Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACACB	32	bcgsc.ca	37	12	109644623	109644623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACACB	NM_001093	exon19	c.A3022G	p.S1008G	.	.	144	5	187	0	.	98
ACADM	34	hgsc.bcm.edu;bcgsc.ca	37	1	76216192	76216192	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACADM	NM_001127328	exon10	c.T918C	p.Y306Y	.	.	86	4	75	0	.	155
ACIN1	22985	hgsc.bcm.edu	37	14	23530644	23530644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACIN1	NM_014977	exon17	c.A3461G	p.E1154G	.	.	89	4	136	0	.	156
ACOT9	23597	hgsc.bcm.edu	37	X	23726023	23726023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACOT9	NM_001037171	exon10	c.A701G	p.E234G	.	.	79	4	80	0	.	133
ADAMTS6	11174	broad.mit.edu	37	5	64748696	64748696	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADAMTS6	NM_197941	exon5	c.T681C	p.V227V	.	.	270	4	258	0	.	226
ADAMTS6	11174	hgsc.bcm.edu	37	5	64466487	64466487	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADAMTS6	NM_197941	exon24	c.G3201A	p.Q1067Q	.	.	98	4	106	0	.	226
ADAR	103	broad.mit.edu	37	1	154574234	154574234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADAR	NM_015840	exon2	c.A884G	p.D295G	.	.	173	5	103	0	.	157
ADCK5	203054	hgsc.bcm.edu	37	8	145617507	145617507	+	Missense_Mutation	SNP	C	C	G	rs201295286		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADCK5	NM_174922	exon12	c.C1229G	p.A410G	.	.	33	7	2	0	C|0.991;G|0.009	333
ADORA3	140	hgsc.bcm.edu	37	1	112033360	112033360	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	ADORA3_ENST00000369716,NS,carcinoma,0	ADORA3	NM_020683	exon2	c.G375A	p.G125G	.	.	43	2	29	0	.	156
ADPGK	83440	bcgsc.ca	37	15	73044829	73044829	+	Missense_Mutation	SNP	G	G	T	rs75554647	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADPGK	NM_031284	exon7	c.C1344A	p.N448K	.	.	113	20	169	8	G|0.965;T|0.036	90
ADRA2B	151	hgsc.bcm.edu	37	2	96780998	96780998	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADRA2B	NM_000682	exon1	c.T891G	p.A297A	.	.	178	15	137	0	.	229
AIM1	202	hgsc.bcm.edu	37	6	106960807	106960807	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AIM1	NM_001624	exon1	c.A591G	p.R197R	.	.	79	4	81	0	.	139
AKAP4	8852	hgsc.bcm.edu;bcgsc.ca	37	X	49958534	49958534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP4	NM_003886	exon5	c.A830G	p.E277G	.	.	65	4	46	0	.	540
AKAP8	10270	hgsc.bcm.edu;bcgsc.ca	37	19	15484733	15484733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP8	NM_005858	exon4	c.T235C	p.S79P	.	.	97	5	104	0	.	290
ANKRD11	29123	hgsc.bcm.edu	37	16	89346163	89346163	+	Missense_Mutation	SNP	G	G	A	rs76793093		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANKRD11	NM_001256183	exon9	c.C6787T	p.P2263S	.	.	14	9	0	0	G|0.959;A|0.041	139
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89341222	89341227	+	In_Frame_Del	DEL	CTGGCT	CTGGCT	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	CTGGCT	CTGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANKRD11	NM_001256183	exon11	c.7708_7713del	p.2570_2571del	.	.	70	18	90	0	.	139
ANKS1B	56899	hgsc.bcm.edu	37	12	99447084	99447084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_152788	exon17	c.A2629G	p.R877G	.	.	71	4	93	0	.	.
ANO4	121601	hgsc.bcm.edu;bcgsc.ca	37	12	101333217	101333217	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANO4	NM_178826	exon3	c.A180G	p.E60E	.	.	63	4	110	0	.	96
AOC3	8639	broad.mit.edu	37	17	41008331	41008331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AOC3	NM_003734	exon4	c.C2056T	p.P686S	.	.	236	5	223	0	.	516
AP2A2	161	ucsc.edu;bcgsc.ca	37	11	993286	993286	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AP2A2	NM_001242837	exon12	c.T1458C	p.A486A	.	.	30	4	57	0	.	90
APOB	338	hgsc.bcm.edu	37	2	21250701	21250701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	APOB	NM_000384	exon14	c.A2066G	p.E689G	.	.	98	4	92	0	.	175
APOC2	344	ucsc.edu	37	19	45452072	45452072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	APOC2	NM_000483	exon3	c.A170G	p.N57S	.	.	30	4	43	0	.	45
ARFIP2	23647	hgsc.bcm.edu;bcgsc.ca	37	11	6501574	6501574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARFIP2	NM_012402	exon2	c.T78C	p.P26P	.	.	70	4	132	0	.	90
ARHGAP17	55114	hgsc.bcm.edu;bcgsc.ca	37	16	24958829	24958829	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP17	NM_001006634	exon14	c.T1215C	p.P405P	.	.	68	4	64	0	.	227
ARHGAP36	158763	hgsc.bcm.edu;bcgsc.ca	37	X	130220617	130220617	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP36	NM_144967	exon11	c.T1464C	p.A488A	.	.	78	4	61	0	.	133
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46246364	46246376	+	Frame_Shift_Del	DEL	TCCCGACTCAGGA	TCCCGACTCAGGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	TCCCGACTCAGGA	TCCCGACTCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARID2	NM_152641	exon15	c.4458_4470del	p.1486_1490del	.	.	81	23	210	0	.	100
ART3	419	hgsc.bcm.edu	37	4	77003153	77003153	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ART3	NM_001130017	exon3	c.T246C	p.T82T	.	.	61	4	62	0	.	92
ASB13	79754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5691033	5691033	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ASB13	NM_024701	exon4	c.C417T	p.V139V	.	.	105	61	98	0	.	227
ATAD1	84896	hgsc.bcm.edu;bcgsc.ca	37	10	89544340	89544340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATAD1	NM_032810	exon5	c.T470C	p.L157P	.	.	89	5	108	0	.	578
ATF7	11016	hgsc.bcm.edu	37	12	53911113	53911113	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATF7	NM_006856	exon12	c.A1260G	p.P420P	.	.	89	4	144	0	.	455
ATP10A	57194	hgsc.bcm.edu	37	15	26026243	26026243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP10A	NM_024490	exon2	c.T577C	p.C193R	.	.	114	5	167	0	.	139
ATP13A4	84239	ucsc.edu;bcgsc.ca	37	3	193151700	193151700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP13A4	NM_032279	exon25	c.A2776G	p.N926D	.	.	28	4	30	0	.	92
ATP6V0D1	9114	hgsc.bcm.edu	37	16	67477048	67477048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP6V0D1	NM_004691	exon4	c.A515G	p.D172G	.	.	145	6	187	0	.	90
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79414423	79414423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BAHCC1	.	.	.	.	.	.	50	13	95	0	.	23
BBS9	27241	hgsc.bcm.edu;bcgsc.ca	37	7	33217138	33217138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BBS9	NM_014451	exon5	c.T377C	p.M126T	.	.	70	4	64	0	.	230
BCL2	596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60795978	60795978	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BCL2	NM_000633	exon3	c.A600G	p.E200E	.	.	119	42	132	0	.	1271
BHLHB9	80823	bcgsc.ca	37	X	102005198	102005198	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BHLHB9	NM_001142530	exon2	c.A1275G	p.G425G	.	.	98	4	127	1	.	132
BRF2	55290	hgsc.bcm.edu	37	8	37702706	37702706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BRF2	NM_018310	exon4	c.T562C	p.S188P	.	.	97	4	187	0	.	90
BRSK1	84446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55816894	55816894	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BRSK1	NM_032430	exon16	c.C1830T	p.L610L	.	.	185	59	182	1	.	759
BUB1B	701	hgsc.bcm.edu	37	15	40504778	40504778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BUB1B	NM_001211	exon19	c.T2464C	p.F822L	.	.	73	4	109	0	.	1509
C15orf55	256646	hgsc.bcm.edu;bcgsc.ca	37	15	34646648	34646648	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C15orf55	NM_175741	exon5	c.G993A	p.V331V	.	.	68	4	160	0	.	206
C16orf88	400506	hgsc.bcm.edu;bcgsc.ca	37	16	19725915	19725915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C16orf88	NM_001012991	exon2	c.T443C	p.L148P	.	.	68	4	95	0	.	68
C1QTNF8	390664	hgsc.bcm.edu;bcgsc.ca	37	16	1143730	1143730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C1QTNF8	NM_207419	exon4	c.A530G	p.E177G	.	.	70	4	66	0	.	91
C5orf42	65250	hgsc.bcm.edu	37	5	37183712	37183712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C5orf42	NM_023073	exon26	c.A4571G	p.K1524R	.	.	68	4	90	0	.	94
CACNA1B	774	hgsc.bcm.edu	37	9	140918185	140918185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CACNA1B	NM_001243812	exon19	c.C2990T	p.T997M	.	.	148	8	132	0	.	138
CACNA1C	775	hgsc.bcm.edu	37	12	2764398	2764398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CACNA1C	NM_199460	exon36	c.T4370C	p.L1457P	.	.	91	4	92	0	.	34
CAGE1	285782	hgsc.bcm.edu	37	6	7366104	7366104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CAGE1	NM_001170693	exon8	c.A2018G	p.K673R	.	.	59	4	71	0	.	22
CAPN10	11132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241534647	241534647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CAPN10	NM_023085	exon7	c.G1204T	p.D402Y	.	.	293	72	222	0	.	656
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37902375	37902375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CARD10	NM_014550	exon7	c.G1207T	p.D403Y	.	.	230	68	207	0	.	662
CASC4	113201	hgsc.bcm.edu	37	15	44695118	44695118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CASC4	NM_138423	exon9	c.A1106G	p.D369G	.	.	77	4	158	0	.	91
CATSPERB	79820	hgsc.bcm.edu	37	14	92102785	92102785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CATSPERB	NM_024764	exon17	c.A1726G	p.K576E	.	.	123	5	195	0	.	138
CCDC136	64753	hgsc.bcm.edu;bcgsc.ca	37	7	128452197	128452197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC136	NM_022742	exon13	c.A2372G	p.D791G	.	.	103	5	110	0	.	24
CCDC178	374864	bcgsc.ca	37	18	30795532	30795532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001105528	exon18	c.A2060G	p.Q687R	.	.	102	6	106	1	.	.
CCDC30	728621	hgsc.bcm.edu;bcgsc.ca	37	1	43076653	43076653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC30	NM_001080850	exon10	c.T1388C	p.V463A	.	.	65	4	82	0	.	90
CCDC33	80125	hgsc.bcm.edu	37	15	74536404	74536404	+	Missense_Mutation	SNP	A	A	G	rs199782040		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC33	NM_025055	exon2	c.A100G	p.K34E	.	.	86	14	132	0	A|0.999;G|0.001	95
CCDC62	84660	hgsc.bcm.edu;bcgsc.ca	37	12	123285708	123285708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC62	NM_201435	exon9	c.C1015T	p.P339S	.	.	81	4	124	0	.	157
CCDC74B	91409	broad.mit.edu	37	2	130897930	130897930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC74B	NM_207310	exon5	c.A698G	p.E233G	.	.	405	6	460	2	.	90
CCNJ	54619	hgsc.bcm.edu;bcgsc.ca	37	10	97816897	97816897	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCNJ	NM_001134375	exon5	c.T633C	p.A211A	.	.	133	6	293	0	.	91
CCNK	8812	hgsc.bcm.edu	37	14	99968582	99968582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001099402	exon7	c.T614C	p.I205T	.	.	93	4	152	0	.	.
