Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA9	10350	hgsc.bcm.edu	37	17	67041411	67041411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABCA9	NM_080283	exon4	c.A371G	p.D124G	.	.	87	4	103	0	.	95
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183655819	183655819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABCC5	NM_005688	exon26	c.C3724T	p.R1242C	.	.	124	27	126	0	.	137
ABR	29	hgsc.bcm.edu	37	17	975915	975915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABR	NM_021962	exon8	c.T833C	p.L278P	.	.	121	5	153	0	.	91
ACACA	31	hgsc.bcm.edu	37	17	35598870	35598870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACACA	NM_198834	exon23	c.A3031G	p.R1011G	.	.	86	3	135	0	.	154
ACOT12	134526	hgsc.bcm.edu;bcgsc.ca	37	5	80655835	80655835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACOT12	NM_130767	exon5	c.T383C	p.L128P	.	.	83	4	73	0	.	92
ACTR2	10097	hgsc.bcm.edu	37	2	65466992	65466992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACTR2	NM_001005386	exon2	c.A55G	p.K19E	.	.	93	4	104	0	.	278
ADAMTS13	11093	hgsc.bcm.edu	37	9	136304502	136304502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADAMTS13	NM_139027	exon15	c.T1721C	p.L574P	.	.	78	4	123	0	.	229
ADAMTSL1	92949	hgsc.bcm.edu;bcgsc.ca	37	9	18636002	18636002	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADAMTSL1	NM_052866	exon6	c.T663C	p.G221G	.	.	98	4	163	0	.	230
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADH1A	NM_000667	exon6	c.G759A	p.E253E	.	.	353	14	524	27	.	227
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88052964	88052964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AFF1	NM_001166693	exon18	c.T3121A	p.S1041T	.	.	104	19	181	0	.	289
AFP	174	hgsc.bcm.edu	37	4	74308085	74308085	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AFP	NM_001134	exon5	c.T555C	p.Y185Y	.	.	63	4	114	0	.	91
AGAP3	116988	hgsc.bcm.edu	37	7	150825737	150825737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGAP3	NM_031946	exon10	c.A1292G	p.D431G	.	.	75	4	61	0	.	92
AGPAT4	56895	hgsc.bcm.edu;bcgsc.ca	37	6	161567572	161567572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT4	NM_020133	exon7	c.A827G	p.K276R	.	.	64	4	68	0	.	90
AGPAT6	137964	hgsc.bcm.edu;bcgsc.ca	37	8	41472557	41472557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT6	NM_178819	exon10	c.T1043C	p.V348A	.	.	90	5	124	0	.	90
AHNAK	79026	hgsc.bcm.edu	37	11	62286551	62286551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AHNAK	NM_001620	exon5	c.T15338C	p.L5113P	.	.	96	4	127	0	.	109
AKAP11	11215	hgsc.bcm.edu	37	13	42875524	42875524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AKAP11	NM_016248	exon8	c.A2642G	p.H881R	.	.	116	5	93	0	.	227
ALPK2	115701	hgsc.bcm.edu	37	18	56246468	56246468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	ALPK2_ENST00000361673,NS,carcinoma,+2	ALPK2	NM_052947	exon4	c.A1540G	p.T514A	.	.	66	3	115	0	.	765
AMPD2	271	hgsc.bcm.edu;bcgsc.ca	37	1	110173318	110173318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AMPD2	NM_004037	exon17	c.A2333G	p.E778G	.	.	68	4	94	0	.	292
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	155	4	142	0	.	.
ANK3	288	hgsc.bcm.edu;bcgsc.ca	37	10	61843261	61843261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANK3	NM_001204404	exon34	c.T4192C	p.F1398L	.	.	59	4	88	0	.	107
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92028083	92028083	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANKIB1	NM_019004	exon20	c.T3090C	p.S1030S	.	.	129	51	103	0	.	432
ANKRD50	57182	hgsc.bcm.edu	37	4	125592939	125592939	+	Missense_Mutation	SNP	T	T	C	rs200716397		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANKRD50	NM_020337	exon4	c.A1493G	p.Q498R	.	.	76	4	116	0	T|0.999;C|0.001	90
AP4M1	9179	hgsc.bcm.edu	37	7	99704091	99704091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AP4M1	NM_004722	exon14	c.A1091G	p.D364G	.	.	77	4	77	0	.	90
AQR	9716	bcgsc.ca	37	15	35224570	35224570	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AQR	NM_014691	exon11	c.T849C	p.C283C	.	.	76	4	82	1	.	135
ARAP2	116984	hgsc.bcm.edu;bcgsc.ca	37	4	36069848	36069848	+	Missense_Mutation	SNP	T	T	C	rs202134005	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP2	NM_015230	exon33	c.A4796G	p.E1599G	.	.	57	4	59	0	T|0.999;A|0.001	93
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141059772	141059772	+	Silent	SNP	G	G	A	rs146312944		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP3	NM_022481	exon2	c.C282T	p.P94P	.	.	134	66	150	0	G|1.000;A|0.000	291
ARHGAP31	57514	hgsc.bcm.edu	37	3	119133131	119133131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARHGAP31	NM_020754	exon12	c.T2355C	p.P785P	.	.	40	4	56	0	.	92
ARHGAP35	2909	hgsc.bcm.edu;bcgsc.ca	37	19	47424967	47424967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_004491	exon1	c.T3035C	p.L1012P	.	.	123	5	113	0	.	.
ARHGAP36	158763	hgsc.bcm.edu	37	X	130222734	130222734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARHGAP36	NM_144967	exon12	c.C1619T	p.T540I	.	.	88	4	79	0	.	133
ARHGEF18	23370	hgsc.bcm.edu	37	19	7533871	7533871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARHGEF18	NM_001130955	exon17	c.T3077C	p.V1026A	.	.	69	4	46	0	.	228
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	9533657	9533657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASAP2	NM_003887	exon24	c.C2565A	p.S855R	.	.	80	12	71	0	.	90
ASB5	140458	hgsc.bcm.edu	37	4	177190150	177190150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASB5	NM_080874	exon1	c.T110C	p.I37T	.	.	77	4	101	0	.	228
ASCC3	10973	hgsc.bcm.edu;bcgsc.ca	37	6	101109765	101109765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASCC3	NM_006828	exon16	c.A2620G	p.S874G	.	.	110	5	108	0	.	96
ASXL1	171023	hgsc.bcm.edu	37	20	31021502	31021502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASXL1	NM_015338	exon11	c.T1501C	p.S501P	.	.	138	6	97	0	.	2057
ATAD3B	83858	broad.mit.edu	37	1	1420466	1420466	+	Missense_Mutation	SNP	T	T	A	rs200026807		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATAD3B	NM_031921	exon8	c.T821A	p.F274Y	.	.	426	9	322	1	.	44
ATG14	22863	hgsc.bcm.edu	37	14	55836380	55836380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATG14	NM_014924	exon10	c.C1436A	p.A479D	.	.	93	4	115	0	.	90
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108138031	108138031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATM	NM_000051	exon17	c.G2600C	p.S867T	.	.	68	31	124	0	.	3419
ATP10D	57205	bcgsc.ca	37	4	47527595	47527595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATP10D	NM_020453	exon5	c.A712G	p.K238E	.	.	71	4	68	0	.	93
ATP2C1	27032	hgsc.bcm.edu	37	3	130735014	130735014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATP2C1	NM_001199180	exon28	c.A2845G	p.S949G	.	.	105	5	74	0	.	91
AXL	558	hgsc.bcm.edu	37	19	41762508	41762508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AXL	NM_021913	exon18	c.A2188G	p.S730G	.	.	122	5	112	0	.	1403
BAG6	7917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31610072	31610072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BAG6	NM_004639	exon15	c.C2062T	p.P688S	.	.	102	7	66	0	.	154
BAZ2B	29994	broad.mit.edu;mdanderson.org	37	2	160295184	160295184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BAZ2B	NM_013450	exon8	c.A923G	p.D308G	.	.	18	3	25	0	.	94
BBS5	129880	hgsc.bcm.edu;bcgsc.ca	37	2	170343593	170343593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BBS5	NM_152384	exon3	c.A157G	p.T53A	.	.	83	4	87	0	.	90
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60687558	60687558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL11A	NM_022893	exon4	c.A2489C	p.N830T	.	.	50	31	84	0	.	1149
BCL7A	605	hgsc.bcm.edu;bcgsc.ca	37	12	122492735	122492735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL7A	NM_020993	exon5	c.A464G	p.Q155R	.	.	75	4	68	0	.	685
BICD1	636	hgsc.bcm.edu;bcgsc.ca	37	12	32369322	32369322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon2	c.A355G	p.S119G	.	.	116	5	127	0	.	153
BICD1	636	hgsc.bcm.edu;bcgsc.ca	37	12	32520657	32520657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon9	c.A2818G	p.R940G	.	.	73	4	60	0	.	153
BRWD1	54014	hgsc.bcm.edu;bcgsc.ca	37	21	40590495	40590495	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BRWD1	NM_018963	exon30	c.T3474C	p.G1158G	.	.	86	5	92	0	.	94
BTAF1	9044	bcgsc.ca	37	10	93740262	93740262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BTAF1	NM_003972	exon15	c.T1702C	p.F568L	.	.	75	4	126	1	.	92
BZRAP1	9256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56388536	56388536	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BZRAP1	NM_004758	exon19	c.G3120T	p.L1040L	.	.	115	84	109	1	.	229
C10orf137	26098	hgsc.bcm.edu;bcgsc.ca	37	10	127431772	127431772	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C10orf137	NM_001202438	exon18	c.A2517G	p.R839R	.	.	84	4	99	0	.	590
C17orf70	80233	hgsc.bcm.edu	37	17	79517603	79517603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C17orf70	NM_025161	exon3	c.A917G	p.D306G	.	.	118	5	116	0	.	92
C19orf57	79173	hgsc.bcm.edu	37	19	14000257	14000257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C19orf57	NM_024323	exon6	c.A1412G	p.E471G	.	.	91	4	78	0	.	93
C1orf173	127254	hgsc.bcm.edu;bcgsc.ca	37	1	75078418	75078418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C1orf173	NM_001002912	exon9	c.T1076C	p.V359A	.	.	61	5	68	0	.	94
C1orf27	54953	hgsc.bcm.edu	37	1	186375351	186375351	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C1orf27	NM_017847	exon12	c.T1137C	p.D379D	.	.	73	4	79	0	.	23
C5AR2	27202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47844736	47844736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001271750	exon2	c.C680A	p.A227E	.	.	38	16	27	0	.	.
