Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20698148	20698148	+	Missense_Mutation	SNP	G	G	T	rs199505251	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon14	c.G1556T	p.G519V	.	.	25	11	55	0	G|0.999;A|0.001	158
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20762841	20762841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon21	c.A2624T	p.K875M	.	.	44	6	77	0	.	158
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95822825	95822825	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCC4	NM_005845	exon14	c.G1785C	p.Q595H	.	.	44	19	47	0	.	515
ABHD16A	7920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31660873	31660873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABHD16A	NM_021160	exon7	c.A557T	p.E186V	.	.	69	53	80	0	.	91
ADAMTS13	11093	broad.mit.edu	37	9	136302900	136302900	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADAMTS13	NM_139027	exon13	c.C1467T	p.A489A	.	.	70	9	87	2	.	229
ADAMTSL1	92949	broad.mit.edu;bcgsc.ca	37	9	18776974	18776974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADAMTSL1	NM_001040272	exon19	c.A2747T	p.Q916L	.	.	69	54	89	2	.	230
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25141705	25141705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADCY3	NM_004036	exon1	c.G152T	p.R51L	.	.	138	41	146	1	.	94
ADORA3	140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112045693	112045693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADORA3	NM_020683	exon1	c.A284T	p.H95L	.	.	201	84	339	2	.	156
AGAP4	119016	broad.mit.edu	37	10	46322078	46322078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	AGAP4	NM_133446	exon7	c.G1277A	p.C426Y	.	.	63	50	70	0	.	23
AKAP17A	8227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	1718233	1718233	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	AKAP17A	NM_005088	exon4	c.G1060T	p.E354X	.	.	65	40	178	0	.	40
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73678026	73678026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ALMS1	NM_015120	exon8	c.G4369T	p.A1457S	.	.	124	75	91	0	.	142
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139909162	139909162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANKHD1	NM_017747	exon29	c.A6631T	p.N2211Y	.	.	93	41	123	0	.	185
ANKRD20A9P	284232	ucsc.edu	37	13	19445918	19445918	+	RNA	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	22	15	19	0	.	.
ANO9	338440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	428381	428381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANO9	NM_001012302	exon14	c.T1199A	p.V400E	.	.	101	30	133	1	.	227
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27107029	27107029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARID1A	NM_006015	exon20	c.A6640T	p.S2214C	.	.	90	38	124	0	.	584
ARX	170302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	25033712	25033712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARX	NM_139058	exon1	c.A143T	p.Q48L	.	.	48	40	132	0	.	130
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155449286	155449286	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASH1L	NM_018489	exon3	c.A3375T	p.A1125A	.	.	186	52	142	0	.	234
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97484710	97484710	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASNS	NM_133436	exon9	c.A1092T	p.G364G	.	.	45	13	32	0	.	91
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31320038	31320038	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASXL3	NM_030632	exon11	c.A2670T	p.T890T	.	.	50	21	53	0	.	49
ATAD2	29028	broad.mit.edu;ucsc.edu	37	8	124361592	124361592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATAD2	NM_014109	exon14	c.T1739C	p.I580T	.	.	127	18	73	1	.	92
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108114838	108114838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATM	NM_000051	exon6	c.T655A	p.C219S	.	.	39	14	54	0	.	3419
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160803895	160803895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	B3GALNT1	NM_001038628	exon8	c.A648T	p.R216S	.	.	26	5	28	0	.	91
BRD7	29117	broad.mit.edu	37	16	50368683	50368683	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	BRD7	NM_013263	exon7	c.A826T	p.R276X	.	.	44	38	63	2	.	90
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79989645	79989645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	BRWD3	NM_153252	exon11	c.A1058T	p.E353V	.	.	63	6	81	0	.	134
C17orf47	284083	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	56621179	56621179	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C17orf47	NM_001038704	exon1	c.T369A	p.V123V	.	.	165	103	158	1	.	135
C19orf69	100170765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41949136	41949136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001130514	exon1	c.C62A	p.P21H	.	.	24	10	26	0	.	.
C8orf58	541565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22458397	22458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C8orf58	NM_001013842	exon2	c.G43T	p.G15W	.	.	64	42	76	0	.	91
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114500592	114500592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C9orf84	NM_173521	exon10	c.T1193A	p.I398K	.	.	63	29	43	0	.	92
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201060850	201060850	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CACNA1S	NM_000069	exon5	c.C612T	p.L204L	.	.	220	32	211	0	.	94
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54118967	54118967	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CALCOCO1	NM_020898	exon2	c.A60T	p.V20V	.	.	246	146	230	0	.	91
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2984108	2984108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CARD11	NM_032415	exon5	c.A422T	p.Q141L	.	.	79	33	102	0	.	870
CATSPERD	257062	broad.mit.edu	37	19	5778670	5778670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_152784	exon22	c.G2380C	p.G794R	.	.	68	4	191	2	.	.