CD8B	926	bcgsc.ca	37	2	87042843	87042843	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CD8B	NM_001178100	exon5	c.494-2A>G	.	.	.	140	5	130	1	.	92
CDC123	8872	bcgsc.ca	37	10	12272974	12272974	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDC123	NM_006023	exon7	c.A468G	p.P156P	.	.	177	5	108	0	.	514
CDC42BPB	9578	hgsc.bcm.edu	37	14	103466024	103466024	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDC42BPB	NM_006035	exon5	c.T474C	p.G158G	.	.	98	5	175	0	.	581
CDH16	1014	hgsc.bcm.edu;bcgsc.ca	37	16	66946026	66946026	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH16	NM_004062	exon13	c.A1566G	p.A522A	.	.	75	4	96	0	.	93
CDH6	1004	hgsc.bcm.edu;bcgsc.ca	37	5	31305284	31305284	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH6	NM_004932	exon7	c.T1003C	p.L335L	.	.	54	5	61	0	.	159
CDK5RAP2	55755	bcgsc.ca	37	9	123292318	123292318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDK5RAP2	NM_018249	exon8	c.T763C	p.S255P	.	.	154	5	194	0	.	229
CDKN2C	1031	hgsc.bcm.edu	37	1	51436144	51436144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDKN2C	NM_001262	exon2	c.A104G	p.N35S	.	.	94	4	89	0	.	1881
CEACAM20	125931	hgsc.bcm.edu	37	19	45016992	45016992	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CEACAM20	NM_001102600	exon9	c.1447+1A>G	.	.	.	260	9	230	1	.	67
CENPT	80152	hgsc.bcm.edu;bcgsc.ca	37	16	67864301	67864301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CENPT	NM_025082	exon11	c.A854G	p.Q285R	.	.	94	6	119	0	.	90
CEP350	9857	hgsc.bcm.edu	37	1	179972310	179972310	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CEP350	NM_014810	exon7	c.T1020C	p.G340G	.	.	117	5	68	0	.	26
CEP44	80817	hgsc.bcm.edu	37	4	175224972	175224972	+	Missense_Mutation	SNP	A	A	G	rs143573166	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CEP44	NM_001040157	exon5	c.A356G	p.K119R	.	.	96	4	166	0	A|1.000;C|0.000	68
CHST6	4166	hgsc.bcm.edu	37	16	75513087	75513087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CHST6	NM_021615	exon3	c.A640G	p.T214A	.	.	75	4	8	0	.	90
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120241020	120241020	+	Missense_Mutation	SNP	C	C	G	rs145965687	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CIT	NM_001206999	exon10	c.G1285C	p.G429R	.	.	77	53	112	0	C|0.999;T|0.000	399
CLASP1	23332	hgsc.bcm.edu	37	2	122159109	122159109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CLASP1	NM_015282	exon27	c.T2876C	p.V959A	.	.	122	5	95	0	.	91
CLECL1	160365	hgsc.bcm.edu	37	12	9885707	9885707	+	Missense_Mutation	SNP	A	A	T	rs113575400		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CLECL1	NM_001267701	exon1	c.T154A	p.S52T	.	.	98	8	108	0	T|1.000;|0.000	90
CLECL1	160365	hgsc.bcm.edu	37	12	9885713	9885713	+	Missense_Mutation	SNP	A	A	T	rs200639830		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CLECL1	NM_001267701	exon1	c.T148A	p.Y50N	.	.	103	9	110	0	.	90
CNTN3	5067	hgsc.bcm.edu;bcgsc.ca	37	3	74418520	74418520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CNTN3	NM_020872	exon7	c.A766G	p.I256V	.	.	81	4	184	0	.	137
CNTNAP3	79937	broad.mit.edu	37	9	39118188	39118188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CNTNAP3	NM_033655	exon14	c.C2149T	p.P717S	.	.	958	211	943	1	.	91
COBL	23242	hgsc.bcm.edu	37	7	51098573	51098573	+	Missense_Mutation	SNP	T	T	A	rs76265922	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COBL	NM_015198	exon9	c.A1440T	p.E480D	.	.	141	15	162	0	T|0.988;A|0.012	95
COL1A2	1278	hgsc.bcm.edu	37	7	94035575	94035575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL1A2	NM_000089	exon12	c.T554C	p.L185P	.	.	91	4	68	0	.	521
COL2A1	1280	hgsc.bcm.edu	37	12	48372091	48372091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL2A1	NM_001844	exon43	c.G2986A	p.G996S	.	.	91	4	143	0	.	92
COL4A4	1286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227922184	227922184	+	Missense_Mutation	SNP	G	G	A	rs199562472		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL4A4	NM_000092	exon29	c.C2516T	p.P839L	.	.	75	23	61	1	G|0.999;A|0.001	142
CORIN	10699	hgsc.bcm.edu;bcgsc.ca	37	4	47685795	47685795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CORIN	NM_006587	exon7	c.G974A	p.C325Y	.	.	67	4	60	0	.	91
CSPP1	79848	hgsc.bcm.edu	37	8	68070772	68070772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CSPP1	NM_024790	exon18	c.G2317A	p.A773T	.	.	83	4	104	0	.	138
CTC1	80169	hgsc.bcm.edu	37	17	8131865	8131865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CTC1	NM_025099	exon22	c.T3470C	p.L1157P	.	.	95	4	122	0	.	93
CTNNAL1	8727	hgsc.bcm.edu	37	9	111735058	111735058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CTNNAL1	NM_003798	exon9	c.A1244G	p.H415R	.	.	82	4	88	0	.	228
CUBN	8029	broad.mit.edu	37	10	17113966	17113966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CUBN	NM_001081	exon18	c.G2306A	p.R769Q	.	.	119	3	64	0	.	166
CXorf64	100130613	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125954900	125954900	+	Silent	SNP	C	C	T	rs41309536		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001122716	exon2	c.C279T	p.Y93Y	.	.	112	81	100	0	C|0.879;T|0.121	.
CYP27A1	1593	hgsc.bcm.edu	37	2	219646908	219646908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CYP27A1	NM_000784	exon1	c.G3C	p.M1I	.	.	10	6	3	0	.	91
DAO	1610	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	109288138	109288138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DAO	NM_001917	exon7	c.A607G	p.M203V	.	.	44	4	83	0	.	92
DAPK3	1613	hgsc.bcm.edu	37	19	3959236	3959236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DAPK3	NM_001348	exon8	c.A1228G	p.K410E	.	.	64	4	13	0	.	874
DCAF15	90379	hgsc.bcm.edu	37	19	14070706	14070706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCAF15	NM_138353	exon9	c.A1439G	p.E480G	.	.	104	5	113	0	.	90
DCBLD1	285761	hgsc.bcm.edu;bcgsc.ca	37	6	117861869	117861869	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCBLD1	NM_173674	exon10	c.A1140G	p.Q380Q	.	.	95	4	131	0	.	91
DCPS	28960	broad.mit.edu;bcgsc.ca	37	11	126176496	126176496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCPS	NM_014026	exon2	c.A233G	p.E78G	.	.	176	7	195	1	.	90
DCUN1D2	55208	hgsc.bcm.edu	37	13	114112422	114112422	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCUN1D2	NM_001014283	exon7	c.A702G	p.G234G	.	.	89	5	79	0	.	90
DDX55	57696	hgsc.bcm.edu	37	12	124104625	124104625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DDX55	NM_020936	exon14	c.A1741G	p.T581A	.	.	88	4	149	0	.	227
DENND5B	160518	bcgsc.ca	37	12	31566476	31566476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DENND5B	NM_144973	exon13	c.A2575G	p.I859V	.	.	77	4	154	0	.	24
DFFA	1676	broad.mit.edu;bcgsc.ca	37	1	10521749	10521749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DFFA	NM_004401	exon6	c.A794G	p.K265R	.	.	156	6	251	0	.	90
DGKI	9162	hgsc.bcm.edu;bcgsc.ca	37	7	137374712	137374712	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DGKI	NM_004717	exon2	c.T438C	p.A146A	.	.	87	5	75	0	.	228
DLC1	10395	hgsc.bcm.edu	37	8	13357252	13357252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DLC1	NM_182643	exon2	c.T329C	p.V110A	.	.	89	4	91	0	.	657
DLST	1743	hgsc.bcm.edu;bcgsc.ca	37	14	75365074	75365074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DLST	NM_001933	exon11	c.A773G	p.N258S	.	.	92	4	140	0	.	227
DMBX1	127343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46976674	46976674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMBX1	NM_147192	exon3	c.A416G	p.Q139R	.	.	117	43	124	0	.	227
DMD	1756	bcgsc.ca	37	X	32481704	32481704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMD	NM_004006	exon25	c.T3284C	p.V1095A	.	.	45	4	41	0	.	265
DMXL2	23312	hgsc.bcm.edu;bcgsc.ca	37	15	51748508	51748508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMXL2	NM_001174116	exon37	c.A8333G	p.Y2778C	.	.	99	4	197	0	.	99
DNAH12	201625	hgsc.bcm.edu	37	3	57343779	57343779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH12	NM_178504	exon53	c.T8396C	p.L2799P	.	.	93	4	150	0	.	47
DNAH6	1768	hgsc.bcm.edu	37	2	84806671	84806671	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH6	NM_001370	exon14	c.T2097C	p.P699P	.	.	90	4	81	0	.	69
DNAH7	56171	hgsc.bcm.edu;bcgsc.ca	37	2	196750895	196750895	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH7	NM_018897	exon34	c.A5508G	p.R1836R	.	.	100	4	58	0	.	102
DNAJA2	10294	bcgsc.ca	37	16	47001427	47001427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAJA2	NM_005880	exon5	c.A575G	p.E192G	.	.	148	5	144	0	.	226
DNAJA4	55466	hgsc.bcm.edu	37	15	78572631	78572631	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAJA4	NM_018602	exon8	c.T1110C	p.P370P	.	.	60	4	76	0	.	226
DNHD1	144132	bcgsc.ca	37	11	6530490	6530490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNHD1	NM_173589	exon5	c.T1223C	p.L408P	.	.	35	3	71	0	.	24
DOCK8	81704	hgsc.bcm.edu	37	9	441995	441995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DOCK8	NM_203447	exon42	c.T5476C	p.S1826P	.	.	51	4	50	0	.	517
DOLPP1	57171	hgsc.bcm.edu	37	9	131847308	131847308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DOLPP1	NM_001135917	exon3	c.T184C	p.F62L	.	.	64	4	57	0	.	91
DSG4	147409	hgsc.bcm.edu	37	18	28972131	28972131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DSG4	NM_001134453	exon8	c.T833C	p.I278T	.	.	91	4	91	0	.	177
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7580098	7580098	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DSP	NM_004415	exon23	c.C3675G	p.S1225S	.	.	91	39	116	0	.	518
DST	667	bcgsc.ca	37	6	56507264	56507264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	DST,brain,glioma,+2	DST	NM_001723	exon2	c.A205G	p.R69G	.	.	164	5	130	0	.	523
DTD2	112487	hgsc.bcm.edu	37	14	31917645	31917645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_080664	exon3	c.A197G	p.N66S	.	.	74	4	123	0	.	.
