Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AATK	9625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79094590	79094590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AATK	NM_001080395	exon11	c.G3146A	p.G1049D	.	.	33	5	47	0	.	933
ABCC8	6833	bcgsc.ca	37	11	17496516	17496516	+	Silent	SNP	A	A	G	rs1048099	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ABCC8	NM_000352	exon2	c.T207C	p.P69P	.	.	300	15	317	4	A|0.541;G|0.459	91
ABCD4	5826	broad.mit.edu	37	14	74753419	74753419	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ABCD4	NM_005050	exon18	c.G1737A	p.R579R	.	.	37	12	68	2	.	292
ABLIM3	22885	broad.mit.edu	37	5	148637920	148637920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ABLIM3	NM_014945	exon24	c.G2005T	p.A669S	.	.	38	5	57	2	.	93
ACSF3	197322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89180877	89180877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ACSF3	NM_174917	exon6	c.A1108G	p.T370A	.	.	53	17	87	0	.	68
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	4033250	4033250	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ADCY9	NM_001116	exon7	c.C2502T	p.S834S	.	.	40	13	67	0	.	139
ADORA3	140	bcgsc.ca	37	1	112042632	112042632	+	Silent	SNP	A	A	G	rs2229155	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ADORA3	NM_000677	exon2	c.T897C	p.A299A	.	.	112	6	129	0	A|0.205;G|0.795	156
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	38396047	38396047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ALDH1B1	NM_000692	exon2	c.G302T	p.R101L	.	.	90	28	79	0	.	227
ALPPL2	251	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233272463	233272463	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ALPPL2	NM_031313	exon4	c.C460A	p.R154R	.	.	308	66	356	2	.	91
ANKRD34B	340120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79855469	79855469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ANKRD34B	NM_001004441	exon5	c.T370C	p.Y124H	.	.	128	33	145	0	.	69
ANKRD36	375248	broad.mit.edu	37	2	97884922	97884922	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_001164315	exon66	c.A3894G	p.E1298E	.	.	126	8	105	0	.	.
ANKRD53	79998	broad.mit.edu;bcgsc.ca	37	2	71212129	71212129	+	Missense_Mutation	SNP	A	A	T	rs3796100	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ANKRD53	NM_001115116	exon6	c.A1292T	p.H431L	.	.	60	5	57	0	A|0.828;T|0.172	90
ASXL2	55252	bcgsc.ca	37	2	25973060	25973060	+	Silent	SNP	C	C	T	rs33994557	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ASXL2	NM_018263	exon11	c.G1365A	p.P455P	.	.	83	5	89	1	C|0.968;T|0.032	23
ATOH1	474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	94750441	94750441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ATOH1	NM_005172	exon1	c.G364T	p.V122L	.	.	110	12	132	0	.	90
ATP1A2	477	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160104376	160104376	+	Missense_Mutation	SNP	C	C	T	rs150784486	alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ATP1A2	NM_000702	exon14	c.C1930T	p.R644W	.	.	233	62	194	2	C|1.000;A|0.000	518
AXIN1	8312	bcgsc.ca	37	16	396353	396353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AXIN1	NM_181050	exon2	c.A673C	p.S225R	.	.	56	10	58	0	.	684
AXIN1	8312	hgsc.bcm.edu	37	16	396352	396353	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AXIN1	NM_181050	exon2	c.673_674del	p.225_225del	.	.	56	0	60	0	.	684
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	396352	396352	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	AXIN1	NM_181050	exon2	c.674delG	p.S225fs	.	.	56	10	60	0	.	684
CACNA1B	774	bcgsc.ca	37	9	141008876	141008876	+	Silent	SNP	C	C	T	rs2229948	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CACNA1B	NM_001243812	exon40	c.C5583T	p.F1861F	.	.	63	4	76	0	C|0.503;T|0.497	138
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767459	181767459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CACNA1E	NM_001205293	exon48	c.C6431T	p.P2144L	.	.	34	6	24	0	.	95
CEACAM20	125931	bcgsc.ca	37	19	45016116	45016116	+	Missense_Mutation	SNP	A	A	G	rs8100718	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CEACAM20	NM_001102600	exon10	c.T1534C	p.C512R	.	.	180	7	151	2	A|0.633;G|0.367	67
CEP63	80254	bcgsc.ca	37	3	134225969	134225969	+	Silent	SNP	T	T	C	rs9827878	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CEP63	NM_001042383	exon3	c.T63C	p.C21C	.	.	50	4	51	0	T|0.841;C|0.159	493
CHRNA3	1136	bcgsc.ca	37	15	78909452	78909452	+	Silent	SNP	T	T	C	rs3743075	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CHRNA3	NM_000743	exon4	c.A291G	p.K97K	.	.	95	6	121	1	T|0.387;C|0.613	515