C9orf3	84909	hgsc.bcm.edu	37	9	97535345	97535345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C9orf3	NM_001193331	exon3	c.C859T	p.P287S	.	.	97	4	188	0	.	91
C9orf41	138199	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	77614715	77614715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C9orf41	NM_152420	exon4	c.T662C	p.L221P	.	.	24	4	43	0	.	92
CA5B	11238	hgsc.bcm.edu	37	X	15768152	15768152	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CA5B	NM_007220	exon2	c.G6A	p.V2V	.	.	85	4	65	0	.	130
CACNG8	59283	hgsc.bcm.edu	37	19	54485412	54485412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CACNG8	NM_031895	exon4	c.A587G	p.K196R	.	.	106	5	82	0	.	90
CAND2	23066	hgsc.bcm.edu	37	3	12858556	12858556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CAND2	NM_001162499	exon10	c.C2125T	p.H709Y	.	.	88	4	81	0	.	72
CARD11	84433	hgsc.bcm.edu	37	7	2963882	2963882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CARD11	NM_032415	exon15	c.A1925G	p.K642R	.	.	91	4	82	0	.	870
CASKIN1	57524	bcgsc.ca	37	16	2231333	2231333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CASKIN1	NM_020764	exon18	c.C2036T	p.S679F	.	.	53	4	43	0	.	92
CASP1	834	broad.mit.edu	37	11	104905038	104905038	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CASP1	NM_001257119	exon2	c.G171C	p.L57F	.	.	310	5	377	0	.	661
CC2D2A	57545	hgsc.bcm.edu	37	4	15539668	15539668	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CC2D2A	NM_001080522	exon17	c.A1911G	p.R637R	.	.	117	5	84	0	.	25
CCAR1	55749	hgsc.bcm.edu;bcgsc.ca	37	10	70515291	70515291	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCAR1	NM_018237	exon13	c.A1623G	p.Q541Q	.	.	95	4	160	0	.	159
CCDC142	84865	bcgsc.ca	37	2	74701798	74701798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC142	NM_032779	exon9	c.A2107G	p.R703G	.	.	66	5	83	1	.	68
CCDC147	159686	hgsc.bcm.edu	37	10	106128250	106128250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC147	NM_001008723	exon6	c.A862G	p.N288D	.	.	73	4	80	0	.	71
CCDC147	159686	hgsc.bcm.edu	37	10	106160619	106160619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC147	NM_001008723	exon13	c.A1997G	p.K666R	.	.	87	4	80	0	.	71
CCDC148	130940	hgsc.bcm.edu	37	2	159035423	159035423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC148	NM_138803	exon12	c.A1456G	p.R486G	.	.	89	4	91	0	.	70
CCDC39	339829	hgsc.bcm.edu;bcgsc.ca	37	3	180361933	180361933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC39	NM_181426	exon12	c.T1640C	p.L547P	.	.	81	5	97	0	.	72
CCDC6	8030	hgsc.bcm.edu;bcgsc.ca	37	10	61612353	61612353	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC6	NM_005436	exon2	c.A411G	p.E137E	.	.	84	4	128	0	.	686
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46915065	46915065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC8	NM_032040	exon1	c.C1003G	p.Q335E	.	.	160	20	205	0	.	93
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91770230	91770230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC88C	NM_001080414	exon20	c.C3450T	p.N1150N	.	.	76	5	104	0	.	25
CCDC90B	60492	hgsc.bcm.edu	37	11	82984887	82984887	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC90B	NM_021825	exon6	c.A489G	p.R163R	.	.	93	4	137	0	.	90
CCK	885	hgsc.bcm.edu;bcgsc.ca	37	3	42305118	42305118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCK	NM_000729	exon4	c.A5G	p.N2S	.	.	51	4	52	0	.	514
CCZ1B	221960	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	6851599	6851599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_198097	exon10	c.A938T	p.H313L	.	.	254	39	250	1	.	.
CD109	135228	bcgsc.ca	37	6	74493528	74493528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CD109	NM_133493	exon19	c.T2204C	p.L735P	.	.	74	4	72	0	.	155
CD1D	912	hgsc.bcm.edu	37	1	158151417	158151417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CD1D	NM_001766	exon3	c.C234G	p.D78E	.	.	54	5	50	0	.	92
CDC7	8317	hgsc.bcm.edu;bcgsc.ca	37	1	91978625	91978625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G583A	p.V195I	.	.	73	4	166	0	.	1125
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91978829	91978829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G787T	p.A263S	.	.	125	20	192	0	.	1125
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45153758	45153758	+	Missense_Mutation	SNP	C	C	G	rs149422328	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDCP1	NM_178181	exon3	c.G472C	p.G158R	.	.	60	28	94	0	C|1.000;T|0.000	117
CDH12	1010	broad.mit.edu	37	5	21760733	21760733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH12	NM_004061	exon13	c.C1567A	p.Q523K	.	.	107	4	95	0	.	92
CDH4	1002	hgsc.bcm.edu	37	20	60318825	60318825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH4	NM_001794	exon3	c.T376C	p.S126P	.	.	97	4	77	0	.	282
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26906841	26906841	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH9	NM_016279	exon4	c.G630T	p.V210V	.	.	73	20	87	0	.	99
CELF1	10658	hgsc.bcm.edu	37	11	47510436	47510436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CELF1	NM_001172639	exon4	c.A212G	p.E71G	.	.	85	4	87	0	.	92
CENPW	387103	hgsc.bcm.edu;bcgsc.ca	37	6	126661441	126661441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CENPW	NM_001012507	exon1	c.T22C	p.S8P	.	.	68	4	66	0	.	90
CEP152	22995	hgsc.bcm.edu	37	15	49060502	49060502	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CEP152	NM_014985	exon15	c.A1932G	p.K644K	.	.	83	4	100	0	.	70
CEP192	55125	hgsc.bcm.edu	37	18	13103589	13103589	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CEP192	NM_032142	exon39	c.6951+2T>C	.	.	.	69	4	89	0	.	27
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93489406	93489406	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.G1337C	p.S446T	.	.	186	68	276	1	.	229
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93489423	93489423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.A1354G	p.T452A	.	.	199	76	288	0	.	229
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	61757511	61757511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD7	NM_017780	exon22	c.C4939G	p.L1647V	.	.	99	5	78	0	.	141
CHMP4C	92421	bcgsc.ca	37	8	82670532	82670532	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHMP4C	NM_152284	exon4	c.637+2T>C	.	.	.	120	5	105	1	.	92
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240072218	240072218	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHRM3	NM_000740	exon5	c.G1467A	p.A489A	.	.	147	36	148	0	.	95
CLN6	54982	hgsc.bcm.edu	37	15	68500609	68500609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CLN6	NM_017882	exon7	c.A805G	p.T269A	.	.	113	6	121	0	.	91
CLSTN1	22883	bcgsc.ca	37	1	9809885	9809885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CLSTN1	NM_001009566	exon6	c.A736G	p.R246G	.	.	78	4	137	1	.	523
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70724192	70724192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNOT2	NM_001199302	exon7	c.C512A	p.P171Q	.	.	126	70	199	0	.	226
CNTN6	27255	hgsc.bcm.edu	37	3	1337367	1337367	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTN6	NM_014461	exon6	c.A537G	p.G179G	.	.	78	4	123	0	.	345
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125192079	125192079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTNAP5	NM_130773	exon5	c.T548G	p.F183C	.	.	185	86	232	0	.	524
CNTRL	11064	hgsc.bcm.edu	37	9	123937427	123937427	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTRL	NM_007018	exon41	c.A6879G	p.A2293A	.	.	79	4	109	0	.	661
COL11A1	1301	hgsc.bcm.edu	37	1	103481281	103481281	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	COL11A1	NM_080629	exon12	c.T1467C	p.P489P	.	.	97	4	163	0	.	586
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101748062	101748062	+	Missense_Mutation	SNP	G	G	A	rs201906975		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	COL15A1	NM_001855	exon3	c.G316A	p.V106M	.	.	64	51	83	0	G|0.999;A|0.000	96
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130098302	130098302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_153264	exon4	c.C709A	p.L237I	.	.	201	90	163	0	.	.
COLEC11	78989	hgsc.bcm.edu	37	2	3691494	3691494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	COLEC11	NM_001255985	exon8	c.T644C	p.V215A	.	.	79	4	76	0	.	90
CPSF6	11052	hgsc.bcm.edu	37	12	69644987	69644987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CPSF6	NM_007007	exon2	c.C139T	p.P47S	.	.	69	4	89	0	.	226
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207679429	207679429	+	Splice_Site	SNP	G	G	A	rs199647026		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CR1	NM_000573	exon2	c.301+1G>A	.	.	.	117	30	139	0	.	93
CREB3	10488	hgsc.bcm.edu;bcgsc.ca	37	9	35733445	35733445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CREB3	NM_006368	exon4	c.A398G	p.E133G	.	.	84	4	125	0	.	90
CSF1R	1436	bcgsc.ca	37	5	149441327	149441327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	CSF1R,NS,haematopoietic_neoplasm,-1	CSF1R	NM_005211	exon12	c.A1712G	p.Y571C	.	.	142	6	151	0	.	2640
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156755023	156755023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CYFIP2	NM_001037332	exon19	c.C2122G	p.Q708E	.	.	108	21	115	0	.	22
DCHS2	54798	hgsc.bcm.edu	37	4	155156115	155156115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DCHS2	NM_017639	exon25	c.A8324G	p.D2775G	.	.	89	4	171	0	.	94
DCHS2	54798	hgsc.bcm.edu;bcgsc.ca	37	4	155278418	155278418	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DCHS2	NM_017639	exon6	c.A753G	p.E251E	.	.	33	4	42	0	.	94
DDX10	1662	ucsc.edu	37	11	108593806	108593806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX10	NM_004398	exon13	c.C1582A	p.Q528K	.	.	62	13	75	4	.	1145
DDX60L	91351	hgsc.bcm.edu;bcgsc.ca	37	4	169282339	169282339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon37	c.A4952G	p.K1651R	.	.	94	4	113	0	.	69
DDX60L	91351	hgsc.bcm.edu;bcgsc.ca	37	4	169317190	169317190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon27	c.A3577G	p.K1193E	.	.	146	6	207	0	.	69
DEPDC1	55635	bcgsc.ca	37	1	68948187	68948187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DEPDC1	NM_001114120	exon8	c.A1304G	p.K435R	.	.	205	6	315	1	.	90
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76503588	76503588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH17	NM_173628	exon28	c.G4536C	p.Q1512H	.	.	151	30	129	0	.	142
DNAH6	1768	bcgsc.ca	37	2	84867683	84867683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH6	NM_001370	exon32	c.T4951C	p.S1651P	.	.	200	6	214	0	.	69
DNAH6	1768	hgsc.bcm.edu;bcgsc.ca	37	2	84924794	84924794	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH6	NM_001370	exon47	c.A7620G	p.L2540L	.	.	64	4	83	0	.	69
DNAJC2	27000	bcgsc.ca	37	7	102956473	102956473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAJC2	NM_014377	exon14	c.A1490G	p.K497R	.	.	73	4	75	0	.	158
DNAJC25	548645	hgsc.bcm.edu;bcgsc.ca	37	9	114411855	114411855	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAJC25	NM_001015882	exon3	c.A612G	p.K204K	.	.	81	4	118	0	.	22
DNHD1	144132	broad.mit.edu	37	11	6587070	6587070	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNHD1	NM_144666	exon33	c.A10902G	p.Q3634Q	.	.	177	6	201	0	.	24
DNMT3B	1789	bcgsc.ca	37	20	31389215	31389215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNMT3B	NM_006892	exon19	c.A2128G	p.I710V	.	.	190	6	141	0	.	660
DOCK3	1795	hgsc.bcm.edu	37	3	51378810	51378810	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DOCK3	NM_004947	exon38	c.A3909G	p.K1303K	.	.	99	4	153	0	.	22
