Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19263896	19263896	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ABHD3	NM_138340	exon4	c.G540A	p.A180A	.	.	193	46	189	0	.	90
ACAN	176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89417182	89417182	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ACAN	NM_013227	exon17	c.C7443A	p.V2481V	.	.	95	9	107	0	.	25
ACAT2	39	bcgsc.ca	37	6	160198470	160198470	+	Silent	SNP	T	T	C	rs199859234	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ACAT2	NM_005891	exon7	c.T894C	p.I298I	.	.	108	19	171	5	T|0.983;C|0.016	91
ADAMTS18	170692	bcgsc.ca	37	16	77401381	77401381	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ADAMTS18	NM_199355	exon4	c.T735C	p.H245H	.	.	77	4	150	0	.	1036
ADCYAP1R1	117	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31104532	31104532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ADCYAP1R1	NM_001118	exon3	c.G137T	p.G46V	.	.	49	5	99	0	.	91
AMPD1	270	broad.mit.edu;bcgsc.ca	37	1	115229460	115229460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	AMPD1	NM_000036	exon4	c.T386G	p.L129R	.	.	185	7	224	0	.	293
ANK2	287	broad.mit.edu	37	4	114238954	114238954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ANK2	NM_001148	exon25	c.C2785T	p.P929S	.	.	163	4	252	0	.	583
ANKIB1	54467	bcgsc.ca	37	7	92019310	92019310	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ANKIB1	NM_019004	exon15	c.T1932C	p.T644T	.	.	56	4	117	0	.	432
ARFGEF1	10565	broad.mit.edu;bcgsc.ca	37	8	68184028	68184028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARFGEF1	NM_006421	exon10	c.T1481C	p.V494A	.	.	142	6	111	0	.	294
ARHGAP23	57636	bcgsc.ca	37	17	36654048	36654048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARHGAP23	NM_001199417	exon21	c.G3298A	p.E1100K	.	.	365	13	445	4	.	205
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	142435642	142435642	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ARHGAP26	NM_015071	exon16	c.A1423T	p.K475X	.	.	51	8	59	0	.	660
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152835147	152835147	+	Silent	SNP	C	C	T	rs147874519	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP2B3	NM_021949	exon20	c.C3429T	p.D1143D	.	.	191	41	135	0	C|1.000;T|0.000	109
ATP6V0A4	50617	bcgsc.ca	37	7	138444510	138444510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP6V0A4	NM_130841	exon7	c.A626G	p.E209G	.	.	69	4	105	0	.	91
ATP6V0D2	245972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87165053	87165053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ATP6V0D2	NM_152565	exon8	c.G900T	p.M300I	.	.	64	21	84	0	.	90
BDNF	627	ucsc.edu;mdanderson.org	37	11	27681097	27681097	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BDNF	.	.	.	.	.	.	259	78	237	0	.	514
BRAF	673	bcgsc.ca	37	7	140549974	140549974	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BRAF	NM_004333	exon2	c.A177G	p.E59E	.	.	85	4	56	0	.	92146
BRF1	2972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105693005	105693005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BRF1	NM_001519	exon8	c.A881G	p.Y294C	.	.	102	29	88	1	.	155
BTBD11	121551	bcgsc.ca	37	12	108006640	108006640	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	BTBD11	NM_001018072	exon6	c.T1893C	p.N631N	.	.	63	4	71	0	.	93
C10orf90	118611	bcgsc.ca	37	10	128114605	128114605	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C10orf90	NM_001004298	exon8	c.G2016A	p.R672R	.	.	115	5	119	0	.	92
C11orf87	399947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	109294862	109294862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C11orf87	NM_207645	exon2	c.C503A	p.P168Q	.	.	64	19	71	0	.	92
C12orf29	91298	bcgsc.ca	37	12	88429468	88429468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C12orf29	NM_001009894	exon1	c.T43C	p.F15L	.	.	60	4	92	0	.	90
C14orf166B	145497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77311222	77311222	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_194287	exon7	c.G705A	p.G235G	.	.	51	17	67	0	.	.
C17orf104	284071	bcgsc.ca	37	17	42745526	42745526	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C17orf104	NM_001145080	exon5	c.A2247C	p.G749G	.	.	127	32	156	6	.	22
C1orf101	257044	bcgsc.ca	37	1	244769056	244769056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C1orf101	NM_173807	exon18	c.A2363G	p.H788R	.	.	122	5	92	0	.	154
C1orf220	400798	bcgsc.ca	37	1	178514114	178514114	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C1orf220	.	.	.	.	.	.	102	5	122	0	.	68
C2CD4C	126567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	407975	407975	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C2CD4C	NM_001136263	exon2	c.C387T	p.D129D	.	.	125	27	121	0	.	46
C2orf66	401027	bcgsc.ca	37	2	197674082	197674082	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C2orf66	NM_213608	exon1	c.T30C	p.S10S	.	.	126	5	152	1	.	68
C6orf118	168090	bcgsc.ca	37	6	165712930	165712930	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	C6orf118	NM_144980	exon5	c.936+2T>C	.	.	.	80	4	99	0	.	90
CAMTA1	23261	ucsc.edu;bcgsc.ca	37	1	6880251	6880251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CAMTA1	NM_015215	exon2	c.A56G	p.Q19R	.	.	47	5	70	0	.	520
CBLL1	79872	bcgsc.ca	37	7	107395902	107395902	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CBLL1	NM_024814	exon5	c.T406C	p.L136L	.	.	93	4	127	0	.	229
CCDC112	153733	bcgsc.ca	37	5	114611768	114611768	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CCDC112	NM_001040440	exon6	c.452-2A>G	.	.	.	64	4	140	0	.	90
CCDC168	643677	ucsc.edu	37	13	103390171	103390171	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001146197	exon4	c.A12876G	p.Q4292Q	.	.	32	4	139	0	.	.
CCDC173	129881	bcgsc.ca	37	2	170502682	170502682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001085447	exon9	c.A1328G	p.K443R	.	.	92	4	114	0	.	.