DTX3	196403	hgsc.bcm.edu	37	12	58001168	58001168	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DTX3	NM_178502	exon5	c.C522T	p.A174A	.	.	123	5	189	0	.	1083
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103018563	103018563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DYNC2H1	NM_001377	exon19	c.T2765C	p.L922P	.	.	64	4	41	0	.	68
EDC4	23644	hgsc.bcm.edu	37	16	67916724	67916724	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EDC4	NM_014329	exon26	c.T3585C	p.S1195S	.	.	76	4	89	0	.	92
EFEMP1	2202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56145028	56145028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EFEMP1	NM_001039349	exon4	c.G289A	p.A97T	.	.	199	78	217	0	.	520
EIF1AY	9086	bcgsc.ca	37	Y	22741553	22741553	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EIF1AY	NM_004681	exon2	c.T76C	p.L26L	.	.	77	4	103	0	.	424
EIF5	1983	hgsc.bcm.edu;bcgsc.ca	37	14	103803078	103803078	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EIF5	NM_001969	exon5	c.T219C	p.R73R	.	.	80	4	97	0	.	155
EMILIN2	84034	bcgsc.ca	37	18	2847857	2847857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EMILIN2	NM_032048	exon2	c.A185G	p.E62G	.	.	36	4	42	0	.	93
ENPP3	5169	hgsc.bcm.edu	37	6	132047295	132047295	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ENPP3	NM_005021	exon20	c.A1908G	p.K636K	.	.	98	4	156	0	.	95
EPS15L1	58513	hgsc.bcm.edu	37	19	16513229	16513229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EPS15L1	NM_021235	exon16	c.A1694G	p.D565G	.	.	100	4	84	0	.	95
ERAP1	51752	bcgsc.ca	37	5	96139387	96139387	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ERAP1	NM_001198541	exon2	c.A243G	p.K81K	.	.	139	5	163	2	.	70
ERICH1	157697	bcgsc.ca	37	8	665948	665948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ERICH1	NM_207332	exon2	c.A82G	p.R28G	.	.	208	6	230	0	.	153
ERICH1	157697	broad.mit.edu;bcgsc.ca	37	8	665864	665864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ERICH1	NM_207332	exon2	c.A166G	p.T56A	.	.	224	7	239	1	.	153
ERLIN2	11160	hgsc.bcm.edu	37	8	37611578	37611578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ERLIN2	NM_007175	exon12	c.A965G	p.K322R	.	.	95	4	140	0	.	90
EXOC3L1	283849	hgsc.bcm.edu	37	16	67219052	67219052	+	Missense_Mutation	SNP	T	T	C	rs145474504	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EXOC3L1	NM_178516	exon11	c.A1736G	p.N579S	.	.	93	4	117	0	T|0.999;C|0.001	110
EYS	346007	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	64498005	64498005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EYS	NM_001142800	exon39	c.T7716C	p.G2572G	.	.	56	5	58	0	.	660
F10	2159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	113803258	113803258	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	F10	NM_000504	exon8	c.C894T	p.G298G	.	.	420	26	361	0	.	227
F8	2157	hgsc.bcm.edu	37	X	154194405	154194405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	F8	NM_000132	exon9	c.G1283A	p.S428N	.	.	91	4	50	0	.	182
FAM120C	54954	hgsc.bcm.edu;bcgsc.ca	37	X	54162988	54162988	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM120C	NM_017848	exon5	c.A1194G	p.K398K	.	.	75	4	76	0	.	131
FAM157A	728262	bcgsc.ca	37	3	197880129	197880129	+	Missense_Mutation	SNP	T	T	C	rs28554473		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001145248	exon2	c.T208C	p.W70R	.	.	372	12	375	3	.	.
FAM157A	728262	bcgsc.ca	37	3	197880136	197880136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001145248	exon2	c.A215G	p.Q72R	.	.	399	10	387	4	.	.
FAM157A	728262	bcgsc.ca	37	3	197880139	197880139	+	Missense_Mutation	SNP	A	A	G	rs1820791		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001145248	exon2	c.A218G	p.Q73R	.	.	417	24	395	10	.	.
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559029	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM171B	NM_177454	exon1	c.A129G	p.Q43Q	.	.	82	3	81	0	.	141
FAM208A	23272	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	56667646	56667646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001112736	exon18	c.T3173C	p.M1058T	.	.	26	4	38	0	.	.
FAM22F	54754	hgsc.bcm.edu	37	9	97080944	97080944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM22F	NM_017561	exon7	c.C2074G	p.P692A	.	.	390	4	377	0	.	68
FAM3B	54097	hgsc.bcm.edu;bcgsc.ca	37	21	42720630	42720630	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM3B	NM_058186	exon7	c.T597C	p.P199P	.	.	96	4	150	0	.	90
FAM78A	286336	hgsc.bcm.edu	37	9	134136640	134136640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM78A	NM_033387	exon2	c.A421G	p.T141A	.	.	69	4	76	0	.	91
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33874568	33874568	+	Missense_Mutation	SNP	G	G	A	rs138265873	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM83C	NM_178468	exon4	c.C2014T	p.R672W	.	.	206	62	222	0	G|1.000;A|0.000	92
FAM83D	81610	hgsc.bcm.edu	37	20	37576564	37576564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM83D	NM_030919	exon3	c.T787C	p.S263P	.	.	88	4	77	0	.	93
FANCI	55215	hgsc.bcm.edu	37	15	89804010	89804010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FANCI	NM_001113378	exon4	c.T224C	p.L75S	.	.	93	4	153	0	.	92
FANK1	92565	hgsc.bcm.edu;bcgsc.ca	37	10	127697829	127697829	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FANK1	NM_145235	exon10	c.C966T	p.D322D	.	.	58	5	106	0	.	91
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99038053	99038053	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FARP1	NM_005766	exon8	c.A744T	p.G248G	.	.	39	20	25	0	.	290
FBXL5	26234	hgsc.bcm.edu;bcgsc.ca	37	4	15629615	15629615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FBXL5	NM_012161	exon7	c.A934G	p.M312V	.	.	82	4	86	0	.	226
FBXO4	26272	hgsc.bcm.edu	37	5	41941379	41941379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FBXO4	NM_012176	exon7	c.G1160A	p.R387K	.	.	97	4	112	0	.	227
FCAR	2204	bcgsc.ca	37	19	55399494	55399494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FCAR	NM_133279	exon4	c.A482G	p.E161G	.	.	179	6	203	1	.	92
FGF14	2259	hgsc.bcm.edu	37	13	102568931	102568931	+	Missense_Mutation	SNP	T	T	C	rs202074055		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FGF14	NM_004115	exon1	c.A65G	p.D22G	.	.	230	16	105	0	T|0.992;C|0.008	586
FIP1L1	81608	hgsc.bcm.edu;bcgsc.ca	37	4	54265931	54265931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FIP1L1	NM_030917	exon10	c.A740G	p.E247G	.	.	87	5	109	0	.	1083
FLG	2312	broad.mit.edu	37	1	152284791	152284791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FLG	NM_002016	exon3	c.C2571A	p.H857Q	.	.	674	9	312	1	.	106
FLJ44635	0	hgsc.bcm.edu	37	X	71379912	71379912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FLJ44635	NM_207422	exon2	c.T233C	p.V78A	.	.	99	4	88	0	.	108
FLT1	2321	mdanderson.org	37	13	28877468	28877468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FLT1	NM_002019	exon30	c.T3853C	p.S1285P	.	.	20	3	24	0	.	1406
FLT3	2322	hgsc.bcm.edu	37	13	28608538	28608538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FLT3	NM_004119	exon13	c.T1604C	p.F535S	.	.	90	4	144	0	.	42117
FMN1	342184	hgsc.bcm.edu	37	15	33091107	33091107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FMN1	NM_001103184	exon15	c.A3359G	p.E1120G	.	.	78	4	103	0	.	23
FRG1B	284802	bcgsc.ca	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FRG1B	.	.	.	.	.	.	279	16	255	3	.	22
FRYL	285527	hgsc.bcm.edu;bcgsc.ca	37	4	48545872	48545872	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FRYL	NM_015030	exon44	c.T5544C	p.V1848V	.	.	90	4	68	0	.	69
FYCO1	79443	hgsc.bcm.edu;bcgsc.ca	37	3	46021198	46021198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FYCO1	NM_024513	exon4	c.A287G	p.E96G	.	.	125	5	210	0	.	91
GART	2618	hgsc.bcm.edu	37	21	34882122	34882122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GART	NM_001136005	exon18	c.A2420G	p.K807R	.	.	78	4	58	0	.	91
GAS7	8522	hgsc.bcm.edu	37	17	9843452	9843452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GAS7	NM_201433	exon8	c.A797G	p.Q266R	.	.	85	4	130	0	.	1083
GBP5	115362	hgsc.bcm.edu;bcgsc.ca	37	1	89728392	89728392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GBP5	NM_052942	exon10	c.T1439C	p.L480P	.	.	75	4	102	0	.	91
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40343211	40343211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GHDC	NM_001142623	exon6	c.C907G	p.L303V	.	.	72	34	71	0	.	90
GIGYF2	26058	hgsc.bcm.edu	37	2	233684562	233684562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GIGYF2	NM_001103147	exon23	c.A2459G	p.E820G	.	.	87	6	79	0	.	28
GLI2	2736	bcgsc.ca	37	2	121728164	121728164	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GLI2	NM_005270	exon6	c.T1041C	p.C347C	.	.	134	5	134	0	.	954
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816819	75816819	+	Missense_Mutation	SNP	G	G	C	rs77365041	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GLIPR1L2	NM_152436	exon4	c.G720C	p.K240N	.	.	43	5	64	0	G|0.872;C|0.128	91
GNE	10020	hgsc.bcm.edu	37	9	36246060	36246060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GNE	NM_001128227	exon3	c.A677G	p.K226R	.	.	93	4	81	0	.	115
GOLIM4	27333	hgsc.bcm.edu	37	3	167747641	167747641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GOLIM4	NM_014498	exon10	c.G1360C	p.V454L	.	.	67	4	75	0	.	291
GPAM	57678	hgsc.bcm.edu;bcgsc.ca	37	10	113940243	113940243	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPAM	NM_020918	exon4	c.T213C	p.T71T	.	.	47	4	92	0	.	92
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	.	.	671	5	339	0	A|0.333;C|0.333;G|0.333	91
GPR108	56927	hgsc.bcm.edu	37	19	6731272	6731272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPR108	NM_001080452	exon16	c.A1372G	p.T458A	.	.	134	6	95	0	.	68
GPR162	27239	bcgsc.ca	37	12	6934831	6934831	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPR162	NM_019858	exon3	c.A1050G	p.G350G	.	.	108	5	126	1	.	92
GPR39	2863	broad.mit.edu	37	2	133175110	133175110	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPR39	NM_001508	exon1	c.G495A	p.L165L	.	.	165	4	129	0	.	226
GPRASP1	9737	hgsc.bcm.edu;bcgsc.ca	37	X	101912553	101912553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.T3712C	p.C1238R	.	.	76	4	57	0	.	131
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909698	101909698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.G857T	p.R286M	.	.	80	66	76	0	.	131
GRAMD1A	57655	hgsc.bcm.edu	37	19	35504479	35504479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GRAMD1A	NM_020895	exon9	c.A754G	p.S252G	.	.	90	4	91	0	.	90
GSTCD	79807	hgsc.bcm.edu;bcgsc.ca	37	4	106650634	106650634	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GSTCD	NM_001031720	exon5	c.T1218C	p.P406P	.	.	95	4	96	0	.	92
GYS2	2998	bcgsc.ca	37	12	21712596	21712596	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GYS2	NM_021957	exon9	c.T1218C	p.D406D	.	.	174	6	143	0	.	523
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105244550	105244550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HACE1	NM_020771	exon9	c.G796A	p.E266K	.	.	44	23	114	0	.	663
HACL1	26061	bcgsc.ca	37	3	15621528	15621528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HACL1	NM_012260	exon9	c.A692G	p.E231G	.	.	57	4	116	1	.	90
HAVCR1	26762	hgsc.bcm.edu	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	.	.	304	25	353	0	.	92
HBEGF	1839	hgsc.bcm.edu	37	5	139725515	139725515	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HBEGF	NM_001945	exon2	c.A201G	p.A67A	.	.	124	5	188	0	.	90
