Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASDH	132949	bcgsc.ca	37	4	57220341	57220341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AASDH	NM_181806	exon8	c.T1247C	p.V416A	.	.	161	6	173	0	.	94
ABCA10	10349	bcgsc.ca	37	17	67190567	67190567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ABCA10	NM_080282	exon13	c.C1304T	p.T435I	.	.	186	6	189	0	.	93
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87196165	87196165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ABCB1	NM_000927	exon7	c.A466T	p.M156L	.	.	133	23	147	0	.	582
ABCB4	5244	bcgsc.ca	37	7	87046777	87046777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ABCB4	NM_018850	exon21	c.G2533A	p.G845S	.	.	126	6	136	1	.	96
ABHD2	11057	bcgsc.ca	37	15	89731510	89731510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ABHD2	NM_007011	exon12	c.T902C	p.M301T	.	.	145	5	114	0	.	227
ACACA	31	bcgsc.ca	37	17	35608952	35608952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACACA	NM_198834	exon16	c.A2060G	p.N687S	.	.	108	6	93	0	.	154
ACADVL	37	bcgsc.ca	37	17	7124305	7124305	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACADVL	NM_001270447	exon7	c.C474T	p.G158G	.	.	76	4	98	0	.	93
ACP1	52	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	277013	277013	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACP1	NM_007099	exon5	c.C327T	p.T109T	.	.	241	39	277	0	.	523
ACSL4	2182	bcgsc.ca	37	X	108926704	108926704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACSL4	NM_022977	exon4	c.G12T	p.K4N	.	.	92	5	80	0	.	290
ACSL5	51703	bcgsc.ca	37	10	114169396	114169396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACSL5	NM_016234	exon7	c.A832G	p.R278G	.	.	263	7	319	0	.	154
ACTN3	89	bcgsc.ca	37	11	66326796	66326796	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ACTN3	.	.	.	.	.	.	77	5	77	0	.	90
ADAM11	4185	bcgsc.ca	37	17	42850269	42850269	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADAM11	NM_002390	exon9	c.G723A	p.V241V	.	.	146	5	123	0	.	227
ADAMTS10	81794	bcgsc.ca	37	19	8660700	8660700	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADAMTS10	NM_030957	exon12	c.A1425G	p.A475A	.	.	115	5	131	0	.	229
ADCY10	55811	bcgsc.ca	37	1	167815075	167815075	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADCY10	NM_018417	exon21	c.A2733G	p.E911E	.	.	85	4	67	0	.	493
ADCY5	111	bcgsc.ca	37	3	123051520	123051520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADCY5	NM_183357	exon4	c.T1409C	p.I470T	.	.	139	5	141	0	.	94
ADCY6	112	bcgsc.ca	37	12	49168219	49168219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADCY6	NM_020983	exon14	c.T2249C	p.V750A	.	.	156	5	151	1	.	90
ADORA1	134	bcgsc.ca	37	1	203098232	203098232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADORA1	NM_001048230	exon2	c.T263C	p.L88P	.	.	214	7	211	0	.	153
ADRBK2	157	bcgsc.ca	37	22	26086161	26086161	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ADRBK2	NM_005160	exon12	c.A963G	p.A321A	.	.	149	6	206	0	.	955
AFAP1L1	134265	bcgsc.ca	37	5	148691742	148691742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AFAP1L1	NM_001146337	exon9	c.T995C	p.L332P	.	.	150	7	119	0	.	136
AGGF1	55109	bcgsc.ca	37	5	76357602	76357602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AGGF1	NM_018046	exon13	c.A1919G	p.K640R	.	.	194	6	203	0	.	117
AGL	178	bcgsc.ca	37	1	100327836	100327836	+	Missense_Mutation	SNP	A	A	G	rs201888023	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AGL	NM_000644	exon4	c.A317G	p.Y106C	.	.	284	7	278	0	A|0.999;T|0.001	92
AGPS	8540	bcgsc.ca	37	2	178285035	178285035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AGPS	NM_003659	exon2	c.A299G	p.D100G	.	.	153	5	225	2	.	92
AHNAK2	113146	bcgsc.ca	37	14	105417955	105417955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AHNAK2	NM_138420	exon7	c.A3833G	p.H1278R	.	.	77	4	113	0	.	47
AK7	122481	bcgsc.ca	37	14	96917806	96917806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AK7	NM_152327	exon10	c.T997C	p.F333L	.	.	92	4	100	0	.	228
AKAP11	11215	bcgsc.ca	37	13	42872887	42872887	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AKAP11	NM_016248	exon7	c.T570C	p.A190A	.	.	140	5	208	0	.	227
AKAP4	8852	bcgsc.ca	37	X	49957627	49957627	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AKAP4	NM_003886	exon5	c.T1737C	p.A579A	.	.	130	5	124	0	.	540
AKAP6	9472	bcgsc.ca	37	14	33205012	33205012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AKAP6	NM_004274	exon11	c.T3296C	p.L1099P	.	.	165	6	196	0	.	733
AKR7A2	8574	bcgsc.ca	37	1	19633856	19633856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AKR7A2	NM_003689	exon4	c.T640C	p.C214R	.	.	307	8	315	3	.	90
AKT3	10000	bcgsc.ca	37	1	243800960	243800960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AKT3	NM_001206729	exon6	c.A514G	p.K172E	.	.	69	4	110	0	.	1423
ALDH6A1	4329	bcgsc.ca	37	14	74527385	74527385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALDH6A1	NM_005589	exon12	c.T1568C	p.L523P	.	.	192	6	224	0	.	90
ALDH7A1	501	bcgsc.ca	37	5	125904008	125904008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALDH7A1	NM_001202404	exon9	c.T895C	p.F299L	.	.	142	5	126	0	.	227
ALG10	84920	broad.mit.edu	37	12	34179655	34179655	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALG10	NM_032834	exon3	c.T1227C	p.P409P	.	.	421	7	459	0	.	91
ALG2	85365	ucsc.edu;bcgsc.ca	37	9	101981028	101981028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALG2	NM_033087	exon2	c.A439G	p.R147G	.	.	40	4	65	0	.	92
ALX1	8092	bcgsc.ca	37	12	85674050	85674050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ALX1	NM_006982	exon1	c.T11C	p.L4P	.	.	136	5	154	0	.	24
AMPH	273	bcgsc.ca	37	7	38431571	38431571	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AMPH	NM_001635	exon19	c.A1656G	p.E552E	.	.	85	4	78	0	.	95
ANKRD61	100310846	bcgsc.ca	37	7	6071115	6071115	+	Missense_Mutation	SNP	A	A	G	rs12334093	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001271700	exon1	c.A109G	p.M37V	.	.	212	25	186	0	A|0.886;G|0.114	.
ANKRD6	22881	bcgsc.ca	37	6	90340520	90340520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANKRD6	NM_001242809	exon16	c.A1981G	p.T661A	.	.	73	4	76	0	.	93
ANKS1A	23294	bcgsc.ca	37	6	35047622	35047622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANKS1A	NM_015245	exon16	c.C2461T	p.H821Y	.	.	75	4	62	0	.	94
ANKS6	203286	bcgsc.ca	37	9	101507924	101507924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANKS6	NM_173551	exon14	c.G2428T	p.G810C	.	.	211	6	167	1	.	92
ANKZF1	55139	bcgsc.ca	37	2	220097250	220097250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANKZF1	NM_001042410	exon5	c.T403C	p.S135P	.	.	75	4	72	0	.	92
ANKZF1	55139	bcgsc.ca	37	2	220098908	220098908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANKZF1	NM_001042410	exon9	c.A1102G	p.T368A	.	.	196	6	188	0	.	92
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	418530	418530	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ANO9	NM_001012302	exon23	c.G2190A	p.S730S	.	.	137	15	139	0	.	227
ANXA2R	389289	bcgsc.ca	37	5	43039860	43039860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001014279	exon1	c.C289A	p.Q97K	.	.	158	6	142	0	.	.
AP3B1	8546	bcgsc.ca	37	5	77523229	77523229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AP3B1	NM_003664	exon5	c.A503G	p.K168R	.	.	227	6	279	0	.	90
APBB3	10307	bcgsc.ca	37	5	139941284	139941284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	APBB3	NM_006051	exon7	c.A656G	p.D219G	.	.	135	5	102	0	.	92
APLF	200558	bcgsc.ca	37	2	68765288	68765288	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	APLF	NM_173545	exon7	c.T1089C	p.D363D	.	.	200	6	207	0	.	92
APOB	338	bcgsc.ca	37	2	21260972	21260972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	APOB	NM_000384	exon5	c.A395G	p.K132R	.	.	205	6	214	0	.	175
AQP12B	653437	ucsc.edu	37	2	241622316	241622316	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	83	19	105	0	.	.
ARHGAP15	55843	bcgsc.ca	37	2	144525669	144525669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGAP15	NM_018460	exon14	c.G1356A	p.M452I	.	.	147	5	148	0	.	653
ARHGAP42	143872	bcgsc.ca	37	11	100846846	100846846	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_152432	exon20	c.T1914C	p.S638S	.	.	171	6	143	0	.	.
ARHGDIB	397	bcgsc.ca	37	12	15102773	15102773	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGDIB	NM_001175	exon3	c.T228C	p.C76C	.	.	106	5	132	0	.	90
ARHGEF11	9826	bcgsc.ca	37	1	156906713	156906713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGEF11	NM_198236	exon40	c.A4525G	p.T1509A	.	.	203	6	159	0	.	233
ARHGEF12	23365	bcgsc.ca	37	11	120340073	120340073	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGEF12	NM_015313	exon30	c.T2931C	p.A977A	.	.	110	5	111	0	.	661
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7505118	7505118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARHGEF18	NM_001130955	exon1	c.T292A	p.S98T	.	.	111	17	109	0	.	228
ARL6IP4	51329	bcgsc.ca	37	12	123466295	123466295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARL6IP4	NM_018694	exon3	c.A707G	p.K236R	.	.	70	4	70	0	.	90
ARMCX5	64860	bcgsc.ca	37	X	101857686	101857686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ARMCX5	NM_022838	exon3	c.A617G	p.K206R	.	.	206	6	178	1	.	131
ASB11	140456	bcgsc.ca	37	X	15333622	15333622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ASB11	NM_001201583	exon1	c.A106G	p.T36A	.	.	164	5	221	0	.	289
ASCC3	10973	bcgsc.ca	37	6	100965968	100965968	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ASCC3	NM_006828	exon38	c.T5826C	p.N1942N	.	.	127	6	132	0	.	96
ASTN1	460	bcgsc.ca	37	1	176905431	176905431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ASTN1	NM_004319	exon15	c.T2453C	p.I818T	.	.	99	6	86	0	.	319
ATG14	22863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	55848812	55848812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ATG14	NM_014924	exon6	c.C745T	p.R249X	.	.	397	83	429	0	.	90
ATP2B3	492	bcgsc.ca	37	X	152821805	152821805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ATP2B3	NM_001001344	exon13	c.T2255C	p.L752P	.	.	199	6	151	0	.	109
ATP6	0	bcgsc.ca	37	MT	9181	9181	+	Missense_Mutation	SNP	A	A	G	rs2298011		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	ENST00000361899	exon1	c.A655G	p.S219G	.	.	244	7	256	0	.	.
ATP8A1	10396	bcgsc.ca	37	4	42580382	42580382	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	ATP8A1,brain,glioma,-1	ATP8A1	NM_001105529	exon12	c.A1023G	p.G341G	.	.	148	5	139	0	.	92
AUTS2	26053	bcgsc.ca	37	7	70239037	70239037	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AUTS2	NM_015570	exon12	c.T1854C	p.A618A	.	.	94	4	95	0	.	92
AXIN2	8313	hgsc.bcm.edu;bcgsc.ca	37	17	63545764	63545765	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AXIN2	NM_004655	exon3	c.829_830del	p.277_277del	.	.	95	14	127	0	.	658
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	328	2	281	1	.	90
AZU1	566	ucsc.edu	37	19	830916	830916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	AZU1	NM_001700	exon4	c.T569C	p.L190P	.	.	35	4	30	0	.	91
B3GALT1	8708	bcgsc.ca	37	2	168726050	168726050	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	B3GALT1	NM_020981	exon2	c.T501C	p.C167C	.	.	172	5	192	0	.	94
B3GNTL1	146712	bcgsc.ca	37	17	80963035	80963035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	B3GNTL1	NM_001009905	exon6	c.A460G	p.T154A	.	.	106	5	106	0	.	92
BANK1	55024	hgsc.bcm.edu	37	4	102712095	102712095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BANK1	NM_001127507	exon1	c.C58T	p.P20S	.	.	22	13	4	0	.	93
BAZ1A	11177	bcgsc.ca	37	14	35243602	35243602	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BAZ1A	NM_013448	exon19	c.A2928G	p.E976E	.	.	160	5	163	1	.	291
BAZ2A	11176	bcgsc.ca	37	12	56993110	56993110	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BAZ2A	NM_013449	exon27	c.T5211C	p.G1737G	.	.	58	4	36	0	.	22
BCDIN3D	144233	bcgsc.ca	37	12	50232540	50232540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BCDIN3D	NM_181708	exon2	c.T493C	p.S165P	.	.	101	5	112	0	.	69
BEX1	55859	bcgsc.ca	37	X	102317964	102317964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BEX1	NM_018476	exon3	c.A239G	p.E80G	.	.	229	8	189	2	.	109
BLM	641	bcgsc.ca	37	15	91303390	91303390	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BLM	NM_000057	exon6	c.T1101C	p.S367S	.	.	208	7	224	0	.	664
BLM	641	bcgsc.ca	37	15	91306347	91306347	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BLM	NM_000057	exon8	c.T2034C	p.A678A	.	.	323	9	296	0	.	664
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83926506	83926506	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BNC1	NM_001717	exon5	c.T2673C	p.D891D	.	.	90	23	84	0	.	93
BRD7	29117	bcgsc.ca	37	16	50353868	50353868	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BRD7	NM_001173984	exon16	c.A1833G	p.G611G	.	.	99	5	62	0	.	90
BRPF1	7862	bcgsc.ca	37	3	9781142	9781142	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BRPF1	NM_001003694	exon3	c.T1059C	p.C353C	.	.	142	5	130	0	.	92
BTBD18	643376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57512606	57512606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001145101	exon3	c.C1139A	p.T380N	.	.	106	8	91	0	.	.
BZRAP1	9256	ucsc.edu	37	17	56384267	56384267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	BZRAP1	NM_004758	exon25	c.C5046A	p.Y1682X	.	.	63	5	72	2	.	229
C11orf74	119710	bcgsc.ca	37	11	36654973	36654973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C11orf74	NM_138787	exon3	c.T276G	p.H92Q	.	.	67	6	71	0	.	68
C14orf23	387978	bcgsc.ca	37	14	29261224	29261224	+	RNA	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C14orf23	.	.	.	.	.	.	170	6	250	1	.	23
C1orf173	127254	hgsc.bcm.edu	37	1	75037864	75037864	+	Missense_Mutation	SNP	C	C	T	rs201939582	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C1orf173	NM_001002912	exon14	c.G3530A	p.G1177E	.	.	387	25	352	0	C|0.992;T|0.008	94
C1QBP	708	bcgsc.ca	37	17	5341476	5341476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C1QBP	NM_001212	exon2	c.A350G	p.E117G	.	.	198	6	204	1	.	91
C21orf54	728409	bcgsc.ca	37	21	34540866	34540866	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	107	5	95	0	.	.
C3orf30	152405	bcgsc.ca	37	3	118866106	118866106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C3orf30	NM_152539	exon1	c.A1070G	p.K357R	.	.	86	6	74	0	.	92
C3orf70	285382	bcgsc.ca	37	3	184801181	184801181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C3orf70	NM_001025266	exon2	c.T367C	p.Y123H	.	.	97	5	74	0	.	68
C5orf28	64417	bcgsc.ca	37	5	43446495	43446495	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C5orf28	NM_022483	exon3	c.T477C	p.D159D	.	.	154	5	178	0	.	90
C5orf34	375444	bcgsc.ca	37	5	43506016	43506016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C5orf34	NM_198566	exon4	c.T766C	p.S256P	.	.	132	5	161	0	.	153
C6orf70	55780	bcgsc.ca	37	6	170175375	170175375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	C6orf70	NM_018341	exon14	c.T1327C	p.C443R	.	.	98	4	94	0	.	91
CAMTA1	23261	bcgsc.ca	37	1	7798514	7798514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CAMTA1	NM_015215	exon16	c.A4154G	p.E1385G	.	.	91	5	97	0	.	520
CAP2	10486	broad.mit.edu	37	6	17541209	17541209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CAP2	NM_006366	exon9	c.C832T	p.R278C	.	.	81	4	70	0	.	91
CAP2	10486	broad.mit.edu;bcgsc.ca	37	6	17514111	17514111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CAP2	NM_006366	exon7	c.T562C	p.Y188H	.	.	153	10	163	1	.	91
CAPN14	440854	hgsc.bcm.edu	37	2	31399956	31399957	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001145122	exon20	c.1908_1909insGC	p.G636fs	.	.	176	0	133	0	.	.
CARD14	79092	bcgsc.ca	37	17	78164597	78164597	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CARD14	NM_024110	exon7	c.C988T	p.L330L	.	.	71	4	55	0	.	231
CASC5	57082	bcgsc.ca	37	15	40913074	40913074	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CASC5	NM_170589	exon11	c.T690C	p.D230D	.	.	54	4	63	0	.	660
CC2D2A	57545	bcgsc.ca	37	4	15516338	15516338	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CC2D2A	NM_001080522	exon10	c.A726G	p.E242E	.	.	155	6	156	0	.	25
CCDC132	55610	bcgsc.ca	37	7	92905496	92905496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CCDC132	NM_024553	exon12	c.A821G	p.H274R	.	.	225	6	259	0	.	90
CCDC171	203238	bcgsc.ca	37	9	15784594	15784594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_173550	exon21	c.A3169G	p.N1057D	.	.	94	4	125	0	.	.