CCDC39	339829	bcgsc.ca	37	3	180366028	180366028	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CCDC39	NM_181426	exon10	c.T1287C	p.S429S	.	.	87	4	110	0	.	72
CDC23	8697	ucsc.edu	37	5	137525410	137525410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDC23	NM_004661	exon15	c.C1535A	p.A512D	.	.	170	3	209	0	.	226
CDC25B	994	bcgsc.ca	37	20	3783606	3783606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDC25B	NM_021873	exon12	c.T1244C	p.I415T	.	.	206	6	218	0	.	849
CDC45	8318	hgsc.bcm.edu	37	22	19492928	19492929	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDC45	NM_001178010	exon11	c.844_845insC	p.S282fs	.	.	130	10	125	0	.	227
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65038624	65038624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDH11	NM_001797	exon3	c.G149A	p.R50H	.	.	95	19	109	0	.	852
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65038770	65038770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CDH11	NM_001797	exon3	c.G3T	p.M1I	.	.	133	31	178	0	.	852
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243291604	243291604	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP170	NM_001042405	exon19	c.4042-2A>T	.	.	.	270	34	420	1	.	93
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243328135	243328135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP170	NM_014812	exon13	c.G3127A	p.D1043N	.	.	328	26	446	1	.	93
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13049219	13049219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CEP192	NM_032142	exon16	c.A2429T	p.D810V	.	.	80	11	72	0	.	27
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	117243675	117243675	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CFTR	NM_000492	exon17	c.T2747A	p.F916Y	.	.	118	11	243	0	.	518
CHRNB2	1141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154543762	154543762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRNB2	NM_000748	exon5	c.T463C	p.C155R	.	.	88	11	101	0	.	90
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42587427	42587427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRNB3	NM_000749	exon5	c.C977T	p.S326F	.	.	438	176	300	0	.	91
CHRND	1144	bcgsc.ca	37	2	233396287	233396287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CHRND	NM_000751	exon9	c.T968C	p.V323A	.	.	96	5	164	0	.	155
CILP	8483	bcgsc.ca	37	15	65495724	65495724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CILP	NM_003613	exon7	c.A1004G	p.K335R	.	.	113	6	97	0	.	97
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87755800	87755800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNGB3	NM_019098	exon1	c.A56T	p.E19V	.	.	285	120	397	0	.	93
CNN3	1266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	95364951	95364951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNN3	NM_001839	exon6	c.G624A	p.M208I	.	.	67	15	128	0	.	90
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125555776	125555776	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNTNAP5	NM_130773	exon19	c.A3093T	p.T1031T	.	.	199	53	243	0	.	524
CNTRL	11064	bcgsc.ca	37	9	123937466	123937466	+	Silent	SNP	T	T	C	rs146837361	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CNTRL	NM_007018	exon41	c.T6918C	p.S2306S	.	.	52	4	75	0	T|0.999;C|0.001	661
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32158742	32158742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	COL16A1	NM_001856	exon13	c.A1022T	p.E341V	.	.	113	18	125	0	.	98
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94057038	94057038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	COL1A2	NM_000089	exon49	c.C3367A	p.R1123S	.	.	87	26	123	0	.	521
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75932132	75932132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CRISPLD1	NM_031461	exon11	c.A1155G	p.T385T	.	.	165	56	211	0	.	91
CSDAP1	440359	bcgsc.ca	37	16	31580530	31580530	+	RNA	SNP	A	A	G	rs4889548	byfrequency;alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	.	.	.	.	.	.	80	4	62	0	A|0.696;C|0.304	.
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2799992	2799992	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD1	NM_033225	exon70	c.10535+2T>G	.	.	.	41	23	51	0	.	86
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3443701	3443701	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD1	NM_033225	exon9	c.A1179G	p.T393T	.	.	75	21	79	0	.	86
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34498286	34498286	+	Silent	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CSMD2	NM_052896	exon3	c.A306C	p.P102P	.	.	93	12	83	0	.	103
CTTNBP2	83992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117432446	117432446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CTTNBP2	NM_033427	exon4	c.A804C	p.Q268H	.	.	267	41	276	1	.	94
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117432538	117432538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CTTNBP2	NM_033427	exon4	c.C712T	p.R238W	.	.	232	28	232	0	.	94
CYTH1	9267	broad.mit.edu;bcgsc.ca	37	17	76698670	76698670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	CYTH1	NM_017456	exon4	c.A187G	p.N63D	.	.	146	6	136	0	.	228
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	124535287	124535287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DAB2IP	NM_032552	exon12	c.C2396G	p.S799C	.	.	98	28	148	0	.	91
DBF4	10926	broad.mit.edu	37	7	87536880	87536880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DBF4	NM_006716	exon12	c.A1427G	p.E476G	.	.	122	4	150	0	.	253
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	51025767	51025767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DCC	NM_005215	exon27	c.C3998T	p.T1333I	.	.	84	9	171	0	.	225
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114454510	114454510	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DCLRE1B	NM_022836	exon4	c.A1296G	p.S432S	.	.	102	18	117	0	.	227
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162688873	162688873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DDR2	NM_001014796	exon4	c.T20C	p.M7T	.	.	64	15	118	0	.	1464
DIAPH3	81624	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	60413570	60413570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DIAPH3	NM_001042517	exon23	c.C2750T	p.T917M	.	.	15	3	63	0	.	516
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124377713	124377713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DMBT1	NM_007329	exon38	c.C4685A	p.A1562D	.	.	66	20	100	0	.	494
DNAAF2	55172	bcgsc.ca	37	14	50100404	50100404	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_018139	exon1	c.A1464G	p.G488G	.	.	122	5	128	0	.	.
DNAAF3	352909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55670500	55670500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001256714	exon12	c.A1757G	p.E586G	.	.	133	31	168	0	.	.
DNAH12	201625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57431862	57431862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DNAH12	NM_178504	exon27	c.T4006G	p.F1336V	.	.	182	43	214	1	.	47
DNAH7	56171	bcgsc.ca	37	2	196753534	196753534	+	Missense_Mutation	SNP	A	A	G	rs201348121		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DNAH7	NM_018897	exon32	c.T5218C	p.S1740P	.	.	180	37	239	8	.	102
DPYD	1806	bcgsc.ca	37	1	97847977	97847977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DPYD	NM_000110	exon15	c.A1946G	p.D649G	.	.	60	5	127	1	.	278
DSCR3	10311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38597864	38597864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DSCR3	NM_006052	exon8	c.T875A	p.L292Q	.	.	106	20	120	0	.	90
DST	667	bcgsc.ca	37	6	56391251	56391251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DST	NM_015548	exon50	c.G10168A	p.V3390I	.	.	80	4	185	0	.	523
DTX3L	151636	bcgsc.ca	37	3	122287815	122287815	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DTX3L	NM_138287	exon3	c.T879C	p.S293S	.	.	80	4	71	0	.	587
DUOX2	50506	broad.mit.edu;bcgsc.ca	37	15	45393403	45393403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DUOX2	NM_014080	exon22	c.G2921A	p.R974H	.	.	105	7	133	1	.	95
DYNC2H1	79659	bcgsc.ca	37	11	103126185	103126185	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	DYNC2H1	NM_001080463	exon68	c.A10269G	p.E3423E	.	.	71	4	124	0	.	68
EIF2AK3	9451	bcgsc.ca	37	2	88882998	88882998	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EIF2AK3	NM_004836	exon10	c.A1713G	p.E571E	.	.	67	4	70	0	.	361
EML4	27436	bcgsc.ca	37	2	42557166	42557166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EML4	NM_019063	exon23	c.T2765C	p.L922P	.	.	52	4	43	0	.	3734
EPB41L4A	64097	bcgsc.ca	37	5	111519821	111519821	+	Missense_Mutation	SNP	T	T	C	rs76446234	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EPB41L4A	NM_022140	exon18	c.A1514G	p.E505G	.	.	146	35	186	4	T|0.993;C|0.007	91
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111600669	111600669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EPB41L4A	NM_022140	exon6	c.G478T	p.V160L	.	.	85	13	75	0	.	91
EPHA2	1969	broad.mit.edu	37	1	16456775	16456775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EPHA2	NM_004431	exon15	c.A2615G	p.D872G	.	.	295	7	304	2	.	1419
ERAP1	51752	bcgsc.ca	37	5	96130798	96130798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ERAP1	NM_001198541	exon5	c.T866C	p.L289P	.	.	69	4	88	0	.	70
ERBB2IP	55914	bcgsc.ca	37	5	65349403	65349403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ERBB2IP	NM_001253699	exon21	c.A2257G	p.T753A	.	.	110	5	154	0	.	653
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45924624	45924624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ERCC1	NM_001983	exon3	c.A133G	p.S45G	.	.	74	10	74	0	.	659
ERO1LB	56605	broad.mit.edu	37	1	236399588	236399588	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ERO1LB	NM_019891	exon7	c.A616T	p.N206Y	.	.	89	5	110	0	.	90
ESF1	51575	bcgsc.ca	37	20	13699561	13699561	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ESF1	NM_001276380	exon12	c.A2109G	p.R703R	.	.	103	4	92	0	.	91
EXO5	64789	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40980542	40980542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_022774	exon3	c.A326G	p.E109G	.	.	58	6	73	0	.	.