HDDC2	51020	hgsc.bcm.edu;bcgsc.ca	37	6	125619942	125619942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HDDC2	NM_016063	exon3	c.T227C	p.V76A	.	.	89	4	131	0	.	90
HECTD1	25831	hgsc.bcm.edu	37	14	31583498	31583498	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HECTD1	NM_015382	exon31	c.A5667G	p.G1889G	.	.	98	4	204	0	.	570
HERC2	8924	ucsc.edu;bcgsc.ca	37	15	28427625	28427625	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HERC2	NM_004667	exon57	c.A8859G	p.S2953S	.	.	44	4	64	0	.	234
HMGXB3	22993	hgsc.bcm.edu	37	5	149390055	149390055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HMGXB3	NM_014983	exon4	c.A694G	p.T232A	.	.	99	4	124	0	.	24
HOMEZ	57594	hgsc.bcm.edu	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HOMEZ	NM_020834	exon2	c.G1593A	p.E531E	.	.	56	11	105	0	.	22
HOXB6	3216	hgsc.bcm.edu	37	17	46673963	46673963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HOXB6	NM_018952	exon4	c.A487G	p.K163E	.	.	85	4	73	0	.	90
HS3ST2	9956	hgsc.bcm.edu	37	16	22826066	22826066	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HS3ST2	NM_006043	exon1	c.T135C	p.G45G	.	.	73	4	54	0	.	516
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15746539	15746539	+	Missense_Mutation	SNP	T	T	C	rs200321727		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HSPA13	NM_006948	exon5	c.A815G	p.Y272C	.	.	37	11	38	0	T|0.999;C|0.000	226
HTR7	3363	broad.mit.edu	37	10	92617259	92617259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HTR7	NM_019860	exon1	c.C170A	p.A57E	.	.	45	4	35	1	.	91
HUWE1	10075	hgsc.bcm.edu	37	X	53565344	53565344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HUWE1	NM_031407	exon77	c.G11950A	p.V3984I	.	.	85	4	92	0	.	280
IARS	3376	hgsc.bcm.edu	37	9	95050074	95050074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IARS	NM_013417	exon4	c.A395G	p.K132R	.	.	136	6	143	0	.	92
IDE	3416	hgsc.bcm.edu;bcgsc.ca	37	10	94274762	94274762	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IDE	NM_004969	exon5	c.A699G	p.E233E	.	.	64	4	108	0	.	92
IFIT5	24138	hgsc.bcm.edu	37	10	91177501	91177501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IFIT5	NM_012420	exon2	c.T545C	p.I182T	.	.	92	4	191	0	.	90
IFIT5	24138	hgsc.bcm.edu	37	10	91177909	91177909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IFIT5	NM_012420	exon2	c.A953G	p.E318G	.	.	95	4	111	0	.	90
IGF1R	3480	hgsc.bcm.edu	37	15	99460002	99460002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGF1R	NM_000875	exon10	c.T2098C	p.C700R	.	.	95	4	150	0	.	1490
IGSF10	285313	broad.mit.edu	37	3	151155760	151155760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGSF10	NM_178822	exon6	c.T6589C	p.S2197P	.	.	145	4	146	0	.	102
IGSF21	84966	hgsc.bcm.edu;bcgsc.ca	37	1	18691796	18691796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGSF21	NM_032880	exon6	c.A620G	p.Q207R	.	.	68	4	135	0	.	156
IKBKAP	8518	hgsc.bcm.edu	37	9	111644428	111644428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IKBKAP	NM_003640	exon30	c.G3262A	p.A1088T	.	.	94	4	93	0	.	318
IL16	3603	hgsc.bcm.edu	37	15	81517943	81517943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IL16	NM_001172128	exon2	c.A203G	p.E68G	.	.	69	4	114	0	.	653
IL1RAPL2	26280	hgsc.bcm.edu;bcgsc.ca	37	X	104478544	104478544	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IL1RAPL2	NM_017416	exon4	c.T399C	p.V133V	.	.	66	4	64	0	.	194
IQCF2	389123	bcgsc.ca	37	3	51895912	51895912	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IQCF2	NM_203424	exon2	c.T57C	p.V19V	.	.	108	4	158	0	.	90
IQCH	64799	hgsc.bcm.edu;bcgsc.ca	37	15	67553702	67553702	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IQCH	NM_022784	exon2	c.A144G	p.T48T	.	.	57	4	81	0	.	94
ITGA1	3672	hgsc.bcm.edu	37	5	52214692	52214692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITGA1	NM_181501	exon16	c.A2119G	p.K707E	.	.	90	5	81	0	.	228
ITIH3	3699	broad.mit.edu;bcgsc.ca	37	3	52842646	52842646	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITIH3	NM_002217	exon22	c.A2622G	p.E874E	.	.	142	6	202	1	.	93
ITPKB	3707	hgsc.bcm.edu	37	1	226923808	226923808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITPKB	NM_002221	exon2	c.G1352A	p.G451D	.	.	84	4	55	0	.	230
KAT6B	23522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76790247	76790247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_012330	exon18	c.A5665G	p.M1889V	.	.	216	73	106	0	.	.
KCNN1	3780	hgsc.bcm.edu	37	19	18108964	18108964	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KCNN1	NM_002248	exon11	c.C1381T	p.Q461X	.	.	59	4	73	0	.	22
KCNQ3	3786	hgsc.bcm.edu	37	8	133492571	133492571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KCNQ3	NM_004519	exon1	c.A209G	p.E70G	.	.	73	4	1	0	.	138
KDM6A	7403	bcgsc.ca	37	X	44938596	44938596	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KDM6A	NM_021140	exon20	c.A3144G	p.R1048R	.	.	159	5	138	0	.	2748
KIAA0754	643314	mdanderson.org	37	1	39879250	39879250	+	Missense_Mutation	SNP	A	A	G	rs783822	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_015038	exon1	c.A3313G	p.T1105A	.	.	161	20	55	3	A|0.667;G|0.333	.
KIAA2013	90231	hgsc.bcm.edu	37	1	11983301	11983301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIAA2013	NM_138346	exon2	c.T1279C	p.S427P	.	.	89	4	161	0	.	91
KIAA2018	205717	hgsc.bcm.edu	37	3	113376107	113376107	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIAA2018	NM_001009899	exon7	c.G4422A	p.Q1474Q	.	.	272	21	96	0	.	93
KIF16B	55614	hgsc.bcm.edu;bcgsc.ca	37	20	16360047	16360047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIF16B	NM_001199865	exon19	c.A2600G	p.E867G	.	.	82	4	74	0	.	291
KIRREL2	84063	hgsc.bcm.edu	37	19	36351240	36351240	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIRREL2	NM_199180	exon6	c.C715T	p.Q239X	.	.	63	4	47	0	.	93
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126071499	126071499	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLF15	NM_014079	exon2	c.C267T	p.G89G	.	.	130	60	64	0	.	91
KLHL24	54800	hgsc.bcm.edu	37	3	183381420	183381420	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLHL24	NM_017644	exon4	c.T1095C	p.I365I	.	.	71	4	95	0	.	91
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136963985	136963985	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLHL3	NM_017415	exon14	c.1591+1G>T	.	.	.	93	42	99	0	.	90
KRTAP29-1	100533177	hgsc.bcm.edu	37	17	39458577	39458577	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001257309	exon1	c.G527C	p.C176S	.	.	63	5	49	0	.	.
LAMC1	3915	bcgsc.ca	37	1	183086458	183086458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LAMC1	NM_002293	exon9	c.A1568G	p.E523G	.	.	142	5	78	0	.	252
LAS1L	81887	hgsc.bcm.edu	37	X	64754435	64754435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LAS1L	NM_031206	exon1	c.T161C	p.V54A	.	.	74	4	73	0	.	196
LCE4A	199834	hgsc.bcm.edu	37	1	152681696	152681696	+	Missense_Mutation	SNP	G	G	T	rs79268808		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LCE4A	NM_178356	exon1	c.G145T	p.G49C	.	.	231	19	120	0	.	90
LHCGR	3973	hgsc.bcm.edu	37	2	48915345	48915345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LHCGR	NM_000233	exon11	c.A1591G	p.I531V	.	.	87	4	113	0	.	589
LILRP2	79166	broad.mit.edu;ucsc.edu	37	19	55221316	55221316	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	.	.	.	87	31	93	0	.	.
LONP2	83752	bcgsc.ca	37	16	48286158	48286158	+	Missense_Mutation	SNP	A	A	G	rs200318773	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LONP2	NM_031490	exon2	c.A350G	p.K117R	.	.	134	5	123	2	A|0.999;C|0.001	90
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936570	62936570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LPHN3	NM_015236	exon23	c.G4354A	p.G1452R	.	.	83	32	90	0	.	508
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141092035	141092035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRP1B	NM_018557	exon79	c.A12210G	p.L4070L	.	.	252	94	288	0	.	311
LRSAM1	90678	bcgsc.ca	37	9	130250008	130250008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRSAM1	NM_001005373	exon18	c.A1313G	p.D438G	.	.	71	4	50	0	.	90
LRTOMT	220074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71819858	71819858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRTOMT	NM_001145308	exon7	c.C763A	p.Q255K	.	.	125	45	108	0	.	68
LSM14B	149986	hgsc.bcm.edu	37	20	60706422	60706422	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LSM14B	NM_144703	exon7	c.T846C	p.A282A	.	.	85	4	99	0	.	22
LYST	1130	broad.mit.edu	37	1	235976312	235976312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LYST	NM_000081	exon4	c.C242G	p.P81R	.	.	535	9	326	0	.	143
MAD2L1BP	9587	hgsc.bcm.edu	37	6	43604135	43604135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAD2L1BP	NM_001003690	exon3	c.A160G	p.K54E	.	.	100	4	82	0	.	90
MAGEB10	139422	hgsc.bcm.edu;bcgsc.ca	37	X	27839847	27839847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAGEB10	NM_182506	exon3	c.A424G	p.T142A	.	.	84	4	113	0	.	130
MAGEH1	28986	bcgsc.ca	37	X	55479291	55479291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAGEH1	NM_014061	exon1	c.T484C	p.F162L	.	.	56	4	69	0	.	132
MAGI1	9223	hgsc.bcm.edu	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAGI1	NM_001033057	exon9	c.G1230A	p.Q410Q	.	.	65	8	64	0	.	661
MAML2	84441	mdanderson.org	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAML2	NM_032427	exon2	c.G1788A	p.Q596Q	.	.	206	45	151	1	C|0.250;T|0.750	850
MAN1B1	11253	bcgsc.ca	37	9	139981586	139981586	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAN1B1	NM_016219	exon1	c.T135C	p.P45P	.	.	113	6	102	0	.	91
MANEA	79694	hgsc.bcm.edu	37	6	96052708	96052708	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MANEA	NM_024641	exon4	c.T660C	p.T220T	.	.	92	4	171	0	.	155
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAPK7	NM_002749	exon5	c.C1502A	p.A501D	.	.	98	10	50	1	.	1402
MASP1	5648	broad.mit.edu	37	3	186980405	186980405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MASP1	NM_139125	exon3	c.T341C	p.M114T	.	.	258	6	289	1	.	94
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	98943556	98943556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MATN2	NM_002380	exon3	c.C518G	p.P173R	.	.	95	18	73	0	.	24
ME1	4199	hgsc.bcm.edu	37	6	84108172	84108172	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ME1	NM_002395	exon3	c.T276C	p.S92S	.	.	99	4	128	0	.	92
MED12	9968	hgsc.bcm.edu	37	X	70357194	70357194	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MED12	NM_005120	exon39	c.T5709C	p.P1903P	.	.	86	4	83	0	.	272
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MEOX2	NM_005924	exon1	c.C228T	p.H76H	.	.	95	15	47	0	.	515
MET	4233	hgsc.bcm.edu	37	7	116371722	116371722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MET	NM_000245	exon3	c.A1201G	p.T401A	.	.	89	4	93	0	.	5874
MKI67	4288	hgsc.bcm.edu	37	10	129907660	129907660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MKI67	NM_002417	exon13	c.A2444G	p.N815S	.	.	95	4	122	0	.	519
MLXIPL	51085	hgsc.bcm.edu	37	7	73011792	73011792	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MLXIPL	NM_032954	exon9	c.T1323C	p.P441P	.	.	89	4	90	0	.	91
MMRN1	22915	hgsc.bcm.edu	37	4	90844418	90844418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MMRN1	NM_007351	exon4	c.A950G	p.D317G	.	.	123	5	118	0	.	94
MROH6	642475	hgsc.bcm.edu	37	8	144650754	144650754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001100878	exon10	c.C1612T	p.R538C	.	.	17	5	1	0	.	.