CCDC25	55246	bcgsc.ca	37	8	27610044	27610044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CCDC25	NM_018246	exon5	c.G229T	p.A77S	.	.	78	4	134	1	.	90
CCT6P3	643180	ucsc.edu	37	7	64528850	64528850	+	RNA	SNP	T	T	G	rs2949472	by1000genomes	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	38	5	30	0	T|0.981;G|0.019	.
CD200	4345	bcgsc.ca	37	3	112054808	112054808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CD200	NM_001004196	exon2	c.G31A	p.G11R	.	.	149	5	86	0	.	90
CD274	29126	bcgsc.ca	37	9	5457386	5457386	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CD274	NM_014143	exon3	c.T360C	p.G120G	.	.	137	5	121	1	.	227
CD97	976	bcgsc.ca	37	19	14499606	14499606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CD97	NM_078481	exon3	c.A166G	p.T56A	.	.	167	7	165	2	.	570
CDH7	1005	bcgsc.ca	37	18	63525149	63525149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CDH7	NM_004361	exon8	c.A1333G	p.N445D	.	.	77	4	90	0	.	94
CDK17	5128	bcgsc.ca	37	12	96676332	96676332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CDK17	NM_001170464	exon15	c.G1411A	p.V471M	.	.	230	6	205	0	.	550
CDK18	5129	bcgsc.ca	37	1	205492405	205492405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CDK18	NM_212503	exon2	c.T110C	p.L37P	.	.	125	6	117	1	.	521
CDR2L	30850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72998268	72998268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_014603	exon4	c.C451T	p.R151C	.	.	80	18	39	0	.	.
CELSR1	9620	bcgsc.ca	37	22	46932305	46932305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CELSR1	NM_014246	exon1	c.T763C	p.F255L	.	.	87	4	56	0	.	525
CENPF	1063	bcgsc.ca	37	1	214818518	214818518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CENPF	NM_016343	exon13	c.G5605A	p.D1869N	.	.	82	4	89	0	.	567
CENPH	64946	bcgsc.ca	37	5	68498784	68498784	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CENPH	NM_022909	exon7	c.A474G	p.R158R	.	.	232	7	302	0	.	153
CGGBP1	8545	bcgsc.ca	37	3	88105063	88105063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CGGBP1	NM_001195308	exon4	c.A64G	p.T22A	.	.	166	7	118	0	.	90
CHAF1B	8208	bcgsc.ca	37	21	37781752	37781752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHAF1B	NM_005441	exon10	c.T908C	p.V303A	.	.	153	5	180	0	.	92
CHD7	55636	bcgsc.ca	37	8	61707592	61707592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHD7	NM_017780	exon4	c.A2144G	p.N715S	.	.	146	5	109	0	.	141
CHD7	55636	bcgsc.ca	37	8	61775184	61775184	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHD7	NM_017780	exon37	c.A8049G	p.P2683P	.	.	229	7	148	0	.	141
CHRNA6	8973	bcgsc.ca	37	8	42614238	42614238	+	Missense_Mutation	SNP	T	T	C	rs199556613		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHRNA6	NM_004198	exon3	c.A238G	p.M80V	.	.	161	8	177	0	T|0.999;C|0.001	90
CHRNB3	1142	bcgsc.ca	37	8	42585782	42585782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHRNB3	NM_000749	exon4	c.G295A	p.G99R	.	.	112	5	128	0	.	91
CHRNB3	1142	ucsc.edu;bcgsc.ca	37	8	42587687	42587687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHRNB3	NM_000749	exon5	c.A1237G	p.S413G	.	.	59	5	82	0	.	91
CHRND	1144	bcgsc.ca	37	2	233396278	233396278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CHRND	NM_000751	exon9	c.T959C	p.V320A	.	.	223	7	232	0	.	155
CIT	11113	bcgsc.ca	37	12	120151429	120151429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CIT	NM_001206999	exon34	c.A4331G	p.K1444R	.	.	103	7	96	1	.	399
CKAP5	9793	bcgsc.ca	37	11	46789182	46789182	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CKAP5	NM_001008938	exon27	c.A3354G	p.T1118T	.	.	151	6	144	0	.	92
CLEC4M	10332	bcgsc.ca	37	19	7832480	7832480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CLEC4M	NM_014257	exon6	c.T1015C	p.W339R	.	.	103	5	86	0	.	91
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19223332	19223332	+	Missense_Mutation	SNP	C	C	G	rs191439705		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CLTCL1	NM_001835	exon6	c.G856C	p.D286H	.	.	131	32	164	0	C|0.999;G|0.001	230
CLUAP1	23059	bcgsc.ca	37	16	3558467	3558467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CLUAP1	NM_015041	exon4	c.A398G	p.K133R	.	.	72	4	78	0	.	137
CMYA5	202333	bcgsc.ca	37	5	79029779	79029779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CMYA5	NM_153610	exon2	c.T5191C	p.S1731P	.	.	90	4	118	0	.	77
CNGA1	1259	bcgsc.ca	37	4	47938723	47938723	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CNGA1	NM_001142564	exon10	c.A1995G	p.E665E	.	.	210	6	191	1	.	92
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40961398	40961398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CNTD1	NM_173478	exon7	c.C838A	p.Q280K	.	.	220	42	207	0	.	90
CNTN2	6900	bcgsc.ca	37	1	205027433	205027433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CNTN2	NM_005076	exon4	c.T340C	p.S114P	.	.	82	4	69	1	.	91
CNTNAP4	85445	bcgsc.ca	37	16	76486468	76486468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CNTNAP4	NM_138994	exon7	c.A916G	p.S306G	.	.	198	6	269	0	.	70
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165551580	165551580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COBLL1	NM_014900	exon12	c.A2436T	p.K812N	.	.	325	60	396	0	.	93
COG2	22796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230819335	230819335	+	Silent	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COG2	NM_007357	exon11	c.G1182C	p.A394A	.	.	155	12	160	0	.	90
COG3	83548	bcgsc.ca	37	13	46103985	46103985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COG3	NM_031431	exon21	c.A2290G	p.T764A	.	.	148	5	234	0	.	154
COL16A1	1307	bcgsc.ca	37	1	32158241	32158241	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COL16A1	NM_001856	exon15	c.T1116C	p.C372C	.	.	97	5	85	0	.	98
COL21A1	81578	broad.mit.edu;bcgsc.ca	37	6	56035645	56035645	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COL21A1	NM_030820	exon5	c.T828C	p.G276G	.	.	87	5	117	0	.	24
COL21A1	81578	bcgsc.ca	37	6	56033081	56033081	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COL21A1	NM_030820	exon6	c.A1041G	p.E347E	.	.	106	5	138	0	.	24
COL2A1	1280	bcgsc.ca	37	12	48367334	48367334	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	COL2A1	NM_001844	exon54	c.A4320G	p.K1440K	.	.	112	5	94	0	.	92
COLGALT1	79709	bcgsc.ca	37	19	17679427	17679427	+	Missense_Mutation	SNP	C	C	A	rs201119112	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_024656	exon5	c.C734A	p.A245E	.	.	81	4	69	0	C|0.999;T|0.001	.
CORO7-PAM16	100529144	bcgsc.ca	37	16	4391406	4391406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001201479	exon29	c.T2957C	p.L986P	.	.	169	5	124	0	.	.
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9357	9357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	ENST00000362079	exon1	c.A151G	p.T51A	.	.	266	9	193	2	.	.
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148923993	148923993	+	Missense_Mutation	SNP	T	T	C	rs201036476		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CP	NM_000096	exon6	c.A1170G	p.I390M	.	.	253	62	267	0	T|0.999;C|0.001	515
CPB1	1360	bcgsc.ca	37	3	148545669	148545669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CPB1	NM_001871	exon1	c.A59G	p.E20G	.	.	365	9	333	4	.	92
CPXCR1	53336	bcgsc.ca	37	X	88008701	88008701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CPXCR1	NM_001184771	exon3	c.A286G	p.I96V	.	.	89	5	108	0	.	133
CRHR1	1394	bcgsc.ca	37	17	43908262	43908262	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CRHR1	NM_001145146	exon9	c.C813A	p.I271I	.	.	136	5	131	0	.	522
CRTAC1	55118	bcgsc.ca	37	10	99644089	99644089	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CRTAC1	NM_001206528	exon12	c.T1506C	p.S502S	.	.	71	4	74	0	.	95
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3081364	3081364	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSMD1	NM_033225	exon28	c.C4371A	p.G1457G	.	.	169	18	188	0	.	86
CSMD2	114784	bcgsc.ca	37	1	34204866	34204866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSMD2	NM_052896	exon15	c.A2123G	p.Q708R	.	.	75	4	109	0	.	103
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38696748	38696748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSNK1E	NM_001894	exon5	c.C546G	p.I182M	.	.	289	77	353	0	.	1193
CSRNP3	80034	bcgsc.ca	37	2	166533052	166533052	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSRNP3	NM_001172173	exon6	c.C639T	p.G213G	.	.	73	4	80	0	.	157
CSRP2BP	57325	bcgsc.ca	37	20	18142819	18142819	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSRP2BP	NM_020536	exon5	c.A1038G	p.T346T	.	.	68	4	58	0	.	525
CSTF2	1478	bcgsc.ca	37	X	100078923	100078923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CSTF2	NM_001325	exon5	c.A493G	p.N165D	.	.	141	5	172	0	.	131
CTCFL	140690	bcgsc.ca	37	20	56093826	56093826	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CTCFL	NM_001269044	exon4	c.T1047C	p.Y349Y	.	.	210	6	211	0	.	292
CTDNEP1	23399	bcgsc.ca	37	17	7154554	7154554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CTDNEP1	NM_001143775	exon1	c.G62T	p.W21L	.	.	81	4	83	0	.	91
CTDP1	9150	bcgsc.ca	37	18	77477640	77477640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CTDP1	NM_004715	exon9	c.T2174C	p.L725P	.	.	112	6	124	0	.	90
CTNNAL1	8727	bcgsc.ca	37	9	111745478	111745478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CTNNAL1	NM_003798	exon6	c.G847A	p.G283R	.	.	297	7	341	0	.	228
CTNND1	1500	bcgsc.ca	37	11	57571110	57571110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CTNND1	NM_001085461	exon8	c.T1438C	p.S480P	.	.	130	5	115	0	.	272
CTRC	11330	bcgsc.ca	37	1	15769038	15769038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CTRC	NM_007272	exon4	c.T326C	p.V109A	.	.	69	5	68	0	.	90
CUL3	8452	bcgsc.ca	37	2	225346672	225346672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CUL3	NM_001257198	exon14	c.G1984A	p.G662S	.	.	254	7	287	0	.	229
CYP11B2	1585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143993483	143993483	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	CYP11B2	NM_000498	exon9	c.A1425G	p.T475T	.	.	262	95	215	1	.	90
DAAM2	23500	bcgsc.ca	37	6	39855282	39855282	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DAAM2	NM_015345	exon16	c.A1974G	p.E658E	.	.	62	4	80	0	.	228
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	72204825	72204825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DACH1	NM_080759	exon3	c.C995A	p.A332D	.	.	118	39	100	0	.	135
DCHS2	54798	bcgsc.ca	37	4	155298429	155298429	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DCHS2	NM_001142552	exon2	c.T2220C	p.D740D	.	.	91	4	86	0	.	94
DCHS2	54798	broad.mit.edu;bcgsc.ca	37	4	155241935	155241935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DCHS2	NM_017639	exon14	c.G3251A	p.G1084D	.	.	202	7	257	0	.	94
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155226013	155226013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DCHS2	NM_017639	exon17	c.G4048T	p.G1350X	.	.	314	47	409	0	.	94
DDC	1644	bcgsc.ca	37	7	50535003	50535003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDC	NM_001082971	exon13	c.T1151C	p.L384P	.	.	81	4	54	0	.	92
DDX23	9416	bcgsc.ca	37	12	49239526	49239526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX23	NM_004818	exon2	c.T40C	p.S14P	.	.	107	5	134	0	.	539
DDX31	64794	bcgsc.ca	37	9	135537706	135537706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX31	NM_022779	exon3	c.T665C	p.V222A	.	.	69	4	66	0	.	226
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	135537950	135537950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX31	NM_022779	exon2	c.G523A	p.A175T	.	.	271	22	319	0	.	226
DDX4	54514	bcgsc.ca	37	5	55081668	55081668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX4	NM_024415	exon13	c.T833C	p.V278A	.	.	197	6	227	0	.	227
DDX60	55601	bcgsc.ca	37	4	169206609	169206609	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DDX60	NM_017631	exon11	c.A1380G	p.P460P	.	.	85	4	67	0	.	25
DENND5B	160518	bcgsc.ca	37	12	31613231	31613231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DENND5B	NM_144973	exon4	c.T989C	p.L330P	.	.	118	5	114	0	.	24
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31605091	31605092	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DENND5B	NM_144973	exon5	c.1412_1413insA	p.M471fs	.	.	269	42	227	0	.	24
DERL2	51009	bcgsc.ca	37	17	5383418	5383418	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DERL2	NM_016041	exon6	c.C570T	p.P190P	.	.	83	4	112	0	.	90
DGKI	9162	bcgsc.ca	37	7	137266602	137266602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DGKI	NM_004717	exon15	c.T1636C	p.S546P	.	.	90	4	72	0	.	228
DHFR	1719	bcgsc.ca	37	5	79924927	79924927	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DHFR	NM_000791	exon6	c.A543G	p.E181E	.	.	238	6	248	0	.	227
DHX37	57647	bcgsc.ca	37	12	125457081	125457081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DHX37	NM_032656	exon7	c.A1045G	p.T349A	.	.	211	6	219	0	.	227
DICER1	23405	broad.mit.edu;bcgsc.ca	37	14	95557624	95557624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DICER1	NM_030621	exon26	c.C5443T	p.L1815F	.	.	312	11	408	1	.	961
DLC1	10395	bcgsc.ca	37	8	13162790	13162790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DLC1	NM_182643	exon5	c.A1336G	p.K446E	.	.	238	7	282	0	.	657
DLL1	28514	bcgsc.ca	37	6	170592740	170592740	+	Missense_Mutation	SNP	A	A	G	rs191694591	by1000genomes	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DLL1	NM_005618	exon9	c.T1627C	p.F543L	.	.	65	4	69	0	A|0.999;G|0.001	659
DNAH6	1768	broad.mit.edu	37	2	84934073	84934073	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAH6	NM_001370	exon53	c.A8781G	p.R2927R	.	.	448	9	552	1	.	69
DNAH8	1769	bcgsc.ca	37	6	38747764	38747764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAH8	NM_001206927	exon15	c.T2062C	p.C688R	.	.	161	5	161	0	.	615
DNAH8	1769	bcgsc.ca	37	6	38813405	38813405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAH8	NM_001206927	exon36	c.T4901C	p.V1634A	.	.	135	5	121	0	.	615
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38781906	38781906	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAH8	NM_001206927	exon25	c.3333+1G>T	.	.	.	146	21	147	0	.	615
DNAI1	27019	broad.mit.edu;bcgsc.ca	37	9	34506717	34506717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DNAI1	NM_012144	exon13	c.G1156A	p.V386I	.	.	188	8	160	1	.	90
DNM1P46	196968	bcgsc.ca	37	15	100331765	100331765	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	56	4	64	1	.	.
DNTTIP2	30836	bcgsc.ca	37	1	94342929	94342929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_014597	exon2	c.A562G	p.T188A	.	.	224	8	258	1	.	.
DOCK2	1794	bcgsc.ca	37	5	169122816	169122816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DOCK2	NM_004946	exon10	c.A853G	p.N285D	.	.	164	5	175	0	.	97
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	169483728	169483728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	DOCK2,NS,carcinoma,-1	DOCK2	NM_004946	exon43	c.C4336T	p.R1446W	.	.	215	16	175	1	.	97
DPF3	8110	ucsc.edu	37	14	73238584	73238584	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DPF3	NM_012074	exon2	c.A50T	p.Y17F	.	.	45	4	36	1	.	1
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154263941	154263941	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DPP6	NM_130797	exon5	c.C567T	p.A189A	.	.	127	15	185	0	.	652
DUS3L	56931	bcgsc.ca	37	19	5786486	5786486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DUS3L	NM_020175	exon10	c.G1554T	p.M518I	.	.	83	4	89	0	.	90
DYM	54808	bcgsc.ca	37	18	46808483	46808483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DYM	NM_017653	exon10	c.A1009G	p.T337A	.	.	196	6	195	0	.	226
DYNC1I2	1781	bcgsc.ca	37	2	172586258	172586258	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DYNC1I2	NM_001378	exon15	c.A1431G	p.G477G	.	.	214	7	217	0	.	91
DYNC1LI1	51143	bcgsc.ca	37	3	32582671	32582671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	DYNC1LI1	NM_016141	exon5	c.A596G	p.E199G	.	.	226	6	226	1	.	91
EAPP	55837	bcgsc.ca	37	14	34998591	34998591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EAPP	NM_018453	exon4	c.A443G	p.Q148R	.	.	296	7	330	0	.	91
EDEM2	55741	bcgsc.ca	37	20	33722615	33722615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EDEM2	NM_018217	exon6	c.G628A	p.G210S	.	.	138	5	123	0	.	90
EED	8726	bcgsc.ca	37	11	85988182	85988182	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EED	NM_152991	exon10	c.1125+2T>C	.	.	.	188	6	251	2	.	227
EGFL6	25975	bcgsc.ca	37	X	13618122	13618122	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EGFL6	NM_001167890	exon4	c.G309A	p.R103R	.	.	81	4	82	0	.	193
EIF2B4	8890	bcgsc.ca	37	2	27587643	27587643	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EIF2B4	NM_172195	exon11	c.T1374C	p.C458C	.	.	143	5	133	0	.	90
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184045645	184045645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EIF4G1	NM_001194946	exon27	c.G3829A	p.A1277T	.	.	109	33	106	0	.	344
ELSPBP1	64100	broad.mit.edu;bcgsc.ca	37	19	48525513	48525513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ELSPBP1	NM_022142	exon6	c.T601C	p.S201P	.	.	285	7	353	3	.	90
EML1	2009	bcgsc.ca	37	14	100405547	100405547	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EML1	NM_001008707	exon22	c.A2262G	p.E754E	.	.	128	6	138	0	.	138
EMR3	84658	bcgsc.ca	37	19	14779633	14779633	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EMR3	NM_032571	exon2	c.T57C	p.A19A	.	.	131	6	136	0	.	528
ENPP6	133121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185038169	185038169	+	Missense_Mutation	SNP	C	C	T	rs139781867	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ENPP6	NM_153343	exon5	c.G695A	p.R232H	.	.	168	31	130	0	C|0.999;T|0.001	90
EP300	2033	bcgsc.ca	37	22	41489065	41489065	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EP300	NM_001429	exon1	c.A57G	p.S19S	.	.	122	5	137	0	.	2011
EPB41	2035	bcgsc.ca	37	1	29391664	29391664	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPB41	NM_001166005	exon16	c.A2178G	p.G726G	.	.	157	6	205	0	.	91
EPB41L4B	54566	bcgsc.ca	37	9	112027260	112027260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPB41L4B	NM_019114	exon5	c.A578G	p.K193R	.	.	77	4	120	1	.	92
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32582635	32582635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPC1	NM_001272004	exon3	c.A344G	p.Y115C	.	.	260	37	210	0	.	93
EPC2	26122	bcgsc.ca	37	2	149511667	149511667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPC2	NM_015630	exon4	c.T631C	p.F211L	.	.	168	5	180	0	.	137
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66361224	66361224	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA5	NM_004439	exon4	c.C948T	p.I316I	.	.	209	37	216	0	.	1430
EPHA7	2045	bcgsc.ca	37	6	94124446	94124446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA7	NM_004440	exon2	c.A137G	p.E46G	.	.	74	4	94	0	.	1453
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	94124469	94124469	+	Silent	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPHA7	NM_004440	exon2	c.T114A	p.S38S	.	.	71	10	97	0	.	1453
EPX	8288	bcgsc.ca	37	17	56281775	56281775	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EPX	NM_000502	exon12	c.A2139G	p.R713R	.	.	72	4	40	0	.	92
ERBB2	2064	bcgsc.ca	37	17	37872164	37872164	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ERBB2	NM_004448	exon12	c.C1485T	p.H495H	.	.	80	4	86	0	.	9959
ERCC6L2	375748	bcgsc.ca	37	9	98691089	98691089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001010895	exon11	c.A1727G	p.K576R	.	.	124	6	129	1	.	.