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	464493	464493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	EXOC3	NM_007277	exon10	c.A1742G	p.N581S	.	.	74	7	85	0	.	90
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	.	.	.	.	.	.	155	6	92	1	.	.
FAM98C	147965	hgsc.bcm.edu	37	19	38894270	38894270	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FAM98C	NM_174905	exon3	c.C285T	p.R95R	.	.	6	5	0	0	.	91
FBLN1	2192	ucsc.edu	37	22	45929666	45929666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FBLN1	NM_006487	exon7	c.C672A	p.S224R	.	.	51	2	63	0	.	515
FBN2	2201	bcgsc.ca	37	5	127638711	127638711	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FBN2	NM_001999	exon46	c.T5871C	p.C1957C	.	.	55	4	56	0	.	146
FGG	2266	ucsc.edu	37	4	155533211	155533211	+	Missense_Mutation	SNP	G	G	A	rs11551849		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FGG	NM_000509	exon3	c.C266T	p.A89V	.	.	37	4	116	0	G|1.000;|0.000	90
FMNL1	752	broad.mit.edu	37	17	43322713	43322713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FMNL1	NM_005892	exon22	c.T2822C	p.V941A	.	.	121	5	156	1	.	91
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109273448	109273448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FNDC7	NM_001144937	exon9	c.C1777T	p.L593F	.	.	98	18	106	0	.	92
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94040391	94040391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOLR4	NM_001199206	exon3	c.G409A	p.E137K	.	.	112	12	162	0	.	23
FOXL1	2300	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612389	86612389	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOXL1	NM_005250	exon1	c.G60C	p.L20L	.	.	96	11	115	0	.	227
FOXRED2	80020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36892113	36892113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FOXRED2	NM_001102371	exon7	c.G1525T	p.D509Y	.	.	126	16	166	1	.	92
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249985	52249985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	FPR1	NM_001193306	exon3	c.G263T	p.G88V	.	.	183	35	204	0	.	524
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51759243	51759243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GALNT6	NM_007210	exon5	c.C785G	p.A262G	.	.	92	10	116	4	.	92
GALR1	2587	broad.mit.edu;mdanderson.org	37	18	74962595	74962595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GALR1	NM_001480	exon1	c.G91A	p.V31M	.	.	40	7	44	0	.	522
GARNL3	84253	bcgsc.ca	37	9	130147393	130147393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GARNL3	NM_032293	exon24	c.T2357C	p.V786A	.	.	119	6	141	1	.	516
GARS	2617	bcgsc.ca	37	7	30671124	30671124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GARS	NM_002047	exon15	c.A1870G	p.N624D	.	.	64	4	90	0	.	91
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413759	48413759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GDF2	NM_016204	exon2	c.C1109T	p.P370L	.	.	141	18	162	0	.	229
GLG1	2734	ucsc.edu;bcgsc.ca	37	16	74496078	74496078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GLG1	NM_001145667	exon22	c.T2950C	p.C984R	.	.	40	4	55	0	.	136
GLTSCR2	29997	broad.mit.edu;bcgsc.ca	37	19	48257974	48257974	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GLTSCR2	NM_015710	exon8	c.A879G	p.T293T	.	.	97	7	94	0	.	514
GOLGA3	2802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133384623	133384623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GOLGA3	NM_001172557	exon5	c.G1032T	p.M344I	.	.	103	30	124	0	.	95
GPATCH4	54865	bcgsc.ca	37	1	156565494	156565494	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPATCH4	NM_015590	exon8	c.A639G	p.K213K	.	.	80	4	54	0	.	91
GPATCH8	23131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42475028	42475028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPATCH8	NM_001002909	exon8	c.G4417T	p.A1473S	.	.	152	30	225	1	.	94
GPR128	84873	hgsc.bcm.edu	37	3	100354665	100354810	+	In_Frame_Del	DEL	CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG	CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG	-	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG	CCTGAGGTAAAACTCACAGAGCTTTAAAAAAAATTTTTTTTTTATTTTTAGAGGGGGTGTTGGGAAAGAAAGAGAGATGTCCTGAATACCACTCCTTATTCCACAATATGGTTTGAGCATGGTTTAAGTTGCTTAAAGGCATTTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPR128	NM_032787	exon5	c.592_597del	p.198_199del	.	.	65	0	89	0	.	94
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25861801	25861801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GPR158	NM_020752	exon7	c.T1738A	p.Y580N	.	.	102	17	201	0	.	141
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125821443	125821443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GRAMD3	NM_001146319	exon11	c.A1081G	p.I361V	.	.	39	6	52	0	.	90
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	34029743	34029743	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	GRM4	NM_001256811	exon4	c.A799T	p.K267X	.	.	170	55	214	0	.	525
GTF2IRD2P1	401375	bcgsc.ca	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	.	.	.	.	.	.	44	7	43	1	.	.
HCCS	3052	bcgsc.ca	37	X	11135392	11135392	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HCCS	NM_001122608	exon4	c.A258G	p.P86P	.	.	87	4	77	0	.	226
HDAC2	3066	bcgsc.ca	37	6	114277819	114277819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HDAC2	NM_001527	exon4	c.T322C	p.F108L	.	.	101	4	157	0	.	660
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121432040	121432040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	HNF1A,NS,other,0	HNF1A	NM_000545	exon4	c.C787G	p.R263G	.	.	61	5	111	0	.	1745
HNRNPCL1	343069	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12907411	12907411	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HNRNPCL1	NM_001013631	exon2	c.A732G	p.A244A	.	.	198	15	316	1	.	68
HNRNPD	3184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83278019	83278020	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HNRNPD	NM_002138	exon6	c.783_784insG	p.E261fs	.	.	132	23	175	0	.	22
HSD3B2	3284	bcgsc.ca	37	1	119964679	119964679	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSD3B2	NM_001166120	exon4	c.A555G	p.R185R	.	.	69	5	118	1	.	92
HSPA12A	259217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118458224	118458224	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSPA12A	NM_025015	exon5	c.G468T	p.T156T	.	.	89	28	124	0	.	206
HSPA4	3308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132400692	132400692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	HSPA4	NM_002154	exon2	c.C128T	p.P43L	.	.	209	32	183	0	.	226
IFT74	80173	bcgsc.ca	37	9	26984330	26984330	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	IFT74	NM_001099222	exon5	c.A381G	p.S127S	.	.	75	4	76	0	.	515
IGLL1	3543	broad.mit.edu	37	22	23915748	23915748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	IGLL1	NM_020070	exon3	c.T347C	p.V116A	.	.	235	10	233	3	.	90
INADL	10207	broad.mit.edu;bcgsc.ca	37	1	62299423	62299423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	INADL	NM_176877	exon17	c.G2078A	p.C693Y	.	.	184	7	209	0	.	94
INSIG2	51141	bcgsc.ca	37	2	118854306	118854306	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	INSIG2	NM_016133	exon2	c.T174C	p.F58F	.	.	89	4	92	0	.	91
INSR	3643	bcgsc.ca	37	19	7119593	7119593	+	Missense_Mutation	SNP	A	A	C	rs201979105	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	INSR	NM_000208	exon21	c.T3661G	p.S1221A	.	.	95	41	128	16	A|0.975;C|0.025	1381
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1529320	1529320	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001080453	exon18	c.2166-2A>T	.	.	.	65	9	79	0	.	.