DOCK7	85440	hgsc.bcm.edu	37	1	62941000	62941000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DOCK7	NM_001271999	exon46	c.T5951C	p.V1984A	.	.	134	6	199	0	.	92
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116593811	116593811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DPP10	NM_001178034	exon22	c.A2041C	p.I681L	.	.	118	17	142	0	.	142
DSCAML1	57453	hgsc.bcm.edu	37	11	117376187	117376187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DSCAML1	NM_020693	exon9	c.C2224T	p.R742C	.	.	98	4	74	0	.	159
DSCC1	79075	hgsc.bcm.edu	37	8	120850618	120850618	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DSCC1	NM_024094	exon8	c.A954G	p.R318R	.	.	137	6	118	0	.	228
DSEL	92126	ucsc.edu;bcgsc.ca	37	18	65180906	65180906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DSEL	NM_032160	exon2	c.T970C	p.F324L	.	.	43	4	84	0	.	157
DST	667	bcgsc.ca;mdanderson.org	37	6	56418422	56418422	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DST	NM_015548	exon42	c.T7299C	p.C2433C	.	.	21	3	30	0	.	523
DTX4	23220	bcgsc.ca	37	11	58972156	58972156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DTX4	NM_015177	exon9	c.A1634G	p.K545R	.	.	67	4	64	0	.	501
DUS4L	11062	hgsc.bcm.edu;bcgsc.ca	37	7	107216859	107216859	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DUS4L	NM_001270419	exon7	c.A528G	p.E176E	.	.	98	4	69	0	.	90
EFNA5	1946	hgsc.bcm.edu;broad.mit.edu	37	5	106763128	106763128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EFNA5	NM_001962	exon2	c.C208A	p.P70T	.	.	97	4	123	0	.	90
EGR2	1959	bcgsc.ca	37	10	64574190	64574190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EGR2	NM_000399	exon2	c.T208C	p.S70P	.	.	96	5	107	2	.	92
EGR3	1960	broad.mit.edu;ucsc.edu	37	8	22548280	22548280	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EGR3	NM_004430	exon2	c.C870T	p.D290D	.	.	48	12	21	1	.	90
EHD4	30844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42245961	42245961	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EHD4	NM_139265	exon3	c.413+1G>T	.	.	.	66	36	77	0	.	92
EIF4G3	8672	hgsc.bcm.edu	37	1	21176020	21176020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EIF4G3	NM_001198801	exon27	c.A3716G	p.K1239R	.	.	84	4	151	0	.	91
EIF4G3	8672	hgsc.bcm.edu;bcgsc.ca	37	1	21221985	21221985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EIF4G3	NM_001198802	exon15	c.A1859G	p.K620R	.	.	67	4	86	0	.	91
ELP2	55250	hgsc.bcm.edu	37	18	33709907	33709907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ELP2	NM_001242879	exon1	c.C11T	p.P4L	.	.	97	4	112	0	.	290
ENG	2022	hgsc.bcm.edu	37	9	130588025	130588025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ENG	NM_001114753	exon5	c.C638T	p.A213V	.	.	24	4	26	0	.	90
EP400	57634	ucsc.edu	37	12	132549241	132549241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EP400	NM_015409	exon48	c.A8363G	p.K2788R	.	.	35	4	55	0	.	520
EPHA6	285220	hgsc.bcm.edu	37	3	96533714	96533714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPHA6	NM_001080448	exon1	c.T247C	p.S83P	.	.	109	5	128	0	.	1561
EPHX1	2052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226030103	226030103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPHX1	NM_001136018	exon7	c.C968A	p.A323D	.	.	111	53	85	0	.	281
EPS8	2059	hgsc.bcm.edu;bcgsc.ca	37	12	15774278	15774278	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPS8	NM_004447	exon21	c.A2442G	p.E814E	.	.	67	6	64	0	.	94
ESR1	2099	hgsc.bcm.edu;bcgsc.ca	37	6	152265434	152265434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ESR1	NM_000125	exon4	c.T887C	p.L296P	.	.	109	5	99	0	.	1042
ETAA1	54465	hgsc.bcm.edu;bcgsc.ca	37	2	67632242	67632242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ETAA1	NM_019002	exon5	c.A2428G	p.S810G	.	.	73	5	77	0	.	156
EXOC6B	23233	hgsc.bcm.edu;bcgsc.ca	37	2	72707813	72707813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EXOC6B	NM_015189	exon17	c.A1732G	p.T578A	.	.	76	4	111	0	.	68
FABP2	2169	bcgsc.ca	37	4	120243253	120243253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FABP2	NM_000134	exon1	c.C5T	p.A2V	.	.	134	5	212	1	.	91
FAHD2CP	729234	ucsc.edu	37	2	96688679	96688679	+	RNA	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	319	85	385	2	.	.
FAM149A	25854	hgsc.bcm.edu;bcgsc.ca	37	4	187077241	187077241	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM149A	NM_001006655	exon6	c.T471C	p.C157C	.	.	71	4	108	0	.	90
FAM169A	26049	hgsc.bcm.edu	37	5	74130327	74130327	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM169A	NM_015566	exon5	c.T414C	p.C138C	.	.	99	4	119	0	.	22
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM46A	NM_017633	exon2	c.C117T	p.G39G	.	.	35	4	15	0	.	90
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177247856	177247856	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM5B	NM_021165	exon7	c.A1170T	p.L390L	.	.	116	49	117	0	.	28
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49214133	49214133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM65C	NM_080829	exon14	c.G1762T	p.G588C	.	.	140	18	109	0	.	92
FAM81A	145773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59801108	59801108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM81A	NM_152450	exon6	c.G590A	p.S197N	.	.	567	149	583	0	.	91
FAM83B	222584	hgsc.bcm.edu;bcgsc.ca	37	6	54805894	54805894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM83B	NM_001010872	exon5	c.A2125G	p.S709G	.	.	78	4	72	0	.	96
FAM92A1P2	403315	bcgsc.ca	37	4	183959134	183959134	+	RNA	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	52	4	89	0	.	.
FANCB	2187	hgsc.bcm.edu	37	X	14868753	14868753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FANCB	NM_152633	exon6	c.T1370C	p.V457A	.	.	81	4	70	0	.	562
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150945475	150945475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAT2	NM_001447	exon1	c.G3018T	p.R1006S	.	.	154	9	128	0	.	96
FBXO24	26261	hgsc.bcm.edu	37	7	100187324	100187324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FBXO24	NM_012172	exon1	c.A61G	p.S21G	.	.	130	6	118	0	.	229
FER1L5	90342	hgsc.bcm.edu;bcgsc.ca	37	2	97365352	97365352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FER1L5	NM_001113382	exon42	c.A4757G	p.D1586G	.	.	106	5	105	0	.	23
FER	2241	hgsc.bcm.edu	37	5	108380491	108380491	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FER	NM_005246	exon15	c.A1824G	p.E608E	.	.	95	4	108	0	.	946
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171236701	171236701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FMO1	NM_002021	exon3	c.G152A	p.R51K	.	.	191	46	124	0	.	515
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	79204044	79204044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRAS1	NM_001166133	exon12	c.A1178G	p.E393G	.	.	97	6	131	0	.	68
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRG1B	.	.	.	.	.	.	437	19	516	10	.	22
FRK	2444	hgsc.bcm.edu;bcgsc.ca	37	6	116263618	116263618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRK	NM_002031	exon8	c.A1477G	p.T493A	.	.	102	5	143	0	.	948
FRY	10129	hgsc.bcm.edu;bcgsc.ca	37	13	32698997	32698997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRY	NM_023037	exon7	c.T701C	p.V234A	.	.	87	4	92	0	.	142
GAB1	2549	bcgsc.ca	37	4	144359611	144359611	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GAB1	NM_207123	exon4	c.T1053C	p.A351A	.	.	89	4	148	1	.	1146
GALNT3	2591	hgsc.bcm.edu	37	2	166613715	166613715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GALNT3	NM_004482	exon7	c.G1234A	p.V412I	.	.	89	4	86	0	.	92
GATA3	2625	hgsc.bcm.edu	37	10	8115947	8115947	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GATA3	NM_001002295	exon6	c.A1296G	p.G432G	.	.	104	6	69	0	.	1004
GCNT2	2651	broad.mit.edu;bcgsc.ca	37	6	10587020	10587020	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GCNT2	NM_145655	exon1	c.T798C	p.Y266Y	.	.	153	6	146	0	.	92
GJA1	2697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	121768871	121768871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA1	NM_000165	exon2	c.G878A	p.R293K	.	.	50	6	85	0	.	92
GJA5	2702	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	147230516	147230516	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA5	NM_005266	exon2	c.A831G	p.G277G	.	.	267	74	187	1	.	91
GLB1	2720	hgsc.bcm.edu	37	3	33110429	33110429	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GLB1	NM_000404	exon3	c.A279G	p.P93P	.	.	95	4	136	0	.	135
GMCL1P1	64396	bcgsc.ca	37	5	177613034	177613034	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	60	4	68	0	.	.
GNAI1	2770	hgsc.bcm.edu	37	7	79764532	79764532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GNAI1	NM_002069	exon1	c.T56C	p.I19T	.	.	98	4	82	0	.	653
GPR124	25960	hgsc.bcm.edu	37	8	37672476	37672476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GPR124	NM_032777	exon2	c.T329C	p.L110P	.	.	98	4	117	0	.	157
GPR142	350383	hgsc.bcm.edu	37	17	72368628	72368628	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GPR142	NM_181790	exon4	c.A1278G	p.R426R	.	.	99	5	91	0	.	93
GPRASP2	114928	hgsc.bcm.edu	37	X	101970641	101970641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GPRASP2	NM_138437	exon4	c.T844C	p.S282P	.	.	100	4	95	0	.	131
GRAMD1A	57655	hgsc.bcm.edu	37	19	35514222	35514222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRAMD1A	NM_020895	exon18	c.T1936C	p.W646R	.	.	96	4	119	0	.	90
GRAMD1C	54762	hgsc.bcm.edu	37	3	113601609	113601609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRAMD1C	NM_017577	exon6	c.C470T	p.T157I	.	.	123	5	137	0	.	93
GRAMD3	65983	hgsc.bcm.edu	37	5	125813469	125813469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRAMD3	NM_001146319	exon6	c.T617C	p.V206A	.	.	91	4	87	0	.	90
GRIA3	2892	hgsc.bcm.edu	37	X	122551504	122551504	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRIA3	NM_000828	exon11	c.A1752G	p.E584E	.	.	97	4	103	0	.	134
GTDC1	79712	broad.mit.edu;bcgsc.ca	37	2	144899492	144899492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GTDC1	NM_001006636	exon6	c.T478C	p.C160R	.	.	146	5	165	2	.	91
HARS2	23438	bcgsc.ca	37	5	140076571	140076571	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HARS2	NM_012208	exon9	c.A870G	p.L290L	.	.	49	4	67	0	.	90
HAS1	3036	ucsc.edu;bcgsc.ca	37	19	52220351	52220351	+	Silent	SNP	G	G	A	rs11084111	byfrequency	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HAS1	NM_001523	exon3	c.C798T	p.D266D	.	.	76	18	62	1	G|0.855;A|0.145	92
HBS1L	10767	hgsc.bcm.edu	37	6	135323935	135323935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HBS1L	NM_006620	exon5	c.T476C	p.V159A	.	.	125	5	152	0	.	92
HDAC5	10014	hgsc.bcm.edu	37	17	42168677	42168677	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HDAC5	NM_001015053	exon11	c.T1351C	p.L451L	.	.	109	5	75	0	.	227
HEATR3	55027	hgsc.bcm.edu	37	16	50136189	50136189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HEATR3	NM_182922	exon14	c.T1763C	p.L588P	.	.	79	4	100	0	.	92
HENMT1	113802	hgsc.bcm.edu	37	1	109191529	109191529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HENMT1	NM_144584	exon8	c.A841G	p.S281G	.	.	63	4	97	0	.	93
HGSNAT	138050	hgsc.bcm.edu	37	8	43047567	43047567	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HGSNAT	NM_152419	exon13	c.T1371C	p.S457S	.	.	88	4	70	0	.	68
HHLA1	10086	hgsc.bcm.edu	37	8	133116394	133116394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001145095	exon2	c.G100A	p.A34T	.	.	95	4	81	0	.	.