ERCC6L	54821	bcgsc.ca	37	X	71424955	71424955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ERCC6L	NM_017669	exon2	c.A3662G	p.N1221S	.	.	202	8	178	0	.	93
ERP44	23071	bcgsc.ca	37	9	102814740	102814740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ERP44	NM_015051	exon4	c.A245G	p.E82G	.	.	94	4	100	0	.	90
ETAA1	54465	bcgsc.ca	37	2	67630042	67630042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ETAA1	NM_019002	exon4	c.A478G	p.T160A	.	.	86	4	118	0	.	156
EXOC3	11336	bcgsc.ca	37	5	453928	453928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EXOC3	NM_007277	exon4	c.T808C	p.S270P	.	.	65	4	48	0	.	90
EXPH5	23086	bcgsc.ca	37	11	108381284	108381284	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	EXPH5	NM_015065	exon6	c.T4950C	p.S1650S	.	.	280	7	274	1	.	95
F8	2157	bcgsc.ca	37	X	154227875	154227875	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	F8	NM_000132	exon2	c.A144G	p.R48R	.	.	83	4	85	0	.	182
FAM111A	63901	bcgsc.ca	37	11	58920943	58920943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM111A	NM_001142520	exon5	c.A1802G	p.Q601R	.	.	221	6	228	0	.	93
FAM111B	374393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58893210	58893210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM111B	NM_198947	exon4	c.T1640G	p.I547S	.	.	69	14	90	0	.	92
FAM117A	81558	bcgsc.ca	37	17	47788887	47788887	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM117A	NM_030802	exon8	c.T1092C	p.T364T	.	.	54	4	74	0	.	69
FAM131C	348487	ucsc.edu	37	1	16385007	16385007	+	Silent	SNP	C	C	T	rs28667975		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM131C	NM_182623	exon7	c.G768A	p.G256G	.	.	86	20	22	3	C|1.000;|0.000	514
FAM149B1	317662	bcgsc.ca	37	10	74995023	74995023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_173348	exon12	c.A1549G	p.R517G	.	.	159	5	186	0	.	.
FAM161B	145483	bcgsc.ca	37	14	74407683	74407683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM161B	NM_152445	exon5	c.A1535G	p.N512S	.	.	83	4	104	1	.	91
FAM175B	23172	bcgsc.ca	37	10	126523119	126523119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM175B	NM_032182	exon9	c.A827G	p.D276G	.	.	177	6	198	3	.	186
FAM186A	121006	bcgsc.ca	37	12	50747227	50747227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM186A	NM_001145475	exon4	c.G3388T	p.A1130S	.	.	147	5	119	0	.	68
FAM186A	121006	bcgsc.ca	37	12	50747245	50747245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM186A	NM_001145475	exon4	c.A3370G	p.T1124A	.	.	150	5	111	0	.	68
FAM217A	222826	bcgsc.ca	37	6	4069421	4069421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_173563	exon7	c.G1036A	p.V346I	.	.	216	6	241	0	.	.
FAM24B	196792	bcgsc.ca	37	10	124610048	124610048	+	RNA	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM24B	.	.	.	.	.	.	126	6	160	1	.	90
FAM57A	79850	bcgsc.ca	37	17	643763	643763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM57A	NM_024792	exon4	c.G427A	p.G143R	.	.	88	4	110	0	.	90
FAM65B	9750	bcgsc.ca	37	6	24828371	24828371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM65B	NM_014722	exon19	c.A2722G	p.R908G	.	.	65	4	60	0	.	91
FAM65B	9750	bcgsc.ca	37	6	24847770	24847770	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM65B	NM_014722	exon13	c.T1227C	p.Y409Y	.	.	92	4	73	0	.	91
FAM78B	149297	bcgsc.ca	37	1	166135295	166135295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM78B	NM_001017961	exon1	c.A191G	p.E64G	.	.	242	6	183	0	.	91
FAM83B	222584	bcgsc.ca	37	6	54805136	54805136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM83B	NM_001010872	exon5	c.T1367C	p.L456P	.	.	90	6	64	0	.	96
FAM83H	286077	bcgsc.ca	37	8	144812436	144812436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAM83H	NM_198488	exon2	c.A317G	p.E106G	.	.	92	5	43	1	.	92
FANCC	2176	bcgsc.ca	37	9	98011546	98011546	+	Missense_Mutation	SNP	A	A	G	rs147479204	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FANCC	NM_001243743	exon2	c.T28C	p.C10R	.	.	111	5	98	0	A|1.000;C|0.000	970
FARP2	9855	bcgsc.ca	37	2	242343272	242343272	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FARP2	NM_014808	exon3	c.A213G	p.T71T	.	.	188	6	214	0	.	93
FAT2	2196	bcgsc.ca	37	5	150924573	150924573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAT2	NM_001447	exon9	c.G6115A	p.A2039T	.	.	139	5	100	0	.	96
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92085831	92085831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FAT3	NM_001008781	exon1	c.G553T	p.A185S	.	.	86	14	108	0	.	73
FBN2	2201	bcgsc.ca	37	5	127610325	127610325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FBN2	NM_001999	exon60	c.A7645G	p.N2549D	.	.	156	6	168	0	.	146
FDXR	2232	bcgsc.ca	37	17	72859278	72859278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FDXR	NM_001258012	exon11	c.T1394C	p.L465P	.	.	155	13	150	6	.	226
FGF11	2256	broad.mit.edu;mdanderson.org	37	17	7343007	7343007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FGF11	NM_004112	exon1	c.C68T	p.P23L	.	.	34	5	12	0	.	522
FKBP5	2289	bcgsc.ca	37	6	35604806	35604806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FKBP5	NM_001145775	exon4	c.T235C	p.F79L	.	.	146	5	193	0	.	227
FKBP8	23770	bcgsc.ca	37	19	18650443	18650443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FKBP8	NM_012181	exon3	c.T380C	p.L127P	.	.	61	4	49	1	.	227
FLRT3	23767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	14307370	14307370	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FLRT3	NM_013281	exon2	c.G783A	p.R261R	.	.	131	30	154	1	.	91
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28883065	28883065	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FLT1	NM_002019	exon29	c.3636-1G>C	.	.	.	67	8	71	0	.	1406
FMNL2	114793	bcgsc.ca	37	2	153417544	153417544	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FMNL2	NM_052905	exon6	c.A591G	p.A197A	.	.	106	5	87	0	.	516
FMO4	2329	bcgsc.ca	37	1	171303660	171303660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FMO4	NM_002022	exon8	c.A938G	p.E313G	.	.	291	7	266	0	.	537
FNBP4	23360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47744730	47744730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FNBP4	NM_015308	exon15	c.C2603A	p.A868E	.	.	237	35	238	1	.	91
FNDC1	84624	broad.mit.edu;bcgsc.ca	37	6	159655417	159655417	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FNDC1	NM_032532	exon11	c.C3873T	p.S1291S	.	.	246	11	180	0	.	138
FOXJ2	55810	bcgsc.ca	37	12	8200682	8200682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FOXJ2	NM_018416	exon7	c.C1022T	p.T341I	.	.	123	5	124	0	.	230
FOXP2	93986	bcgsc.ca	37	7	114271741	114271741	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FOXP2	NM_001172767	exon6	c.T831C	p.P277P	.	.	177	6	190	1	.	295
FRA10AC1	118924	bcgsc.ca	37	10	95459851	95459851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRA10AC1	NM_145246	exon2	c.G13A	p.G5R	.	.	159	6	141	0	.	90
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79455713	79455713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRAS1	NM_025074	exon71	c.C11036T	p.P3679L	.	.	133	20	133	0	.	68
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	79328918	79328918	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRAS1	NM_001166133	exon31	c.C4231T	p.Q1411X	.	.	207	27	162	0	.	68
FREM2	341640	bcgsc.ca	37	13	39263824	39263824	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FREM2	NM_207361	exon1	c.T2343C	p.H781H	.	.	73	4	77	0	.	100
FRYL	285527	bcgsc.ca	37	4	48582923	48582923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FRYL	NM_015030	exon22	c.T2218C	p.S740P	.	.	178	6	157	0	.	69
FSTL4	23105	bcgsc.ca	37	5	132534895	132534895	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FSTL4	NM_015082	exon16	c.A2421G	p.T807T	.	.	122	5	98	0	.	91
FTL	2512	bcgsc.ca	37	19	49469121	49469121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FTL	NM_000146	exon2	c.T197C	p.L66P	.	.	73	4	65	0	.	90
FUZ	80199	bcgsc.ca	37	19	50316363	50316363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FUZ	NM_001171937	exon1	c.A1G	p.M1V	.	.	90	5	96	0	.	90
FXYD7	53822	bcgsc.ca	37	19	35639601	35639601	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	FXYD7	NM_022006	exon2	c.T36C	p.P12P	.	.	99	5	83	0	.	514
G3BP2	9908	bcgsc.ca	37	4	76573833	76573833	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	G3BP2	NM_012297	exon9	c.A918G	p.G306G	.	.	59	4	56	0	.	153
GAB2	9846	hgsc.bcm.edu	37	11	77932827	77932828	+	Splice_Site	INS	-	-	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GAB2	NM_080491	exon9	c.1659-2->C	.	.	.	336	22	353	0	.	663
GABRA3	2556	bcgsc.ca	37	X	151366245	151366245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GABRA3	NM_000808	exon8	c.T791C	p.V264A	.	.	73	4	101	1	.	131
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	151821044	151821044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GABRQ	NM_018558	exon9	c.C1199A	p.P400H	.	.	169	66	159	0	.	133
GALNT11	63917	bcgsc.ca	37	7	151800354	151800354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GALNT11	NM_022087	exon4	c.A577G	p.S193G	.	.	157	5	165	0	.	90
GAS2L3	283431	bcgsc.ca	37	12	101018197	101018197	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GAS2L3	NM_174942	exon10	c.A1614G	p.Q538Q	.	.	72	6	67	0	.	227
GCC2	9648	bcgsc.ca	37	2	109088479	109088479	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GCC2	NM_181453	exon6	c.A2694G	p.K898K	.	.	186	6	258	1	.	91
GIT2	9815	bcgsc.ca	37	12	110418819	110418819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GIT2	NM_057170	exon7	c.T656C	p.L219P	.	.	205	6	195	0	.	226
GK2	2712	bcgsc.ca	37	4	80328650	80328650	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GK2	NM_033214	exon1	c.T705C	p.S235S	.	.	148	5	160	1	.	94
GLG1	2734	bcgsc.ca	37	16	74566050	74566050	+	Missense_Mutation	SNP	G	G	A	rs201232267		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GLG1	NM_001145667	exon2	c.C440T	p.P147L	.	.	284	11	291	3	.	136
GLTSCR2	29997	bcgsc.ca	37	19	48259062	48259062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GLTSCR2	NM_015710	exon10	c.T1279C	p.S427P	.	.	122	7	132	1	.	514
GLYAT	10249	bcgsc.ca	37	11	58482875	58482875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GLYAT	NM_005838	exon3	c.A103G	p.I35V	.	.	74	5	64	0	.	90
GLYCTK	132158	bcgsc.ca	37	3	52325053	52325053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GLYCTK	NM_001144951	exon3	c.T455C	p.L152P	.	.	78	5	81	1	.	90
GMCL1	64395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70066643	70066643	+	Missense_Mutation	SNP	A	A	G	rs147534979	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GMCL1	NM_178439	exon3	c.A439G	p.I147V	.	.	484	97	592	1	A|0.999;G|0.001	93
GMNN	51053	bcgsc.ca	37	6	24785864	24785864	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GMNN	NM_001251990	exon7	c.469-2A>G	.	.	.	78	4	106	0	.	228
GNE	10020	bcgsc.ca	37	9	36223499	36223499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GNE	NM_001128227	exon8	c.G1375A	p.G459S	.	.	112	5	107	0	.	115
GOLGA3	2802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133358985	133358985	+	Missense_Mutation	SNP	A	A	C	rs79085716		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GOLGA3	NM_005895	exon17	c.T3362G	p.L1121R	.	.	394	65	393	1	A|0.999;C|0.001	95
GPATCH8	23131	bcgsc.ca	37	17	42513847	42513847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GPATCH8	NM_001002909	exon4	c.A260G	p.E87G	.	.	134	5	98	0	.	94
GPR126	57211	bcgsc.ca	37	6	142732473	142732473	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GPR126	NM_198569	exon18	c.T2466C	p.C822C	.	.	154	6	249	1	.	91
GPR153	387509	bcgsc.ca	37	1	6313797	6313797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GPR153	NM_207370	exon3	c.T767C	p.L256P	.	.	162	5	150	1	.	514
GPR87	53836	bcgsc.ca	37	3	151012001	151012001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GPR87	NM_023915	exon3	c.A1033G	p.R345G	.	.	183	6	191	0	.	153
GPRASP2	114928	bcgsc.ca	37	X	101969814	101969814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GPRASP2	NM_138437	exon4	c.T17C	p.I6T	.	.	67	4	53	0	.	131
GPT2	84706	bcgsc.ca	37	16	46960867	46960867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GPT2	NM_133443	exon11	c.T1399C	p.C467R	.	.	226	6	212	1	.	92
GRAMD1C	54762	bcgsc.ca	37	3	113658763	113658763	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRAMD1C	NM_017577	exon16	c.A1722G	p.T574T	.	.	457	9	430	2	.	93
GRAMD2	196996	bcgsc.ca	37	15	72456068	72456068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRAMD2	NM_001012642	exon9	c.A631G	p.K211E	.	.	69	4	74	2	.	90
GREB1L	80000	bcgsc.ca	37	18	19088147	19088147	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001142966	exon26	c.T4437C	p.Y1479Y	.	.	167	6	163	0	.	.
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105842667	105842667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRIA4	NM_000829	exon15	c.A2321C	p.K774T	.	.	201	40	164	1	.	230
GRID1	2894	bcgsc.ca	37	10	87407112	87407112	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRID1	NM_017551	exon13	c.C2040T	p.G680G	.	.	88	5	83	1	.	142
GRIN2D	2906	bcgsc.ca	37	19	48917273	48917273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GRIN2D	NM_000836	exon4	c.A1111G	p.N371D	.	.	78	4	99	0	.	156
GUCY2F	2986	bcgsc.ca	37	X	108641802	108641802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	GUCY2F	NM_001522	exon11	c.T2251C	p.C751R	.	.	67	5	67	0	.	540
HAVCR1	26762	bcgsc.ca	37	5	156464297	156464297	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HAVCR1	NM_001099414	exon7	c.T913C	p.L305L	.	.	149	6	161	0	.	92
HBP1	26959	bcgsc.ca	37	7	106840703	106840703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HBP1	NM_001244262	exon10	c.A1514G	p.K505R	.	.	147	5	180	1	.	91
HCN2	610	bcgsc.ca	37	19	615895	615895	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HCN2	NM_001194	exon8	c.C2091T	p.Y697Y	.	.	53	4	58	0	.	90
HEATR4	399671	bcgsc.ca	37	14	73974877	73974877	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HEATR4	NM_203309	exon8	c.A1842G	p.E614E	.	.	237	7	194	0	.	91
HEATR5A	25938	bcgsc.ca	37	14	31849679	31849679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HEATR5A	NM_015473	exon11	c.A1702G	p.T568A	.	.	65	4	61	0	.	23
HELZ	9931	bcgsc.ca	37	17	65156467	65156467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HELZ	NM_014877	exon17	c.G2087A	p.C696Y	.	.	75	4	70	0	.	92
HERC2	8924	bcgsc.ca	37	15	28408411	28408411	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HERC2	NM_004667	exon69	c.A10575G	p.K3525K	.	.	76	4	102	0	.	234
HHLA1	10086	bcgsc.ca	37	8	133117489	133117489	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001145095	exon1	c.T24C	p.G8G	.	.	158	5	107	1	.	.