MRVI1	10335	hgsc.bcm.edu	37	11	10647928	10647928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MRVI1	NM_130385	exon9	c.T953C	p.L318P	.	.	91	4	176	0	.	25
MTHFD2L	441024	hgsc.bcm.edu;bcgsc.ca	37	4	75023925	75023925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MTHFD2L	NM_001144978	exon1	c.A70G	p.S24G	.	.	101	5	36	0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9020072	9020072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MUC16	NM_024690	exon21	c.C37423T	p.R12475W	.	.	247	90	220	0	.	566
MUC21	394263	bcgsc.ca	37	6	30954648	30954648	+	Silent	SNP	G	G	A	rs147486343	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MUC21	NM_001010909	exon2	c.G696A	p.T232T	.	.	156	15	171	3	G|0.993;A|0.007	92
MUC4	4585	broad.mit.edu	37	3	195506007	195506007	+	Silent	SNP	G	G	A	rs71635085		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MUC4	NM_018406	exon2	c.C12444T	p.T4148T	.	.	138	9	129	1	G|1.000;|0.000	90
MYH2	4620	bcgsc.ca	37	17	10426889	10426889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MYH2	NM_017534	exon37	c.T5396C	p.L1799P	.	.	138	5	226	1	.	194
MYH3	4621	hgsc.bcm.edu	37	17	10532990	10532990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MYH3	NM_002470	exon40	c.C5720T	p.A1907V	.	.	79	4	114	0	.	95
MYO1D	4642	hgsc.bcm.edu	37	17	31087321	31087321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MYO1D	NM_015194	exon10	c.T1283C	p.I428T	.	.	116	5	95	0	.	137
NAF1	92345	hgsc.bcm.edu;bcgsc.ca	37	4	164058390	164058390	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NAF1	NM_138386	exon6	c.A891G	p.S297S	.	.	69	4	144	0	.	70
NAT10	55226	hgsc.bcm.edu	37	11	34145347	34145347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NAT10	NM_024662	exon10	c.A953G	p.N318S	.	.	99	4	178	0	.	92
NBPF3	84224	bcgsc.ca	37	1	21801440	21801440	+	Missense_Mutation	SNP	C	C	T	rs142193512	byfrequency;alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NBPF3	NM_032264	exon8	c.C988T	p.P330S	.	.	61	4	85	0	C|1.000;G|0.000	92
NCL	4691	hgsc.bcm.edu	37	2	232325414	232325414	+	Missense_Mutation	SNP	T	T	A	rs199689485		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NCL	NM_005381	exon4	c.A777T	p.E259D	.	.	206	18	209	0	.	230
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124824953	124824953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NCOR2	NM_006312	exon38	c.C5375T	p.S1792F	.	.	51	4	90	0	.	229
NECAB3	63941	hgsc.bcm.edu	37	20	32246573	32246573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NECAB3	NM_031232	exon9	c.T947C	p.L316P	.	.	149	6	158	0	.	91
NEDD4	4734	hgsc.bcm.edu;bcgsc.ca	37	15	56207944	56207944	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NEDD4	NM_198400	exon1	c.A1086G	p.R362R	.	.	59	4	67	0	.	723
NEU4	129807	hgsc.bcm.edu	37	2	242756278	242756278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NEU4	NM_001167599	exon3	c.G430T	p.D144Y	.	.	38	18	2	0	.	44
NF1	4763	bcgsc.ca	37	17	29653048	29653048	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NF1	NM_001042492	exon37	c.T5046C	p.C1682C	.	.	131	5	119	0	.	3353
NHSL1	57224	hgsc.bcm.edu;bcgsc.ca	37	6	138753581	138753581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NHSL1	NM_020464	exon5	c.A1913G	p.H638R	.	.	75	4	128	0	.	68
NIN	51199	bcgsc.ca	37	14	51194424	51194424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NIN	NM_182944	exon30	c.A6124G	p.R2042G	.	.	74	5	122	1	.	229
NKAP	79576	hgsc.bcm.edu	37	X	119068493	119068493	+	Missense_Mutation	SNP	T	T	C	rs199876887		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NKAP	NM_024528	exon5	c.A701G	p.K234R	.	.	97	4	96	0	.	132
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	120458918	120458919	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NOTCH2	NM_024408	exon34	c.6427_6428insTT	p.E2143fs	.	.	216	49	217	0	.	1441
NOTCH4	4855	hgsc.bcm.edu	37	6	32187547	32187547	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NOTCH4	NM_004557	exon8	c.T1332C	p.S444S	.	.	118	5	151	0	.	1321
NPLOC4	55666	broad.mit.edu	37	17	79526398	79526398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NPLOC4	NM_017921	exon17	c.G1714A	p.V572I	.	.	288	5	308	0	.	24
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	233	36	235	0	T|0.024;A|0.976	90
NSMCE4A	54780	bcgsc.ca	37	10	123722802	123722802	+	Silent	SNP	T	T	C	rs200510933		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NSMCE4A	NM_017615	exon6	c.A795G	p.K265K	.	.	57	4	88	0	T|1.000;C|0.000	90
NT5C3A	0	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33054388	33054388	+	Missense_Mutation	SNP	T	T	C	rs79747830	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001002010	exon9	c.A965G	p.D322G	.	.	43	12	56	0	T|0.969;C|0.031	.
NT5DC3	51559	hgsc.bcm.edu	37	12	104208807	104208807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NT5DC3	NM_001031701	exon2	c.T301C	p.F101L	.	.	98	5	183	0	.	228
NUP85	79902	hgsc.bcm.edu;bcgsc.ca	37	17	73214301	73214301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NUP85	NM_024844	exon7	c.T497C	p.L166P	.	.	110	6	115	0	.	205
NYNRIN	57523	hgsc.bcm.edu;bcgsc.ca	37	14	24885708	24885708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.A4753G	p.S1585G	.	.	55	4	83	0	.	3
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24884365	24884365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.C3410T	p.A1137V	.	.	15	12	36	0	.	3
OCRL	4952	hgsc.bcm.edu;bcgsc.ca	37	X	128695175	128695175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OCRL	NM_000276	exon10	c.A844G	p.S282G	.	.	112	5	111	0	.	206
OCSTAMP	128506	hgsc.bcm.edu	37	20	45174327	45174327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_080721	exon2	c.T686C	p.V229A	.	.	87	5	86	0	.	.