HIST1H1E	3008	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26156843	26156843	+	Missense_Mutation	SNP	G	G	T	rs150948103	byfrequency;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HIST1H1E	NM_005321	exon1	c.G225T	p.K75N	.	.	118	28	129	0	G|0.994;A|0.006	154
HIVEP2	3097	hgsc.bcm.edu	37	6	143092668	143092668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HIVEP2	NM_006734	exon5	c.T3208C	p.S1070P	.	.	95	4	78	0	.	95
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71025391	71025391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HKDC1	NM_025130	exon17	c.T2423C	p.L808P	.	.	88	27	76	0	.	95
HMHA1	23526	hgsc.bcm.edu	37	19	1074826	1074826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HMHA1	NM_001258328	exon10	c.A1181G	p.E394G	.	.	73	4	38	0	.	91
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	162911119	162911119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HMMR	NM_001142556	exon16	c.T1830G	p.N610K	.	.	133	9	127	0	.	90
HSD17B3	3293	hgsc.bcm.edu;bcgsc.ca	37	9	99006632	99006632	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HSD17B3	NM_000197	exon9	c.A651G	p.K217K	.	.	75	4	104	0	.	90
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95051645	95051645	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IARS	NM_013417	exon2	c.G57A	p.L19L	.	.	58	4	115	0	.	92
IDE	3416	hgsc.bcm.edu	37	10	94268589	94268589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IDE	NM_004969	exon7	c.T956C	p.I319T	.	.	85	4	105	0	.	92
IGF2BP1	10642	hgsc.bcm.edu	37	17	47103022	47103022	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IGF2BP1	NM_001160423	exon3	c.A279G	p.R93R	.	.	99	4	100	0	.	226
IKBIP	121457	hgsc.bcm.edu	37	12	99007913	99007913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IKBIP	NM_201612	exon3	c.T503C	p.V168A	.	.	79	4	101	0	.	226
INTS5	80789	hgsc.bcm.edu	37	11	62417403	62417403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	INTS5	NM_030628	exon2	c.T149C	p.L50P	.	.	93	4	95	0	.	92
IPPK	64768	hgsc.bcm.edu	37	9	95411768	95411768	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IPPK	NM_022755	exon5	c.A381G	p.A127A	.	.	92	4	118	0	.	92
IQCE	23288	bcgsc.ca	37	7	2632706	2632706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IQCE	NM_152558	exon15	c.T1295C	p.L432P	.	.	193	6	159	0	.	226
ITGB4	3691	hgsc.bcm.edu	37	17	73751906	73751906	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ITGB4	NM_000213	exon35	c.T4683C	p.S1561S	.	.	112	5	63	0	.	227
ITLN2	142683	hgsc.bcm.edu	37	1	160922449	160922449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ITLN2	NM_080878	exon3	c.A154G	p.S52G	.	.	92	4	80	0	.	91
ITPR2	3709	hgsc.bcm.edu	37	12	26568256	26568256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ITPR2	NM_002223	exon51	c.A7286G	p.K2429R	.	.	100	4	87	0	.	542
JAGN1	84522	broad.mit.edu;bcgsc.ca	37	3	9934778	9934778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	JAGN1	NM_032492	exon2	c.T269C	p.L90P	.	.	320	8	476	1	.	91
KAT6A	7994	hgsc.bcm.edu	37	8	41791551	41791551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001099412	exon18	c.A4187G	p.H1396R	.	.	98	4	125	0	.	.
KAT6B	23522	hgsc.bcm.edu	37	10	76735857	76735857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_012330	exon8	c.T1762C	p.F588L	.	.	64	4	86	0	.	.
KAT7	11143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47874270	47874270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_007067	exon3	c.G322T	p.V108F	.	.	121	99	146	0	.	.
KBTBD8	84541	hgsc.bcm.edu	37	3	67049555	67049555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KBTBD8	NM_032505	exon2	c.A167G	p.D56G	.	.	94	4	139	0	.	587
KCNJ6	3763	hgsc.bcm.edu;bcgsc.ca	37	21	38997717	38997717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNJ6	NM_002240	exon4	c.T1016C	p.V339A	.	.	80	4	114	0	.	91
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78669796	78669796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNMA1	NM_001161352	exon25	c.A3075G	p.E1025E	.	.	39	4	61	0	.	93
KDM4B	23030	broad.mit.edu	37	19	5132013	5132013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KDM4B	NM_015015	exon13	c.A1901G	p.D634G	.	.	134	4	117	0	.	226
KDM4B	23030	broad.mit.edu	37	19	5134014	5134014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KDM4B	NM_015015	exon14	c.C2027A	p.A676E	.	.	66	3	45	0	.	226
KDM4D	55693	hgsc.bcm.edu;bcgsc.ca	37	11	94731384	94731384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KDM4D	NM_018039	exon3	c.T848C	p.F283S	.	.	85	5	107	0	.	226
KIAA0100	9703	hgsc.bcm.edu;bcgsc.ca	37	17	26946934	26946934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0100	NM_014680	exon30	c.C5464T	p.R1822W	.	.	82	4	69	0	.	93
KIAA0391	9692	hgsc.bcm.edu;bcgsc.ca	37	14	35593210	35593210	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0391	NM_014672	exon2	c.A759G	p.G253G	.	.	68	4	95	0	.	226
KIAA0947	23379	hgsc.bcm.edu	37	5	5454689	5454689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0947	NM_015325	exon11	c.A629G	p.E210G	.	.	83	4	64	0	.	48
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	37447599	37447599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001144990	exon7	c.T3989A	p.I1330N	.	.	129	6	127	0	.	.
KIAA1244	57221	hgsc.bcm.edu	37	6	138576727	138576727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA1244	NM_020340	exon10	c.T925C	p.C309R	.	.	85	4	86	0	.	228
KIAA2018	205717	hgsc.bcm.edu	37	3	113379962	113379962	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA2018	NM_001009899	exon7	c.T567C	p.T189T	.	.	97	4	98	0	.	93
KIF13A	63971	hgsc.bcm.edu;bcgsc.ca	37	6	17834225	17834225	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF13A	NM_001105567	exon12	c.A1233G	p.E411E	.	.	125	5	115	0	.	137
KIF20B	9585	hgsc.bcm.edu;bcgsc.ca	37	10	91484863	91484863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF20B	NM_016195	exon15	c.A1949G	p.D650G	.	.	74	4	104	0	.	93
KIFAP3	22920	bcgsc.ca	37	1	170004662	170004662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIFAP3	NM_014970	exon6	c.A550G	p.R184G	.	.	154	6	113	0	.	91
KIRREL2	84063	hgsc.bcm.edu;bcgsc.ca	37	19	36353409	36353409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIRREL2	NM_199180	exon12	c.G1525A	p.V509M	.	.	74	4	50	0	.	93
KLF10	7071	hgsc.bcm.edu;bcgsc.ca	37	8	103664250	103664250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLF10	NM_005655	exon3	c.T310C	p.S104P	.	.	87	4	80	0	.	226
KLF15	28999	broad.mit.edu	37	3	126062619	126062619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLF15	NM_014079	exon3	c.A1202G	p.K401R	.	.	381	9	260	6	.	91
KLHDC10	23008	hgsc.bcm.edu;bcgsc.ca	37	7	129762020	129762020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHDC10	NM_014997	exon5	c.T757C	p.S253P	.	.	80	4	87	0	.	90
KLHL11	55175	hgsc.bcm.edu;bcgsc.ca	37	17	40010298	40010298	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHL11	NM_018143	exon2	c.C1821T	p.Y607Y	.	.	81	4	119	0	.	90
KLKB1	3818	hgsc.bcm.edu;bcgsc.ca	37	4	187175807	187175807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLKB1	NM_000892	exon12	c.A1379G	p.D460G	.	.	79	4	136	0	.	227
KRI1	65095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10671691	10671691	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRI1	NM_023008	exon8	c.C669G	p.S223S	.	.	110	26	93	0	.	69
KRIT1	889	hgsc.bcm.edu;bcgsc.ca	37	7	91851228	91851228	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRIT1	NM_194456	exon15	c.A1551G	p.E517E	.	.	73	4	50	0	.	132
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	150001056	150001058	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LATS1	NM_004690	exon5	c.2546_2548del	p.849_850del	.	.	152	116	208	0	.	992
LCA5L	150082	hgsc.bcm.edu	37	21	40782216	40782216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LCA5L	NM_152505	exon8	c.T1138C	p.S380P	.	.	100	4	135	0	.	22
LGI4	163175	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35622722	35622722	+	Silent	SNP	C	C	T	rs191436645		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LGI4	NM_139284	exon5	c.G429A	p.L143L	.	.	147	77	190	1	C|0.999;T|0.001	91
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156108485	156108485	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LMNA	NM_170707	exon11	c.C1905T	p.G635G	.	.	242	50	191	0	.	228
LOC339524	0	bcgsc.ca	37	1	87633904	87633904	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	53	4	80	0	.	.
LOC442028	0	ucsc.edu	37	2	95539093	95539093	+	RNA	SNP	C	C	A	rs112056322		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	19	5	26	0	.	.
LRBA	987	hgsc.bcm.edu	37	4	151773418	151773418	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRBA	NM_006726	exon23	c.T3444C	p.F1148F	.	.	52	4	118	0	.	157
LRIG3	121227	hgsc.bcm.edu	37	12	59274407	59274407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRIG3	NM_153377	exon13	c.A1757G	p.H586R	.	.	119	5	135	0	.	229
LRP4	4038	bcgsc.ca	37	11	46914659	46914659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRP4	NM_002334	exon13	c.T1562C	p.V521A	.	.	54	4	43	0	.	94
LRRC37A11P	342666	bcgsc.ca	37	17	37188214	37188214	+	RNA	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	49	4	71	0	.	.
LRRC37A	9884	broad.mit.edu	37	17	44408907	44408907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRRC37A	NM_014834	exon9	c.C4264T	p.P1422S	.	.	219	4	263	0	.	22
LRRC58	116064	hgsc.bcm.edu	37	3	120053943	120053943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001099678	exon3	c.A673G	p.T225A	.	.	73	4	53	0	.	.
LRRIQ4	344657	hgsc.bcm.edu	37	3	169548290	169548290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001080460	exon3	c.A1205G	p.E402G	.	.	66	4	62	0	.	.
LYST	1130	hgsc.bcm.edu	37	1	235945311	235945311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LYST	NM_000081	exon15	c.A4939G	p.M1647V	.	.	100	4	90	0	.	143
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39751339	39751339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MACF1	NM_012090	exon15	c.C1432A	p.Q478K	.	.	194	153	257	0	.	165
MANEA	79694	hgsc.bcm.edu	37	6	96053973	96053973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MANEA	NM_024641	exon5	c.A1081G	p.I361V	.	.	46	4	59	0	.	155
MARS	4141	hgsc.bcm.edu	37	12	57905511	57905511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MARS	NM_004990	exon12	c.A1399G	p.R467G	.	.	124	5	101	0	.	654
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90428856	90428856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MDN1	NM_014611	exon41	c.A6056G	p.Q2019R	.	.	57	4	60	0	.	100
MED1	5469	hgsc.bcm.edu	37	17	37566928	37566928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MED1	NM_004774	exon17	c.G1546A	p.E516K	.	.	130	6	181	0	.	620
MEPE	56955	hgsc.bcm.edu	37	4	88766777	88766777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MEPE	NM_020203	exon4	c.T757C	p.S253P	.	.	78	4	118	0	.	93
MFN1	55669	hgsc.bcm.edu	37	3	179095207	179095207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MFN1	NM_033540	exon12	c.A1300G	p.N434D	.	.	96	4	107	0	.	155
MIR4751	100616483	ucsc.edu	37	19	50436359	50436359	+	RNA	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	23	5	40	0	.	.