HID1	283987	bcgsc.ca	37	17	72954791	72954791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_030630	exon10	c.T1217C	p.L406P	.	.	166	6	128	2	.	.
HIPK3	10114	bcgsc.ca	37	11	33360346	33360346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HIPK3	NM_001048200	exon5	c.A1385G	p.E462G	.	.	134	5	138	0	.	336
HIRA	7290	bcgsc.ca	37	22	19363192	19363192	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HIRA	NM_003325	exon15	c.T1737C	p.A579A	.	.	151	5	147	2	.	91
HK2	3099	bcgsc.ca	37	2	75115154	75115154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HK2	NM_000189	exon16	c.T2344C	p.F782L	.	.	157	5	162	0	.	252
HMCN1	83872	bcgsc.ca	37	1	186135434	186135434	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HMCN1	NM_031935	exon99	c.A15438G	p.Q5146Q	.	.	65	4	67	0	.	113
HMCN1	83872	bcgsc.ca	37	1	186140557	186140557	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HMCN1	NM_031935	exon101	c.T15663C	p.Y5221Y	.	.	129	5	129	0	.	113
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185970862	185970862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HMCN1	NM_031935	exon28	c.T4337A	p.I1446N	.	.	189	46	234	0	.	113
HNF4G	3174	bcgsc.ca	37	8	76465284	76465284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HNF4G	NM_004133	exon5	c.T467C	p.V156A	.	.	170	6	146	0	.	187
HOOK1	51361	bcgsc.ca	37	1	60336738	60336738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HOOK1	NM_015888	exon21	c.C1972A	p.R658S	.	.	147	5	165	1	.	154
HOXD3	3232	bcgsc.ca	37	2	177034103	177034103	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HOXD3	NM_006898	exon2	c.T261C	p.N87N	.	.	90	5	76	0	.	90
HPX	3263	bcgsc.ca	37	11	6459636	6459636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HPX	NM_000613	exon5	c.T440C	p.V147A	.	.	259	7	218	0	.	90
HS6ST3	266722	bcgsc.ca	37	13	97484883	97484883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HS6ST3	NM_153456	exon2	c.A847G	p.T283A	.	.	166	7	163	0	.	92
HSD17B13	345275	bcgsc.ca	37	4	88239583	88239583	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HSD17B13	NM_178135	exon2	c.T216C	p.G72G	.	.	143	5	149	1	.	90
HSD3BP4	128102	bcgsc.ca	37	1	120114506	120114506	+	RNA	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	80	5	70	0	.	.
HSP90AB1	3326	bcgsc.ca	37	6	44217284	44217284	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HSP90AB1	NM_007355	exon3	c.C318T	p.A106A	.	.	261	7	282	0	.	658
HSPE1	3336	bcgsc.ca	37	2	198367953	198367953	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HSPE1	NM_002157	exon4	c.T279C	p.D93D	.	.	73	4	109	0	.	226
HTR1D	3352	bcgsc.ca	37	1	23520340	23520340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HTR1D	NM_000864	exon1	c.T373C	p.S125P	.	.	247	7	262	1	.	90
HTR2A	3356	bcgsc.ca	37	13	47469985	47469985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HTR2A	NM_000621	exon2	c.G57A	p.M19I	.	.	77	4	80	0	.	519
HTR7	3363	bcgsc.ca	37	10	92502285	92502285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HTR7	NM_019859	exon4	c.A1394G	p.D465G	.	.	98	4	129	0	.	91
HTT	3064	bcgsc.ca	37	4	3234951	3234951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HTT	NM_002111	exon61	c.T8327C	p.L2776P	.	.	124	6	129	0	.	281
HUWE1	10075	bcgsc.ca	37	X	53618082	53618082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HUWE1	NM_031407	exon34	c.C3973A	p.L1325I	.	.	64	4	68	0	.	280
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70884548	70884548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	HYDIN	NM_001270974	exon74	c.G12454A	p.D4152N	.	.	134	20	162	0	.	92
ICK	22858	bcgsc.ca	37	6	52871157	52871157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ICK	NM_016513	exon14	c.C1700A	p.A567D	.	.	93	4	93	0	.	421
ICMT	23463	bcgsc.ca	37	1	6293691	6293691	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ICMT	NM_012405	exon3	c.C297T	p.S99S	.	.	118	6	120	0	.	650
IDE	3416	bcgsc.ca	37	10	94291644	94291644	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IDE	NM_004969	exon4	c.C522T	p.F174F	.	.	79	4	89	0	.	92
IFNA4	3441	broad.mit.edu	37	9	21187037	21187037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IFNA4	NM_021068	exon1	c.A494G	p.E165G	.	.	753	10	963	2	.	92
IFRD1	3475	bcgsc.ca	37	7	112096990	112096990	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IFRD1	NM_001007245	exon5	c.T306C	p.A102A	.	.	162	5	170	0	.	91
IFT140	9742	bcgsc.ca	37	16	1616197	1616197	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IFT140	NM_014714	exon16	c.A1866G	p.R622R	.	.	201	6	190	0	.	95
IFT43	112752	bcgsc.ca	37	14	76549035	76549035	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IFT43	NM_052873	exon6	c.G459A	p.L153L	.	.	74	4	85	0	.	90
IKBIP	121457	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99019886	99019886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IKBIP	NM_153687	exon3	c.T956C	p.M319T	.	.	421	70	571	1	.	226
IL1RAP	3556	bcgsc.ca	37	3	190363497	190363497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IL1RAP	NM_001167929	exon10	c.A1211G	p.E404G	.	.	189	6	176	0	.	91
IL1RAPL1	11141	bcgsc.ca	37	X	29301278	29301278	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IL1RAPL1	NM_014271	exon3	c.C306T	p.S102S	.	.	85	4	85	0	.	134
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	155239667	155239667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IL9R	NM_002186	exon9	c.C1159A	p.L387M	.	.	330	38	247	0	.	40
ILVBL	10994	bcgsc.ca	37	19	15233542	15233542	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ILVBL	NM_006844	exon6	c.C678A	p.A226A	.	.	80	7	83	3	.	92
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1517435	1517435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001080453	exon34	c.G4768A	p.E1590K	.	.	165	21	93	0	.	.
INTS2	57508	bcgsc.ca	37	17	60002344	60002344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	INTS2	NM_020748	exon3	c.A434G	p.E145G	.	.	130	5	144	0	.	206
IQCA1	79781	bcgsc.ca	37	2	237402495	237402495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	IQCA1	NM_001270585	exon3	c.G393T	p.L131F	.	.	229	6	243	0	.	23
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20445703	20445703	+	Silent	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITGB8	NM_002214	exon12	c.T1932A	p.L644L	.	.	141	25	145	0	.	227
ITSN1	6453	bcgsc.ca	37	21	35154323	35154323	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITSN1	NM_001001132	exon16	c.A1710G	p.R570R	.	.	139	5	155	0	.	94
ITSN1	6453	broad.mit.edu;bcgsc.ca	37	21	35208755	35208755	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ITSN1	NM_001001132	exon29	c.G3480A	p.V1160V	.	.	51	4	79	0	.	94
JAK1	3716	bcgsc.ca	37	1	65303713	65303713	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	JAK1	NM_002227	exon22	c.A3042G	p.E1014E	.	.	306	8	307	2	.	3900
JARID2	3720	bcgsc.ca	37	6	15504739	15504739	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	JARID2	NM_004973	exon9	c.T2457C	p.S819S	.	.	88	4	96	0	.	228
JKAMP	51528	bcgsc.ca	37	14	59970624	59970624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	JKAMP	NM_016475	exon7	c.A770G	p.H257R	.	.	195	6	186	0	.	67
JRKL	8690	bcgsc.ca	37	11	96124828	96124828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	JRKL	NM_001261833	exon2	c.C1015A	p.R339S	.	.	121	5	100	0	.	90
KCND2	3751	broad.mit.edu;bcgsc.ca	37	7	120382615	120382615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	KCND2,brain,glioma,-2	KCND2	NM_012281	exon4	c.A1426G	p.T476A	.	.	200	10	186	0	.	517
KCNG4	93107	bcgsc.ca	37	16	84270989	84270989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KCNG4	NM_172347	exon2	c.T103C	p.S35P	.	.	98	5	71	0	.	93
KCNS3	3790	bcgsc.ca	37	2	18113536	18113536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KCNS3	NM_002252	exon3	c.G1261A	p.V421M	.	.	81	4	63	0	.	94
KCTD20	222658	bcgsc.ca	37	6	36442838	36442838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KCTD20	NM_173562	exon3	c.A433G	p.R145G	.	.	219	6	208	1	.	92
KCTD2	23510	bcgsc.ca	37	17	73045421	73045421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KCTD2	NM_015353	exon2	c.A446G	p.E149G	.	.	90	4	110	0	.	226
KIAA0232	9778	broad.mit.edu;bcgsc.ca	37	4	6865505	6865505	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIAA0232	NM_014743	exon7	c.A3396G	p.E1132E	.	.	167	6	163	0	.	92
KIAA0319	9856	bcgsc.ca	37	6	24554835	24554835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIAA0319	NM_001168375	exon19	c.T2882C	p.V961A	.	.	90	4	72	0	.	92
KIAA1107	23285	bcgsc.ca	37	1	92646580	92646580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_015237	exon8	c.A2026G	p.S676G	.	.	282	7	258	0	.	.
KIAA1257	57501	bcgsc.ca	37	3	128707640	128707640	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_020741	exon3	c.A384G	p.E128E	.	.	184	6	181	0	.	.
KIF13A	63971	bcgsc.ca	37	6	17773741	17773741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIF13A	NM_001105566	exon36	c.T4292C	p.L1431S	.	.	90	4	117	0	.	137
KIF13B	23303	bcgsc.ca	37	8	29013257	29013257	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIF13B	NM_015254	exon14	c.T1521C	p.P507P	.	.	171	5	221	0	.	22
KIF21A	55605	bcgsc.ca	37	12	39727066	39727066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIF21A	NM_001173464	exon18	c.T2435C	p.L812P	.	.	212	6	254	0	.	97
KIF24	347240	bcgsc.ca	37	9	34257186	34257186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIF24	NM_194313	exon11	c.C2419A	p.L807M	.	.	156	6	159	0	.	22
KIRREL2	84063	bcgsc.ca	37	19	36357187	36357187	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KIRREL2	NM_199180	exon15	c.T1920C	p.Y640Y	.	.	76	4	66	0	.	93
KLHL22	84861	broad.mit.edu;bcgsc.ca	37	22	20843480	20843480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KLHL22	NM_032775	exon2	c.T19C	p.F7L	.	.	158	8	163	0	.	278
KLHL7	55975	bcgsc.ca	37	7	23180512	23180512	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KLHL7	NM_001031710	exon5	c.A567G	p.R189R	.	.	83	4	73	0	.	90
KPNA7	402569	bcgsc.ca	37	7	98779668	98779668	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KPNA7	NM_001145715	exon8	c.A1155G	p.K385K	.	.	160	5	152	0	.	158
KREMEN1	83999	bcgsc.ca	37	22	29538045	29538045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KREMEN1	NM_032045	exon9	c.A1373G	p.K458R	.	.	79	4	98	0	.	659
KRT14	3861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39742690	39742690	+	Missense_Mutation	SNP	C	C	T	rs61027685	bycluster	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KRT14	NM_000526	exon1	c.G397A	p.V133M	.	.	225	48	200	0	.	91
KRT31	3881	bcgsc.ca	37	17	39550351	39550351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KRT31	NM_002277	exon7	c.T1168C	p.C390R	.	.	116	5	110	0	.	90
KRT82	3888	bcgsc.ca	37	12	52788865	52788865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KRT82	NM_033033	exon9	c.A1436G	p.E479G	.	.	123	6	120	0	.	92
KRTAP10-4	386672	bcgsc.ca	37	21	45994763	45994763	+	Silent	SNP	C	C	T	rs115169164	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KRTAP10-4	NM_198687	exon1	c.C1128T	p.P376P	.	.	167	6	160	0	C|0.980;T|0.020	90
KSR2	283455	bcgsc.ca	37	12	118199276	118199276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	KSR2	NM_173598	exon4	c.G439A	p.G147R	.	.	90	4	75	0	.	1449
LAMA3	3909	bcgsc.ca	37	18	21402341	21402341	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LAMA3	NM_001127717	exon20	c.2428+2T>A	.	.	.	83	4	116	0	.	100
LCAT	3931	bcgsc.ca	37	16	67976463	67976463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LCAT	NM_000229	exon5	c.T551C	p.L184P	.	.	221	10	166	1	.	44
LDB3	11155	bcgsc.ca	37	10	88478581	88478581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LDB3	NM_001171610	exon12	c.A1970G	p.D657G	.	.	82	4	99	0	.	92
LDOC1L	84247	bcgsc.ca	37	22	44893207	44893207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LDOC1L	NM_032287	exon2	c.T230C	p.L77P	.	.	109	5	118	0	.	69
LGALS12	85329	bcgsc.ca	37	11	63273886	63273886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LGALS12	NM_001142535	exon1	c.A22G	p.R8G	.	.	94	5	91	0	.	92
LGALS9B	284194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	20358687	20358687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LGALS9B	NM_001042685	exon5	c.C469A	p.P157T	.	.	940	172	1155	3	.	23
LGMN	5641	bcgsc.ca	37	14	93176176	93176176	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LGMN	NM_005606	exon11	c.A861G	p.K287K	.	.	133	5	134	0	.	91
LIG1	3978	bcgsc.ca	37	19	48637277	48637277	+	Missense_Mutation	SNP	C	C	A	rs141215260	byfrequency;alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LIG1	NM_000234	exon17	c.G1570T	p.G524C	.	.	76	4	82	0	C|0.999;T|0.001	722
LIPF	8513	bcgsc.ca	37	10	90438358	90438358	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LIPF	NM_001198829	exon11	c.T1147C	p.L383L	.	.	133	5	181	2	.	90
LIPJ	142910	ucsc.edu;bcgsc.ca	37	10	90351178	90351178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LIPJ	NM_001010939	exon4	c.A53G	p.D18G	.	.	41	4	101	0	.	91
LLGL2	3993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73569581	73569581	+	Silent	SNP	C	C	G	rs144386071	byfrequency;alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LLGL2	NM_004524	exon21	c.C2745G	p.P915P	.	.	254	40	224	0	C|0.997;T|0.003	251
LMO7	4008	bcgsc.ca	37	13	76393591	76393591	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LMO7	NM_015842	exon10	c.A1428G	p.E476E	.	.	96	4	95	0	.	586
LOC100507391	0	bcgsc.ca	37	3	194477335	194477335	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	61	4	42	0	.	.
LOC283914	0	bcgsc.ca	37	16	34624154	34624154	+	RNA	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	11	4	24	1	.	.
LOC644669	0	bcgsc.ca	37	18	15325992	15325992	+	RNA	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	186	38	152	0	.	.
LPIN1	23175	bcgsc.ca	37	2	11911586	11911586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LPIN1	NM_001261428	exon5	c.A524G	p.D175G	.	.	95	5	89	0	.	156
LPO	4025	bcgsc.ca	37	17	56343652	56343652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LPO	NM_006151	exon11	c.T1658C	p.I553T	.	.	88	4	78	0	.	91
LRP1B	53353	bcgsc.ca	37	2	141032109	141032109	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRP1B	NM_018557	exon85	c.T13026C	p.S4342S	.	.	154	7	175	0	.	311
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141812802	141812802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRP1B	NM_018557	exon10	c.C1435T	p.P479S	.	.	167	22	167	0	.	311
LRP2	4036	bcgsc.ca	37	2	170031839	170031839	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRP2	NM_004525	exon55	c.A10632G	p.E3544E	.	.	164	5	141	0	.	175
LRRC16B	90668	bcgsc.ca	37	14	24535668	24535668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRRC16B	NM_138360	exon35	c.A3587G	p.D1196G	.	.	145	5	116	0	.	139
LRRC71	149499	bcgsc.ca	37	1	156902671	156902671	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRRC71	NM_144702	exon15	c.T1590C	p.P530P	.	.	155	6	123	0	.	91
LRRK1	79705	bcgsc.ca	37	15	101528978	101528978	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRRK1	NM_024652	exon5	c.T573C	p.P191P	.	.	121	6	84	0	.	602
LRRK2	120892	bcgsc.ca	37	12	40619052	40619052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LRRK2	NM_198578	exon1	c.A119G	p.E40G	.	.	84	4	75	0	.	533
LZTS1	11178	bcgsc.ca	37	8	20107316	20107316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	LZTS1	NM_021020	exon3	c.G1708A	p.G570R	.	.	76	4	76	0	.	91
MACF1	23499	bcgsc.ca	37	1	39816623	39816623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MACF1	NM_012090	exon39	c.A4946G	p.E1649G	.	.	87	4	89	0	.	165
MACF1	23499	bcgsc.ca	37	1	39853465	39853465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MACF1	NM_012090	exon54	c.A8765G	p.K2922R	.	.	98	6	61	0	.	165
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140985121	140985121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAGEC3	NM_138702	exon7	c.A1577G	p.E526G	.	.	44	22	75	0	.	555
MAN2A1	4124	bcgsc.ca	37	5	109049252	109049252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAN2A1	NM_002372	exon2	c.A167G	p.D56G	.	.	146	5	117	0	.	92
MAN2C1	4123	bcgsc.ca	37	15	75659877	75659877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAN2C1	NM_001256494	exon3	c.T326C	p.V109A	.	.	86	4	57	0	.	90
MAP3K15	389840	ucsc.edu;bcgsc.ca	37	X	19418728	19418728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAP3K15	NM_001001671	exon14	c.A1898G	p.E633G	.	.	51	5	61	0	.	335
MAPK1	5594	broad.mit.edu;bcgsc.ca	37	22	22127227	22127227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MAPK1	NM_002745	exon7	c.A901G	p.R301G	.	.	283	8	285	0	.	1405
MARS	4141	bcgsc.ca	37	12	57884139	57884139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MARS	NM_004990	exon6	c.A640G	p.R214G	.	.	73	4	62	0	.	654
MCOLN3	55283	bcgsc.ca	37	1	85498566	85498566	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MCOLN3	NM_018298	exon5	c.G624A	p.L208L	.	.	131	6	108	0	.	91
MED12	9968	bcgsc.ca	37	X	70341596	70341596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MED12	NM_005120	exon7	c.C1031T	p.T344I	.	.	48	4	44	0	.	272
MED13L	23389	bcgsc.ca	37	12	116443681	116443681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MED13L	NM_015335	exon13	c.A2462G	p.E821G	.	.	239	7	302	0	.	232
MEF2BNB	729991	bcgsc.ca	37	19	19297793	19297793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001145784	exon2	c.G59T	p.S20I	.	.	69	4	92	1	.	.