IRS2	8660	broad.mit.edu	37	13	110434878	110434878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	IRS2,NS,carcinoma,0	IRS2	NM_003749	exon1	c.G3523T	p.A1175S	.	.	50	5	72	1	.	1334
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128247424	128247424	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	IWS1	NM_017969	exon11	c.C2143T	p.R715X	.	.	267	41	348	0	.	91
JAKMIP2	9832	bcgsc.ca	37	5	147023672	147023672	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	JAKMIP2	NM_001270941	exon7	c.T1173C	p.F391F	.	.	88	4	188	0	.	154
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	139791731	139791731	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	JHDM1D	NM_030647	exon19	c.G2604A	p.A868A	.	.	181	9	201	0	.	91
KAT6A	7994	bcgsc.ca	37	8	41806819	41806819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001099412	exon11	c.A1661G	p.Q554R	.	.	47	4	48	0	.	.
KCNA7	3743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49574011	49574011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KCNA7	NM_031886	exon2	c.G680T	p.R227L	.	.	67	20	83	0	.	90
KCNQ4	9132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41304173	41304173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KCNQ4	NM_004700	exon14	c.C2066T	p.S689L	.	.	313	32	321	2	.	90
KDR	3791	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55946222	55946222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KDR	NM_002253	exon30	c.C3957A	p.Y1319X	.	.	162	51	206	1	.	2298
KIAA0922	23240	broad.mit.edu;bcgsc.ca	37	4	154557488	154557488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA0922	NM_001131007	exon35	c.G4593A	p.M1531I	.	.	105	6	123	0	.	92
KIAA1109	84162	bcgsc.ca	37	4	123254827	123254827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA1109	NM_015312	exon66	c.T11509C	p.S3837P	.	.	64	4	286	0	.	80
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34646878	34646878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIAA1328	NM_020776	exon7	c.A602G	p.Q201R	.	.	142	33	166	0	.	90
KIF11	3832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94369152	94369152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF11	NM_004523	exon6	c.T584C	p.I195T	.	.	60	9	91	0	.	227
KIF20B	9585	bcgsc.ca	37	10	91487619	91487619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF20B	NM_016195	exon17	c.A2117G	p.D706G	.	.	74	4	79	0	.	93
KIF22	3835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29811026	29811026	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF22	NM_007317	exon7	c.C1068T	p.V356V	.	.	124	22	225	0	.	68
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	104642658	104642658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KIF26A	NM_015656	exon12	c.G3533T	p.G1178V	.	.	107	34	83	0	.	24
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45853937	45853937	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KLC3	NM_177417	exon11	c.G1311A	p.E437E	.	.	159	37	184	0	.	91
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KRTAP10-6	NM_198688	exon1	c.C966T	p.S322S	.	.	269	5	300	1	.	90
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	134	31	153	1	T|0.717;C|0.283	91
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	7023225	7023225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LAMA1	NM_005559	exon19	c.C2639A	p.A880D	.	.	119	10	122	0	.	149
LAMTOR3	8649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100808468	100808468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LAMTOR3	NM_021970	exon4	c.G88T	p.V30L	.	.	143	42	214	0	.	658
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	113901064	113901064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LHX5	NM_022363	exon5	c.C1140A	p.S380R	.	.	34	14	20	0	.	90
LMTK2	22853	broad.mit.edu;bcgsc.ca	37	7	97822981	97822981	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LMTK2	NM_014916	exon11	c.T3204C	p.P1068P	.	.	61	5	62	0	.	1381
LOC286238	0	bcgsc.ca	37	9	91262352	91262352	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001100111	exon2	c.T291C	p.H97H	.	.	77	4	117	0	.	.
LRRC71	149499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156901780	156901780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LRRC71	NM_144702	exon13	c.A1402G	p.M468V	.	.	187	16	210	0	.	91
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	102113247	102113247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LRWD1	NM_152892	exon14	c.C1799T	p.T600I	.	.	141	6	110	0	.	69
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969676	43969676	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LYPD3	NM_014400	exon1	c.A48T	p.A16A	.	.	56	12	64	0	.	91
LYPLAL1	127018	bcgsc.ca	37	1	219352499	219352499	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	LYPLAL1	NM_138794	exon2	c.A102G	p.G34G	.	.	99	5	188	0	.	157
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291370	141291370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAGEC2	NM_016249	exon3	c.C404T	p.S135F	.	.	35	16	38	0	.	193
MAGI1	9223	bcgsc.ca	37	3	65425591	65425591	+	Silent	SNP	T	T	C	rs79701778	bycluster;byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAGI1	NM_001033057	exon9	c.A1233G	p.Q411Q	.	.	65	19	103	24	T|0.983;C|0.017	661
MAGI1	9223	bcgsc.ca	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAGI1	NM_001033057	exon9	c.G1230A	p.Q410Q	.	.	69	7	109	11	.	661
MAN2A2	4122	broad.mit.edu	37	15	91448927	91448927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAN2A2	NM_006122	exon3	c.T509C	p.V170A	.	.	202	6	236	0	.	136
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71491475	71491475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAP1B	NM_005909	exon5	c.T2293C	p.S765P	.	.	82	12	116	0	.	155
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135314089	135314089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAP7D3	NM_024597	exon8	c.G1027C	p.V343L	.	.	101	55	114	0	.	110
MAPK9	5601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179674507	179674507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MAPK9	NM_002752	exon7	c.A620C	p.D207A	.	.	48	5	64	0	.	1402
MATN2	4147	bcgsc.ca	37	8	99033553	99033553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MATN2	NM_002380	exon13	c.A1940G	p.K647R	.	.	96	4	111	0	.	24
MATN4	8785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43933399	43933399	+	Missense_Mutation	SNP	C	C	T	rs114313957	byfrequency;alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MATN4	NM_030592	exon3	c.G112A	p.V38M	.	.	116	28	88	0	C|0.987;G|0.013	90
MCM3	4172	bcgsc.ca	37	6	52129526	52129526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MCM3	NM_002388	exon17	c.A2422G	p.I808V	.	.	77	5	96	0	.	228
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3425655	3425655	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MEGF6	NM_001409	exon12	c.G1512A	p.T504T	.	.	138	41	114	0	.	90
MFSD4	148808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	205568282	205568282	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MFSD4	NM_181644	exon9	c.T1392C	p.Y464Y	.	.	317	73	369	0	.	92
MGA	23269	bcgsc.ca	37	15	42028752	42028752	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MGA	NM_001080541	exon13	c.T4290C	p.S1430S	.	.	202	6	157	1	.	522
MGLL	11343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	127413989	127413989	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MGLL	NM_007283	exon7	c.G645A	p.L215L	.	.	165	36	232	0	.	90