MLL4	8085	bcgsc.ca	37	19	36209282	36209282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MLL4	NM_014727	exon1	c.A362G	p.E121G	.	.	52	4	41	1	.	697
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	104746372	104746372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MLL5	NM_018682	exon18	c.C2518T	p.Q840X	.	.	152	24	154	0	.	93
MMP10	4319	hgsc.bcm.edu	37	11	102641564	102641564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MMP10	NM_002425	exon10	c.T1391C	p.V464A	.	.	96	4	88	0	.	713
MOXD1	26002	hgsc.bcm.edu	37	6	132649228	132649228	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MOXD1	NM_015529	exon6	c.A870G	p.G290G	.	.	102	5	118	0	.	515
MREG	55686	hgsc.bcm.edu	37	2	216861060	216861060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MREG	NM_018000	exon2	c.T224C	p.V75A	.	.	85	5	93	0	.	90
MRPL40	64976	hgsc.bcm.edu	37	22	19422404	19422404	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MRPL40	NM_003776	exon3	c.T283C	p.L95L	.	.	54	4	62	0	.	90
MS4A14	84689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	60184403	60184403	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MS4A14	NM_001261828	exon6	c.G2061A	p.W687X	.	.	89	17	102	0	.	90
MTRF1L	54516	hgsc.bcm.edu;bcgsc.ca	37	6	153313995	153313995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MTRF1L	NM_019041	exon5	c.A802G	p.T268A	.	.	63	4	42	0	.	90
MUC17	140453	bcgsc.ca	37	7	100680100	100680100	+	Silent	SNP	G	G	A	rs142682652	byfrequency	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MUC17	NM_001040105	exon3	c.G5403A	p.S1801S	.	.	144	18	135	6	G|0.994;A|0.006	95
MUC17	140453	bcgsc.ca	37	7	100680117	100680117	+	Missense_Mutation	SNP	T	T	C	rs147353603	byfrequency	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MUC17	NM_001040105	exon3	c.T5420C	p.M1807T	.	.	147	19	124	5	T|0.987;C|0.013	95
MUC17	140453	bcgsc.ca	37	7	100680120	100680120	+	Missense_Mutation	SNP	C	C	A	rs147991653	byfrequency	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MUC17	NM_001040105	exon3	c.C5423A	p.T1808N	.	.	149	18	124	4	C|0.989;A|0.011	95
MUM1	84939	hgsc.bcm.edu	37	19	1360617	1360617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MUM1	NM_032853	exon5	c.T700C	p.S234P	.	.	88	4	80	0	.	90
MYEOV	26579	broad.mit.edu	37	11	69063836	69063836	+	Missense_Mutation	SNP	C	C	A	rs147884839		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYEOV	NM_138768	exon3	c.C919A	p.L307I	.	.	2305	15	65	0	C|1.000;A|0.000	90
MYH9	4627	hgsc.bcm.edu;bcgsc.ca	37	22	36696312	36696312	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYH9	NM_002473	exon24	c.2839-2A>G	.	.	.	60	4	52	0	.	292
MYO7B	4648	broad.mit.edu	37	2	128384849	128384849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYO7B	NM_001080527	exon32	c.T4346C	p.L1449P	.	.	112	4	121	1	.	47
MYOF	26509	hgsc.bcm.edu;bcgsc.ca	37	10	95109578	95109578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYOF	NM_013451	exon36	c.T4070C	p.L1357P	.	.	83	4	147	0	.	93
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41891035	41891035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAA16	NM_001110798	exon2	c.T108C	p.I36I	.	.	81	4	86	0	.	90
NAV3	89795	hgsc.bcm.edu	37	12	78400803	78400803	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	NAV3,rectum,carcinoma,+2	NAV3	NM_014903	exon8	c.T1485C	p.A495A	.	.	49	2	54	0	.	279
NAV3	89795	hgsc.bcm.edu;bcgsc.ca	37	12	78388596	78388596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAV3	NM_014903	exon6	c.T685C	p.Y229H	.	.	56	4	89	0	.	279
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35758164	35758164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NBEA	NM_015678	exon30	c.C4883A	p.A1628D	.	.	126	73	149	0	.	144
NCAPD3	23310	hgsc.bcm.edu	37	11	134072727	134072727	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NCAPD3	NM_015261	exon13	c.A1599G	p.E533E	.	.	97	4	142	0	.	229
NCOR1	9611	hgsc.bcm.edu	37	17	15973762	15973762	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NCOR1	NM_001190440	exon30	c.T4278C	p.P1426P	.	.	85	4	143	0	.	229
NDC80	10403	hgsc.bcm.edu	37	18	2578079	2578079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NDC80	NM_006101	exon5	c.T415C	p.S139P	.	.	102	7	148	0	.	91
NDUFA10	4705	bcgsc.ca	37	2	240929516	240929516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NDUFA10	NM_004544	exon9	c.A974G	p.D325G	.	.	71	4	81	1	.	514
NDUFS1	4719	hgsc.bcm.edu	37	2	207008850	207008850	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NDUFS1	NM_001199984	exon10	c.C921T	p.A307A	.	.	67	4	84	0	.	91
NELL1	4745	hgsc.bcm.edu	37	11	20940817	20940817	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NELL1	NM_006157	exon7	c.T696C	p.D232D	.	.	97	5	117	0	.	155
NFX1	4799	hgsc.bcm.edu;bcgsc.ca	37	9	33351736	33351736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NFX1	NM_147133	exon16	c.T2603C	p.M868T	.	.	54	4	54	0	.	91
NINL	22981	hgsc.bcm.edu	37	20	25442240	25442240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NINL	NM_025176	exon21	c.T3614C	p.L1205P	.	.	94	4	98	0	.	94
NLE1	54475	hgsc.bcm.edu	37	17	33460235	33460235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NLE1	NM_018096	exon12	c.A1400G	p.D467G	.	.	97	4	106	0	.	290
NOTCH2	4853	hgsc.bcm.edu	37	1	120458101	120458101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NOTCH2	NM_024408	exon34	c.T7244C	p.L2415P	.	.	108	5	150	0	.	1441
NOX3	50508	hgsc.bcm.edu	37	6	155775983	155775983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NOX3	NM_015718	exon3	c.A217G	p.S73G	.	.	80	4	60	0	.	91
NR5A2	2494	hgsc.bcm.edu;bcgsc.ca	37	1	199997033	199997033	+	Missense_Mutation	SNP	C	C	T	rs142187332		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NR5A2	NM_003822	exon1	c.A58T	p.M20L	.	.	71	4	56	0	C|1.000;T|0.000	227
NRCAM	4897	hgsc.bcm.edu	37	7	107807498	107807498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NRCAM	NM_001037132	exon27	c.G3334A	p.E1112K	.	.	77	4	95	0	.	156
NRXN1	9378	broad.mit.edu;bcgsc.ca	37	2	50692668	50692668	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NRXN1	NM_001135659	exon18	c.T3396C	p.C1132C	.	.	189	6	158	0	.	92
OPN4	94233	bcgsc.ca	37	10	88421087	88421087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.G1048T	p.A350S	.	.	97	35	112	1	.	69
OPN4	94233	hgsc.bcm.edu	37	10	88421086	88421087	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.1047_1048del	p.349_350del	.	.	94	0	112	0	.	69
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88421086	88421086	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.1047delC	p.I349fs	.	.	94	34	112	0	.	69
OR10A7	121364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55614885	55614885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR10A7	NM_001005280	exon1	c.C77A	p.S26Y	.	.	176	82	263	1	.	72
OR10Q1	219960	bcgsc.ca	37	11	57996287	57996287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR10Q1	NM_001004471	exon1	c.T61C	p.F21L	.	.	190	6	170	2	.	70
OR2K2	26248	hgsc.bcm.edu;bcgsc.ca	37	9	114089950	114089950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR2K2	NM_205859	exon1	c.T764C	p.L255P	.	.	61	4	101	0	.	69
OR4C11	219429	broad.mit.edu	37	11	55371725	55371725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR4C11	NM_001004700	exon1	c.T125C	p.L42P	.	.	133	4	117	0	.	69
OR52B4	143496	hgsc.bcm.edu;bcgsc.ca	37	11	4389188	4389188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR52B4	NM_001005161	exon1	c.A338G	p.E113G	.	.	83	4	101	0	.	90
OR6K2	81448	hgsc.bcm.edu	37	1	158669522	158669522	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR6K2	NM_001005279	exon1	c.T921C	p.G307G	.	.	94	4	104	0	.	69
OSBP	5007	hgsc.bcm.edu	37	11	59347665	59347665	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OSBP	NM_002556	exon11	c.T1860C	p.S620S	.	.	44	4	57	0	.	267
OVOL2	58495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	18022310	18022310	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OVOL2	NM_021220	exon3	c.G379C	p.G127R	.	.	142	6	157	0	.	68
OXCT1	5019	hgsc.bcm.edu;bcgsc.ca	37	5	41794835	41794835	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OXCT1	NM_000436	exon12	c.T1116C	p.T372T	.	.	66	4	46	0	.	133
PA2G4P4	647033	bcgsc.ca	37	3	156527483	156527483	+	RNA	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	57	4	65	0	.	.
PACS1	55690	hgsc.bcm.edu	37	11	66006669	66006669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PACS1	NM_018026	exon21	c.T2350C	p.S784P	.	.	95	5	88	0	.	74
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439078	110439078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAK3	NM_001128168	exon13	c.A1227T	p.Q409H	.	.	58	49	46	0	.	1043
PALD1	27143	hgsc.bcm.edu	37	10	72292498	72292498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_014431	exon6	c.A755G	p.E252G	.	.	79	4	94	0	.	.