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161989875	161989875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OLFML2B	NM_015441	exon2	c.G272T	p.R91M	.	.	223	49	127	0	.	69
OR10J1	26476	broad.mit.edu	37	1	159410062	159410062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR10J1	NM_012351	exon1	c.A514G	p.T172A	.	.	562	7	274	1	.	69
OR11H6	122748	hgsc.bcm.edu	37	14	20692756	20692756	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR11H6	NM_001004480	exon1	c.C888T	p.Y296Y	.	.	97	4	117	0	.	71
OR4F15	390649	broad.mit.edu	37	15	102358548	102358548	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR4F15	NM_001001674	exon1	c.T159C	p.A53A	.	.	207	5	309	0	.	68
OR4K14	122740	bcgsc.ca	37	14	20483222	20483222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR4K14	NM_001004712	exon1	c.T131C	p.L44P	.	.	131	5	115	0	.	115
OR5H6	79295	hgsc.bcm.edu	37	3	97983495	97983495	+	Missense_Mutation	SNP	A	A	C	rs149984587	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR5H6	NM_001005479	exon1	c.A367C	p.T123P	.	.	193	6	179	0	A|0.999;C|0.001	137
OTX2	5015	hgsc.bcm.edu	37	14	57268484	57268484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OTX2	NM_001270525	exon3	c.A863T	p.Q288L	.	.	78	4	149	0	.	205
OVOL2	58495	hgsc.bcm.edu;bcgsc.ca	37	20	18022238	18022238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OVOL2	NM_021220	exon3	c.T451C	p.F151L	.	.	123	5	114	0	.	68
P4HTM	54681	hgsc.bcm.edu	37	3	49041657	49041657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	P4HTM	NM_177938	exon5	c.A851G	p.E284G	.	.	35	4	96	0	.	205
PAPOLB	56903	hgsc.bcm.edu	37	7	4900926	4900926	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PAPOLB	NM_020144	exon1	c.A516G	p.A172A	.	.	54	4	67	0	.	493
PASD1	139135	hgsc.bcm.edu	37	X	150832684	150832684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PASD1	NM_173493	exon11	c.A935G	p.D312G	.	.	100	4	131	0	.	133
PCDH12	51294	hgsc.bcm.edu	37	5	141324954	141324954	+	Missense_Mutation	SNP	A	A	T	rs200120809		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PCDH12	NM_016580	exon4	c.T3547A	p.C1183S	.	.	87	16	86	0	.	93
PCLO	27445	hgsc.bcm.edu;bcgsc.ca	37	7	82580361	82580361	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PCLO	NM_014510	exon6	c.T9543C	p.V3181V	.	.	100	4	90	0	.	29
PELP1	27043	hgsc.bcm.edu	37	17	4575334	4575334	+	Silent	SNP	T	T	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PELP1	NM_014389	exon16	c.A2952C	p.P984P	.	.	29	5	80	0	.	24
PHLPP2	23035	hgsc.bcm.edu;bcgsc.ca	37	16	71683278	71683278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PHLPP2	NM_015020	exon18	c.A3487G	p.S1163G	.	.	69	4	72	0	.	91
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204401382	204401382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3C2B	NM_002646	exon28	c.C4101G	p.I1367M	.	.	360	81	184	0	.	1310
PIK3R4	30849	hgsc.bcm.edu;bcgsc.ca	37	3	130449233	130449233	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3R4	NM_014602	exon5	c.T1504C	p.L502L	.	.	86	4	85	0	.	1471
PIWIL2	55124	hgsc.bcm.edu	37	8	22172606	22172606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIWIL2	NM_001135721	exon18	c.T2156C	p.L719P	.	.	92	4	158	0	.	91
PKNOX1	5316	hgsc.bcm.edu	37	21	44441414	44441414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PKNOX1	NM_004571	exon8	c.T722C	p.L241P	.	.	100	4	100	0	.	153
PLEKHA4	57664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49357343	49357343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLEKHA4	NM_020904	exon11	c.C1097T	p.T366M	.	.	121	59	106	0	.	227
PLEKHG1	57480	hgsc.bcm.edu	37	6	151161732	151161732	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLEKHG1	NM_001029884	exon17	c.A3858G	p.E1286E	.	.	97	4	157	0	.	92
PLXNB2	23654	hgsc.bcm.edu	37	22	50720335	50720335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNB2	NM_012401	exon20	c.A3293G	p.E1098G	.	.	39	4	38	0	.	211
PLXNB3	5365	hgsc.bcm.edu	37	X	153040831	153040831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNB3	NM_001163257	exon26	c.A4376G	p.H1459R	.	.	88	4	43	0	.	130
PLXNC1	10154	hgsc.bcm.edu;bcgsc.ca	37	12	94631455	94631455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNC1	NM_005761	exon10	c.T1996C	p.S666P	.	.	55	4	71	0	.	92
PNPLA2	57104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	822492	822492	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PNPLA2	NM_020376	exon5	c.T582C	p.C194C	.	.	83	54	139	3	.	90
PODXL2	50512	hgsc.bcm.edu	37	3	127379378	127379378	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PODXL2	NM_015720	exon3	c.A507G	p.E169E	.	.	72	4	69	0	.	91
POLE2	5427	hgsc.bcm.edu;bcgsc.ca	37	14	50118040	50118040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	POLE2	NM_001197331	exon16	c.A1267G	p.M423V	.	.	83	4	159	0	.	229
POLL	27343	hgsc.bcm.edu	37	10	103347044	103347044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	POLL	NM_013274	exon2	c.T74C	p.L25P	.	.	86	4	125	0	.	227
PPCDC	60490	bcgsc.ca	37	15	75320771	75320771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPCDC	NM_021823	exon2	c.T112C	p.S38P	.	.	102	5	182	1	.	90
PPM1G	5496	hgsc.bcm.edu	37	2	27608639	27608639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPM1G	NM_177983	exon4	c.A384T	p.K128N	.	.	166	26	149	0	.	227
PPM1G	5496	hgsc.bcm.edu	37	2	27608641	27608641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPM1G	NM_177983	exon4	c.A382G	p.K128E	.	.	168	25	152	0	.	227
PPP1R12A	4659	hgsc.bcm.edu;bcgsc.ca	37	12	80266678	80266678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R12A	NM_002480	exon2	c.T278C	p.V93A	.	.	74	4	122	0	.	273
PPP1R13B	23368	hgsc.bcm.edu;bcgsc.ca	37	14	104206859	104206859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R13B	NM_015316	exon12	c.T1894C	p.S632P	.	.	75	5	114	0	.	227
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93611837	93611837	+	Silent	SNP	A	A	G	rs199469491	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PROS1	NM_000313	exon10	c.T1095C	p.N365N	.	.	421	172	371	0	A|0.999;C|0.001	153
PRR5	55615	hgsc.bcm.edu	37	22	45110469	45110469	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PRR5	NM_001017528	exon3	c.108-2A>G	.	.	.	107	5	82	0	.	23
PRRT4	401399	hgsc.bcm.edu	37	7	127992597	127992597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001174164	exon6	c.A1013G	p.E338G	.	.	94	4	74	0	.	.
PSMD12	5718	hgsc.bcm.edu	37	17	65337110	65337110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PSMD12	NM_002816	exon11	c.A1220G	p.D407G	.	.	94	4	89	0	.	90
PSMD13	5719	hgsc.bcm.edu;bcgsc.ca	37	11	248788	248788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PSMD13	NM_175932	exon6	c.A587G	p.Q196R	.	.	72	4	119	0	.	515
PTAR1	375743	hgsc.bcm.edu	37	9	72356709	72356709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTAR1	NM_001099666	exon3	c.A322G	p.R108G	.	.	98	5	85	0	.	69
PTK7	5754	hgsc.bcm.edu	37	6	43097478	43097478	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTK7	NM_001270398	exon3	c.T405C	p.G135G	.	.	85	4	134	0	.	1493
PTPN4	5775	bcgsc.ca	37	2	120723179	120723179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTPN4	NM_002830	exon25	c.A2516G	p.N839S	.	.	155	5	127	0	.	228
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8376068	8376068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTPRM	NM_001105244	exon25	c.A3196G	p.I1066V	.	.	67	4	68	0	.	228
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32977609	32977609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	QSER1	NM_001076786	exon7	c.A4306G	p.K1436E	.	.	71	4	115	0	.	95
RAD23A	5886	hgsc.bcm.edu	37	19	13059162	13059162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RAD23A	NM_005053	exon3	c.T406C	p.S136P	.	.	76	4	79	0	.	227
RANBP3L	202151	hgsc.bcm.edu	37	5	36301506	36301506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RANBP3L	NM_001161429	exon1	c.C13T	p.P5S	.	.	75	4	86	0	.	91
RASA1	5921	broad.mit.edu;bcgsc.ca	37	5	86665656	86665668	+	Frame_Shift_Del	DEL	AGCACTTTAGTGA	AGCACTTTAGTGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	AGCACTTTAGTGA	AGCACTTTAGTGA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASA1	NM_002890	exon12	c.1637_1649del	p.546_550del	.	.	143	12	188	0	.	661
RASA1	5921	hgsc.bcm.edu	37	5	86665661	86665661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASA1	NM_002890	exon12	c.T1642A	p.F548I	.	.	154	10	203	0	.	661
RASEF	158158	hgsc.bcm.edu;bcgsc.ca	37	9	85627416	85627416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASEF	NM_152573	exon5	c.A776G	p.Q259R	.	.	77	4	74	0	.	280
REG3G	130120	bcgsc.ca	37	2	79253285	79253285	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	REG3G	NM_198448	exon2	c.T66C	p.C22C	.	.	124	5	138	1	.	90
RELN	5649	hgsc.bcm.edu;bcgsc.ca	37	7	103162472	103162472	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RELN	NM_173054	exon48	c.T7665C	p.S2555S	.	.	75	4	57	0	.	574
RFC2	5982	hgsc.bcm.edu	37	7	73646540	73646540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RFC2	NM_181471	exon11	c.G961A	p.G321R	.	.	91	4	77	0	.	229
RIOK2	55781	hgsc.bcm.edu	37	5	96514829	96514829	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RIOK2	NM_001159749	exon2	c.A135G	p.K45K	.	.	48	4	51	0	.	419
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74169787	74169787	+	Missense_Mutation	SNP	C	C	T	rs144334591		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RNF157	NM_052916	exon3	c.G292A	p.V98I	.	.	131	62	152	0	C|1.000;T|0.000	228
RPN2	6185	hgsc.bcm.edu	37	20	35865012	35865012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RPN2	NM_002951	exon16	c.A1783G	p.T595A	.	.	111	5	126	0	.	93
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23909856	23909856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SACS	NM_014363	exon10	c.A8159G	p.D2720G	.	.	72	4	106	0	.	298
SCAP	22937	broad.mit.edu	37	3	47467567	47467567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SCAP	NM_012235	exon7	c.A830G	p.K277R	.	.	56	4	103	2	.	91
SCAPER	49855	hgsc.bcm.edu;bcgsc.ca	37	15	77059425	77059425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SCAPER	NM_020843	exon10	c.T1253C	p.M418T	.	.	76	4	155	0	.	137
SCRN3	79634	hgsc.bcm.edu	37	2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	rs74729826	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SCRN3	NM_024583	exon8	c.T1251G	p.N417K	.	.	261	19	267	0	T|0.842;G|0.157	91
SEC16A	9919	hgsc.bcm.edu	37	9	139358965	139358965	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_014866	exon9	c.T4353C	p.C1451C	.	.	78	4	78	0	.	.
SEC31B	25956	hgsc.bcm.edu	37	10	102256018	102256018	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SEC31B	NM_015490	exon18	c.T2307C	p.A769A	.	.	96	4	127	0	.	91
SENP6	26054	hgsc.bcm.edu	37	6	76388329	76388329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SENP6	NM_015571	exon15	c.A1879G	p.S627G	.	.	99	4	120	0	.	660
SEPT4	5414	hgsc.bcm.edu;bcgsc.ca	37	17	56603141	56603141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SEPT4	NM_001256782	exon5	c.A498G	p.G166G	.	.	58	4	80	0	.	68
SERPINI1	5274	hgsc.bcm.edu	37	3	167506954	167506954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SERPINI1	NM_005025	exon2	c.A38G	p.Q13R	.	.	75	4	67	0	.	226
SETD1A	9739	hgsc.bcm.edu	37	16	30978231	30978231	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SETD1A	NM_014712	exon9	c.A2532G	p.Q844Q	.	.	80	4	82	0	.	93
SGK3	23678	hgsc.bcm.edu;bcgsc.ca	37	8	67752280	67752280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGK3	NM_001033578	exon11	c.A784G	p.R262G	.	.	75	4	85	0	.	1003
SGOL2	151246	hgsc.bcm.edu;bcgsc.ca	37	2	201437542	201437542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGOL2	NM_001160046	exon7	c.A2473G	p.I825V	.	.	119	5	116	0	.	94
SHROOM3	57619	hgsc.bcm.edu	37	4	77663055	77663055	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SHROOM3	NM_020859	exon5	c.T3729C	p.S1243S	.	.	153	8	148	0	.	93
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_207371	exon4	c.G1266A	p.E422E	.	.	93	4	65	0	.	.