MIPEP	4285	broad.mit.edu;bcgsc.ca	37	13	24384001	24384001	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MIPEP	NM_005932	exon15	c.T1716C	p.D572D	.	.	66	6	57	0	.	90
MIS18BP1	55320	bcgsc.ca	37	14	45693879	45693879	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MIS18BP1	NM_018353	exon11	c.A1911G	p.E637E	.	.	140	6	122	0	.	90
MLKL	197259	bcgsc.ca	37	16	74729349	74729349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MLKL	NM_152649	exon2	c.A307G	p.R103G	.	.	153	5	187	0	.	561
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151970873	151970873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MLL3	NM_170606	exon7	c.G929T	p.C310F	.	.	394	18	472	0	.	1398
MLL5	55904	bcgsc.ca	37	7	104751300	104751300	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MLL5	NM_018682	exon25	c.T4053C	p.P1351P	.	.	138	5	137	0	.	93
MMAA	166785	broad.mit.edu;bcgsc.ca	37	4	146575235	146575235	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MMAA	NM_172250	exon6	c.A909G	p.Q303Q	.	.	110	6	121	0	.	91
MPV17L	255027	bcgsc.ca	37	16	15490019	15490019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MPV17L	NM_001128423	exon1	c.G265A	p.D89N	.	.	51	4	49	0	.	90
MRGPRX1	259249	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18955787	18955787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MRGPRX1	NM_147199	exon1	c.C545T	p.A182V	.	.	79	11	92	1	.	92
MTFR2	113115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136562631	136562631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_138419	exon5	c.G465C	p.Q155H	.	.	149	10	155	0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9011461	9011461	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	ENSG00000232861,NS,carcinoma,-2	MUC16	NM_024690	exon36	c.T38772C	p.D12924D	.	.	154	12	241	0	.	566
MUC4	4585	broad.mit.edu	37	3	195508982	195508982	+	Missense_Mutation	SNP	C	C	T	rs79543693	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MUC4	NM_018406	exon2	c.G9469A	p.D3157N	.	.	99	6	123	1	C|0.625;T|0.375	90
MUSK	4593	bcgsc.ca	37	9	113444963	113444963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MUSK	NM_001166281	exon2	c.T89C	p.I30T	.	.	67	4	150	0	.	1379
MYBPC2	4606	bcgsc.ca	37	19	50958840	50958840	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYBPC2	NM_004533	exon20	c.T2277C	p.P759P	.	.	95	6	114	0	.	67
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10432947	10432947	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYH2	NM_017534	exon24	c.G3051A	p.Q1017Q	.	.	362	166	335	0	.	194
MYO1B	4430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192160940	192160940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYO1B	NM_012223	exon3	c.T239G	p.L80R	.	.	82	21	101	1	.	238
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171259467	171259467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	MYO3B	NM_001083615	exon19	c.C2239G	p.Q747E	.	.	102	16	126	0	.	530
NBAS	51594	bcgsc.ca	37	2	15601348	15601348	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NBAS	NM_015909	exon21	c.T2316C	p.Y772Y	.	.	56	4	95	0	.	94
NBEAL1	65065	broad.mit.edu;bcgsc.ca	37	2	203991638	203991638	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NBEAL1	NM_001114132	exon22	c.G3150A	p.R1050R	.	.	192	7	159	0	.	92
NCKAP1	10787	bcgsc.ca	37	2	183817134	183817134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NCKAP1	NM_205842	exon24	c.A2618G	p.K873R	.	.	160	5	153	0	.	92
NCOA6	23054	broad.mit.edu;bcgsc.ca	37	20	33329636	33329636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NCOA6	NM_014071	exon11	c.A4424G	p.E1475G	.	.	172	6	130	0	.	292
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2610833	2610833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NDC80	NM_006101	exon16	c.G1764A	p.M588I	.	.	174	22	213	0	.	91
NIPBL	25836	bcgsc.ca	37	5	37016151	37016151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NIPBL	NM_015384	exon23	c.A4655G	p.K1552R	.	.	81	4	90	0	.	293
NME7	29922	bcgsc.ca	37	1	169267890	169267890	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NME7	NM_013330	exon6	c.A552G	p.A184A	.	.	44	4	138	0	.	514
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150708074	150708074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NOS3	NM_000603	exon23	c.G2984C	p.G995A	.	.	48	10	78	0	.	1011
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	79269978	79269978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NRXN3	NM_004796	exon6	c.G941A	p.S314N	.	.	107	27	130	0	.	587
NSRP1	84081	broad.mit.edu	37	17	28512443	28512443	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NSRP1	NM_032141	exon7	c.A1428G	p.R476R	.	.	167	5	75	0	.	91
NSRP1	84081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	28511699	28511699	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NSRP1	NM_032141	exon7	c.A684G	p.P228P	.	.	280	15	145	0	.	91
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13383318	13383318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NUP210	NM_024923	exon23	c.A3158T	p.Q1053L	.	.	193	57	217	0	.	256
NUP214	8021	bcgsc.ca	37	9	134073044	134073044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NUP214	NM_005085	exon29	c.T4163C	p.V1388A	.	.	106	5	131	0	.	1131
NUP93	9688	ucsc.edu	37	16	56782200	56782200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	NUP93	NM_014669	exon2	c.A41G	p.E14G	.	.	38	4	49	0	.	205
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228461239	228461239	+	Missense_Mutation	SNP	C	C	A	rs189809636	byfrequency;alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OBSCN	NM_001271223	exon21	c.C6253A	p.H2085N	.	.	156	21	224	0	C|0.995;T|0.005	403
ODAM	54959	bcgsc.ca	37	4	71066295	71066295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ODAM	NM_017855	exon6	c.A505G	p.R169G	.	.	15	3	93	0	.	134
OR2T2	401992	bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	rs199823862		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	TGCTGCG	TGCTGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OR2T2	NM_001004136	exon1	c.607_613del	p.203_205del	.	.	320	0	566	3	.	23
OR3A3	8392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	3324438	3324438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OR3A3	NM_012373	exon1	c.C577T	p.L193F	.	.	311	12	262	0	.	68
OR5D18	219438	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587762	55587762	+	Silent	SNP	T	T	C	rs116682108	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OR5D18	NM_001001952	exon1	c.T657C	p.Y219Y	.	.	166	24	219	0	T|0.997;C|0.003	71
OR6C70	390327	bcgsc.ca	37	12	55863282	55863282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OR6C70	NM_001005499	exon1	c.T641C	p.L214P	.	.	54	4	105	0	.	69
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45885990	45885990	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	OSBPL7	NM_145798	exon22	c.C2334T	p.A778A	.	.	237	33	305	0	.	68
PALB2	79728	bcgsc.ca	37	16	23647574	23647574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PALB2	NM_024675	exon4	c.T293C	p.I98T	.	.	92	4	99	0	.	1351
PARD3	56288	broad.mit.edu;bcgsc.ca	37	10	34690758	34690758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PARD3	NM_001184788	exon6	c.C802G	p.L268V	.	.	50	5	78	0	.	92
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4966401	4966401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_032972	exon2	c.G782C	p.R261T	.	.	162	21	284	0	.	.