PAPOLB	56903	bcgsc.ca	37	7	4899971	4899971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAPOLB	NM_020144	exon1	c.A1471G	p.R491G	.	.	138	5	150	0	.	493
PAQR5	54852	hgsc.bcm.edu;bcgsc.ca	37	15	69672244	69672244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAQR5	NM_001104554	exon4	c.T74C	p.L25P	.	.	90	4	80	0	.	70
PCDH15	65217	hgsc.bcm.edu	37	10	56288150	56288150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDH15	NM_001142763	exon3	c.A104G	p.E35G	.	.	73	4	91	0	.	193
PCDH7	5099	hgsc.bcm.edu	37	4	30724545	30724545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDH7	NM_032457	exon1	c.T1501C	p.F501L	.	.	73	4	62	0	.	229
PCDHA4	56144	hgsc.bcm.edu	37	5	140188502	140188502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHA4	NM_031500	exon1	c.T1730C	p.V577A	.	.	94	4	60	0	.	96
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu	37	5	140605206	140605206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHB14	NM_018934	exon1	c.C2129T	p.A710V	.	.	57	4	34	0	.	91
PCDHGA5	56110	hgsc.bcm.edu	37	5	140744024	140744024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHGA5	NM_032054	exon1	c.T127C	p.S43P	.	.	90	4	108	0	.	35
PCMT1	5110	bcgsc.ca	37	6	150123463	150123463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCMT1	NM_005389	exon7	c.T806C	p.V269A	.	.	149	5	138	1	.	91
PCSK5	5125	hgsc.bcm.edu	37	9	78947423	78947423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCSK5	NM_001190482	exon33	c.A4564G	p.S1522G	.	.	98	4	141	0	.	93
PDCD2	5134	hgsc.bcm.edu	37	6	170886665	170886665	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDCD2	NM_002598	exon6	c.T1017C	p.D339D	.	.	99	4	107	0	.	227
PDE10A	10846	hgsc.bcm.edu;bcgsc.ca	37	6	165863852	165863852	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE10A	NM_001130690	exon5	c.226-2A>G	.	.	.	84	5	100	0	.	519
PDE4DIP	9659	broad.mit.edu	37	1	144855783	144855783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE4DIP	NM_014644	exon41	c.C6770T	p.A2257V	.	.	207	4	163	0	.	663
PDE7A	5150	hgsc.bcm.edu;bcgsc.ca	37	8	66636575	66636575	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE7A	NM_001242318	exon11	c.A1077G	p.K359K	.	.	58	4	73	0	.	90
PDHA1	5160	hgsc.bcm.edu	37	X	19368150	19368150	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDHA1	NM_001173454	exon4	c.A327G	p.V109V	.	.	114	5	114	0	.	227
PGM3	5238	hgsc.bcm.edu;bcgsc.ca	37	6	83889643	83889643	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PGM3	NM_001199917	exon8	c.A915G	p.G305G	.	.	108	5	116	0	.	90
PHYH	5264	hgsc.bcm.edu;bcgsc.ca	37	10	13333891	13333891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PHYH	NM_006214	exon5	c.T436C	p.F146L	.	.	63	4	44	0	.	90
PI15	51050	hgsc.bcm.edu	37	8	75737542	75737542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PI15	NM_015886	exon2	c.A58G	p.S20G	.	.	120	5	131	0	.	515
PIAS1	8554	bcgsc.ca	37	15	68457104	68457104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PIAS1	NM_016166	exon8	c.A970G	p.I324V	.	.	54	4	46	1	.	637
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu	37	7	47849144	47849144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKD1L1	NM_138295	exon51	c.T7613C	p.L2538P	.	.	45	5	45	0	.	145
PKHD1L1	93035	bcgsc.ca	37	8	110451175	110451175	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKHD1L1	NM_177531	exon32	c.A3810G	p.T1270T	.	.	167	6	125	0	.	145
PKN3	29941	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131469012	131469012	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKN3	NM_013355	exon4	c.T432C	p.A144A	.	.	54	5	57	0	.	521
PLAT	5327	hgsc.bcm.edu	37	8	42045063	42045063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PLAT	NM_000930	exon6	c.A392G	p.Q131R	.	.	73	4	69	0	.	226
PLXND1	23129	hgsc.bcm.edu	37	3	129291728	129291728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PLXND1	NM_015103	exon14	c.A2894G	p.N965S	.	.	94	4	66	0	.	90
PMF1	11243	broad.mit.edu	37	1	156206212	156206212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PMF1	NM_001199654	exon4	c.G508T	p.A170S	.	.	309	6	188	1	.	44
POLK	51426	bcgsc.ca	37	5	74879176	74879176	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	POLK	NM_016218	exon8	c.A993G	p.G331G	.	.	188	6	217	0	.	229
POU4F2	5458	hgsc.bcm.edu;bcgsc.ca	37	4	147561644	147561644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	POU4F2	NM_004575	exon2	c.T914C	p.L305P	.	.	51	4	76	0	.	135
PPARGC1A	10891	hgsc.bcm.edu;bcgsc.ca	37	4	23816124	23816124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPARGC1A	NM_013261	exon8	c.T982C	p.S328P	.	.	79	4	100	0	.	230
PPIP5K2	23262	hgsc.bcm.edu;bcgsc.ca	37	5	102490644	102490644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPIP5K2	NM_015216	exon12	c.A1400G	p.E467G	.	.	55	4	68	0	.	92
PPP1R12A	4659	hgsc.bcm.edu;bcgsc.ca	37	12	80191131	80191131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP1R12A	NM_002480	exon16	c.A2136G	p.G712G	.	.	69	4	97	0	.	273
PPP1R16A	84988	hgsc.bcm.edu	37	8	145726669	145726669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP1R16A	NM_032902	exon9	c.C1195T	p.P399S	.	.	7	7	1	0	.	226
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6377634	6377634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP2R2C	NM_181876	exon4	c.T359A	p.I120N	.	.	190	92	208	0	.	1084
PPP3CC	5533	hgsc.bcm.edu;bcgsc.ca	37	8	22333119	22333119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP3CC	NM_001243974	exon3	c.A354G	p.R118R	.	.	85	4	90	0	.	227
PRDM11	56981	hgsc.bcm.edu	37	11	45203337	45203337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRDM11	NM_001256695	exon2	c.A20G	p.E7G	.	.	33	4	27	0	.	91
PREX2	80243	hgsc.bcm.edu	37	8	69002857	69002857	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PREX2	NM_025170	exon20	c.T2157C	p.I719I	.	.	94	4	116	0	.	390
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47207810	47207810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRKD2	NM_016457	exon4	c.G608C	p.S203T	.	.	100	26	106	0	.	759
PRKG2	5593	hgsc.bcm.edu	37	4	82027009	82027009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRKG2	NM_006259	exon15	c.A2021G	p.K674R	.	.	92	4	142	0	.	524
PRPF8	10594	hgsc.bcm.edu	37	17	1585147	1585147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRPF8	NM_006445	exon5	c.T620C	p.F207S	.	.	89	4	127	0	.	525
PRRC2A	7916	hgsc.bcm.edu	37	6	31599888	31599888	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRRC2A	NM_004638	exon16	c.T3438C	p.P1146P	.	.	87	4	90	0	.	156
PSMC6	5706	mdanderson.org	37	14	53180633	53180633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMC6	NM_002806	exon7	c.T518C	p.F173S	.	.	21	3	53	0	.	91
PSMD1	5707	hgsc.bcm.edu;bcgsc.ca	37	2	232028362	232028362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMD1	NM_002807	exon21	c.A2402G	p.Q801R	.	.	75	4	80	0	.	92
PSMD3	5709	hgsc.bcm.edu	37	17	38140566	38140566	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMD3	NM_002809	exon2	c.A240G	p.K80K	.	.	99	4	99	0	.	92
PSME1	5720	hgsc.bcm.edu	37	14	24607958	24607958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSME1	NM_006263	exon11	c.A683G	p.D228G	.	.	69	4	83	0	.	91
PSME4	23198	hgsc.bcm.edu	37	2	54163250	54163250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSME4	NM_014614	exon7	c.A808G	p.I270V	.	.	59	4	67	0	.	275
PTCD3	55037	hgsc.bcm.edu	37	2	86348628	86348628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCD3	NM_017952	exon8	c.A565G	p.N189D	.	.	98	4	116	0	.	91
PTCHD1	139411	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	23411906	23411906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCHD1	NM_173495	exon3	c.A2271T	p.L757F	.	.	86	75	69	1	.	135
PTCHD1	139411	hgsc.bcm.edu	37	X	23411680	23411680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCHD1	NM_173495	exon3	c.T2045C	p.F682S	.	.	80	4	90	0	.	135
PTPRG	5793	hgsc.bcm.edu;bcgsc.ca	37	3	62180755	62180755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRG	NM_002841	exon10	c.T1238C	p.V413A	.	.	80	6	131	0	.	419
PTPRK	5796	hgsc.bcm.edu;bcgsc.ca	37	6	128388889	128388889	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRK	NM_001135648	exon12	c.A1932G	p.R644R	.	.	83	4	97	0	.	231
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9334596	9334596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PZP	NM_002864	exon14	c.A1664G	p.E555G	.	.	123	6	132	0	.	157
QRICH1	54870	bcgsc.ca	37	3	49070153	49070153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	QRICH1	NM_198880	exon8	c.T1949C	p.V650A	.	.	137	6	217	2	.	91
QSOX1	5768	hgsc.bcm.edu;bcgsc.ca	37	1	180163522	180163522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	QSOX1	NM_002826	exon11	c.T1463C	p.L488P	.	.	98	5	130	0	.	91
R3HCC1L	27291	hgsc.bcm.edu;bcgsc.ca	37	10	99991351	99991351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001256619	exon7	c.T1910C	p.L637P	.	.	75	5	123	0	.	.
RACGAP1	29127	hgsc.bcm.edu	37	12	50384062	50384062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RACGAP1	NM_013277	exon19	c.A1888G	p.M630V	.	.	75	5	83	0	.	227
RAD21	5885	hgsc.bcm.edu	37	8	117870613	117870613	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.T459C	p.S153S	.	.	77	4	67	0	.	227
RAD21	5885	hgsc.bcm.edu	37	8	117870655	117870655	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.A417G	p.R139R	.	.	96	4	76	0	.	227
RAD21	5885	hgsc.bcm.edu;bcgsc.ca	37	8	117870690	117870690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.G382T	p.D128Y	.	.	82	4	56	0	.	227
RAD51C	5889	bcgsc.ca	37	17	56787266	56787266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD51C	NM_058216	exon5	c.A752G	p.D251G	.	.	177	6	179	0	.	637
RAD54L	8438	ucsc.edu	37	1	46743642	46743642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD54L	NM_003579	exon17	c.A2023G	p.T675A	.	.	41	4	53	0	.	229
RAN	5901	hgsc.bcm.edu	37	12	131359255	131359255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAN	NM_006325	exon5	c.T412C	p.F138L	.	.	95	4	114	0	.	847
RANBP9	10048	ucsc.edu;bcgsc.ca	37	6	13642747	13642747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RANBP9	NM_005493	exon7	c.G1189A	p.V397I	.	.	43	4	30	0	.	414
RBL2	5934	hgsc.bcm.edu;bcgsc.ca	37	16	53513864	53513864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RBL2	NM_005611	exon19	c.A2842G	p.S948G	.	.	98	4	141	0	.	841
RC3H2	54542	hgsc.bcm.edu;bcgsc.ca	37	9	125613389	125613389	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RC3H2	NM_001100588	exon20	c.A3351G	p.K1117K	.	.	77	5	147	0	.	523
RCCD1	91433	hgsc.bcm.edu	37	15	91500890	91500890	+	Missense_Mutation	SNP	A	A	G	rs75741610		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RCCD1	NM_001017919	exon4	c.A614G	p.E205G	.	.	121	10	99	0	.	90
RCOR3	55758	hgsc.bcm.edu	37	1	211486825	211486825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RCOR3	NM_001136224	exon11	c.T1135C	p.S379P	.	.	127	6	122	0	.	91
RFFL	117584	hgsc.bcm.edu	37	17	33339090	33339090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RFFL	NM_001017368	exon7	c.A989G	p.E330G	.	.	119	4	114	0	.	90
RGS3	5998	hgsc.bcm.edu	37	9	116358041	116358041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RGS3	NM_144488	exon25	c.A3407G	p.K1136R	.	.	77	4	93	0	.	227
RGS6	9628	hgsc.bcm.edu;bcgsc.ca	37	14	72945005	72945005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RGS6	NM_001204424	exon12	c.A822G	p.R274R	.	.	61	4	95	0	.	227
RHBDD1	84236	bcgsc.ca	37	2	227731993	227731993	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RHBDD1	NM_001167608	exon5	c.T525C	p.A175A	.	.	158	5	198	0	.	91
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38958582	38958582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RICTOR	NM_152756	exon24	c.T2383A	p.S795T	.	.	217	93	220	0	.	849
RNASEL	6041	broad.mit.edu;bcgsc.ca	37	1	182545405	182545405	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNASEL	NM_021133	exon6	c.A2025G	p.E675E	.	.	157	6	260	0	.	336
RNASET2	8635	broad.mit.edu	37	6	167366028	167366028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNASET2	NM_003730	exon2	c.A95G	p.H32R	.	.	177	7	205	0	.	90
RNF150	57484	hgsc.bcm.edu	37	4	141888829	141888829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNF150	NM_020724	exon2	c.T683C	p.V228A	.	.	96	4	124	0	.	227
RNF17	56163	hgsc.bcm.edu;bcgsc.ca	37	13	25399863	25399863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNF17	NM_001184993	exon16	c.G2198A	p.C733Y	.	.	45	4	87	0	.	228
RNU6-71	100873774	bcgsc.ca	37	6	56470452	56470452	+	RNA	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	.	.	.	148	6	102	0	.	.