MEFV	4210	bcgsc.ca	37	16	3299535	3299535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MEFV	NM_000243	exon3	c.T1156C	p.F386L	.	.	152	6	160	1	.	228
MGAT5	4249	bcgsc.ca	37	2	135180459	135180459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MGAT5	NM_002410	exon13	c.A1763G	p.E588G	.	.	204	6	169	0	.	93
MICALL2	79778	bcgsc.ca	37	7	1484916	1484916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MICALL2	NM_182924	exon6	c.G790A	p.G264S	.	.	57	4	44	0	.	90
MKLN1	4289	bcgsc.ca	37	7	131148005	131148005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MKLN1	NM_013255	exon13	c.A1555G	p.T519A	.	.	260	7	308	1	.	135
MLL2	8085	bcgsc.ca	37	12	49425999	49425999	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MLL2	NM_003482	exon39	c.C12489T	p.P4163P	.	.	87	5	73	0	.	612
MLL	4297	bcgsc.ca	37	11	118371747	118371747	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MLL	NM_001197104	exon25	c.T6204C	p.C2068C	.	.	148	7	108	0	.	1255
MLL	4297	bcgsc.ca	37	11	118375787	118375787	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MLL	NM_001197104	exon27	c.T9180C	p.S3060S	.	.	175	6	178	1	.	1255
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154890002	154890002	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MME	NM_000902	exon21	c.2076+1G>T	.	.	.	827	132	1098	0	.	516
MON2	23041	bcgsc.ca	37	12	62954347	62954347	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MON2	NM_015026	exon26	c.T3486C	p.S1162S	.	.	168	5	187	0	.	514
MORF4L1	10933	bcgsc.ca	37	15	79165379	79165379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MORF4L1	NM_206839	exon1	c.C20T	p.P7L	.	.	161	6	125	0	.	90
MPP1	4354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154013425	154013425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MPP1	NM_002436	exon7	c.G685A	p.A229T	.	.	70	30	65	0	.	132
MRGPRX3	117195	bcgsc.ca	37	11	18159011	18159011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MRGPRX3	NM_054031	exon3	c.A262G	p.I88V	.	.	184	6	173	0	.	92
MRPS15	64960	bcgsc.ca	37	1	36926908	36926908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MRPS15	NM_031280	exon4	c.A257G	p.D86G	.	.	88	4	85	0	.	91
MRTO4	51154	bcgsc.ca	37	1	19584000	19584000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MRTO4	NM_016183	exon5	c.A326G	p.K109R	.	.	54	4	38	0	.	90
MSH4	4438	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	76365354	76365354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MSH4	NM_002440	exon19	c.C2582T	p.A861V	.	.	733	42	940	1	.	660
MSS51	118490	bcgsc.ca	37	10	75184491	75184491	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001024593	exon7	c.A1203G	p.E401E	.	.	137	6	123	0	.	.
MTHFD1L	25902	bcgsc.ca	37	6	151226884	151226884	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MTHFD1L	NM_001242767	exon8	c.T882C	p.H294H	.	.	218	6	249	0	.	292
MTOR	2475	bcgsc.ca	37	1	11188599	11188599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MTOR	NM_004958	exon42	c.A5822G	p.Q1941R	.	.	78	4	56	0	.	1439
MTOR	2475	hgsc.bcm.edu	37	1	11264717	11264718	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MTOR	NM_004958	exon26	c.3845_3846insG	p.E1282fs	.	.	206	9	191	0	.	1439
MUC16	94025	bcgsc.ca	37	19	8999421	8999421	+	Missense_Mutation	SNP	G	G	C	rs75266616		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon56	c.C40754G	p.T13585S	.	.	345	24	372	12	.	566
MUC16	94025	bcgsc.ca	37	19	8999445	8999445	+	Missense_Mutation	SNP	C	C	T	rs112439001		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon56	c.G40730A	p.S13577N	.	.	383	24	405	12	C|0.500;T|0.500	566
MUC16	94025	bcgsc.ca	37	19	8999462	8999462	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon56	c.G40713A	p.L13571L	.	.	411	23	394	10	.	566
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048323	9048323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon5	c.C33308A	p.T11103N	.	.	133	22	158	1	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9024161	9024161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon18	c.A37111T	p.T12371S	.	.	241	21	254	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048324	9048324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC16	NM_024690	exon5	c.A33307C	p.T11103P	.	.	136	21	158	0	.	566
MUC5B	727897	bcgsc.ca	37	11	1262347	1262347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_002458	exon31	c.A4237G	p.S1413G	.	.	69	5	71	0	.	.
MUC7	4589	bcgsc.ca	37	4	71346870	71346870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC7	NM_001145007	exon4	c.A409G	p.T137A	.	.	236	7	250	2	.	93
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346814	71346814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUC7	NM_001145007	exon4	c.C353T	p.S118L	.	.	160	31	171	0	.	93
MUTYH	4595	bcgsc.ca	37	1	45798980	45798980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MUTYH	NM_001128425	exon4	c.A365G	p.D122G	.	.	90	5	87	0	.	1083
MYBL1	4603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67492397	67492397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYBL1	NM_001080416	exon9	c.T1072C	p.F358L	.	.	206	20	111	0	.	395
MYH13	8735	bcgsc.ca	37	17	10250056	10250056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYH13	NM_003802	exon13	c.T1204C	p.C402R	.	.	228	7	244	0	.	6
MYO16	23026	bcgsc.ca	37	13	109475481	109475481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO16	NM_001198950	exon9	c.G952A	p.A318T	.	.	53	4	41	0	.	142
MYO16	23026	bcgsc.ca	37	13	109475516	109475516	+	Silent	SNP	C	C	G	rs141603684	byfrequency;alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO16	NM_001198950	exon9	c.C987G	p.A329A	.	.	69	4	82	0	C|0.995;T|0.005	142
MYO16	23026	bcgsc.ca	37	13	109858963	109858963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO16	NM_001198950	exon35	c.C5422T	p.H1808Y	.	.	80	4	57	0	.	142
MYO19	80179	bcgsc.ca	37	17	34862866	34862866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO19	NM_001163735	exon18	c.T1580C	p.F527S	.	.	66	4	78	0	.	23
MYO1C	4641	bcgsc.ca	37	17	1381726	1381726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO1C	NM_001080779	exon11	c.T1273C	p.F425L	.	.	49	4	67	0	.	90
MYO7B	4648	bcgsc.ca	37	2	128392772	128392772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO7B	NM_001080527	exon42	c.A5713G	p.N1905D	.	.	121	5	121	1	.	47
MYO9A	4649	bcgsc.ca	37	15	72196363	72196363	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO9A	NM_006901	exon21	c.T2784C	p.S928S	.	.	77	4	80	0	.	93
MYO9B	4650	ucsc.edu	37	19	17316914	17316914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYO9B	NM_001130065	exon32	c.C5210T	p.S1737L	.	.	53	3	58	0	.	67
MYOC	4653	bcgsc.ca	37	1	171605767	171605767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYOC	NM_000261	exon3	c.G813A	p.M271I	.	.	54	4	37	0	.	226
MYRF	745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61537931	61537931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001127392	exon5	c.C674T	p.P225L	.	.	363	37	278	0	.	.
MYT1	4661	bcgsc.ca	37	20	62839452	62839452	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYT1	NM_004535	exon7	c.A903G	p.E301E	.	.	57	4	33	0	.	704
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1812887	1812887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	MYT1L	NM_015025	exon22	c.G3127A	p.G1043R	.	.	170	26	197	0	.	95
NAA25	80018	bcgsc.ca	37	12	112516047	112516047	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NAA25	NM_024953	exon7	c.G609A	p.L203L	.	.	218	6	247	0	.	155
NAB1	4664	bcgsc.ca	37	2	191555026	191555026	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NAB1	NM_005966	exon10	c.A1431G	p.K477K	.	.	130	5	145	0	.	226
NAV1	89796	bcgsc.ca	37	1	201777863	201777863	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NAV1	NM_020443	exon20	c.C4071T	p.D1357D	.	.	83	4	74	0	.	228
NCKAP1L	3071	bcgsc.ca	37	12	54930784	54930784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NCKAP1L	NM_005337	exon29	c.C3130T	p.L1044F	.	.	112	5	90	0	.	93
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11170	11170	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	ENST00000361381	exon1	c.C411T	p.G137G	.	.	194	56	196	0	.	.
ND4L	0	bcgsc.ca	37	MT	10531	10531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	ENST00000361335	exon1	c.T62C	p.V21A	.	.	161	106	195	0	.	.
ND6	0	broad.mit.edu;bcgsc.ca	37	MT	14345	14345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	ENST00000361681	exon1	c.A329G	p.D110G	.	.	212	11	234	1	.	.
ND6	0	broad.mit.edu;bcgsc.ca	37	MT	14569	14569	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	ENST00000361681	exon1	c.C105T	p.S35S	.	.	380	270	408	2	.	.
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119154261	119154261	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NDST3	NM_004784	exon9	c.T1914C	p.N638N	.	.	238	45	234	0	.	153
NDUFS1	4719	bcgsc.ca	37	2	207012553	207012553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NDUFS1	NM_001199984	exon6	c.G386A	p.G129D	.	.	189	6	160	0	.	91
NDUFV1	4723	bcgsc.ca	37	11	67378563	67378563	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NDUFV1	NM_007103	exon6	c.C798T	p.G266G	.	.	113	5	138	0	.	91
NEDD1	121441	bcgsc.ca	37	12	97337469	97337469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NEDD1	NM_001135175	exon11	c.A1447G	p.N483D	.	.	138	5	181	2	.	90
NELFA	7469	bcgsc.ca	37	4	1985125	1985125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_005663	exon11	c.A1541G	p.D514G	.	.	229	7	166	0	.	.
NELFB	25920	ucsc.edu;bcgsc.ca	37	9	140151427	140151427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_015456	exon4	c.A518G	p.E173G	.	.	58	6	38	0	.	.
NF2	4771	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	30069414	30069414	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NF2	NM_000268	exon12	c.G1279T	p.E427X	.	.	106	25	96	1	.	4696
NFATC3	4775	bcgsc.ca	37	16	68224963	68224963	+	Silent	SNP	T	T	C	rs144982349		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NFATC3	NM_173163	exon9	c.T2391C	p.P797P	.	.	154	6	189	1	T|1.000;C|0.000	92
NFX1	4799	bcgsc.ca	37	9	33295410	33295410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NFX1	NM_147134	exon2	c.G1018T	p.V340L	.	.	87	4	87	0	.	91
NHLRC1	378884	bcgsc.ca	37	6	18122051	18122051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NHLRC1	NM_198586	exon1	c.A787G	p.N263D	.	.	106	7	92	0	.	90
NHLRC2	374354	bcgsc.ca	37	10	115662353	115662353	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NHLRC2	NM_198514	exon8	c.1494+1G>A	.	.	.	128	5	174	0	.	91
NMRK1	54981	bcgsc.ca	37	9	77692433	77692433	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_017881	exon3	c.T93C	p.S31S	.	.	151	5	223	0	.	.
NMT1	4836	bcgsc.ca	37	17	43138747	43138747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NMT1	NM_021079	exon1	c.C50T	p.P17L	.	.	59	4	57	0	.	90
NOL11	25926	bcgsc.ca	37	17	65714158	65714158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NOL11	NM_015462	exon1	c.A95G	p.D32G	.	.	145	6	138	1	.	90
NOL8	55035	bcgsc.ca	37	9	95085752	95085752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NOL8	NM_017948	exon3	c.T173C	p.I58T	.	.	73	4	97	0	.	23
NOTCH3	4854	bcgsc.ca	37	19	15276275	15276275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NOTCH3	NM_000435	exon31	c.T5719C	p.S1907P	.	.	77	5	81	1	.	855
NOX3	50508	bcgsc.ca	37	6	155775954	155775954	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NOX3	NM_015718	exon3	c.A246G	p.G82G	.	.	82	4	81	0	.	91
NPAS2	4862	bcgsc.ca	37	2	101582145	101582145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NPAS2	NM_002518	exon10	c.T824C	p.L275P	.	.	141	5	125	0	.	94
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	96875607	96875608	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NR2F2	NM_021005	exon1	c.273_274del	p.91_92del	.	.	100	15	100	0	.	228
NR3C2	4306	bcgsc.ca	37	4	149357346	149357346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NR3C2	NM_001166104	exon2	c.T667C	p.F223L	.	.	98	5	66	0	.	154
NRAP	4892	bcgsc.ca	37	10	115372167	115372167	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NRAP	NM_001261463	exon30	c.A3324G	p.E1108E	.	.	186	6	147	0	.	522
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	314	44	311	0	T|0.024;A|0.976	90
NSD1	64324	bcgsc.ca	37	5	176639048	176639048	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NSD1	NM_022455	exon5	c.A3648G	p.E1216E	.	.	190	6	169	0	.	188
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5603521	5603521	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NTF3	NM_001102654	exon2	c.G180A	p.K60K	.	.	54	10	68	0	.	205
NUDT1	4521	bcgsc.ca	37	7	2290620	2290620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NUDT1	NM_198949	exon5	c.A524G	p.E175G	.	.	66	4	59	0	.	90
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135269705	135269705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NUP205	NM_015135	exon8	c.C1168T	p.R390C	.	.	153	18	161	0	.	207
NUS1	116150	bcgsc.ca	37	6	118024809	118024809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NUS1	NM_138459	exon4	c.G733T	p.G245C	.	.	120	5	129	0	.	108
NWD1	284434	bcgsc.ca	37	19	16918525	16918525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NWD1	NM_001007525	exon18	c.G3865A	p.D1289N	.	.	96	4	90	0	.	7
NWD1	284434	ucsc.edu	37	19	16860544	16860544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	NWD1	NM_001007525	exon6	c.A1091G	p.H364R	.	.	49	5	48	1	.	7
OCIAD1	54940	bcgsc.ca	37	4	48834651	48834651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OCIAD1	NM_001168254	exon2	c.A25G	p.R9G	.	.	85	4	78	0	.	68
OR10V1	390201	bcgsc.ca	37	11	59481265	59481265	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR10V1	NM_001005324	exon1	c.A54G	p.S18S	.	.	81	4	97	0	.	68
OR11H6	122748	bcgsc.ca	37	14	20692637	20692637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR11H6	NM_001004480	exon1	c.T769C	p.S257P	.	.	195	7	260	0	.	71
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247614391	247614391	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR2B11	NM_001004492	exon1	c.T894C	p.N298N	.	.	186	28	202	0	.	69
OR2W3	343171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248059698	248059698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR2W3	NM_001001957	exon1	c.G810T	p.Q270H	.	.	269	69	292	1	.	115
OR4S2	219431	bcgsc.ca	37	11	55418850	55418850	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR4S2	NM_001004059	exon1	c.A471G	p.Q157Q	.	.	150	5	195	1	.	71
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55541610	55541610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR5D13	NM_001001967	exon1	c.G697A	p.A233T	.	.	189	17	170	0	.	71
OR6K3	391114	bcgsc.ca	37	1	158687480	158687480	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR6K3	NM_001005327	exon1	c.T426C	p.A142A	.	.	143	6	123	3	.	70
OR6T1	219874	bcgsc.ca	37	11	123814481	123814481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR6T1	NM_001005187	exon1	c.T65C	p.L22P	.	.	100	5	130	0	.	69
OR8K5	219453	bcgsc.ca	37	11	55927371	55927371	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OR8K5	NM_001004058	exon1	c.T423C	p.C141C	.	.	161	6	184	1	.	72
ORC1	4998	bcgsc.ca	37	1	52850294	52850294	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ORC1	NM_004153	exon11	c.T1683C	p.P561P	.	.	67	6	81	0	.	206
OTOS	150677	bcgsc.ca	37	2	241078663	241078663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OTOS	NM_148961	exon4	c.A194G	p.D65G	.	.	139	5	121	1	.	68
OTUD7B	56957	bcgsc.ca	37	1	149939399	149939399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	OTUD7B	NM_020205	exon4	c.T322C	p.S108P	.	.	210	6	150	0	.	502
PABPC4	8761	bcgsc.ca	37	1	40036985	40036985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PABPC4	NM_003819	exon3	c.T424C	p.F142L	.	.	184	6	181	0	.	68
PADI1	29943	bcgsc.ca	37	1	17567237	17567237	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PADI1	NM_013358	exon15	c.A1740G	p.E580E	.	.	125	5	163	0	.	68
PALM	5064	bcgsc.ca	37	19	746547	746547	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PALM	NM_002579	exon9	c.A897G	p.T299T	.	.	74	6	66	0	.	68
PAPD5	64282	bcgsc.ca	37	16	50251544	50251544	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PAPD5	NM_001040284	exon6	c.A963G	p.R321R	.	.	229	6	267	1	.	205
PAPLN	89932	bcgsc.ca	37	14	73719436	73719436	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PAPLN	NM_173462	exon10	c.A966G	p.P322P	.	.	79	4	99	0	.	70
PAPOLB	56903	broad.mit.edu	37	7	4900456	4900456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PAPOLB	NM_020144	exon1	c.A986G	p.N329S	.	.	428	8	443	2	.	493
PARP8	79668	bcgsc.ca	37	5	50123881	50123881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PARP8	NM_001178055	exon21	c.T2081C	p.F694S	.	.	152	6	155	0	.	586
PASD1	139135	bcgsc.ca	37	X	150841087	150841087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PASD1	NM_173493	exon14	c.T1870C	p.F624L	.	.	205	6	201	0	.	133
PASK	23178	bcgsc.ca	37	2	242066241	242066241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PASK	NM_015148	exon10	c.T2089C	p.C697R	.	.	77	4	54	0	.	536
PAX9	5083	bcgsc.ca	37	14	37145452	37145452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PAX9	NM_006194	exon5	c.T821C	p.M274T	.	.	238	8	252	0	.	228
PCDH12	51294	broad.mit.edu;bcgsc.ca	37	5	141336039	141336039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDH12	NM_016580	exon1	c.T1378C	p.F460L	.	.	228	7	204	0	.	93
PCDH18	54510	bcgsc.ca	37	4	138451823	138451823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDH18	NM_019035	exon1	c.A1420G	p.I474V	.	.	73	5	70	0	.	185
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140210049	140210049	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHA6	NM_018909	exon1	c.A2373G	p.L791L	.	.	153	12	133	0	.	92
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140432442	140432442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHB1	NM_013340	exon1	c.G1387A	p.E463K	.	.	147	23	146	0	.	90
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140753695	140753695	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PCDHGA6	NM_018919	exon1	c.G45T	p.L15L	.	.	176	47	122	0	.	67
PDE1C	5137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31877505	31877505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PDE1C	NM_001191058	exon11	c.C1241T	p.T414I	.	.	117	11	109	0	.	94
PDE4B	5142	bcgsc.ca	37	1	66838298	66838298	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PDE4B	NM_001037341	exon17	c.A2148G	p.R716R	.	.	148	5	154	0	.	92
PDXDC2P	283970	bcgsc.ca	37	16	70072853	70072853	+	RNA	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	157	6	157	0	.	.