CLIP2	7461	ucsc.edu;bcgsc.ca	37	7	73731810	73731810	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CLIP2	.	.	.	.	.	.	16	4	50	0	.	93
COL12A1	1303	bcgsc.ca	37	6	75834971	75834971	+	Missense_Mutation	SNP	T	T	A	rs35523808	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	COL12A1	NM_004370	exon40	c.A6479T	p.E2160V	.	.	194	7	180	2	T|0.381;A|0.619	142
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71700763	71700763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	COL13A1	NM_001130103	exon34	c.G1865A	p.G622D	.	.	73	21	86	0	.	91
COL15A1	1306	ucsc.edu;bcgsc.ca	37	9	101822220	101822220	+	Silent	SNP	C	C	T	rs4480177	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	COL15A1	NM_001855	exon36	c.C3387T	p.P1129P	.	.	89	20	83	1	C|0.706;T|0.294	96
CST8	10047	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23472345	23472345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	CST8	NM_005492	exon2	c.T41A	p.I14N	.	.	118	16	106	2	.	90
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	223176572	223176572	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DISP1	NM_032890	exon10	c.C1833A	p.T611T	.	.	177	14	150	0	.	68
DNAH12	201625	ucsc.edu;bcgsc.ca	37	3	57528503	57528503	+	Missense_Mutation	SNP	A	A	G	rs9311651	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH12	NM_198564	exon2	c.T95C	p.V32A	.	.	42	4	41	0	A|0.760;G|0.240	47
DNAH1	25981	bcgsc.ca	37	3	52390789	52390789	+	Missense_Mutation	SNP	C	C	T	rs61734640	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH1	NM_015512	exon22	c.C3853T	p.R1285W	.	.	163	6	137	1	C|0.968;T|0.032	67
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196759699	196759699	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH7	NM_018897	exon31	c.4896+1G>T	.	.	.	205	46	195	0	.	102
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	38891940	38891940	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAH8	NM_001206927	exon73	c.10962+2T>C	.	.	.	44	17	44	0	.	615
DNAJB8	165721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128181964	128181964	+	Missense_Mutation	SNP	G	G	A	rs142768827		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DNAJB8	NM_153330	exon3	c.C125T	p.A42V	.	.	209	27	226	1	G|1.000;A|0.000	226
DRD5	1816	ucsc.edu;bcgsc.ca	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DRD5	NM_000798	exon1	c.T964C	p.C322R	.	.	82	12	70	0	T|0.500;C|0.500	91
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56391319	56391319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DST	NM_015548	exon50	c.T10100G	p.L3367R	.	.	108	33	110	0	.	523
DZIP3	9666	broad.mit.edu;mdanderson.org	37	3	108363329	108363329	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	DZIP3	NM_014648	exon14	c.G1460A	p.W487X	.	.	205	14	179	1	.	91
EARS2	124454	bcgsc.ca	37	16	23563501	23563501	+	Silent	SNP	C	C	T	rs7187920	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EARS2	NM_001083614	exon2	c.G264A	p.A88A	.	.	117	5	133	1	C|0.289;T|0.711	90
EDN1	1906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12294540	12294540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EDN1	NM_001955	exon4	c.A436G	p.K146E	.	.	396	117	419	0	.	91
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467871	66467871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	EPHA5	NM_004439	exon3	c.C398T	p.T133I	.	.	41	7	43	0	.	1430
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	56478884	56478884	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ERBB3	NM_001982	exon3	c.A340T	p.K114X	.	.	141	16	128	0	.	1403
F13A1	2162	bcgsc.ca	37	6	6174866	6174866	+	Missense_Mutation	SNP	G	G	A	rs5982	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	F13A1	NM_000129	exon12	c.C1694T	p.P565L	.	.	440	10	350	5	G|0.798;A|0.202	519
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40062634	40062634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	FSIP1	NM_152597	exon3	c.T304C	p.C102R	.	.	42	7	45	0	.	517
FUT5	2527	bcgsc.ca	37	19	5867177	5867177	+	Missense_Mutation	SNP	G	G	A	rs79852809	bycluster	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	FUT5	NM_002034	exon2	c.C560T	p.P187L	.	.	104	6	142	0	A|1.000;|0.000	90
GLCCI1	113263	broad.mit.edu	37	7	8125841	8125841	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GLCCI1	NM_138426	exon8	c.G1317A	p.S439S	.	.	35	3	27	0	.	90
GP6	51206	hgsc.bcm.edu	37	19	55525497	55525497	+	Missense_Mutation	SNP	A	A	G	rs1671150	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GP6	NM_001083899	exon8	c.T1816C	p.F606L	.	.	4	4	0	0	A|0.233;G|0.767	92