ROR1	4919	hgsc.bcm.edu;bcgsc.ca	37	1	64605903	64605903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ROR1	NM_001083592	exon6	c.T722C	p.V241A	.	.	116	5	162	0	.	1536
RP1	6101	hgsc.bcm.edu;bcgsc.ca	37	8	55542178	55542178	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RP1	NM_006269	exon4	c.T5736C	p.A1912A	.	.	58	4	77	0	.	102
RPL10	6134	hgsc.bcm.edu	37	X	153629200	153629200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RPL10	NM_001256577	exon6	c.T487C	p.F163L	.	.	100	5	82	0	.	130
RPS6KA6	27330	hgsc.bcm.edu;bcgsc.ca	37	X	83389804	83389804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RPS6KA6	NM_014496	exon8	c.A632G	p.H211R	.	.	52	4	58	0	.	615
RTN1	6252	hgsc.bcm.edu	37	14	60070638	60070638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RTN1	NM_021136	exon6	c.T2114C	p.F705S	.	.	43	4	41	0	.	516
RUSC2	9853	broad.mit.edu	37	9	35555100	35555100	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RUSC2	NM_014806	exon3	c.A2058G	p.E686E	.	.	47	4	72	0	.	91
RYR2	6262	hgsc.bcm.edu	37	1	237540721	237540721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RYR2	NM_001035	exon8	c.T562C	p.S188P	.	.	73	4	89	0	.	158
SCIMP	388325	hgsc.bcm.edu	37	17	5124625	5124625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_207103	exon3	c.A166G	p.K56E	.	.	99	4	116	0	.	.
SDAD1	55153	hgsc.bcm.edu;bcgsc.ca	37	4	76882410	76882410	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SDAD1	NM_018115	exon15	c.A1233G	p.E411E	.	.	87	4	142	0	.	91
SEC16B	89866	hgsc.bcm.edu	37	1	177901667	177901667	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SEC16B	NM_033127	exon24	c.A2970G	p.G990G	.	.	143	6	130	0	.	93
SEPN1	57190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26139198	26139198	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SEPN1	.	.	.	.	.	.	94	67	126	0	.	92
SEPT14	346288	bcgsc.ca	37	7	55902171	55902171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_207366	exon6	c.T667C	p.Y223H	.	.	153	5	125	0	.	.
SETBP1	26040	hgsc.bcm.edu	37	18	42533197	42533197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETBP1	NM_015559	exon4	c.A3892G	p.S1298G	.	.	54	4	82	0	.	155
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	150933423	150933423	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETDB1	NM_012432	exon16	c.C2885G	p.S962X	.	.	203	14	139	0	.	228
SETMAR	6419	bcgsc.ca	37	3	4355288	4355288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETMAR	NM_006515	exon2	c.A863G	p.Y288C	.	.	83	5	150	1	.	91
SF1	7536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64534515	64534515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SF1	NM_001178030	exon12	c.C1814T	p.P605L	.	.	74	14	61	0	.	227
SFMBT1	51460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52962211	52962211	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SFMBT1	NM_016329	exon9	c.T1044G	p.P348P	.	.	28	12	48	0	.	91
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	155935693	155935693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_000337	exon4	c.A275T	p.K92I	.	.	63	32	70	0	.	.
SGSM1	129049	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	25263061	25263061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SGSM1	NM_001098497	exon10	c.G928A	p.V310I	.	.	116	8	86	0	.	27
SH3GL1	6455	bcgsc.ca	37	19	4364143	4364143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SH3GL1	NM_003025	exon5	c.A407G	p.K136R	.	.	147	5	179	0	.	659
SHISA5	51246	hgsc.bcm.edu;bcgsc.ca	37	3	48510952	48510952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHISA5	NM_016479	exon5	c.T451C	p.S151P	.	.	91	5	114	0	.	68
SHISA9	729993	hgsc.bcm.edu	37	16	13002438	13002438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001145205	exon2	c.A666G	p.X222W	.	.	96	4	84	0	.	.
SHOC2	8036	hgsc.bcm.edu	37	10	112771425	112771425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHOC2	NM_007373	exon9	c.T1598C	p.L533P	.	.	82	4	99	0	.	524
SHPRH	257218	hgsc.bcm.edu;bcgsc.ca	37	6	146243946	146243946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHPRH	NM_173082	exon19	c.T3584C	p.F1195S	.	.	78	4	91	0	.	92
SHROOM4	57477	hgsc.bcm.edu;bcgsc.ca	37	X	50351123	50351123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHROOM4	NM_020717	exon6	c.A3019G	p.N1007D	.	.	99	5	102	0	.	131
SIGLEC7	27036	hgsc.bcm.edu	37	19	51649119	51649119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SIGLEC7	NM_014385	exon4	c.A768G	p.T256T	.	.	61	4	72	0	.	153
SIPA1L1	26037	ucsc.edu;bcgsc.ca	37	14	72205030	72205030	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SIPA1L1	NM_015556	exon21	c.A5259G	p.E1753E	.	.	24	4	28	0	.	156
SKIDA1	387640	hgsc.bcm.edu;bcgsc.ca	37	10	21806681	21806681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_207371	exon4	c.A71G	p.K24R	.	.	148	6	90	0	.	.
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92790275	92790275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC24A4	NM_153646	exon1	c.G101A	p.C34Y	.	.	90	15	79	0	.	93
SLC25A14	9016	bcgsc.ca	37	X	129492635	129492635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC25A14	NM_003951	exon6	c.A520G	p.S174G	.	.	212	7	209	0	.	131
SLC2A7	155184	hgsc.bcm.edu;ucsc.edu	37	1	9074919	9074919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC2A7	NM_207420	exon7	c.A724G	p.R242G	.	.	37	4	17	0	.	514
SLC39A2	29986	bcgsc.ca	37	14	21469152	21469152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC39A2	NM_014579	exon4	c.T344C	p.F115S	.	.	54	4	123	0	.	92
SLC39A4	55630	bcgsc.ca	37	8	145641513	145641513	+	Missense_Mutation	SNP	A	A	G	rs113225361		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC39A4	NM_017767	exon1	c.T80C	p.V27A	.	.	62	5	53	0	A|0.992;G|0.008	90
SLC46A2	57864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115652239	115652239	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC46A2	NM_033051	exon1	c.C723T	p.P241P	.	.	70	51	92	0	.	90
SLC4A4	8671	bcgsc.ca	37	4	72316928	72316928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC4A4	NM_001098484	exon11	c.A1232G	p.E411G	.	.	69	4	135	1	.	95
SLC5A12	159963	hgsc.bcm.edu	37	11	26708028	26708028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC5A12	NM_178498	exon10	c.T1217C	p.V406A	.	.	76	4	82	0	.	92
SLCO1A2	6579	hgsc.bcm.edu;bcgsc.ca	37	12	21453353	21453353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1A2	NM_134431	exon9	c.A839G	p.D280G	.	.	44	4	64	0	.	157
SLCO1B1	10599	hgsc.bcm.edu;bcgsc.ca	37	12	21392086	21392086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1B1	NM_006446	exon15	c.T2039C	p.V680A	.	.	70	4	67	0	.	97
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	101755554	101755554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO6A1	NM_173488	exon8	c.C1448T	p.A483V	.	.	195	13	243	0	.	96
SMARCA2	6595	hgsc.bcm.edu;bcgsc.ca	37	9	2029231	2029231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMARCA2	NM_139045	exon2	c.T209C	p.M70T	.	.	73	4	103	0	.	653
SMC1B	27127	hgsc.bcm.edu	37	22	45802675	45802675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMC1B	NM_148674	exon3	c.A370G	p.I124V	.	.	95	4	83	0	.	229
SMC5	23137	hgsc.bcm.edu	37	9	72967130	72967130	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMC5	NM_015110	exon25	c.T3189C	p.S1063S	.	.	80	4	102	0	.	229
SNX30	401548	bcgsc.ca	37	9	115613192	115613192	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SNX30	NM_001012994	exon7	c.A1068G	p.E356E	.	.	129	5	148	0	.	68
SPAG17	200162	broad.mit.edu;bcgsc.ca	37	1	118579402	118579402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPAG17	NM_206996	exon24	c.A3424G	p.M1142V	.	.	164	6	203	2	.	158
SPAG9	9043	broad.mit.edu;bcgsc.ca	37	17	49067946	49067946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPAG9	NM_001130528	exon20	c.A2482G	p.T828A	.	.	171	6	172	0	.	659
SPATA22	84690	broad.mit.edu	37	17	3343492	3343492	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPATA22	NM_032598	exon9	c.A1041G	p.K347K	.	.	200	5	341	0	.	90
SPATA2	9825	hgsc.bcm.edu	37	20	48524814	48524814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPATA2	NM_006038	exon2	c.A214G	p.S72G	.	.	116	5	73	0	.	91
SPEN	23013	hgsc.bcm.edu	37	1	16254901	16254901	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPEN	NM_015001	exon11	c.T2166C	p.I722I	.	.	95	4	144	0	.	298
SPINT3	10816	hgsc.bcm.edu;bcgsc.ca	37	20	44144183	44144183	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_006652	exon1	c.A66G	p.E22E	.	.	107	5	100	0	.	.
SPIRE1	56907	hgsc.bcm.edu;bcgsc.ca	37	18	12453092	12453092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPIRE1	NM_001128626	exon14	c.T1822C	p.S608P	.	.	59	4	111	0	.	90
SPN	6693	hgsc.bcm.edu	37	16	29675097	29675097	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPN	NM_001030288	exon2	c.C48T	p.D16D	.	.	100	4	105	0	.	514
SPRY1	10252	hgsc.bcm.edu	37	4	124323669	124323669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPRY1	NM_001258039	exon2	c.A923G	p.E308G	.	.	92	4	132	0	.	660
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca	37	1	158646052	158646052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTA1	NM_003126	exon8	c.A991G	p.T331A	.	.	148	6	128	0	.	142
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66472881	66472881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTBN2	NM_006946	exon14	c.C1866G	p.S622R	.	.	118	73	96	0	.	155
STK38L	23012	bcgsc.ca	37	12	27468270	27468270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STK38L	NM_015000	exon9	c.A824G	p.N275S	.	.	194	6	198	0	.	980
STOX1	219736	hgsc.bcm.edu	37	10	70641820	70641820	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STOX1	NM_001130159	exon2	c.A417G	p.V139V	.	.	85	4	161	0	.	92
STS	412	hgsc.bcm.edu	37	X	7177588	7177588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STS	NM_000351	exon5	c.C596T	p.T199I	.	.	99	4	101	0	.	130
STXBP5L	9515	hgsc.bcm.edu;bcgsc.ca	37	3	120941989	120941989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STXBP5L	NM_014980	exon11	c.A1096G	p.T366A	.	.	60	4	72	0	.	77
SYCP2	10388	hgsc.bcm.edu	37	20	58442784	58442784	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYCP2	NM_014258	exon38	c.A4107G	p.E1369E	.	.	100	4	111	0	.	525
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64519805	64519805	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYNE2	NM_182914	exon48	c.T9174C	p.I3058I	.	.	84	4	146	0	.	164
SYTL2	54843	hgsc.bcm.edu	37	11	85420461	85420461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYTL2	NM_206927	exon7	c.A2927G	p.Y976C	.	.	92	4	97	0	.	137
SYTL5	94122	hgsc.bcm.edu;bcgsc.ca	37	X	37913595	37913595	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYTL5	NM_001163334	exon2	c.T249C	p.A83A	.	.	67	4	45	0	.	131
SZT2	23334	hgsc.bcm.edu;bcgsc.ca	37	1	43890875	43890875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SZT2	NM_015284	exon18	c.A2642G	p.D881G	.	.	77	5	125	0	.	144
TAF2	6873	hgsc.bcm.edu;bcgsc.ca	37	8	120810035	120810035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TAF2	NM_003184	exon7	c.T844C	p.S282P	.	.	95	4	91	0	.	274
TAS2R16	50833	broad.mit.edu	37	7	122635211	122635211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TAS2R16	NM_016945	exon1	c.C478G	p.L160V	.	.	179	5	158	0	.	92
TBC1D17	79735	hgsc.bcm.edu	37	19	50381446	50381446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TBC1D17	NM_024682	exon2	c.A68G	p.K23R	.	.	89	4	77	0	.	90
TCEB3B	51224	hgsc.bcm.edu	37	18	44560140	44560140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TCEB3B	NM_016427	exon1	c.A1496G	p.E499G	.	.	113	5	169	0	.	156
TCTN3	26123	bcgsc.ca	37	10	97446278	97446278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TCTN3	NM_015631	exon7	c.A862G	p.S288G	.	.	163	5	217	0	.	22
TEAD4	7004	hgsc.bcm.edu	37	12	3128294	3128294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TEAD4	NM_003213	exon8	c.T541C	p.S181P	.	.	93	4	120	0	.	90
TENM4	26011	hgsc.bcm.edu	37	11	78467981	78467981	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001098816	exon19	c.T2625C	p.P875P	.	.	98	4	100	0	.	.