PEPD	5184	bcgsc.ca	37	19	33904510	33904510	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PEPD	NM_000285	exon10	c.C711T	p.R237R	.	.	77	4	71	0	.	92
PER3	8863	ucsc.edu	37	1	7887266	7887266	+	Silent	SNP	C	C	T	rs139071747		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PER3	NM_016831	exon17	c.C2253T	p.S751S	.	.	47	4	38	0	C|1.000;T|0.000	93
PGR	5241	bcgsc.ca	37	11	100920788	100920788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PGR	NM_000926	exon6	c.A2360G	p.Q787R	.	.	94	4	134	0	.	652
PHACTR1	221692	bcgsc.ca	37	6	13182810	13182810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_030948	exon7	c.T556C	p.S186P	.	.	83	9	70	6	.	.
PHACTR3	116154	bcgsc.ca	37	20	58342343	58342343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PHACTR3	NM_080672	exon5	c.A644G	p.D215G	.	.	119	5	146	0	.	93
PHKA1	5255	bcgsc.ca	37	X	71843042	71843042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PHKA1	NM_001172436	exon18	c.A1877G	p.K626R	.	.	186	6	233	0	.	134
PI4KA	5297	bcgsc.ca	37	22	21178659	21178659	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PI4KA	NM_058004	exon4	c.T411C	p.T137T	.	.	77	4	120	0	.	454
PIGQ	9091	bcgsc.ca	37	16	629087	629087	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PIGQ	NM_148920	exon7	c.C1242T	p.I414I	.	.	69	4	62	0	.	226
PIK3C2A	5286	bcgsc.ca	37	11	17118728	17118728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PIK3C2A	NM_002645	exon26	c.T4202C	p.L1401P	.	.	116	5	114	0	.	1310
PIK3C2A	5286	bcgsc.ca	37	11	17122859	17122859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PIK3C2A	NM_002645	exon24	c.A3974G	p.K1325R	.	.	80	4	100	0	.	1310
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138426053	138426053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PIK3CB	NM_006219	exon9	c.T1478C	p.V493A	.	.	265	34	257	0	.	1311
PION	54103	ucsc.edu;bcgsc.ca	37	7	76982931	76982931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PION	NM_017439	exon17	c.T1366C	p.S456P	.	.	47	4	70	0	.	514
PITPNM1	9600	bcgsc.ca	37	11	67262555	67262555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PITPNM1	NM_004910	exon17	c.T2624C	p.L875P	.	.	77	4	62	0	.	227
PLA2G7	7941	bcgsc.ca	37	6	46684133	46684133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLA2G7	NM_005084	exon4	c.A364G	p.R122G	.	.	182	6	163	0	.	90
PLCL1	5334	broad.mit.edu;bcgsc.ca	37	2	198950191	198950191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLCL1	NM_006226	exon2	c.T1950A	p.D650E	.	.	153	7	164	1	.	228
PLEK2	26499	bcgsc.ca	37	14	67862295	67862295	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLEK2	NM_016445	exon3	c.C213A	p.L71L	.	.	98	4	103	0	.	92
PLEK2	26499	ucsc.edu;bcgsc.ca	37	14	67862126	67862126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLEK2	NM_016445	exon3	c.A382G	p.S128G	.	.	47	5	47	1	.	92
PLEKHH1	57475	ucsc.edu	37	14	68038900	68038900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLEKHH1	NM_020715	exon11	c.C1634T	p.P545L	.	.	35	4	55	0	.	22
PLTP	5360	bcgsc.ca	37	20	44528135	44528135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PLTP	NM_006227	exon15	c.T1325C	p.I442T	.	.	132	6	157	0	.	91
PMM2	5373	bcgsc.ca	37	16	8941605	8941605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PMM2	NM_000303	exon8	c.A664G	p.T222A	.	.	77	4	51	0	.	91
PNMA2	10687	bcgsc.ca	37	8	26365220	26365220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PNMA2	NM_007257	exon3	c.A1052G	p.E351G	.	.	215	6	217	3	.	90
POLR2A	5430	bcgsc.ca	37	17	7417479	7417479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	POLR2A	NM_000937	exon29	c.A5896G	p.S1966G	.	.	89	5	103	0	.	91
POLR2B	5431	bcgsc.ca	37	4	57881801	57881801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	POLR2B	NM_000938	exon14	c.A1934G	p.E645G	.	.	87	5	84	0	.	92
POPDC2	64091	bcgsc.ca	37	3	119367367	119367367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	POPDC2	NM_022135	exon3	c.A749G	p.D250G	.	.	184	6	182	0	.	90
POTEC	388468	broad.mit.edu	37	18	14523463	14523463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	POTEC	NM_001137671	exon8	c.A1241G	p.E414G	.	.	1167	13	2155	1	.	3
POU3F2	5454	bcgsc.ca	37	6	99283936	99283936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	POU3F2	NM_005604	exon1	c.A1187G	p.E396G	.	.	85	4	59	0	.	90
PPA1	5464	bcgsc.ca	37	10	71973334	71973334	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PPA1	NM_021129	exon6	c.A396G	p.R132R	.	.	155	5	167	1	.	153
PPA1	5464	broad.mit.edu	37	10	71977629	71977629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PPA1	NM_021129	exon4	c.G236A	p.R79H	.	.	147	5	173	0	.	153
PPM1E	22843	bcgsc.ca	37	17	57057912	57057912	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PPM1E	NM_014906	exon7	c.A1788G	p.A596A	.	.	234	7	247	1	.	291
PPM1N	147699	bcgsc.ca	37	19	46003243	46003243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001080401	exon2	c.T976C	p.F326L	.	.	198	7	220	1	.	.
PPP1R15B	84919	bcgsc.ca	37	1	204378640	204378640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PPP1R15B	NM_032833	exon1	c.A1900G	p.T634A	.	.	89	5	58	0	.	652
PPP1R17	10842	bcgsc.ca	37	7	31736615	31736615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_006658	exon4	c.T272C	p.V91A	.	.	218	6	230	1	.	.
PPP2CB	5516	broad.mit.edu	37	8	30651432	30651432	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PPP2CB	NM_001009552	exon6	c.738+1G>A	.	.	.	217	5	294	0	.	658
PRDM2	7799	bcgsc.ca	37	1	14106570	14106570	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRDM2	NM_015866	exon8	c.A2280G	p.K760K	.	.	234	7	230	0	.	116
PRDM4	11108	bcgsc.ca	37	12	108145555	108145555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRDM4	NM_012406	exon5	c.A763G	p.I255V	.	.	81	4	68	1	.	154
PRKD2	25865	bcgsc.ca	37	19	47195213	47195213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRKD2	NM_016457	exon11	c.A1606G	p.N536D	.	.	86	6	98	0	.	759
PRR16	51334	bcgsc.ca	37	5	120021671	120021671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRR16	NM_016644	exon3	c.T113C	p.L38P	.	.	73	4	56	0	.	71
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9991578	9991578	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRRT3	NM_207351	exon2	c.T222C	p.D74D	.	.	120	25	90	0	.	90
PRSS36	146547	bcgsc.ca	37	16	31150499	31150499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRSS36	NM_173502	exon15	c.T2528C	p.V843A	.	.	131	5	129	0	.	91
PRTG	283659	bcgsc.ca	37	15	55965815	55965815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PRTG	NM_173814	exon10	c.T1606C	p.S536P	.	.	159	8	106	0	.	92
PTGIS	5740	bcgsc.ca	37	20	48160936	48160936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PTGIS	NM_000961	exon4	c.A427G	p.N143D	.	.	142	5	99	0	.	93
PTPRB	5787	bcgsc.ca	37	12	70970185	70970185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PTPRB	NM_001109754	exon11	c.A2819G	p.H940R	.	.	218	7	257	4	.	226
PTPRE	5791	bcgsc.ca	37	10	129869135	129869135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PTPRE	NM_006504	exon15	c.A1357G	p.K453E	.	.	81	4	82	0	.	227
PTPRG	5793	bcgsc.ca	37	3	62254770	62254770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PTPRG	NM_002841	exon20	c.A2935G	p.T979A	.	.	139	5	177	2	.	419
PTPRG	5793	bcgsc.ca	37	3	62278135	62278135	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PTPRG	NM_002841	exon29	c.C4095T	p.T1365T	.	.	168	5	217	0	.	419
PTPRQ	374462	bcgsc.ca	37	12	81007616	81007616	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001145026	exon26	c.4647+1G>A	.	.	.	66	4	127	0	.	.
PWP1	11137	bcgsc.ca	37	12	108096740	108096740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PWP1	NM_007062	exon9	c.A835G	p.N279D	.	.	141	5	175	0	.	90
PXDN	7837	bcgsc.ca	37	2	1652461	1652461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	PXDN	NM_012293	exon17	c.T3091A	p.Y1031N	.	.	115	5	143	0	.	166
RAB8B	51762	bcgsc.ca	37	15	63548750	63548750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RAB8B	NM_016530	exon5	c.A371G	p.D124G	.	.	165	5	162	0	.	228
RAPGEF4	11069	bcgsc.ca	37	2	173662251	173662251	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RAPGEF4	NM_007023	exon3	c.209-2A>G	.	.	.	158	5	160	1	.	274
RASA3	22821	bcgsc.ca	37	13	114817626	114817626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RASA3	NM_007368	exon3	c.T178C	p.F60L	.	.	79	4	55	0	.	658
RASGRF2	5924	bcgsc.ca	37	5	80256735	80256735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RASGRF2	NM_006909	exon1	c.T178C	p.C60R	.	.	93	6	74	0	.	725
RASSF3	283349	bcgsc.ca	37	12	65078576	65078576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RASSF3	NM_178169	exon2	c.A121G	p.K41E	.	.	62	4	54	0	.	839
RASSF4	83937	ucsc.edu;bcgsc.ca	37	10	45479554	45479554	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RASSF4	NM_032023	exon5	c.C366T	p.D122D	.	.	39	4	27	0	.	290
RAVER1	125950	bcgsc.ca	37	19	10441192	10441192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RAVER1	NM_133452	exon2	c.A281G	p.D94G	.	.	86	4	83	0	.	91
RBM45	129831	bcgsc.ca	37	2	178986060	178986060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RBM45	NM_152945	exon5	c.T827C	p.V276A	.	.	92	4	87	0	.	22
RDH10	157506	bcgsc.ca	37	8	74207787	74207787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RDH10	NM_172037	exon1	c.A263G	p.E88G	.	.	97	4	46	0	.	514
REEP4	80346	bcgsc.ca	37	8	21997594	21997594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	REEP4	NM_025232	exon4	c.T185C	p.F62S	.	.	49	4	75	1	.	91
RFWD3	55159	bcgsc.ca	37	16	74678605	74678605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RFWD3	NM_018124	exon5	c.T821C	p.L274P	.	.	201	6	154	0	.	522
RHOT1	55288	bcgsc.ca	37	17	30510246	30510246	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RHOT1	NM_001033568	exon8	c.T495C	p.A165A	.	.	421	9	353	0	.	93
RHOT2	89941	bcgsc.ca	37	16	722265	722265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RHOT2	NM_138769	exon15	c.A1207G	p.K403E	.	.	66	4	50	0	.	91
RLTPR	146206	bcgsc.ca	37	16	67688273	67688273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RLTPR	NM_001013838	exon31	c.C3260T	p.A1087V	.	.	51	4	45	0	.	67
RNF145	153830	ucsc.edu	37	5	158630641	158630641	+	Silent	SNP	C	C	T	rs74841177		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RNF145	NM_001199380	exon2	c.G75A	p.K25K	.	.	41	6	43	3	.	525
RNU6-81	100873780	bcgsc.ca	37	2	132218702	132218702	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	78	4	88	0	.	.
ROS1	6098	bcgsc.ca	37	6	117710706	117710706	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ROS1	NM_002944	exon12	c.T1566C	p.A522A	.	.	176	6	159	0	.	1353
RPGRIP1L	23322	bcgsc.ca	37	16	53674992	53674992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RPGRIP1L	NM_001127897	exon19	c.G2911A	p.V971I	.	.	117	5	130	0	.	91
RPL26	6154	bcgsc.ca	37	17	8285494	8285494	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RPL26	NM_000987	exon2	c.A135G	p.R45R	.	.	67	4	87	0	.	227
RPN2	6185	bcgsc.ca	37	20	35827487	35827487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RPN2	NM_002951	exon4	c.T338C	p.L113P	.	.	210	6	194	1	.	93
RTN3	10313	bcgsc.ca	37	11	63520050	63520050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RTN3	NM_001265589	exon5	c.A2810G	p.H937R	.	.	274	8	266	0	.	91
RYR3	6263	bcgsc.ca	37	15	33872322	33872322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	RYR3	NM_001243996	exon13	c.A1414G	p.R472G	.	.	122	6	108	0	.	520
SALL1	6299	broad.mit.edu;bcgsc.ca	37	16	51173735	51173735	+	Missense_Mutation	SNP	C	C	T	rs200755920		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SALL1	NM_002968	exon2	c.G2398A	p.D800N	.	.	406	16	338	0	C|0.999;T|0.000	98
SAMD9L	219285	bcgsc.ca	37	7	92761244	92761244	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SAMD9L	NM_152703	exon5	c.T4041C	p.L1347L	.	.	56	4	77	0	.	94
SCAF11	9169	bcgsc.ca	37	12	46320355	46320355	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SCAF11	NM_004719	exon11	c.A3129G	p.K1043K	.	.	187	6	185	0	.	93
SCFD2	152579	bcgsc.ca	37	4	53773664	53773664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SCFD2	NM_152540	exon7	c.T1802C	p.L601P	.	.	166	6	142	0	.	93
SCFD2	152579	bcgsc.ca	37	4	53786978	53786978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SCFD2	NM_152540	exon6	c.T1621C	p.F541L	.	.	123	5	149	0	.	93
SCN8A	6334	bcgsc.ca	37	12	52139736	52139736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SCN8A	NM_014191	exon13	c.T2048C	p.V683A	.	.	87	5	75	0	.	29
SCNN1D	6339	hgsc.bcm.edu	37	1	1222261	1222262	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SCNN1D	NM_001130413	exon8	c.1025_1026insC	p.V342fs	.	.	169	10	131	0	.	90
SCUBE2	57758	bcgsc.ca	37	11	9052387	9052387	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SCUBE2	NM_020974	exon17	c.T2088C	p.G696G	.	.	56	4	61	0	.	92
SDK2	54549	bcgsc.ca	37	17	71431721	71431721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SDK2	NM_001144952	exon9	c.A1063G	p.T355A	.	.	85	6	50	0	.	24
SDR39U1	56948	bcgsc.ca	37	14	24911606	24911606	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SDR39U1	NM_020195	exon2	c.A69G	p.R23R	.	.	80	4	80	0	.	46
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151108527	151108527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SEMA6C	NM_001178061	exon13	c.C1219A	p.P407T	.	.	452	170	284	0	.	92
SEPT7	989	bcgsc.ca	37	7	35925488	35925488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001011553	exon9	c.A868G	p.R290G	.	.	51	4	63	0	.	.
SERINC3	10955	bcgsc.ca	37	20	43135609	43135609	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SERINC3	NM_006811	exon6	c.T642C	p.Y214Y	.	.	134	6	149	0	.	229
SERPINB13	5275	bcgsc.ca	37	18	61262263	61262263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SERPINB13	NM_012397	exon7	c.A616G	p.S206G	.	.	88	5	106	0	.	227
SFI1	9814	bcgsc.ca	37	22	32012858	32012858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SFI1	NM_001007467	exon30	c.C3428T	p.T1143I	.	.	57	4	100	0	.	90
SGK3	23678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67752248	67752248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SGK3	NM_001033578	exon11	c.A752G	p.H251R	.	.	183	72	145	1	.	1003
SH3D21	79729	broad.mit.edu;bcgsc.ca	37	1	36774016	36774016	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SH3D21	NM_001162530	exon9	c.A666G	p.E222E	.	.	90	7	51	0	.	91
SH3GL3	6457	bcgsc.ca	37	15	84286862	84286862	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SH3GL3	NM_003027	exon9	c.C867T	p.C289C	.	.	129	5	157	0	.	92
SHANK2	22941	bcgsc.ca	37	11	70653163	70653163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SHANK2	.	.	.	.	.	.	72	4	45	0	.	94
SHH	6469	bcgsc.ca	37	7	155604717	155604717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SHH	NM_000193	exon1	c.A100G	p.R34G	.	.	245	14	226	5	.	1134
SHPRH	257218	bcgsc.ca	37	6	146247388	146247388	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SHPRH	NM_173082	exon16	c.G3273A	p.R1091R	.	.	72	5	78	0	.	92
SIGLEC8	27181	bcgsc.ca	37	19	51960444	51960444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SIGLEC8	NM_014442	exon3	c.G775T	p.A259S	.	.	70	5	82	0	.	94
SIGLEC9	27180	bcgsc.ca	37	19	51631272	51631272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SIGLEC9	NM_001198558	exon5	c.T1082C	p.L361P	.	.	216	7	207	2	.	91
SLC10A2	6555	bcgsc.ca	37	13	103701664	103701664	+	Silent	SNP	G	G	T	rs201839548	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC10A2	NM_000452	exon5	c.C894A	p.L298L	.	.	137	5	159	0	.	94
SLC12A4	6560	bcgsc.ca	37	16	67997872	67997872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC12A4	NM_001145963	exon1	c.T59C	p.V20A	.	.	155	6	77	0	.	91
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122787291	122787291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC13A1	NM_022444	exon7	c.C734G	p.A245G	.	.	168	29	163	0	.	92
SLC16A10	117247	broad.mit.edu	37	6	111540133	111540133	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC16A10	NM_018593	exon5	c.C1203T	p.S401S	.	.	779	7	835	0	.	514
SLC18B1	116843	bcgsc.ca	37	6	133100463	133100463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_052831	exon7	c.C739A	p.L247I	.	.	90	4	137	0	.	.