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123483491	123483491	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRAMD1B	NM_020716	exon14	c.C1513A	p.R505R	.	.	122	31	107	0	.	69
GRK7	131890	bcgsc.ca	37	3	141497150	141497150	+	Silent	SNP	C	C	T	rs1533501	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRK7	NM_139209	exon1	c.C24T	p.D8D	.	.	177	8	206	1	C|0.953;T|0.047	522
GRM1	2911	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146755132	146755132	+	Missense_Mutation	SNP	G	G	A	rs2941	bycluster;byfrequency;by1000genomes	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRM1	NM_000838	exon9	c.G2785A	p.V929I	.	.	57	22	52	0	G|0.988;A|0.012	1080
GRM6	2916	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178413890	178413890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	GRM6	NM_000843	exon7	c.C1449A	p.S483R	.	.	101	23	107	1	.	588
H2AFV	94239	ucsc.edu	37	7	44874113	44874113	+	Missense_Mutation	SNP	T	T	C	rs1802437	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	H2AFV	NM_012412	exon5	c.A374G	p.Q125R	.	.	43	8	66	1	T|0.997;C|0.003	90
HDHD1	8226	bcgsc.ca	37	X	6995438	6995438	+	Silent	SNP	C	C	T	rs1803675	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	HDHD1	NM_001135565	exon4	c.G402A	p.L134L	.	.	100	5	68	0	C|0.723;T|0.277	130
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185992215	185992215	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	HMCN1	NM_031935	exon36	c.T5679C	p.A1893A	.	.	150	28	142	0	.	113
KHNYN	23351	bcgsc.ca	37	14	24901249	24901249	+	Missense_Mutation	SNP	A	A	C	rs3742520	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	KHNYN	NM_015299	exon3	c.A782C	p.K261T	.	.	248	7	361	3	A|0.599;C|0.401	93
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158059547	158059547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	KIRREL	NM_018240	exon10	c.T1211C	p.V404A	.	.	228	43	187	0	.	91
KLF17	128209	bcgsc.ca	37	1	44595113	44595113	+	Missense_Mutation	SNP	G	G	C	rs2429051	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	KLF17	NM_173484	exon2	c.G170C	p.S57T	.	.	91	6	111	1	G|0.480;C|0.520	92
KLK6	5653	bcgsc.ca	37	19	51465096	51465096	+	Silent	SNP	C	C	G	rs1701950	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	KLK6	NM_001012964	exon5	c.G486C	p.L162L	.	.	117	5	173	1	C|0.883;G|0.117	650
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54756260	54756260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LILRB5	NM_001081442	exon11	c.C1545A	p.S515R	.	.	55	10	77	0	.	92
LNP1	348801	bcgsc.ca	37	3	100170628	100170628	+	Silent	SNP	A	A	G	rs9844083	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LNP1	NM_001085451	exon3	c.A222G	p.Q74Q	.	.	73	9	78	0	A|0.500;G|0.500	22
LNP1	348801	bcgsc.ca	37	3	100170634	100170634	+	Silent	SNP	T	T	C	rs9848109	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LNP1	NM_001085451	exon3	c.T228C	p.F76F	.	.	71	9	79	0	T|0.500;C|0.500	22
LONRF3	79836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118145797	118145797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LONRF3	NM_001031855	exon8	c.A1672G	p.I558V	.	.	103	28	147	0	.	289
LRFN2	57497	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	40360440	40360440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LRFN2	NM_020737	exon3	c.A1612G	p.I538V	.	.	72	17	86	1	.	93
LTBP4	8425	ucsc.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	LTBP4	.	.	.	.	.	.	27	4	36	2	.	93
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	149226010	149226010	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MBD5	NM_018328	exon9	c.T498C	p.N166N	.	.	131	9	105	0	.	95
MGA	23269	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42059142	42059142	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MGA	NM_001164273	exon24	c.C8862A	p.L2954L	.	.	92	13	80	2	.	522
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	131208896	131208896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MRPL3	NM_007208	exon5	c.G497A	p.R166Q	.	.	64	12	42	0	.	90
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11298100	11298100	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MTOR	NM_004958	exon13	c.G2008C	p.D670H	.	.	160	50	161	0	.	1439
MTUS1	57509	bcgsc.ca	37	8	17611886	17611886	+	Silent	SNP	G	G	A	rs2979788	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	MTUS1	NM_001001924	exon2	c.C1431T	p.P477P	.	.	117	5	105	0	G|0.311;A|0.689	92
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1262923	1262923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_002458	exon31	c.G4813A	p.G1605R	.	.	102	24	132	0	.	.