TEX2	55852	hgsc.bcm.edu	37	17	62290595	62290595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TEX2	NM_018469	exon2	c.T983C	p.L328P	.	.	100	4	88	0	.	91
TIPARP	25976	bcgsc.ca	37	3	156396005	156396005	+	Silent	SNP	T	T	C	rs151091113		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TIPARP	NM_015508	exon2	c.T519C	p.T173T	.	.	148	5	182	0	T|1.000;C|0.000	523
TMBIM4	51643	hgsc.bcm.edu;bcgsc.ca	37	12	66531841	66531841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMBIM4	NM_016056	exon7	c.T616C	p.S206P	.	.	81	4	114	0	.	515
TMCO2	127391	hgsc.bcm.edu	37	1	40713792	40713792	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMCO2	NM_001008740	exon1	c.C127T	p.L43L	.	.	77	4	104	0	.	91
TMEM132A	54972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60701185	60701185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM132A	NM_017870	exon8	c.C1531T	p.R511C	.	.	69	38	64	0	.	227
TMEM132C	92293	hgsc.bcm.edu	37	12	129189690	129189690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM132C	NM_001136103	exon9	c.A2177G	p.D726G	.	.	45	4	49	0	.	68
TMEM164	84187	hgsc.bcm.edu	37	X	109247199	109247199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM164	NM_032227	exon2	c.A197G	p.E66G	.	.	120	5	114	0	.	193
TMEM209	84928	hgsc.bcm.edu;bcgsc.ca	37	7	129818251	129818251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM209	NM_032842	exon10	c.A1237G	p.R413G	.	.	54	4	60	0	.	92
TNN	63923	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	175067580	175067580	+	Silent	SNP	T	T	G	rs61747978	byfrequency;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TNN	NM_022093	exon9	c.T1968G	p.S656S	.	.	656	57	277	0	T|0.981;C|0.019	138
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	.	.	123	91	191	0	C|1.000;|0.000	70225
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	1	186340129	186340129	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TPR	NM_003292	exon3	c.T303C	p.I101I	.	.	84	4	102	0	.	228
TRAK1	22906	broad.mit.edu;bcgsc.ca	37	3	42234621	42234660	+	Frame_Shift_Del	DEL	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TRAK1	NM_001265608	exon8	c.824_863del	p.275_288del	.	.	84	4	164	0	.	91
TRPM6	140803	bcgsc.ca	37	9	77397332	77397332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TRPM6	NM_017662	exon23	c.T3155C	p.V1052A	.	.	65	5	135	1	.	335
TSNAXIP1	55815	hgsc.bcm.edu	37	16	67859617	67859617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TSNAXIP1	NM_018430	exon8	c.A700G	p.T234A	.	.	80	4	74	0	.	90
TSPYL2	64061	hgsc.bcm.edu	37	X	53115034	53115034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TSPYL2	NM_022117	exon6	c.T1460C	p.V487A	.	.	101	5	87	0	.	130
TTC29	83894	hgsc.bcm.edu	37	4	147860979	147860979	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTC29	NM_031956	exon3	c.T69C	p.P23P	.	.	74	4	175	0	.	90
TTC40	54777	hgsc.bcm.edu	37	10	134732917	134732917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001200049	exon15	c.T1760C	p.V587A	.	.	77	4	105	0	.	.
TTN	7273	bcgsc.ca	37	2	179421689	179421689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon330	c.T88192C	p.S29398P	.	.	165	5	164	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179401122	179401122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon357	c.T100352C	p.V33451A	.	.	99	4	119	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179648880	179648880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon16	c.G2692A	p.V898M	.	.	259	12	256	0	.	636
TYW3	127253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75199081	75199081	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TYW3	NM_001162916	exon1	c.C153T	p.G51G	.	.	43	5	62	0	.	70
U2SURP	23350	hgsc.bcm.edu	37	3	142740318	142740318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	U2SURP	NM_001080415	exon10	c.T773C	p.L258P	.	.	98	4	152	0	.	71
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3102976	3102976	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBOX5	NM_014948	exon3	c.C309T	p.G103G	.	.	102	47	114	0	.	227
UBR4	23352	broad.mit.edu	37	1	19511693	19511693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBR4	NM_020765	exon15	c.C1838A	p.P613Q	.	.	50	3	87	0	.	612
UBTF	7343	hgsc.bcm.edu	37	17	42284734	42284734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBTF	NM_014233	exon21	c.A2171G	p.N724S	.	.	104	5	121	0	.	90
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141484605	141484605	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UCP1	NM_021833	exon3	c.G393A	p.G131G	.	.	72	32	110	0	.	91
ULK4	54986	hgsc.bcm.edu	37	3	41439687	41439687	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ULK4	NM_017886	exon35	c.T3561C	p.Y1187Y	.	.	73	4	115	0	.	297
UNC5D	137970	broad.mit.edu;bcgsc.ca	37	8	35647893	35647893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC5D	NM_080872	exon17	c.G2674T	p.A892S	.	.	78	31	77	1	.	96
UNC79	57578	hgsc.bcm.edu	37	14	94007149	94007149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_020818	exon13	c.T965C	p.L322P	.	.	75	4	91	0	.	.
UNC80	285175	hgsc.bcm.edu;bcgsc.ca	37	2	210761117	210761117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC80	NM_032504	exon27	c.A4363G	p.R1455G	.	.	93	5	98	0	.	90
UROC1	131669	broad.mit.edu	37	3	126226931	126226931	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UROC1	NM_001165974	exon5	c.T419A	p.L140Q	.	.	243	4	168	0	.	91
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126229602	126229602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UROC1	NM_001165974	exon2	c.G162A	p.P54P	.	.	45	9	39	0	.	91
USH1C	10083	hgsc.bcm.edu	37	11	17522671	17522671	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USH1C	NM_153676	exon23	c.A2307G	p.E769E	.	.	79	4	86	0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373462	216373462	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USH2A	NM_007123	exon17	c.T3318C	p.S1106S	.	.	17	10	41	0	.	115
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61571021	61571021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USP34	NM_014709	exon16	c.C2429A	p.A810E	.	.	173	112	196	0	.	579
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	108292166	108292166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VAV3	NM_006113	exon14	c.A1310T	p.D437V	.	.	57	4	108	0	.	1339
VEZT	55591	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	95650962	95650962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VEZT	NM_017599	exon3	c.A205G	p.S69G	.	.	42	4	75	0	.	23
VPS13A	23230	hgsc.bcm.edu	37	9	79986002	79986002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS13A	NM_001018038	exon67	c.C9014T	p.A3005V	.	.	92	4	105	0	.	161
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12403094	12403094	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS13D	NM_015378	exon42	c.A8871G	p.G2957G	.	.	62	4	61	0	.	95
VPS35	55737	hgsc.bcm.edu;bcgsc.ca	37	16	46708512	46708512	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS35	NM_018206	exon9	c.T975C	p.F325F	.	.	77	4	100	0	.	90
VWDE	221806	hgsc.bcm.edu	37	7	12391294	12391294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VWDE	NM_001135924	exon19	c.T3791C	p.L1264P	.	.	92	4	80	0	.	68
WDR1	9948	hgsc.bcm.edu	37	4	10090367	10090367	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WDR1	NM_005112	exon4	c.139-2A>G	.	.	.	70	5	66	0	.	48
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38383676	38383676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_031951	exon4	c.G2550C	p.M850I	.	.	124	7	123	0	.	.
WNT9B	7484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	44953863	44953863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WNT9B	NM_003396	exon4	c.G853T	p.E285X	.	.	137	76	144	0	.	522
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39226588	39226588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	XIRP1	NM_194293	exon2	c.T4349C	p.M1450T	.	.	49	14	64	0	.	158
YTHDC2	64848	hgsc.bcm.edu	37	5	112903376	112903376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	YTHDC2	NM_022828	exon23	c.C3074T	p.A1025V	.	.	90	4	96	0	.	92
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64989571	64989571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZBTB1	NM_014950	exon2	c.G1349T	p.C450F	.	.	62	44	88	0	.	91
ZBTB44	29068	bcgsc.ca	37	11	130131001	130131001	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZBTB44	NM_014155	exon2	c.A768G	p.L256L	.	.	176	6	189	1	.	91
ZC3H12C	85463	bcgsc.ca	37	11	110007789	110007789	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZC3H12C	NM_033390	exon2	c.A423G	p.K141K	.	.	45	4	66	0	.	68
ZC3H14	79882	hgsc.bcm.edu	37	14	89039002	89039002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZC3H14	NM_001160104	exon6	c.T512C	p.V171A	.	.	90	4	131	0	.	93
ZFP1	162239	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	75204019	75204019	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFP1	NM_153688	exon4	c.A1011G	p.S337S	.	.	16	4	34	0	.	92
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68248209	68248209	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFYVE26	NM_015346	exon22	c.T4410C	p.D1470D	.	.	49	4	68	0	.	162
ZNF17	7565	hgsc.bcm.edu;bcgsc.ca	37	19	57932584	57932584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF17	NM_006959	exon3	c.T1724C	p.V575A	.	.	79	4	100	0	.	90
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22155053	22155053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF208	NM_007153	exon4	c.G2783T	p.W928L	.	.	68	13	101	0	.	7
ZNF253	56242	hgsc.bcm.edu	37	19	20003478	20003478	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF253	NM_021047	exon4	c.T1422C	p.H474H	.	.	57	4	59	0	.	90
ZNF280B	140883	broad.mit.edu	37	22	22843556	22843556	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF280B	NM_080764	exon4	c.C168T	p.V56V	.	.	154	4	138	0	.	70
ZNF335	63925	hgsc.bcm.edu	37	20	44586259	44586259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF335	NM_022095	exon17	c.G2408C	p.S803T	.	.	93	4	89	0	.	94
ZNF345	25850	hgsc.bcm.edu;bcgsc.ca	37	19	37368330	37368330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF345	NM_001242476	exon4	c.A598G	p.K200E	.	.	76	4	61	0	.	91
ZNF534	147658	hgsc.bcm.edu	37	19	52938454	52938454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF534	NM_001143939	exon3	c.T302C	p.V101A	.	.	92	4	108	0	.	68
ZNF549	256051	hgsc.bcm.edu;bcgsc.ca	37	19	58048846	58048846	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF549	NM_001199295	exon4	c.A474G	p.K158K	.	.	100	5	117	0	.	91
ZNF749	388567	broad.mit.edu;bcgsc.ca	37	19	57954874	57954874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001023561	exon3	c.C358A	p.L120M	.	.	145	8	144	1	.	.
ZNF836	162962	hgsc.bcm.edu	37	19	52658668	52658668	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF836	NM_001102657	exon5	c.C2268T	p.G756G	.	.	64	4	96	0	.	46
ZNF860	344787	hgsc.bcm.edu;bcgsc.ca	37	3	32030646	32030646	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF860	NM_001137674	exon2	c.T75C	p.T25T	.	.	72	4	135	0	.	1
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	8198174	8198175	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	p.HM229QV	.	.	.	.	.	.	.	