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568668	55568668	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH15	.	.	.	.	.	.	212	51	261	0	.	193
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99551540	99551540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH19	NM_001184880	exon6	c.C3182A	p.A1061E	.	.	46	22	65	0	.	110
PCDH9	5101	broad.mit.edu	37	13	67205348	67205348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDH9	NM_203487	exon4	c.A3334G	p.N1112D	.	.	19	3	61	0	.	96
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140798233	140798233	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PCDHGB7	NM_018927	exon1	c.G807A	p.Q269Q	.	.	41	5	37	0	.	29
PDCD1LG2	80380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5549465	5549465	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDCD1LG2	NM_025239	exon4	c.C492A	p.T164T	.	.	74	22	164	1	.	227
PDCD6	10016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	306821	306821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDCD6	NM_013232	exon4	c.G313C	p.D105H	.	.	220	30	184	0	.	290
PDE7A	5150	bcgsc.ca	37	8	66631591	66631591	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDE7A	NM_001242318	exon13	c.T1383C	p.S461S	.	.	128	5	145	0	.	90
PDGFRA	5156	bcgsc.ca	37	4	55153630	55153630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PDGFRA	NM_006206	exon19	c.A2596G	p.S866G	.	.	213	6	275	0	.	9497
PGM5	5239	bcgsc.ca	37	9	71144540	71144540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PGM5	NM_021965	exon11	c.A1672G	p.T558A	.	.	76	4	112	0	.	92
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34515736	34515736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PHF20	NM_016436	exon14	c.G2039T	p.C680F	.	.	139	50	120	0	.	515
PHKA2	5256	broad.mit.edu	37	X	18972407	18972407	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PHKA2	NM_000292	exon2	c.G202C	p.D68H	.	.	80	3	61	0	.	131
PHLPP1	23239	bcgsc.ca	37	18	60563031	60563031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_194449	exon6	c.T2231C	p.L744S	.	.	85	4	81	0	.	.
PIN4P1	728758	ucsc.edu	37	15	44168383	44168383	+	RNA	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	.	.	.	.	.	.	259	78	234	0	.	.
PKD1L3	342372	bcgsc.ca	37	16	72018059	72018059	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PKD1L3	.	.	.	.	.	.	69	4	59	0	.	68
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	82357106	82357106	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PMP2	NM_002677	exon2	c.C192G	p.S64S	.	.	104	13	117	0	.	90
PMS1	5378	bcgsc.ca	37	2	190719743	190719743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PMS1	NM_001128144	exon9	c.T1745C	p.V582A	.	.	72	4	129	0	.	1396
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121179064	121179064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	POLQ	NM_199420	exon25	c.G6985T	p.A2329S	.	.	155	24	159	0	.	664
PRKCB	5579	bcgsc.ca	37	16	24124318	24124318	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRKCB	NM_212535	exon8	c.A846G	p.E282E	.	.	59	4	76	0	.	1530
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	84233541	84233541	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRSS35	NM_153362	exon2	c.C381A	p.T127T	.	.	157	10	210	0	.	91
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33796749	33796749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRSS3	NM_007343	exon2	c.G320A	p.G107D	.	.	174	21	229	0	.	90
PRUNE2	158471	bcgsc.ca	37	9	79323027	79323027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PRUNE2	NM_015225	exon8	c.T4163C	p.V1388A	.	.	128	5	169	1	.	157
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40485836	40485836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PSMC4	NM_006503	exon7	c.C786G	p.I262M	.	.	161	34	188	0	.	91
PTAR1	375743	ucsc.edu;bcgsc.ca	37	9	72347125	72347125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PTAR1	NM_001099666	exon5	c.A572G	p.Y191C	.	.	45	4	101	0	.	69
PTPRH	5794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55715293	55715293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PTPRH	NM_002842	exon5	c.A743G	p.D248G	.	.	148	31	165	1	.	138
PUS7L	83448	bcgsc.ca	37	12	44130446	44130446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	PUS7L	NM_001098614	exon7	c.T1463C	p.L488P	.	.	76	5	81	0	.	91
RACGAP1P	83956	broad.mit.edu;bcgsc.ca	37	12	45458982	45458982	+	RNA	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	.	.	.	.	.	.	80	13	119	0	.	.
RALY	22913	mdanderson.org	37	20	32664880	32664880	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RALY	NM_016732	exon8	c.T705C	p.G235G	.	.	17	4	17	0	.	91
RALYL	138046	bcgsc.ca	37	8	85686867	85686867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RALYL	NM_001100391	exon3	c.A349G	p.R117G	.	.	64	4	70	1	.	23
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109380631	109380631	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RANBP2	NM_006267	exon20	c.A3636G	p.K1212K	.	.	35	4	72	0	.	675
RAPGEF6	51735	bcgsc.ca	37	5	130834142	130834142	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RAPGEF6	NM_001164387	exon12	c.A1413G	p.R471R	.	.	85	5	86	0	.	661
RAVER2	55225	bcgsc.ca	37	1	65234402	65234402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RAVER2	NM_018211	exon2	c.A313G	p.T105A	.	.	79	4	113	0	.	135
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66384504	66384504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RBM14	NM_001198837	exon1	c.G313T	p.V105F	.	.	76	9	73	0	.	92
RBPJ	3516	bcgsc.ca	37	4	26387973	26387973	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RBPJ	NM_203283	exon2	c.15-2A>G	.	.	.	125	6	70	0	.	659
REV3L	5980	bcgsc.ca	37	6	111737614	111737614	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	REV3L	NM_002912	exon2	c.T201C	p.G67G	.	.	79	4	173	1	.	294
RNF122	79845	bcgsc.ca	37	8	33406318	33406318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RNF122	NM_024787	exon6	c.T421C	p.S141P	.	.	188	6	251	3	.	226
RNF19B	127544	bcgsc.ca	37	1	33409639	33409639	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RNF19B	NM_153341	exon6	c.A1386G	p.E462E	.	.	154	5	155	1	.	68
ROS1	6098	bcgsc.ca	37	6	117686753	117686753	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ROS1	NM_002944	exon19	c.T2964C	p.A988A	.	.	87	4	170	0	.	1353
RPS6KA3	6197	bcgsc.ca	37	X	20227465	20227465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	RPS6KA3	NM_004586	exon3	c.A184G	p.K62E	.	.	61	4	71	0	.	1504
SAP130	79595	bcgsc.ca	37	2	128757639	128757639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SAP130	NM_001145928	exon9	c.A1177G	p.T393A	.	.	90	4	128	0	.	94
SCAF4	57466	bcgsc.ca	37	21	33067166	33067166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCAF4	NM_020706	exon10	c.A1196G	p.Q399R	.	.	140	6	155	0	.	90
SCAF8	22828	bcgsc.ca	37	6	155153926	155153926	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCAF8	NM_014892	exon20	c.T3213C	p.L1071L	.	.	47	4	51	0	.	91
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38991632	38991632	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCN11A	NM_014139	exon1	c.A222T	p.I74I	.	.	152	26	170	0	.	99
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38645542	38645542	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCN5A	NM_001160160	exon12	c.G1551A	p.R517R	.	.	107	16	101	0	.	98
SCP2	6342	bcgsc.ca	37	1	53420427	53420427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SCP2	NM_002979	exon5	c.T347C	p.V116A	.	.	167	5	166	2	.	153
SEMA6B	10501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4550257	4550257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SEMA6B	NM_032108	exon12	c.G1149A	p.M383I	.	.	107	26	138	0	.	91
SERINC1	57515	bcgsc.ca	37	6	122775027	122775027	+	Silent	SNP	A	A	C	rs199811199	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SERINC1	NM_020755	exon5	c.T477G	p.G159G	.	.	37	14	60	7	A|0.955;C|0.045	91
