZNF3	7551	bcgsc.ca	37	7	99672856	99672856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF3	NM_032924	exon5	c.T173C	p.V58A	.	.	86	4	124	0	.	91
ZNF407	55628	bcgsc.ca	37	18	72344877	72344877	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF407	NM_001146190	exon1	c.A1902G	p.K634K	.	.	143	5	125	0	.	92
ZNF473	25888	bcgsc.ca	37	19	50548503	50548503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF473	NM_015428	exon5	c.A803G	p.N268S	.	.	140	5	69	0	.	91
ZNF546	339327	bcgsc.ca	37	19	40520485	40520485	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF546	NM_178544	exon7	c.T1308C	p.T436T	.	.	81	4	39	0	.	155
ZNF564	163050	broad.mit.edu	37	19	12637689	12637689	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF564	NM_144976	exon4	c.C1233T	p.H411H	.	.	155	5	99	0	.	91
ZNF571	51276	bcgsc.ca	37	19	38055809	38055809	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF571	NM_016536	exon4	c.T1521C	p.C507C	.	.	302	8	190	0	.	90
ZNF613	79898	bcgsc.ca	37	19	52448287	52448287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF613	NM_001031721	exon6	c.A1151G	p.K384R	.	.	187	6	109	0	.	91
ZNF777	27153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152476	149152476	+	Missense_Mutation	SNP	G	G	A	rs201407206		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF777	NM_015694	exon2	c.C638T	p.T213M	.	.	161	61	167	1	G|0.999;A|0.001	136
ZNF800	168850	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127013575	127013575	+	Silent	SNP	G	G	T	rs76411607	byfrequency;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF800	NM_176814	exon5	c.C1815A	p.V605V	.	.	248	85	327	2	G|0.982;A|0.018	23
ZNF83	55769	bcgsc.ca	37	19	53116804	53116804	+	Silent	SNP	G	G	A	rs192432041	by1000genomes	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF83	NM_018300	exon3	c.C1014T	p.I338I	.	.	268	18	142	2	G|0.999;A|0.001	91
ZSCAN30	100101467	bcgsc.ca	37	18	32833647	32833647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZSCAN30	NM_001166012	exon5	c.T1252C	p.C418R	.	.	149	5	256	0	.	68
ZSCAN5A	79149	broad.mit.edu;bcgsc.ca	37	19	56732953	56732953	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZSCAN5A	NM_024303	exon5	c.T1482C	p.T494T	.	.	474	10	258	0	.	155
MICAL3	57553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18385513	18385514	+	Splice_Site	DNP	CC	CC	AA	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	.	.	.	.	.	.	.	.	.	.	.	