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	181	49	212	1	A|0.500;T|0.500	90
NRTN	4902	hgsc.bcm.edu	37	19	5828150	5828150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	NRTN	NM_004558	exon2	c.A560C	p.H187P	.	.	10	6	5	0	.	90
OR2T2	401992	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248616426	248616426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	OR2T2	NM_001004136	exon1	c.G328A	p.G110R	.	.	1212	57	915	1	.	23
PCK1	5105	hgsc.bcm.edu;bcgsc.ca	37	20	56137828	56137828	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PCK1	NM_002591	exon4	c.483delG	p.T161fs	.	.	141	29	138	0	.	227
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41966919	41966919	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PDZRN4	NM_001164595	exon10	c.C2338G	p.Q780E	.	.	136	21	114	0	.	296
PI16	221476	bcgsc.ca	37	6	36931162	36931162	+	Silent	SNP	A	A	G	rs2296934	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PI16	NM_001199159	exon6	c.A1044G	p.E348E	.	.	134	6	122	0	A|0.391;G|0.609	90
PIEZO1	9780	broad.mit.edu	37	16	88782079	88782079	+	Silent	SNP	G	G	A	rs1061228	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_001142864	exon51	c.C7500T	p.Y2500Y	.	.	75	4	109	0	T|0.090;G|0.174;C|0.710;A|0.025	.
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47886599	47886599	+	Silent	SNP	A	A	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PKD1L1	NM_138295	exon32	c.T5031G	p.A1677A	.	.	181	52	193	0	.	145
PLA2G4E	123745	hgsc.bcm.edu;bcgsc.ca	37	15	42285005	42285005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_001206670	exon13	c.G1400A	p.S467N	.	.	74	7	114	0	.	.
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	28761221	28761221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLB1	NM_001170585	exon10	c.G624A	p.M208I	.	.	33	13	42	0	.	141
PLEKHG4B	153478	bcgsc.ca	37	5	163205	163205	+	Silent	SNP	G	G	C	rs3810870	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLEKHG4B	NM_052909	exon11	c.G1950C	p.A650A	.	.	230	8	199	2	G|0.561;C|0.439	228
PLEKHH1	57475	bcgsc.ca	37	14	68045935	68045935	+	Silent	SNP	G	G	A	rs6573781	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLEKHH1	NM_020715	exon21	c.G2934A	p.S978S	.	.	107	5	101	0	G|0.331;A|0.669	22
PLEKHM2	23207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16060357	16060357	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PLEKHM2	NM_015164	exon20	c.C2988T	p.S996S	.	.	182	50	265	0	.	23
PNPLA3	80339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44328955	44328955	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PNPLA3	NM_025225	exon4	c.C684T	p.P228P	.	.	121	22	80	0	.	90
POTEH	23784	broad.mit.edu;bcgsc.ca	37	22	16279236	16279236	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	POTEH	NM_001136213	exon4	c.C987A	p.I329I	.	.	1287	42	1105	3	.	1
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39379463	39379463	+	Missense_Mutation	SNP	C	C	A	rs150071017	byfrequency;alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	POU6F2	NM_007252	exon6	c.C734A	p.A245E	.	.	75	14	59	0	C|0.994;T|0.006	90
PPAP2C	8612	bcgsc.ca	37	19	288062	288062	+	Silent	SNP	G	G	A	rs11542542	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PPAP2C	NM_177543	exon2	c.C225T	p.H75H	.	.	196	7	275	1	G|0.935;A|0.065	90
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67166225	67166225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PPP1CA	NM_001008709	exon6	c.A883G	p.S295G	.	.	76	5	104	0	.	659
PPP2R3B	28227	bcgsc.ca	37	X	322161	322161	+	Silent	SNP	A	A	G	rs3813594	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PPP2R3B	NM_013239	exon2	c.T489C	p.D163D	.	.	504	11	654	12	G|0.600;A|0.400	136
PSG8	440533	ucsc.edu	37	19	43269705	43269705	+	Missense_Mutation	SNP	G	G	A	rs7245423	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PSG8	NM_001130168	exon1	c.C29T	p.T10I	.	.	36	4	38	0	G|0.635;A|0.365	90