SLC22A12	116085	bcgsc.ca	37	11	64359099	64359099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC22A12	NM_144585	exon1	c.T71C	p.L24P	.	.	68	4	89	0	.	91
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7967043	7967043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC2A14	NM_153449	exon12	c.C1432T	p.R478C	.	.	195	15	202	0	.	91
SLC2A2	6514	bcgsc.ca	37	3	170716092	170716092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC2A2	NM_000340	exon10	c.A1264G	p.M422V	.	.	175	6	123	0	.	515
SLC2A6	11182	bcgsc.ca	37	9	136339105	136339105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC2A6	NM_017585	exon7	c.T1033C	p.S345P	.	.	106	5	84	0	.	90
SLC2A7	155184	bcgsc.ca	37	1	9083038	9083038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC2A7	NM_207420	exon3	c.T250C	p.F84L	.	.	121	5	96	1	.	514
SLC35B1	10237	bcgsc.ca	37	17	47780564	47780564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC35B1	NM_005827	exon7	c.A748G	p.S250G	.	.	82	4	88	0	.	90
SLC38A7	55238	bcgsc.ca	37	16	58712741	58712741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC38A7	NM_018231	exon4	c.A328G	p.S110G	.	.	103	5	77	0	.	69
SLC6A12	6539	bcgsc.ca	37	12	313846	313846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC6A12	NM_001122848	exon4	c.A233T	p.Y78F	.	.	65	4	72	0	.	91
SLC6A15	55117	bcgsc.ca	37	12	85266513	85266513	+	Silent	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC6A15	NM_182767	exon8	c.C1170A	p.P390P	.	.	109	5	134	0	.	93
SLC6A3	6531	bcgsc.ca	37	5	1411386	1411386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC6A3	NM_001044	exon9	c.T1241C	p.M414T	.	.	48	4	58	1	.	157
SLC6A4	6532	bcgsc.ca	37	17	28544201	28544201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC6A4	NM_001045	exon6	c.G820T	p.V274F	.	.	151	6	148	0	.	94
SLC7A10	56301	bcgsc.ca	37	19	33702387	33702387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC7A10	NM_019849	exon6	c.T845C	p.F282S	.	.	108	5	100	0	.	91
SLC8A3	6547	bcgsc.ca	37	14	70515576	70515576	+	Missense_Mutation	SNP	A	A	G	rs147788335		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC8A3	NM_183002	exon7	c.T2315C	p.I772T	.	.	69	4	88	0	A|1.000;G|0.000	225
SLC9A2	6549	bcgsc.ca	37	2	103299893	103299893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC9A2	NM_003048	exon4	c.T1178C	p.F393S	.	.	327	8	279	0	.	157
SLC9A3	6550	hgsc.bcm.edu	37	5	488534	488535	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLC9A3	NM_004174	exon3	c.572_573insG	p.V191fs	.	.	135	11	94	0	.	90
SLCO1A2	6579	broad.mit.edu;bcgsc.ca	37	12	21445184	21445184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLCO1A2	NM_134431	exon13	c.G1524T	p.L508F	.	.	85	7	89	0	.	157
SLCO1B3	28234	bcgsc.ca	37	12	21069114	21069114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SLCO1B3	NM_019844	exon16	c.T2042C	p.V681A	.	.	196	6	276	0	.	155
SMAD9	4093	bcgsc.ca	37	13	37427812	37427812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SMAD9	NM_001127217	exon6	c.G1004T	p.G335V	.	.	67	5	73	0	.	414
SMC4	10051	bcgsc.ca	37	3	160135549	160135549	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SMC4	NM_005496	exon10	c.A1476G	p.V492V	.	.	89	4	78	0	.	291
SMYD4	114826	bcgsc.ca	37	17	1703208	1703208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SMYD4	NM_052928	exon5	c.A1480G	p.R494G	.	.	61	4	68	0	.	230
SND1	27044	bcgsc.ca	37	7	127714732	127714732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SND1	NM_014390	exon17	c.A1958G	p.K653R	.	.	73	5	64	0	.	92
SNRNP200	23020	bcgsc.ca	37	2	96964113	96964113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SNRNP200	NM_014014	exon9	c.A1028G	p.K343R	.	.	280	7	262	0	.	162
SNRPF	6636	bcgsc.ca	37	12	96259814	96259814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SNRPF	NM_003095	exon4	c.G226A	p.E76K	.	.	206	7	243	1	.	90
SNTB1	6641	bcgsc.ca	37	8	121554048	121554048	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SNTB1	NM_021021	exon7	c.1524+2T>A	.	.	.	159	5	146	2	.	228
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	601376	601376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SOLH	NM_005632	exon8	c.G2141A	p.R714H	.	.	44	7	27	0	.	523
SPA17	53340	bcgsc.ca	37	11	124564335	124564335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPA17	NM_017425	exon5	c.A449G	p.N150S	.	.	126	5	132	0	.	90
SPANXN3	139067	bcgsc.ca	37	X	142596818	142596818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPANXN3	NM_001009609	exon2	c.G252T	p.E84D	.	.	247	14	301	1	.	132
SPATA13	221178	bcgsc.ca	37	13	24823658	24823658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPATA13	NM_001166271	exon3	c.A1697G	p.E566G	.	.	77	4	93	0	.	229
SPATA25	128497	bcgsc.ca	37	20	44515276	44515276	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_080608	exon2	c.T564C	p.H188H	.	.	99	5	82	2	.	.
SPATA2	9825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	48523374	48523374	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPATA2	NM_006038	exon3	c.G345T	p.T115T	.	.	242	22	186	0	.	91
SPEG	10290	bcgsc.ca	37	2	220315933	220315933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPEG	NM_005876	exon5	c.A2189G	p.N730S	.	.	133	5	109	0	.	383
SPG11	80208	bcgsc.ca	37	15	44887480	44887480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPG11	NM_025137	exon26	c.A4612G	p.R1538G	.	.	188	7	191	0	.	95
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158623173	158623173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SPTA1	NM_003126	exon22	c.C3079A	p.P1027T	.	.	232	97	203	0	.	142
SRPK2	6733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104787043	104787043	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SRPK2	NM_182692	exon8	c.G684A	p.P228P	.	.	277	27	312	2	.	805
SRRM2	23524	bcgsc.ca	37	16	2813469	2813469	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SRRM2	NM_016333	exon11	c.A2940G	p.K980K	.	.	98	7	86	0	.	93
SSH1	54434	bcgsc.ca	37	12	109186085	109186085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SSH1	NM_001161331	exon13	c.A1903G	p.R635G	.	.	214	6	226	1	.	94
ST14	6768	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130067803	130067803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ST14	NM_021978	exon12	c.G1422T	p.W474C	.	.	65	9	48	0	.	94
ST3GAL5	8869	bcgsc.ca	37	2	86067276	86067276	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ST3GAL5	NM_003896	exon7	c.T1248C	p.R416R	.	.	264	7	259	1	.	90
ST5	6764	bcgsc.ca	37	11	8718210	8718210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ST5	NM_213618	exon18	c.G3056A	p.C1019Y	.	.	85	4	79	0	.	227
STAB1	23166	bcgsc.ca	37	3	52539912	52539912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	STAB1	NM_015136	exon16	c.T1709C	p.L570P	.	.	95	4	84	0	.	139
STAB2	55576	bcgsc.ca	37	12	104056766	104056766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	STAB2	NM_017564	exon18	c.A2012G	p.E671G	.	.	137	7	120	0	.	104
STAT2	6773	bcgsc.ca	37	12	56740660	56740660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	STAT2	NM_005419	exon20	c.T1804C	p.F602L	.	.	224	7	165	1	.	847
STIL	6491	bcgsc.ca	37	1	47737747	47737747	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	STIL	NM_003035	exon14	c.2383+1G>A	.	.	.	156	6	110	1	.	659
STUB1	10273	bcgsc.ca	37	16	731875	731875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	STUB1	NM_005861	exon4	c.A607G	p.K203E	.	.	65	4	56	0	.	226
STYK1	55359	bcgsc.ca	37	12	10787178	10787178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	STYK1	NM_018423	exon3	c.G40A	p.D14N	.	.	86	4	117	0	.	1379
SULT1C2	6819	bcgsc.ca	37	2	108921154	108921154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SULT1C2	NM_176825	exon6	c.A533G	p.K178R	.	.	80	4	98	0	.	91
SUN5	140732	bcgsc.ca	37	20	31590455	31590455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SUN5	NM_080675	exon3	c.T149C	p.L50P	.	.	241	9	238	2	.	91
SUPT4H1	6827	bcgsc.ca	37	17	56428820	56428820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SUPT4H1	NM_003168	exon2	c.T119C	p.L40P	.	.	232	6	238	0	.	182
SVIL	6840	bcgsc.ca	37	10	29762904	29762904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SVIL	NM_021738	exon30	c.A5392G	p.K1798E	.	.	95	4	79	1	.	96
SYNE1	23345	bcgsc.ca	37	6	152712450	152712450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SYNE1	NM_033071	exon52	c.A7987G	p.S2663G	.	.	208	7	212	0	.	607
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152674871	152674871	+	Missense_Mutation	SNP	G	G	T	rs201704617	alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SYNE1	NM_182961	exon68	c.C10935A	p.H3645Q	.	.	132	21	122	0	G|0.999;A|0.001	607
SYNE2	23224	bcgsc.ca	37	14	64656830	64656830	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SYNE2	NM_182914	exon99	c.A17913G	p.L5971L	.	.	148	5	180	0	.	164
SZT2	23334	bcgsc.ca	37	1	43906208	43906208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	SZT2	NM_015284	exon51	c.C7124A	p.P2375H	.	.	85	4	100	0	.	144
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104640417	104640417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TACR3	NM_001059	exon1	c.C416A	p.T139K	.	.	128	17	128	0	.	525
TAGAP	117289	bcgsc.ca	37	6	159464672	159464672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TAGAP	NM_138810	exon4	c.C97T	p.H33Y	.	.	138	5	163	0	.	91
TAOK1	57551	bcgsc.ca	37	17	27835032	27835032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TAOK1	NM_025142	exon14	c.A1457G	p.K486R	.	.	163	5	147	0	.	521
TBC1D14	57533	bcgsc.ca	37	4	7000819	7000819	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TBC1D14	NM_001113361	exon6	c.A1053G	p.K351K	.	.	121	5	117	1	.	92
TBL3	10607	bcgsc.ca	37	16	2028010	2028010	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TBL3	NM_006453	exon19	c.G2010A	p.L670L	.	.	133	5	102	0	.	90
TCAIM	285343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44449032	44449032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_173826	exon11	c.T1349G	p.V450G	.	.	362	56	376	0	.	.
TCF7	6932	bcgsc.ca	37	5	133479327	133479327	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TCF7	NM_003202	exon9	c.C1071A	p.T357T	.	.	75	4	77	0	.	90
TCL6	27004	bcgsc.ca	37	14	96137703	96137703	+	RNA	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TCL6	.	.	.	.	.	.	69	4	57	0	.	658
TCTN3	26123	bcgsc.ca	37	10	97440343	97440343	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TCTN3	NM_015631	exon13	c.T1476C	p.C492C	.	.	95	4	132	1	.	22
TEKT1	83659	bcgsc.ca	37	17	6718539	6718539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TEKT1	NM_053285	exon5	c.T572C	p.L191P	.	.	334	8	346	1	.	92
TENM1	10178	bcgsc.ca	37	X	123519649	123519649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001163278	exon29	c.T5954C	p.L1985P	.	.	122	6	126	0	.	.