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49135766	49135766	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SHC4	NM_203349	exon10	c.G1323A	p.G441G	.	.	186	57	183	0	.	95
SLC11A1	6556	bcgsc.ca	37	2	219249011	219249011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC11A1	NM_000578	exon3	c.T196C	p.F66L	.	.	111	6	122	0	.	93
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48500027	48500027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC12A1	NM_001184832	exon2	c.T111A	p.D37E	.	.	83	25	120	0	.	24
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135377154	135377154	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC13A4	NM_012450	exon11	c.T1137C	p.T379T	.	.	81	17	86	0	.	90
SLC16A2	6567	bcgsc.ca	37	X	73745624	73745624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC16A2	NM_006517	exon4	c.A1066G	p.T356A	.	.	188	7	211	1	.	194
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66267772	66267772	+	Missense_Mutation	SNP	T	T	C	rs139961659		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC16A6	NM_001174166	exon6	c.A529G	p.I177V	.	.	95	19	93	0	T|1.000;C|0.000	90
SLC25A11	8402	broad.mit.edu	37	17	4841826	4841826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC25A11	NM_003562	exon4	c.G527A	p.G176D	.	.	56	3	37	0	.	90
SLC6A20	54716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45823619	45823619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLC6A20	NM_022405	exon2	c.G218A	p.S73N	.	.	108	33	151	1	.	92
SLK	9748	ucsc.edu	37	10	105785394	105785394	+	Silent	SNP	G	G	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SLK	NM_014720	exon19	c.G3624T	p.G1208G	.	.	111	4	93	0	.	549
SNAP25	6616	ucsc.edu;bcgsc.ca	37	20	10273575	10273575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SNAP25	NM_003081	exon5	c.A209G	p.D70G	.	.	39	4	61	0	.	92
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121644855	121644855	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SNTB1	NM_021021	exon3	c.G825A	p.T275T	.	.	96	5	131	0	.	228
SORCS1	114815	broad.mit.edu;bcgsc.ca	37	10	108389095	108389095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SORCS1	NM_001206572	exon19	c.G2527A	p.V843M	.	.	89	7	113	1	.	153
SPAG17	200162	bcgsc.ca	37	1	118579506	118579506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SPAG17	NM_206996	exon24	c.A3320G	p.E1107G	.	.	55	4	78	0	.	158
SPATA17	128153	bcgsc.ca	37	1	218036152	218036152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SPATA17	NM_138796	exon10	c.T1042C	p.S348P	.	.	55	4	65	0	.	69
SPG11	80208	bcgsc.ca	37	15	44887508	44887508	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SPG11	NM_025137	exon26	c.A4584G	p.L1528L	.	.	83	4	102	0	.	95
SSTR3	6753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37602722	37602722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SSTR3	NM_001051	exon2	c.T1121A	p.V374D	.	.	58	16	89	0	.	522
ST3GAL3	6487	bcgsc.ca	37	1	44395814	44395814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ST3GAL3	NM_174963	exon13	c.A1256G	p.H419R	.	.	73	4	95	0	.	93
STK31	56164	bcgsc.ca	37	7	23793966	23793966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	STK31	NM_031414	exon10	c.A1166G	p.D389G	.	.	125	5	187	0	.	338
STK33	65975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8496345	8496345	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	STK33	NM_030906	exon3	c.A108G	p.P36P	.	.	92	21	140	0	.	337
STX10	8677	bcgsc.ca	37	19	13256201	13256201	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	STX10	NM_003765	exon5	c.A372G	p.A124A	.	.	58	4	69	0	.	90
SUFU	51684	bcgsc.ca	37	10	104352366	104352366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SUFU	NM_001178133	exon4	c.T482C	p.V161A	.	.	61	4	70	0	.	2246
SYNRG	11276	bcgsc.ca	37	17	35896114	35896114	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SYNRG	NM_007247	exon19	c.C3633T	p.N1211N	.	.	91	5	110	0	.	92
SYT8	90019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1858034	1858034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	SYT8	NM_138567	exon7	c.T775A	p.S259T	.	.	94	11	107	0	.	91
TBXAS1	6916	bcgsc.ca	37	7	139661914	139661914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TBXAS1	NM_001166253	exon10	c.T1157C	p.L386P	.	.	129	5	114	0	.	155
TDRD1	56165	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115986999	115986999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TDRD1	NM_198795	exon23	c.T3344G	p.L1115R	.	.	192	66	237	1	.	90
TENM2	57451	bcgsc.ca	37	5	167643926	167643926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001122679	exon22	c.A4205G	p.Q1402R	.	.	90	4	90	0	.	.
TET2	54790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	106155167	106155168	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TET2	NM_017628	exon3	c.68_69insT	p.P23fs	.	.	47	11	89	0	.	4618
TET2	54790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	106155168	106155169	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TET2	NM_017628	exon3	c.69_70insCA	p.P23fs	.	.	48	11	92	0	.	4618
TEX12	56158	bcgsc.ca	37	11	112042617	112042617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TEX12	NM_031275	exon5	c.T350C	p.I117T	.	.	99	4	86	0	.	90
TLE1	7088	bcgsc.ca	37	9	84235367	84235367	+	Missense_Mutation	SNP	A	A	G	rs201636079	byfrequency	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TLE1	NM_005077	exon9	c.T700C	p.S234P	.	.	200	26	233	4	A|0.993;G|0.007	92
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76113656	76113656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TMC6	NM_001127198	exon17	c.G2091T	p.W697C	.	.	67	20	86	0	.	90
TMEM185A	84548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148693147	148693147	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TMEM185A	NM_032508	exon3	c.39-1G>T	.	.	.	56	32	60	0	.	131
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57083958	57083958	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_017799	exon9	c.A999G	p.S333S	.	.	95	10	90	0	.	.
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1955638	1955638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TNNT3	NM_006757	exon12	c.C443T	p.S148F	.	.	92	14	82	0	.	91
TNPO2	30000	ucsc.edu;bcgsc.ca	37	19	12831732	12831732	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TNPO2	NM_013433	exon2	c.A60G	p.S20S	.	.	38	4	58	0	.	227
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	.	.	203	103	211	0	C|1.000;|0.000	70225
TPR	7175	bcgsc.ca	37	1	186307299	186307299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TPR	NM_003292	exon31	c.A4228G	p.K1410E	.	.	80	4	147	0	.	228
TRIM24	8805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	138239638	138239638	+	Missense_Mutation	SNP	G	G	A	rs201288398	alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM24	NM_015905	exon9	c.G1457A	p.R486Q	.	.	129	11	244	0	G|0.999;T|0.001	1030
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99490170	99490171	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM4	NM_033017	exon7	c.1119_1120insA	p.N373fs	.	.	137	16	139	0	.	227
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248039390	248039390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRIM58	NM_015431	exon6	c.G1060A	p.E354K	.	.	193	11	206	0	.	96
TRPA1	8989	broad.mit.edu;bcgsc.ca	37	8	72977741	72977741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRPA1	NM_007332	exon4	c.A497G	p.N166S	.	.	192	6	277	0	.	230
TRPC1	7220	bcgsc.ca	37	3	142521108	142521108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRPC1	NM_001251845	exon10	c.A1679G	p.D560G	.	.	94	4	225	0	.	92
TRPM6	140803	bcgsc.ca	37	9	77359021	77359021	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TRPM6	NM_017662	exon32	c.T5124C	p.H1708H	.	.	54	4	81	1	.	335
TTC37	9652	bcgsc.ca	37	5	94863783	94863783	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	TTC37	NM_014639	exon13	c.A1068G	p.K356K	.	.	70	4	195	2	.	94