PSG8	440533	ucsc.edu;bcgsc.ca	37	19	43269704	43269704	+	Silent	SNP	T	T	C	rs62112127	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PSG8	NM_001130168	exon1	c.A30G	p.T10T	.	.	36	4	37	0	T|0.624;C|0.376	90
PTBP2	58155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97250800	97250800	+	Silent	SNP	A	A	G	rs142048957	byfrequency;alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	PTBP2	NM_021190	exon8	c.A894G	p.T298T	.	.	74	21	81	1	A|1.000;T|0.000	90
RABGGTA	5875	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24737122	24737122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_004581	exon12	c.C1190A	p.P397H	.	.	158	25	189	1	.	.
REEP2	51308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137780443	137780443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	REEP2	NM_016606	exon5	c.G304C	p.E102Q	.	.	109	24	121	0	.	90
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33493213	33493213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	RHPN2	NM_033103	exon9	c.G1045A	p.A349T	.	.	192	22	194	0	.	516
RPS29	6235	bcgsc.ca	37	14	50053056	50053079	+	Frame_Shift_Del	DEL	GTGACCCATCTTGCTCTCAGCAGT	GTGACCCATCTTGCTCTCAGCAGT	-	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	GTGACCCATCTTGCTCTCAGCAGT	GTGACCCATCTTGCTCTCAGCAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	RPS29	NM_001032	wholegene			.	.	88	4	95	0	.	90
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	RRN3	NM_018427	exon1	c.C31T	p.P11S	.	.	108	6	145	1	G|0.997;A|0.003	91
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	RRN3	NM_018427	exon1	c.C25T	p.R9C	.	.	102	6	139	1	G|0.997;A|0.003	91
SERPINA9	327657	bcgsc.ca	37	14	94929541	94929541	+	Silent	SNP	G	G	A	rs2224418	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SERPINA9	NM_175739	exon5	c.C1197T	p.G399G	.	.	257	9	316	3	G|0.309;A|0.691	226
SERTAD4	56256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210412936	210412936	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SERTAD4	NM_019605	exon3	c.A274T	p.S92C	.	.	186	65	140	0	.	92
SHROOM1	134549	broad.mit.edu	37	5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SHROOM1	NM_133456	exon1	c.C898A	p.P300T	.	.	69	7	59	2	.	91
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39433444	39433444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SLC25A38	NM_017875	exon5	c.T557G	p.L186R	.	.	184	31	156	0	.	90
SOS2	6655	bcgsc.ca	37	14	50606707	50606707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SOS2	NM_006939	exon17	c.A2738G	p.Y913C	.	.	130	5	120	0	.	849
SRSF6	6431	bcgsc.ca	37	20	42087079	42087079	+	Silent	SNP	C	C	G	rs147967864		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SRSF6	NM_006275	exon2	c.C186G	p.G62G	.	.	34	6	41	0	C|0.973;G|0.027	289
STYXL1	51657	bcgsc.ca	37	7	75630274	75630274	+	Silent	SNP	T	T	C	rs8565	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	STYXL1	NM_016086	exon8	c.A744G	p.Q248Q	.	.	226	9	260	1	T|0.317;C|0.683	278
SUSD1	64420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114911630	114911630	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SUSD1	NM_022486	exon3	c.A267T	p.T89T	.	.	118	22	141	1	.	90
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113137703	113137703	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SVEP1	NM_153366	exon46	c.G10545A	p.V3515V	.	.	173	28	180	0	.	75
SYTL1	84958	bcgsc.ca	37	1	27680292	27680292	+	Silent	SNP	A	A	G	rs8533	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	SYTL1	NM_001193308	exon15	c.A1638G	p.E546E	.	.	251	9	319	6	A|0.367;G|0.633	91
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115987675	115987675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TDRD1	NM_198795	exon24	c.T3410C	p.M1137T	.	.	42	10	51	0	.	90
TGM6	343641	bcgsc.ca	37	20	2375262	2375262	+	Missense_Mutation	SNP	A	A	G	rs2076405	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TGM6	NM_198994	exon2	c.A172G	p.M58V	.	.	85	6	82	0	T|0.031;G|0.699	94