SKIV2L	6499	hgsc.bcm.edu	37	6	31931312	31931312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SKIV2L	NM_006929	exon14	c.C1526T	p.S509F	.	.	102	5	136	0	.	290
SLC12A3	6559	hgsc.bcm.edu	37	16	56913123	56913123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC12A3	NM_001126108	exon10	c.T1319C	p.L440P	.	.	79	4	109	0	.	155
SLC17A6	57084	hgsc.bcm.edu;bcgsc.ca	37	11	22381052	22381052	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC17A6	NM_020346	exon4	c.A552G	p.R184R	.	.	96	4	139	0	.	580
SLC22A3	6581	hgsc.bcm.edu	37	6	160857848	160857848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC22A3	NM_021977	exon6	c.T1012C	p.F338L	.	.	100	4	130	0	.	517
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19698204	19698204	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC24A3	NM_020689	exon16	c.C1752T	p.S584S	.	.	241	103	235	0	.	91
SLC26A5	375611	hgsc.bcm.edu	37	7	103050911	103050911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC26A5	NM_206883	exon7	c.T656C	p.V219A	.	.	113	5	104	0	.	91
SLC7A13	157724	hgsc.bcm.edu;bcgsc.ca	37	8	87242258	87242258	+	Silent	SNP	A	A	G	rs141043236	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC7A13	NM_138817	exon1	c.T249C	p.F83F	.	.	87	4	53	0	A|0.996;G|0.004	90
SLCO1B3	28234	hgsc.bcm.edu;bcgsc.ca	37	12	21068948	21068948	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLCO1B3	NM_019844	exon16	c.T1876C	p.L626L	.	.	58	5	59	0	.	155
SLFNL1	200172	hgsc.bcm.edu	37	1	41481866	41481866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLFNL1	NM_144990	exon5	c.A1136T	p.K379M	.	.	261	12	263	0	.	91
SLIT2	9353	broad.mit.edu;bcgsc.ca	37	4	20525466	20525466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLIT2	NM_004787	exon13	c.A1214G	p.D405G	.	.	270	9	175	0	.	521
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905987	144905987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLITRK2	NM_001144005	exon5	c.G2044A	p.G682S	.	.	51	43	57	0	.	136
SLITRK6	84189	hgsc.bcm.edu	37	13	86370190	86370190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLITRK6	NM_032229	exon2	c.G454A	p.E152K	.	.	72	4	124	0	.	137
SLMAP	7871	hgsc.bcm.edu	37	3	57846497	57846497	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLMAP	NM_007159	exon8	c.A759G	p.T253T	.	.	115	5	158	0	.	90
SMARCA2	6595	hgsc.bcm.edu	37	9	2039776	2039776	+	Silent	SNP	A	A	G	rs13296987	bycluster;byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMARCA2	NM_139045	exon4	c.A666G	p.Q222Q	.	.	105	6	108	0	A|0.992;G|0.008	653
SMARCA2	6595	hgsc.bcm.edu	37	9	2039779	2039779	+	Silent	SNP	G	G	A	rs62639301	bycluster;byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMARCA2	NM_139045	exon4	c.G669A	p.Q223Q	.	.	103	9	107	0	G|0.993;A|0.007	653
SMARCA2	6595	hgsc.bcm.edu	37	9	2039815	2039815	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMARCA2	NM_139045	exon4	c.G705A	p.Q235Q	.	.	97	6	94	0	.	653
SMG6	23293	hgsc.bcm.edu	37	17	2203182	2203182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMG6	NM_017575	exon2	c.A865G	p.R289G	.	.	90	4	135	0	.	228
SMIM9	100132963	hgsc.bcm.edu	37	X	154057846	154057846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001162936	exon4	c.T236C	p.L79P	.	.	170	7	74	0	.	.
SMOX	54498	hgsc.bcm.edu	37	20	4162577	4162577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMOX	NM_175839	exon4	c.A563G	p.E188G	.	.	92	6	104	0	.	153
SNAP91	9892	hgsc.bcm.edu;bcgsc.ca	37	6	84371275	84371275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNAP91	NM_001242794	exon5	c.A398G	p.E133G	.	.	72	4	134	0	.	23
SNX3	8724	hgsc.bcm.edu;bcgsc.ca	37	6	108544209	108544209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNX3	NM_003795	exon2	c.G203A	p.R68K	.	.	50	4	71	0	.	226
SORCS3	22986	hgsc.bcm.edu	37	10	106865182	106865182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SORCS3	NM_014978	exon7	c.A1121G	p.Q374R	.	.	92	4	167	0	.	99
SOWAHD	347454	hgsc.bcm.edu	37	X	118893082	118893082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001105576	exon1	c.T452C	p.V151A	.	.	54	4	26	0	.	.
SPTB	6710	ucsc.edu	37	14	65239594	65239594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SPTB	NM_001024858	exon25	c.T5257C	p.F1753L	.	.	47	4	93	1	.	100
SRGAP3	9901	hgsc.bcm.edu	37	3	9106232	9106232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SRGAP3	NM_014850	exon5	c.A520G	p.S174G	.	.	101	5	180	0	.	344
SRRM1	10250	hgsc.bcm.edu;bcgsc.ca	37	1	24997900	24997900	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SRRM1	NM_005839	exon16	c.A2424G	p.G808G	.	.	66	4	100	0	.	93
ST6GALNAC2	10610	hgsc.bcm.edu	37	17	74562230	74562230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ST6GALNAC2	NM_006456	exon9	c.A1081G	p.R361G	.	.	86	4	94	0	.	90
STAB2	55576	hgsc.bcm.edu	37	12	104157304	104157304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STAB2	NM_017564	exon68	c.A7523G	p.K2508R	.	.	92	4	156	0	.	104
STAM	8027	bcgsc.ca	37	10	17726878	17726878	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STAM	NM_003473	exon4	c.A249G	p.E83E	.	.	161	5	100	0	.	154
STARD8	9754	hgsc.bcm.edu;bcgsc.ca	37	X	67937131	67937131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STARD8	NM_001142503	exon6	c.T375C	p.S125S	.	.	78	4	96	0	.	196
STC1	6781	bcgsc.ca	37	8	23702326	23702326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STC1	NM_003155	exon4	c.A701G	p.D234G	.	.	129	5	225	1	.	94
STK17B	9262	hgsc.bcm.edu;bcgsc.ca	37	2	197021354	197021354	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STK17B	NM_004226	exon3	c.A144G	p.R48R	.	.	98	4	102	0	.	334
STRN3	29966	hgsc.bcm.edu	37	14	31425396	31425396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STRN3	NM_001083893	exon2	c.A335G	p.K112R	.	.	93	4	148	0	.	226
STXBP1	6812	bcgsc.ca	37	9	130416055	130416055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STXBP1	NM_001032221	exon3	c.T149C	p.I50T	.	.	176	6	160	0	.	91
SUMO1	7341	bcgsc.ca	37	2	203084815	203084815	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SUMO1	NM_003352	exon2	c.A27G	p.S9S	.	.	217	6	185	0	.	226
SUSD4	55061	broad.mit.edu	37	1	223438060	223438060	+	Silent	SNP	G	G	A	rs147182028	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SUSD4	NM_017982	exon5	c.C636T	p.P212P	.	.	98	4	68	1	G|0.998;A|0.002	68
SYCP3	50511	hgsc.bcm.edu	37	12	102122736	102122736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYCP3	NM_001177949	exon9	c.T680C	p.V227A	.	.	71	4	118	0	.	90
SYNE1	23345	bcgsc.ca	37	6	152702379	152702379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE1	NM_033071	exon56	c.A8792G	p.Q2931R	.	.	62	4	99	0	.	607
SYNE1	23345	hgsc.bcm.edu;bcgsc.ca	37	6	152763360	152763360	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE1	NM_033071	exon31	c.A3879G	p.S1293S	.	.	73	4	107	0	.	607
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64641759	64641759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE2	NM_182914	exon95	c.A17333G	p.E5778G	.	.	59	4	96	0	.	164
TAF2	6873	bcgsc.ca	37	8	120744396	120744396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TAF2	NM_003184	exon26	c.T3368C	p.M1123T	.	.	177	5	118	0	.	274
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19186095	19186095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TAS1R2	NM_152232	exon1	c.G60C	p.E20D	.	.	135	90	186	0	.	93
TBP	6908	hgsc.bcm.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TBP	NM_003194	exon3	c.G192A	p.Q64Q	.	.	49	5	87	0	.	91
TCF3	6929	hgsc.bcm.edu	37	19	1619348	1619348	+	Silent	SNP	G	G	A	rs1052696	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TCF3	NM_003200	exon15	c.C1293T	p.G431G	.	.	14	7	0	0	G|0.903;A|0.097	721
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TCF3	NM_003200	exon15	c.G1291A	p.G431S	.	.	14	7	0	0	C|0.901;T|0.099	721
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167689611	167689611	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001122679	exon29	c.C8094G	p.A2698A	.	.	63	26	60	0	.	.
TEP1	7011	hgsc.bcm.edu;bcgsc.ca	37	14	20859791	20859791	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEP1	NM_007110	exon13	c.A2064G	p.A688A	.	.	72	4	149	0	.	95
TESK2	10420	hgsc.bcm.edu	37	1	45811552	45811552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TESK2	NM_007170	exon10	c.A994G	p.R332G	.	.	110	5	104	0	.	624
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56638968	56638968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEX14	NM_001201457	exon30	c.A4208G	p.H1403R	.	.	109	5	114	0	.	810
TLN1	7094	hgsc.bcm.edu	37	9	35700292	35700292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TLN1	NM_006289	exon49	c.A6556G	p.T2186A	.	.	100	4	138	0	.	609
TM9SF2	9375	hgsc.bcm.edu	37	13	100172292	100172292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TM9SF2	NM_004800	exon3	c.T242C	p.F81S	.	.	86	4	75	0	.	91
TMCC1	23023	hgsc.bcm.edu	37	3	129546658	129546658	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMCC1	NM_001017395	exon3	c.A564G	p.G188G	.	.	80	5	58	0	.	91
TMEFF2	23671	hgsc.bcm.edu;bcgsc.ca	37	2	193056689	193056689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMEFF2	NM_016192	exon2	c.T199C	p.F67L	.	.	91	4	86	0	.	524
TMEM106C	79022	hgsc.bcm.edu	37	12	48359893	48359893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMEM106C	NM_001143843	exon5	c.T433C	p.S145P	.	.	94	4	122	0	.	90
TMF1	7110	hgsc.bcm.edu;bcgsc.ca	37	3	69079080	69079080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMF1	NM_007114	exon11	c.A2480G	p.Q827R	.	.	77	4	132	0	.	90
TNRC6A	27327	hgsc.bcm.edu	37	16	24788434	24788434	+	Missense_Mutation	SNP	C	C	A	rs11644562		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TNRC6A	NM_014494	exon5	c.C344A	p.P115Q	.	.	43	19	39	0	C|0.898;A|0.102	92
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579349	7579349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	TP53,brain,glioma,-1	TP53	NM_000546	exon4	c.T338G	p.F113C	.	.	137	84	200	0	.	70225
TRIM16L	147166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18638692	18638692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIM16L	NM_001037330	exon5	c.G966T	p.K322N	.	.	182	74	161	0	.	90
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIM52	NM_032765	exon1	c.A375G	p.E125E	.	.	150	9	151	0	T|0.991;C|0.009	90
TRIOBP	11078	hgsc.bcm.edu	37	22	38119756	38119756	+	Missense_Mutation	SNP	A	A	G	rs77530465	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIOBP	NM_001039141	exon7	c.A1193G	p.Q398R	.	.	101	8	126	0	.	136
TRIP12	9320	bcgsc.ca	37	2	230659905	230659905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIP12	NM_004238	exon25	c.A3733G	p.T1245A	.	.	76	4	61	0	.	572
TRNT1	51095	hgsc.bcm.edu;bcgsc.ca	37	3	3189269	3189269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRNT1	NM_182916	exon7	c.T938C	p.L313S	.	.	102	5	148	0	.	90
TRUB1	142940	bcgsc.ca	37	10	116698049	116698049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRUB1	NM_139169	exon1	c.T37C	p.S13P	.	.	133	5	198	1	.	90
TSHZ2	128553	hgsc.bcm.edu;bcgsc.ca	37	20	51872639	51872639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TSHZ2	NM_173485	exon2	c.A2642G	p.E881G	.	.	86	4	104	0	.	232