TEX10	54881	broad.mit.edu;bcgsc.ca	37	9	103090078	103090078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TEX10	NM_001161584	exon8	c.C1801G	p.R601G	.	.	235	14	292	0	.	92
TFPT	29844	bcgsc.ca	37	19	54617836	54617836	+	Silent	SNP	G	G	T	rs142515991	byfrequency;alternate_allele	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TFPT	NM_013342	exon2	c.C268A	p.R90R	.	.	58	4	67	0	G|1.000;A|0.000	658
TGM3	7053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2321189	2321189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TGM3	NM_003245	exon13	c.G2044T	p.A682S	.	.	141	12	122	0	.	139
THPO	7066	ucsc.edu	37	3	184090948	184090948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	THPO	NM_000460	exon6	c.A415G	p.T139A	.	.	44	5	58	0	.	91
TIMP3	7078	bcgsc.ca	37	22	33253286	33253286	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TIMP3	NM_000362	exon3	c.A255G	p.E85E	.	.	185	9	212	1	.	226
TIMP4	7079	bcgsc.ca	37	3	12200209	12200209	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TIMP4	NM_003256	exon1	c.G132A	p.S44S	.	.	92	4	43	0	.	226
TJAP1	93643	bcgsc.ca	37	6	43473543	43473543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TJAP1	NM_001146016	exon11	c.C1624T	p.R542C	.	.	52	4	30	0	.	90
TLR6	10333	broad.mit.edu	37	4	38828973	38828973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TLR6	NM_006068	exon2	c.C2122T	p.Q708X	.	.	247	7	282	0	.	524
TM9SF4	9777	bcgsc.ca	37	20	30734648	30734648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TM9SF4	NM_014742	exon9	c.A944G	p.E315G	.	.	77	4	119	0	.	514
TMBIM6	7009	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50152248	50152248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMBIM6	NM_001098576	exon6	c.T592C	p.Y198H	.	.	206	26	205	1	.	90
TMEM115	11070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50396005	50396005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM115	NM_007024	exon1	c.G490A	p.V164M	.	.	24	7	24	0	.	278
TMEM30A	55754	ucsc.edu;bcgsc.ca	37	6	75974945	75974945	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM30A	NM_018247	exon4	c.453+2T>A	.	.	.	45	4	54	0	.	90
TMEM61	199964	bcgsc.ca	37	1	55457692	55457692	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TMEM61	NM_182532	exon3	c.T549C	p.A183A	.	.	79	4	68	0	.	68
TNKS1BP1	85456	bcgsc.ca	37	11	57081219	57081219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNKS1BP1	NM_033396	exon5	c.T943C	p.S315P	.	.	226	10	210	4	.	91
TNNC2	7125	bcgsc.ca	37	20	44453246	44453246	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNNC2	NM_003279	exon3	c.T87C	p.A29A	.	.	73	4	50	0	.	91
TNP1	7141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217724619	217724619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNP1	NM_003284	exon1	c.G139T	p.A47S	.	.	226	37	221	0	.	90
TNRC18	84629	bcgsc.ca	37	7	5364818	5364818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNRC18	NM_001080495	exon20	c.T6209C	p.L2070S	.	.	142	5	95	1	.	46
TNRC6A	27327	bcgsc.ca	37	16	24801508	24801508	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNRC6A	NM_014494	exon6	c.A1545G	p.G515G	.	.	131	5	123	0	.	92
TNXB	7148	bcgsc.ca	37	6	32062917	32062917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TNXB	NM_019105	exon4	c.T2294C	p.V765A	.	.	91	5	128	0	.	90
TOM1L1	10040	bcgsc.ca	37	17	52991145	52991145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TOM1L1	NM_005486	exon5	c.A409G	p.S137G	.	.	215	6	176	0	.	91
TOM1L1	10040	bcgsc.ca	37	17	53016327	53016327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TOM1L1	NM_005486	exon11	c.C1076A	p.P359H	.	.	81	4	126	0	.	91
TOM1L2	146691	bcgsc.ca	37	17	17752171	17752171	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TOM1L2	NM_001082968	exon14	c.G1341A	p.K447K	.	.	82	4	64	0	.	90
TOP3A	7156	bcgsc.ca	37	17	18181123	18181123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TOP3A	NM_004618	exon18	c.T2693C	p.L898P	.	.	61	5	55	0	.	228
TOPBP1	11073	bcgsc.ca	37	3	133327472	133327472	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TOPBP1	NM_007027	exon27	c.G4332A	p.L1444L	.	.	205	6	188	0	.	540
TOX4	9878	bcgsc.ca	37	14	21957522	21957522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TOX4	NM_014828	exon5	c.T770C	p.V257A	.	.	246	7	293	1	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	TP53,NS,carcinoma,0	TP53	NM_000546	exon6	c.376-1G>A	.	.	.	50	8	56	0	.	70225
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43749109	43749109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TP53BP1	NM_001141980	exon12	c.C1697G	p.P566R	.	.	174	34	204	0	.	294
TPP2	7174	bcgsc.ca	37	13	103317147	103317147	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TPP2	NM_003291	exon26	c.A3204G	p.E1068E	.	.	76	4	66	0	.	92
TRAF1	7185	bcgsc.ca	37	9	123667490	123667490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRAF1	NM_005658	exon8	c.C1059A	p.N353K	.	.	75	4	84	0	.	229
TRAK2	66008	bcgsc.ca	37	2	202245596	202245596	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRAK2	NM_015049	exon16	c.T2415C	p.S805S	.	.	146	5	138	1	.	90
TRDMT1	1787	bcgsc.ca	37	10	17191107	17191107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRDMT1	NM_004412	exon11	c.T1108C	p.Y370H	.	.	77	4	57	0	.	227
TRERF1	55809	bcgsc.ca	37	6	42236676	42236676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRERF1	NM_033502	exon5	c.A653G	p.K218R	.	.	59	4	48	0	.	230
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59059680	59059680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM28	NM_005762	exon8	c.G1121A	p.R374Q	.	.	129	34	121	0	.	870
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140401304	140401304	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM42	NM_152616	exon2	c.C342A	p.S114S	.	.	119	15	111	0	.	227
TRIM66	9866	bcgsc.ca	37	11	8639543	8639543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRIM66	NM_014818	exon20	c.A3599G	p.E1200G	.	.	89	4	96	0	.	68
TRPC4	7223	bcgsc.ca	37	13	38211054	38211054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRPC4	NM_003306	exon11	c.A2935G	p.T979A	.	.	190	7	226	2	.	159
TRPC6	7225	bcgsc.ca	37	11	101342092	101342092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRPC6	NM_004621	exon9	c.T2231C	p.F744S	.	.	86	4	63	0	.	93
TRRAP	8295	bcgsc.ca	37	7	98495470	98495470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRRAP	NM_001244580	exon8	c.A614G	p.E205G	.	.	153	8	165	0	.	923
TRUB1	142940	bcgsc.ca	37	10	116735122	116735122	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TRUB1	NM_139169	exon8	c.T1034A	p.V345E	.	.	63	4	66	0	.	90
TSKU	25987	bcgsc.ca	37	11	76506832	76506832	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TSKU	NM_015516	exon2	c.C172T	p.L58L	.	.	118	6	86	0	.	90
TSNAXIP1	55815	bcgsc.ca	37	16	67859887	67859887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TSNAXIP1	NM_018430	exon9	c.T890C	p.M297T	.	.	76	4	89	0	.	90
TSPAN1	10103	broad.mit.edu	37	1	46649938	46649938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TSPAN1	NM_005727	exon4	c.C133T	p.P45S	.	.	600	12	594	1	.	91
TSPYL6	388951	bcgsc.ca	37	2	54482219	54482219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TSPYL6	NM_001003937	exon1	c.A1070G	p.H357R	.	.	222	7	201	0	.	90
TSSC4	10078	bcgsc.ca	37	11	2424357	2424357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TSSC4	NM_005706	exon2	c.A494T	p.Y165F	.	.	84	4	71	0	.	90
TST	7263	bcgsc.ca	37	22	37407252	37407252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TST	NM_003312	exon3	c.A710G	p.K237R	.	.	162	10	134	4	.	90
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32859027	32859027	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTC27	NM_017735	exon3	c.C351T	p.H117H	.	.	461	74	456	0	.	90
TTC37	9652	bcgsc.ca	37	5	94858927	94858927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTC37	NM_014639	exon18	c.A1736G	p.Q579R	.	.	136	5	117	0	.	94
TTF1	7270	broad.mit.edu	37	9	135266028	135266028	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTF1	NM_007344	exon7	c.A2178G	p.E726E	.	.	445	7	466	1	.	94
TTN	7273	broad.mit.edu	37	2	179615939	179615939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTN	NM_133379	exon46	c.A11188G	p.R3730G	.	.	239	6	312	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179395002	179395002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TTN	NM_001267550	exon358	c.C106340G	p.P35447R	.	.	134	21	131	0	.	636
TUBA1C	84790	bcgsc.ca	37	12	49666775	49666775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TUBA1C	NM_032704	exon4	c.A1115G	p.Q372R	.	.	175	6	152	0	.	90
TXLNG	55787	bcgsc.ca	37	X	16859886	16859886	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TXLNG	NM_018360	exon10	c.C1584T	p.D528D	.	.	74	4	70	0	.	130
TYSND1	219743	bcgsc.ca	37	10	71903635	71903635	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	TYSND1	NM_173555	exon2	c.T1260C	p.D420D	.	.	71	4	84	0	.	135
UBASH3B	84959	bcgsc.ca	37	11	122646933	122646933	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UBASH3B	NM_032873	exon2	c.A168G	p.K56K	.	.	80	4	61	0	.	68
UBE2Q1	55585	bcgsc.ca	37	1	154527952	154527952	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UBE2Q1	NM_017582	exon3	c.T489C	p.P163P	.	.	223	6	160	1	.	226
UBP1	7342	bcgsc.ca	37	3	33434868	33434868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UBP1	NM_014517	exon14	c.T1469C	p.L490P	.	.	205	6	221	1	.	537
UBR4	23352	bcgsc.ca	37	1	19426164	19426164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UBR4	NM_020765	exon90	c.T13229C	p.V4410A	.	.	83	4	85	0	.	612
UGT1A6	54578	broad.mit.edu	37	2	234602457	234602457	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UGT1A6	NM_001072	exon1	c.C807T	p.P269P	.	.	306	7	265	0	.	71
UHRF2	115426	bcgsc.ca	37	9	6460630	6460630	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UHRF2	NM_152896	exon4	c.A702G	p.R234R	.	.	94	4	104	0	.	721
UNC5D	137970	bcgsc.ca	37	8	35583989	35583989	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UNC5D	NM_080872	exon10	c.A1623G	p.E541E	.	.	79	4	106	0	.	96
URB2	9816	bcgsc.ca	37	1	229783443	229783443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	URB2	NM_014777	exon7	c.A4093G	p.S1365G	.	.	90	4	81	0	.	174
URI1	8725	bcgsc.ca	37	19	30498544	30498544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_003796	exon7	c.A685G	p.S229G	.	.	76	4	70	0	.	.
USP9Y	8287	bcgsc.ca	37	Y	14832628	14832628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	USP9Y	NM_004654	exon4	c.T203C	p.F68S	.	.	197	6	182	0	.	136
UTY	7404	bcgsc.ca	37	Y	15481158	15481158	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	UTY	NM_001258259	exon9	c.A717G	p.K239K	.	.	178	6	229	0	.	136
VAMP2	6844	bcgsc.ca	37	17	8065573	8065573	+	Silent	SNP	C	C	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VAMP2	NM_014232	exon2	c.G117T	p.V39V	.	.	64	4	51	0	.	90
VEZF1	7716	bcgsc.ca	37	17	56056607	56056607	+	Silent	SNP	C	C	T	rs73995411	byfrequency	TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VEZF1	NM_007146	exon5	c.G1044A	p.Q348Q	.	.	245	22	241	15	C|0.969;T|0.031	136
VEZT	55591	broad.mit.edu	37	12	95660178	95660178	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VEZT	NM_017599	exon5	c.T480C	p.L160L	.	.	599	11	671	1	.	23
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu	37	3	11606425	11606426	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VGLL4	NM_001128219	exon3	c.340_341del	p.114_114del	.	.	105	11	80	0	.	91
VPS26A	9559	bcgsc.ca	37	10	70930932	70930932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VPS26A	NM_001035260	exon8	c.A748G	p.S250G	.	.	198	6	232	0	.	90
VPS33A	65082	bcgsc.ca	37	12	122735565	122735565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VPS33A	NM_022916	exon5	c.A565G	p.I189V	.	.	93	5	70	0	.	91
VPS33B	26276	bcgsc.ca	37	15	91549220	91549220	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VPS33B	NM_018668	exon12	c.T922C	p.L308L	.	.	97	4	76	0	.	92
VPS9D1	9605	bcgsc.ca	37	16	89776238	89776238	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_004913	exon11	c.C1335T	p.C445C	.	.	86	5	82	0	.	.
VWA5B1	127731	bcgsc.ca	37	1	20677380	20677380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001039500	exon20	c.T2984C	p.L995P	.	.	163	5	194	2	.	.
VWA9	81556	broad.mit.edu;bcgsc.ca	37	15	65883977	65883977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001207058	exon9	c.T1025C	p.L342P	.	.	171	8	174	1	.	.
VWF	7450	bcgsc.ca	37	12	6219748	6219748	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	VWF	NM_000552	exon5	c.A324G	p.R108R	.	.	78	4	69	0	.	163
WDFY3	23001	bcgsc.ca	37	4	85731353	85731353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	WDFY3	NM_014991	exon14	c.C2032A	p.Q678K	.	.	121	5	129	0	.	93
WDR24	84219	ucsc.edu;bcgsc.ca	37	16	736891	736891	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	WDR24	NM_032259	exon3	c.T1185C	p.S395S	.	.	29	4	32	0	.	91
WHSC1	7468	bcgsc.ca	37	4	1920335	1920335	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	WHSC1	NM_133335	exon5	c.A1395G	p.Q465Q	.	.	91	4	67	1	.	664
XIRP1	165904	bcgsc.ca	37	3	39229960	39229960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	XIRP1	NM_001198621	exon2	c.A977G	p.E326G	.	.	191	6	142	0	.	158
XIRP2	129446	bcgsc.ca	37	2	168100022	168100022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	XIRP2	NM_152381	exon9	c.T2120C	p.L707P	.	.	150	5	182	1	.	104
XPNPEP2	7512	bcgsc.ca	37	X	128881676	128881676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	XPNPEP2	NM_003399	exon7	c.A584G	p.E195G	.	.	153	5	132	0	.	130
XXYLT1	152002	bcgsc.ca	37	3	194877304	194877304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_152531	exon3	c.T659C	p.L220P	.	.	64	5	70	0	.	.
YWHAG	7532	broad.mit.edu	37	7	75988086	75988086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	YWHAG	NM_012479	exon1	c.G40A	p.A14T	.	.	201	30	133	3	.	523
ZAK	0	bcgsc.ca	37	2	174062756	174062756	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZAK	NM_133646	exon8	c.T585C	p.V195V	.	.	79	4	76	0	.	522
ZAP70	7535	bcgsc.ca	37	2	98350009	98350009	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZAP70	NM_001079	exon8	c.T840C	p.P280P	.	.	240	8	218	1	.	955
ZC3H13	23091	broad.mit.edu	37	13	46543331	46543331	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZC3H13	NM_015070	exon14	c.T3348C	p.P1116P	.	.	69	12	71	2	.	92
ZEB2	9839	bcgsc.ca	37	2	145156700	145156700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZEB2	NM_014795	exon8	c.A2054G	p.Q685R	.	.	309	9	298	3	.	297
ZFAND4	93550	bcgsc.ca	37	10	46122126	46122126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001128324	exon7	c.T1145C	p.V382A	.	.	165	5	229	0	.	.
ZFP106	64397	broad.mit.edu;bcgsc.ca	37	15	42743293	42743293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZFP106	NM_022473	exon2	c.A1108G	p.N370D	.	.	224	6	186	1	.	515
ZFP28	140612	bcgsc.ca	37	19	57061509	57061509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZFP28	NM_020828	exon6	c.A761G	p.K254R	.	.	82	4	83	0	.	91
ZFP91	80829	bcgsc.ca	37	11	58381736	58381736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZFP91	NM_053023	exon9	c.A1022G	p.K341R	.	.	87	4	99	0	.	91
ZFYVE1	53349	bcgsc.ca	37	14	73460057	73460057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZFYVE1	NM_021260	exon4	c.T997C	p.S333P	.	.	72	4	44	0	.	91
ZFYVE28	57732	bcgsc.ca	37	4	2306466	2306466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZFYVE28	NM_020972	exon8	c.A1601G	p.Q534R	.	.	61	4	36	0	.	93
ZHX2	22882	bcgsc.ca	37	8	123964894	123964894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZHX2	NM_014943	exon3	c.A1144G	p.T382A	.	.	98	5	109	1	.	227
ZMPSTE24	10269	bcgsc.ca	37	1	40734109	40734109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZMPSTE24	NM_005857	exon4	c.T376C	p.F126L	.	.	120	5	122	0	.	226
ZMYM1	79830	bcgsc.ca	37	1	35579203	35579203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZMYM1	NM_024772	exon10	c.A1772G	p.E591G	.	.	140	5	170	0	.	90
ZMYM6	9204	bcgsc.ca	37	1	35485080	35485080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZMYM6	NM_007167	exon4	c.A302G	p.K101R	.	.	224	7	238	0	.	93
ZNF142	7701	bcgsc.ca	37	2	219508854	219508854	+	Silent	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF142	NM_001105537	exon8	c.C2385T	p.P795P	.	.	73	4	77	0	.	137
ZNF165	7718	bcgsc.ca	37	6	28053551	28053551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF165	NM_003447	exon2	c.T293C	p.L98P	.	.	79	4	60	0	.	90
ZNF165	7718	bcgsc.ca	37	6	28057006	28057006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF165	NM_003447	exon4	c.G1216A	p.G406R	.	.	72	4	97	0	.	90
ZNF182	7569	bcgsc.ca	37	X	47836034	47836034	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF182	NM_006962	exon7	c.A1452G	p.K484K	.	.	118	6	109	0	.	132
ZNF208	7757	bcgsc.ca	37	19	22156468	22156468	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF208	NM_007153	exon4	c.A1368G	p.E456E	.	.	182	6	131	0	.	7
ZNF229	7772	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934680	44934680	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF229	NM_014518	exon6	c.T276C	p.D92D	.	.	121	11	161	0	.	94
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20002465	20002465	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF253	NM_021047	exon4	c.A409T	p.T137S	.	.	163	27	236	0	.	90
ZNF257	113835	bcgsc.ca	37	19	22256280	22256280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF257	NM_033468	exon3	c.T140C	p.V47A	.	.	131	5	121	0	.	90
ZNF334	55713	bcgsc.ca	37	20	45131187	45131187	+	Missense_Mutation	SNP	G	G	A	rs183671301		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF334	NM_018102	exon5	c.C791T	p.P264L	.	.	110	5	89	0	G|0.999;A|0.000	92
ZNF345	25850	bcgsc.ca	37	19	37368540	37368540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF345	NM_001242476	exon4	c.G808A	p.G270R	.	.	81	4	100	1	.	91
ZNF407	55628	bcgsc.ca	37	18	72632640	72632640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF407	NM_017757	exon7	c.T5420C	p.L1807P	.	.	111	7	83	0	.	92
ZNF408	79797	hgsc.bcm.edu	37	11	46724728	46724728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF408	NM_024741	exon4	c.A587C	p.E196A	.	.	44	13	34	0	.	90
ZNF420	147923	bcgsc.ca	37	19	37619896	37619896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF420	NM_144689	exon5	c.A2003G	p.E668G	.	.	148	5	218	0	.	90
ZNF423	23090	bcgsc.ca	37	16	49671543	49671543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF423	NM_015069	exon4	c.A1520G	p.N507S	.	.	66	4	75	0	.	228
ZNF441	126068	bcgsc.ca	37	19	11892661	11892661	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF441	NM_152355	exon4	c.A2022G	p.K674K	.	.	73	4	72	0	.	69
ZNF449	203523	bcgsc.ca	37	X	134481330	134481330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF449	NM_152695	exon2	c.A287G	p.E96G	.	.	48	4	47	0	.	132
ZNF483	158399	bcgsc.ca	37	9	114304688	114304688	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF483	NM_133464	exon6	c.A1473G	p.G491G	.	.	93	5	116	0	.	91
ZNF525	170958	bcgsc.ca	37	19	53884551	53884551	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	.	.	.	125	5	183	2	.	.
ZNF566	84924	bcgsc.ca	37	19	36963860	36963860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF566	NM_001145343	exon4	c.A188G	p.K63R	.	.	107	5	105	0	.	90
ZNF692	55657	bcgsc.ca	37	1	249149829	249149829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF692	NM_001136036	exon8	c.G902A	p.G301E	.	.	93	4	87	0	.	90
ZNF765	91661	bcgsc.ca	37	19	53911858	53911858	+	Silent	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF765	NM_001040185	exon4	c.T1050C	p.T350T	.	.	94	4	98	0	.	69
ZNF777	27153	bcgsc.ca	37	7	149133741	149133741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF777	NM_015694	exon5	c.C1264A	p.L422M	.	.	71	4	68	0	.	136
ZNF778	197320	bcgsc.ca	37	16	89293163	89293163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001201407	exon7	c.A467G	p.E156G	.	.	92	4	101	0	.	.
ZNF814	730051	bcgsc.ca	37	19	58384331	58384331	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001144989	exon3	c.T2427C	p.F809F	.	.	188	6	209	1	.	.
ZNF833P	401898	bcgsc.ca	37	19	11796454	11796454	+	RNA	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF833P	.	.	.	.	.	.	90	4	113	0	.	91
ZNF841	284371	bcgsc.ca	37	19	52588052	52588052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	NM_001136499	exon4	c.G3A	p.M1I	.	.	173	6	224	1	.	.
ZNF860	344787	bcgsc.ca	37	3	32032161	32032161	+	Silent	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF860	NM_001137674	exon2	c.A1590G	p.R530R	.	.	125	5	128	0	.	1
ZNF92	168374	bcgsc.ca	37	7	64864292	64864292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZNF92	NM_152626	exon4	c.A1265G	p.E422G	.	.	59	4	60	0	.	514
ZRANB3	84083	bcgsc.ca	37	2	136071174	136071174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZRANB3	NM_032143	exon8	c.A851G	p.E284G	.	.	95	6	97	0	.	658
ZSCAN16	80345	bcgsc.ca	37	6	28094593	28094593	+	Silent	SNP	C	C	T	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZSCAN16	NM_025231	exon3	c.C420T	p.L140L	.	.	131	5	136	0	.	153
ZZEF1	23140	bcgsc.ca	37	17	3957422	3957422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	ZZEF1	NM_015113	exon34	c.A5363G	p.E1788G	.	.	87	4	110	0	.	93
AMER3	205147	broad.mit.edu;bcgsc.ca	37	2	131520956	131520957	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A1HT-01A-11D-A12Z-10	TCGA-CC-A1HT-10A-01D-A12Z-10	CC	CC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6b25a78f-20dc-4ccc-b4c0-f9885d16725d	0255f601-3be9-4059-9d36-7f666977eff0	.	.	.	.	.	p.SP437RT	.	.	.	.	.	.	.	