U2AF1L4	199746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36236067	36236067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	U2AF1L4	NM_144987	exon2	c.G91A	p.D31N	.	.	56	19	78	0	.	90
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76165791	76165791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UBE2Q2	NM_173469	exon5	c.A470G	p.Y157C	.	.	130	20	183	0	.	70
UBE3A	7337	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25616256	25616256	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UBE3A	NM_000462	exon7	c.T1074C	p.S358S	.	.	125	19	132	1	.	660
UCHL3	7347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	76140947	76140947	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UCHL3	NM_006002	exon4	c.G300A	p.L100L	.	.	54	8	102	0	.	522
UNC13C	440279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54306041	54306041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UNC13C	NM_001080534	exon1	c.A941G	p.H314R	.	.	51	7	83	0	.	51
UNC80	285175	broad.mit.edu	37	2	210818977	210818977	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UNC80	NM_032504	exon47	c.T7242A	p.S2414R	.	.	70	6	90	0	.	90
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210699734	210699734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UNC80	NM_032504	exon18	c.A3041T	p.H1014L	.	.	19	6	62	0	.	90
UROS	7390	bcgsc.ca	37	10	127477546	127477546	+	Missense_Mutation	SNP	C	C	G	rs201616690		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	UROS	NM_000375	exon10	c.G689C	p.R230P	.	.	136	47	174	12	C|0.999;G|0.001	90
USP9X	8239	broad.mit.edu;bcgsc.ca	37	X	41012219	41012219	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	USP9X	NM_001039591	exon14	c.C1782T	p.P594P	.	.	67	5	55	0	.	563
VAV3	10451	bcgsc.ca	37	1	108315369	108315369	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	VAV3	NM_006113	exon5	c.A543G	p.E181E	.	.	94	5	101	0	.	1339
VTA1	51534	broad.mit.edu;bcgsc.ca	37	6	142487370	142487370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	VTA1	NM_016485	exon2	c.T118C	p.L40L	.	.	126	7	154	0	.	90
WBP11	51729	broad.mit.edu;bcgsc.ca	37	12	14953690	14953690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WBP11	NM_016312	exon3	c.A92G	p.K31R	.	.	75	6	141	0	.	92
WDR35	57539	bcgsc.ca	37	2	20113821	20113821	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WDR35	NM_001006657	exon27	c.T3372C	p.P1124P	.	.	127	5	100	0	.	91
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167277892	167277892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WDR49	NM_178824	exon5	c.A611T	p.E204V	.	.	152	44	222	0	.	155
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69959360	69959360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	WWP2	NM_001270454	exon11	c.C1207T	p.P403S	.	.	157	40	129	0	.	658
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168099492	168099492	+	Missense_Mutation	SNP	C	C	G	rs112137897		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XIRP2	NM_152381	exon9	c.C1590G	p.N530K	.	.	43	5	77	0	C|0.500;G|0.500	104
XKR3	150165	bcgsc.ca	37	22	17288959	17288959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XKR3	NM_175878	exon2	c.A5G	p.E2G	.	.	117	5	134	0	.	92
XKR6	286046	bcgsc.ca	37	8	10755499	10755499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XKR6	NM_173683	exon3	c.T1889C	p.L630P	.	.	102	5	135	1	.	92
XPO4	64328	bcgsc.ca	37	13	21417103	21417103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XPO4	NM_022459	exon6	c.T658C	p.S220P	.	.	89	6	169	0	.	272
XRN1	54464	bcgsc.ca	37	3	142098932	142098932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	XRN1	NM_001042604	exon23	c.A2707G	p.N903D	.	.	135	5	191	2	.	93
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112899131	112899131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	YTHDC2	NM_022828	exon19	c.T2384C	p.M795T	.	.	124	17	104	0	.	92
ZAK	0	bcgsc.ca	37	2	174130823	174130823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZAK	NM_016653	exon20	c.C1748T	p.A583V	.	.	106	5	177	0	.	522
ZAN	7455	bcgsc.ca	37	7	100370970	100370970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZAN	.	.	.	.	.	.	77	5	96	0	.	142
ZC3H12B	340554	bcgsc.ca	37	X	64717078	64717078	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZC3H12B	NM_001010888	exon2	c.A675G	p.K225K	.	.	67	4	62	0	.	131
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47569634	47569634	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZC3H4	NM_015168	exon15	c.G3891T	p.T1297T	.	.	64	12	73	0	.	74
ZCCHC12	170261	broad.mit.edu;bcgsc.ca	37	X	117960058	117960058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZCCHC12	NM_173798	exon4	c.A851G	p.D284G	.	.	136	6	98	0	.	131
ZDHHC11	79844	broad.mit.edu	37	5	837542	837542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZDHHC11	NM_024786	exon6	c.A838G	p.S280G	.	.	652	9	499	0	.	92
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124266621	124266621	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZHX1	NM_007222	exon3	c.A1566G	p.S522S	.	.	54	20	100	0	.	91
ZNF14	7561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19822650	19822650	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF14	NM_021030	exon4	c.T1440C	p.C480C	.	.	48	10	69	0	.	517
ZNF169	169841	bcgsc.ca	37	9	97062236	97062236	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF169	NM_194320	exon5	c.A396G	p.E132E	.	.	53	4	63	0	.	92
ZNF224	7767	bcgsc.ca	37	19	44610871	44610871	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF224	NM_013398	exon6	c.T558C	p.C186C	.	.	141	6	129	0	.	92
ZNF283	284349	bcgsc.ca	37	19	44352097	44352097	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF283	NM_181845	exon7	c.A1344G	p.Q448Q	.	.	68	4	64	0	.	68
ZNF341	84905	bcgsc.ca	37	20	32349740	32349740	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF341	NM_032819	exon8	c.A1080G	p.K360K	.	.	85	4	86	0	.	92
ZNF483	158399	bcgsc.ca	37	9	114293179	114293179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF483	NM_133464	exon3	c.T437C	p.V146A	.	.	97	5	107	0	.	91
ZNF496	84838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	247464447	247464447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF496	NM_032752	exon9	c.G1138T	p.E380X	.	.	154	47	190	0	.	91
ZNF525	170958	ucsc.edu	37	19	53886793	53886793	+	RNA	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	.	.	.	.	.	.	57	13	57	0	.	.
ZNF585B	92285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37676268	37676268	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF585B	NM_152279	exon5	c.G2171C	p.G724A	.	.	311	73	332	1	.	91
ZNF675	171392	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23836584	23836584	+	Missense_Mutation	SNP	G	G	A	rs200866824	alternate_allele	TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF675	NM_138330	exon4	c.C1151T	p.T384M	.	.	33	8	27	0	G|0.999;C|0.001	228
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12575313	12575313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZNF709	NM_152601	exon4	c.C1423T	p.P475S	.	.	42	8	51	0	.	90
ZNF749	388567	broad.mit.edu;bcgsc.ca	37	19	57955019	57955019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001023561	exon3	c.T503C	p.L168P	.	.	130	6	131	1	.	.
ZNF814	730051	mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	184	75	118	1	.	.
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	156	53	109	0	.	.
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12155914	12155914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001080404	exon4	c.C302T	p.S101L	.	.	124	31	142	0	.	.
ZNF880	400713	hgsc.bcm.edu	37	19	52887146	52887146	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	.	NM_001145434	exon4	c.A313T	p.K105X	.	.	108	6	93	0	.	.
ZWILCH	55055	bcgsc.ca	37	15	66828277	66828277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3M9-01A-11D-A20W-10	TCGA-CC-A3M9-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a532b617-df73-4bc6-aa5f-40882defe2f0	0249fd94-5666-465e-9f4a-8c1f2bf0bbc6	.	ZWILCH	NM_017975	exon15	c.T1348C	p.F450L	.	.	76	5	65	0	.	91