TTN	7273	hgsc.bcm.edu	37	2	179628973	179628973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TTN	NM_001267550	exon43	c.A10045G	p.T3349A	.	.	93	6	123	0	.	636
TUBGCP2	10844	hgsc.bcm.edu	37	10	135111545	135111545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TUBGCP2	NM_001256617	exon5	c.T527C	p.I176T	.	.	100	5	222	0	.	90
TYK2	7297	broad.mit.edu	37	19	10468681	10468681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TYK2	NM_003331	exon16	c.A2309G	p.E770G	.	.	154	5	135	0	.	1009
UBE2D1	7321	hgsc.bcm.edu	37	10	60123367	60123367	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UBE2D1	NM_001204880	exon3	c.7-2A>G	.	.	.	111	5	76	0	.	228
UBR1	197131	bcgsc.ca	37	15	43322181	43322181	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UBR1	NM_174916	exon21	c.C2340T	p.P780P	.	.	73	4	121	0	.	91
UGGT1	56886	hgsc.bcm.edu	37	2	128930206	128930206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UGGT1	NM_020120	exon29	c.A3164G	p.K1055R	.	.	97	4	83	0	.	91
UNC13C	440279	bcgsc.ca	37	15	54914609	54914609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UNC13C	NM_001080534	exon29	c.C6191T	p.T2064I	.	.	53	4	81	0	.	51
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UPF3A	NM_080687	exon2	c.C271T	p.L91L	.	.	129	7	53	0	.	91
UPF3A	65110	broad.mit.edu	37	13	115064427	115064427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UPF3A	NM_023011	exon8	c.T959C	p.V320A	.	.	548	8	419	0	.	91
USP15	9958	hgsc.bcm.edu;bcgsc.ca	37	12	62790141	62790141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP15	NM_001252078	exon20	c.T2637C	p.A879A	.	.	75	6	124	0	.	1084
USP19	10869	bcgsc.ca	37	3	49155394	49155394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP19	NM_001199160	exon3	c.A284G	p.E95G	.	.	48	4	88	0	.	663
USP36	57602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76798437	76798437	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP36	NM_025090	exon17	c.C2991T	p.S997S	.	.	99	39	115	0	.	659
USP47	55031	hgsc.bcm.edu;bcgsc.ca	37	11	11941963	11941963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP47	NM_017944	exon9	c.G936A	p.M312I	.	.	58	4	102	0	.	660
USP7	7874	hgsc.bcm.edu	37	16	9009382	9009382	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP7	NM_003470	exon9	c.T907C	p.L303L	.	.	104	5	132	0	.	661
USP8	9101	hgsc.bcm.edu	37	15	50791193	50791193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP8	NM_001128610	exon20	c.T3265C	p.S1089P	.	.	77	4	167	0	.	658
USP9X	8239	hgsc.bcm.edu;bcgsc.ca	37	X	41088999	41088999	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP9X	NM_001039591	exon43	c.A7398G	p.T2466T	.	.	108	5	79	0	.	563
VEZF1	7716	bcgsc.ca	37	17	56056604	56056604	+	Silent	SNP	T	T	C	rs138088904	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VEZF1	NM_007146	exon5	c.A1047G	p.Q349Q	.	.	212	7	157	2	T|0.999;C|0.001	136
VPS13A	23230	hgsc.bcm.edu	37	9	79834895	79834895	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VPS13A	NM_001018038	exon11	c.C780T	p.A260A	.	.	75	4	93	0	.	161
VWA2	340706	hgsc.bcm.edu;bcgsc.ca	37	10	116045937	116045937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VWA2	NM_001272046	exon11	c.A1237G	p.I413V	.	.	72	4	115	0	.	156
WDHD1	11169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55408242	55408242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDHD1	NM_007086	exon26	c.A3356G	p.Q1119R	.	.	82	51	117	1	.	91
WDR18	57418	hgsc.bcm.edu	37	19	985884	985884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDR18	NM_024100	exon2	c.T230C	p.I77T	.	.	96	4	98	0	.	91
WDR36	134430	bcgsc.ca	37	5	110441005	110441005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDR36	NM_139281	exon10	c.A1207G	p.T403A	.	.	108	4	85	0	.	92
WDR65	149465	hgsc.bcm.edu	37	1	43649297	43649297	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDR65	NM_001195831	exon4	c.T510C	p.C170C	.	.	119	5	87	0	.	91
WNK1	65125	bcgsc.ca	37	12	999673	999673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WNK1	NM_001184985	exon22	c.A6283G	p.K2095E	.	.	139	5	209	0	.	916
WSB1	26118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	25630657	25630657	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WSB1	NM_015626	exon3	c.T474A	p.Y158X	.	.	90	34	115	0	.	226
XIAP	331	hgsc.bcm.edu	37	X	123020184	123020184	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	XIAP	NM_001204401	exon2	c.T672C	p.F224F	.	.	90	4	60	0	.	1084
XPO6	23214	hgsc.bcm.edu	37	16	28124248	28124248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	XPO6	NM_015171	exon16	c.T2128C	p.S710P	.	.	88	4	66	0	.	227
XRCC6P5	0	bcgsc.ca	37	X	98975507	98975507	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	.	.	.	39	4	51	0	.	.
YIPF6	286451	hgsc.bcm.edu;bcgsc.ca	37	X	67731743	67731743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	YIPF6	NM_173834	exon2	c.A110G	p.E37G	.	.	50	4	47	0	.	130
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100334504	100334504	+	RNA	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZAN	.	.	.	.	.	.	101	45	86	0	.	142
ZBTB41	360023	hgsc.bcm.edu;bcgsc.ca	37	1	197169179	197169179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB41	NM_194314	exon1	c.T425C	p.F142S	.	.	83	4	42	0	.	92
ZBTB43	23099	bcgsc.ca	37	9	129595871	129595871	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB43	NM_001135776	exon2	c.T1083C	p.A361A	.	.	48	4	66	0	.	91
ZBTB48	3104	bcgsc.ca	37	1	6646764	6646764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB48	NM_005341	exon5	c.T1054C	p.C352R	.	.	55	5	82	0	.	514
ZBTB6	10773	hgsc.bcm.edu	37	9	125673934	125673934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB6	NM_006626	exon2	c.A418G	p.T140A	.	.	55	4	75	0	.	90
ZC3H12D	340152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	149783104	149783104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_207360	exon3	c.A308G	p.H103R	.	.	41	4	94	0	.	.
ZFHX4	79776	hgsc.bcm.edu	37	8	77766356	77766356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZFHX4	NM_024721	exon10	c.A7199G	p.E2400G	.	.	91	4	92	0	.	98
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68215323	68215323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZFYVE26	NM_015346	exon42	c.T7450C	p.S2484P	.	.	68	4	117	0	.	162
ZNF226	7769	hgsc.bcm.edu	37	19	44679880	44679880	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001032372	exon6	c.T465C	p.G155G	.	.	81	4	104	0	.	.
ZNF263	10127	hgsc.bcm.edu	37	16	3340153	3340153	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF263	NM_005741	exon6	c.T1647C	p.S549S	.	.	118	5	119	0	.	94
ZNF287	57336	hgsc.bcm.edu	37	17	16456389	16456389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF287	NM_020653	exon6	c.T1067C	p.I356T	.	.	86	4	102	0	.	90
ZNF347	84671	hgsc.bcm.edu;bcgsc.ca	37	19	53643997	53643997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF347	NM_001172675	exon5	c.A2087G	p.K696R	.	.	122	6	88	0	.	90
ZNF384	171017	hgsc.bcm.edu	37	12	6777072	6777072	+	Silent	SNP	C	C	T	rs78573212		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF384	NM_001135734	exon11	c.G1542A	p.Q514Q	.	.	62	9	53	0	.	1083
ZNF408	79797	hgsc.bcm.edu	37	11	46724728	46724728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF408	NM_024741	exon4	c.A587C	p.E196A	.	.	102	6	109	0	.	90
ZNF41	7592	hgsc.bcm.edu	37	X	47307022	47307022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF41	NM_007130	exon5	c.A2147G	p.E716G	.	.	78	4	94	0	.	133
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109734481	109734481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF462	NM_021224	exon8	c.G6623A	p.R2208H	.	.	199	74	214	3	.	95
ZNF483	158399	bcgsc.ca	37	9	114303941	114303941	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF483	NM_133464	exon6	c.A726G	p.E242E	.	.	25	3	52	0	.	91
ZNF544	27300	broad.mit.edu	37	19	58772470	58772470	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF544	NM_014480	exon7	c.T498C	p.S166S	.	.	155	5	133	0	.	91
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37211090	37211090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF567	NM_152603	exon4	c.G1371T	p.M457I	.	.	108	32	92	0	.	90
ZNF576	79177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44103100	44103100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF576	NM_001145347	exon3	c.G203A	p.G68E	.	.	173	80	133	0	.	90
ZNF611	81856	hgsc.bcm.edu	37	19	53208850	53208850	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF611	NM_030972	exon7	c.A1458G	p.E486E	.	.	103	5	103	0	.	91
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47919903	47919903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF630	NM_001037735	exon4	c.A164G	p.D55G	.	.	27	21	22	0	.	131
ZNF662	389114	hgsc.bcm.edu;bcgsc.ca	37	3	42954744	42954744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF662	NM_207404	exon4	c.A203G	p.E68G	.	.	62	4	127	0	.	90
ZNF700	90592	hgsc.bcm.edu	37	19	12059745	12059745	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF700	NM_001271848	exon4	c.A915G	p.G305G	.	.	94	4	63	0	.	90
ZNF714	148206	hgsc.bcm.edu	37	19	21299779	21299779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF714	NM_182515	exon5	c.A309T	p.E103D	.	.	106	7	112	0	.	67
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149129992	149129992	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF777	NM_015694	exon6	c.C1371T	p.D457D	.	.	143	63	141	0	.	136
ZNF793	390927	hgsc.bcm.edu	37	19	38023265	38023265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF793	NM_001013659	exon6	c.T23C	p.V8A	.	.	88	4	82	0	.	68
ZNF805	390980	hgsc.bcm.edu	37	19	57765823	57765823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001023563	exon4	c.A1636G	p.K546E	.	.	85	4	91	0	.	.
ZNF816	125893	hgsc.bcm.edu	37	19	53454471	53454471	+	Missense_Mutation	SNP	G	G	C	rs79566976		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF816	NM_001202457	exon4	c.C557G	p.A186G	.	.	81	6	91	0	.	68
ZNF816	125893	hgsc.bcm.edu	37	19	53454475	53454475	+	Missense_Mutation	SNP	C	C	T	rs79186164	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF816	NM_001202457	exon4	c.G553A	p.G185S	.	.	86	3	89	0	C|0.993;T|0.007	68
ZNF823	55552	hgsc.bcm.edu	37	19	11832694	11832694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF823	NM_001080493	exon4	c.A1655G	p.E552G	.	.	95	4	98	0	.	24
ZNF860	344787	hgsc.bcm.edu	37	3	32031946	32031946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF860	NM_001137674	exon2	c.T1375C	p.C459R	.	.	33	4	49	0	.	1
DCHS1	8642	hgsc.bcm.edu	37	11	6662744	6662745	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	p.G34L	.	.	.	.	.	.	.	
NUCB2	4925	hgsc.bcm.edu	37	11	17352479	17352480	+	Missense_Mutation	DNP	CA	CA	TT	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	p.Q402L	.	.	.	.	.	.	.	
C11orf40	143501	hgsc.bcm.edu	37	11	4592711	4592712	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	p.N199L	.	.	.	.	.	.	.	
LFNG	3955	hgsc.bcm.edu	37	7	2552910	2552911	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	p.E56G	.	.	.	.	.	.	.	
SPAG8	26206	hgsc.bcm.edu	37	9	35811508	35811509	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	.	.	.	p.S179P	.	.	.	.	.	.	.	