THADA	63892	bcgsc.ca	37	2	43625184	43625184	+	Missense_Mutation	SNP	T	T	A	rs33979934	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	THADA	NM_001083953	exon29	c.A4153T	p.T1385S	.	.	163	7	209	2	A|0.209;T|0.791	228
TNFSF13	8741	bcgsc.ca	37	17	7462555	7462555	+	Missense_Mutation	SNP	G	G	A	rs11552708	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TNFSF13	NM_001198623	exon1	c.G199A	p.G67R	.	.	129	5	199	0	G|0.856;A|0.144	227
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114462308	114462308	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRIM36	NM_018700	exon10	c.G2079A	p.V693V	.	.	129	31	120	0	.	725
TRIM49B	283116	bcgsc.ca	37	11	49055735	49055735	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	.	NM_001206626	exon3	c.A545T	p.E182V	.	.	674	93	616	3	.	.
TRIO	7204	ucsc.edu;bcgsc.ca	37	5	14358336	14358336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRIO	NM_007118	exon12	c.A2096G	p.Y699C	.	.	287	61	286	3	.	562
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	31318460	31318460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRPM1	NM_001252020	exon26	c.G3562A	p.D1188N	.	.	38	5	43	0	.	94
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73426150	73426150	+	Silent	SNP	C	C	A	rs200079844	alternate_allele	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TRPM3	NM_001007470	exon7	c.G525T	p.P175P	.	.	144	30	122	0	C|0.999;T|0.000	521
TTLL4	9654	bcgsc.ca	37	2	219602499	219602499	+	Missense_Mutation	SNP	G	G	C	rs3731877	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	TTLL4	NM_014640	exon3	c.G100C	p.E34Q	.	.	191	6	171	2	G|0.525;C|0.475	93
UBASH3B	84959	hgsc.bcm.edu	37	11	122647740	122647740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UBASH3B	NM_032873	exon3	c.C224T	p.S75F	.	.	96	4	125	0	.	68
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	56590709	56590709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UBQLN2	NM_013444	exon1	c.C403G	p.P135A	.	.	127	19	138	0	.	131
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210680056	210680056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	UNC80	NM_182587	exon9	c.C1276A	p.L426M	.	.	91	12	50	0	.	90
WDPCP	51057	broad.mit.edu	37	2	63609089	63609089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	WDPCP	NM_015910	exon11	c.G1576A	p.A526T	.	.	81	4	69	1	.	91
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113092280	113092280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	WDR52	NM_001164496	exon18	c.C2422T	p.P808S	.	.	89	9	99	0	.	90
WNT2	7472	broad.mit.edu	37	7	116918397	116918397	+	Missense_Mutation	SNP	G	G	A	rs148046128	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	WNT2	NM_003391	exon5	c.C895T	p.R299W	.	.	111	4	107	0	G|0.999;A|0.001	1011
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72021636	72021636	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZFC3H1	NM_144982	exon21	c.A4025T	p.N1342I	.	.	76	11	91	0	.	138
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu	37	19	22156012	22156012	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF208	NM_007153	exon4	c.C1824A	p.P608P	.	.	28	5	30	0	.	7
ZNF212	7988	bcgsc.ca	37	7	148947279	148947279	+	Silent	SNP	A	A	G	rs11769362	byfrequency	TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF212	NM_012256	exon2	c.A54G	p.L18L	.	.	63	4	108	0	A|0.946;G|0.054	91
ZNF267	10308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31926823	31926823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF267	NM_003414	exon4	c.G1253A	p.R418H	.	.	34	11	35	0	.	138
ZNF551	90233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58198623	58198623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UC-01A-11D-A28X-10	TCGA-CC-A5UC-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	14c093b0-daba-46f0-9fee-73efbe76cc2b	0e3769b2-9456-4937-bd2b-27960a8ab40c	.	ZNF551	NM_138347	exon3	c.G980C	p.R327T	.	.	75	23	77	0	.	91