CC2D1A	54862	bcgsc.ca	37	19	14040896	14040896	+	Missense_Mutation	SNP	G	G	A	rs11669628	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CC2D1A	NM_017721	exon27	c.G2716A	p.A906T	.	.	38	4	88	0	A|0.141;G|0.858;T|0.000	90
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	43055011	43055011	+	Missense_Mutation	SNP	G	G	A	rs145632548		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC30	NM_001080850	exon9	c.G1240A	p.V414I	.	.	46	18	67	0	G|1.000;A|0.000	90
CCDC42B	387885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113587689	113587689	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001144872	exon1	c.C27T	p.F9F	.	.	82	48	62	0	.	.
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91787522	91787522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC88C	NM_001080414	exon13	c.A1469T	p.E490V	.	.	97	22	110	0	.	25
CCR1	1230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46244963	46244963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR1	NM_001295	exon2	c.T842A	p.L281Q	.	.	131	77	114	0	.	660
CCR7	1236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38711550	38711550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR7	NM_001838	exon3	c.T581A	p.L194H	.	.	139	76	120	2	.	659
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80997175	80997175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CEP128	NM_152446	exon21	c.T2936G	p.L979R	.	.	68	38	71	0	.	91
CHADL	150356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41632548	41632548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHADL	NM_138481	exon4	c.A2003T	p.E668V	.	.	108	41	164	0	.	68
CHD5	26038	bcgsc.ca	37	1	6209363	6209363	+	Silent	SNP	T	T	C	rs12565328	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHD5	NM_015557	exon8	c.A1104G	p.V368V	.	.	114	6	139	1	T|0.543;C|0.457	719
CHD5	26038	bcgsc.ca	37	1	6211183	6211183	+	Silent	SNP	G	G	A	rs9434711	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHD5	NM_015557	exon7	c.C903T	p.F301F	.	.	57	4	83	1	G|0.588;A|0.412	719
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765635	61765635	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHD7	NM_017780	exon31	c.C6351T	p.L2117L	.	.	182	50	176	0	.	141
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	125514071	125514071	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHEK1	NM_001244846	exon10	c.A1009T	p.K337X	.	.	77	39	66	0	.	1509
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	383657	383657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHL1	NM_001253388	exon5	c.G571T	p.A191S	.	.	340	174	229	0	.	583
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1511413	1511413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CLCN7	NM_001287	exon4	c.A344T	p.N115I	.	.	59	26	68	0	.	92
CMYA5	202333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79057643	79057643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CMYA5	NM_153610	exon8	c.A11270T	p.E3757V	.	.	70	37	100	1	.	77
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	135095305	135095305	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CNOT4	NM_001190850	exon7	c.A781T	p.K261X	.	.	63	30	78	0	.	90
COL16A1	1307	bcgsc.ca	37	1	32149721	32149721	+	Missense_Mutation	SNP	G	G	C	rs34976864		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	COL16A1	NM_001856	exon32	c.C2272G	p.P758A	.	.	176	8	199	3	G|0.052;C|0.948	98
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238275833	238275833	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	COL6A3	NM_004369	exon11	c.T4997A	p.V1666E	.	.	123	79	134	2	.	526
CRABP2	1382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156670823	156670823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CRABP2	NM_001199723	exon3	c.A92T	p.K31M	.	.	116	31	77	0	.	91
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34038176	34038176	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CSMD2	NM_052896	exon51	c.C7698T	p.G2566G	.	.	87	35	107	0	.	103
CSPG4	1464	bcgsc.ca	37	15	75979782	75979782	+	Silent	SNP	G	G	T	rs8030131	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CSPG4	NM_001897	exon3	c.C3624A	p.R1208R	.	.	103	5	160	0	G|0.567;T|0.433	229
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	bycluster	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98A	p.S33Y	.	.	145	44	139	0	.	24361
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	16877186	16877186	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CUBN	NM_001081	exon64	c.A10189T	p.R3397X	.	.	242	68	80	0	.	166
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83126557	83126557	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CYLC1	NM_021118	exon3	c.G156A	p.L52L	.	.	58	35	99	0	.	112
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35280290	35280290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DEF6	NM_022047	exon4	c.A635T	p.E212V	.	.	93	76	167	0	.	227
DNAH2	146754	broad.mit.edu;bcgsc.ca	37	17	7699791	7699791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH2	NM_020877	exon49	c.A7684G	p.I2562V	.	.	70	60	95	1	.	102
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13830159	13830159	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH5	NM_001369	exon37	c.T6225A	p.P2075P	.	.	233	44	163	0	.	182
DSPP	1834	bcgsc.ca	37	4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	rs202222170		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DSPP	NM_014208	exon5	c.A3185G	p.D1062G	.	.	602	29	682	13	.	90
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DSPP	NM_014208	exon5	c.C3456T	p.D1152D	.	.	552	33	625	13	.	90
DTNB	1838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25705696	25705696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DTNB	NM_021907	exon10	c.A1048G	p.M350V	.	.	111	76	96	0	.	137
EIF2B2	8892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75469779	75469779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF2B2	NM_014239	exon1	c.G86C	p.R29P	.	.	222	67	202	2	.	91
EIF3F	8665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8017529	8017529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF3F	NM_003754	exon8	c.A1034T	p.Q345L	.	.	62	16	57	0	.	500
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184039550	184039550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF4G1	NM_001194946	exon11	c.C1199G	p.P400R	.	.	155	96	195	0	.	344
ELFN2	114794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37771020	37771020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELFN2	NM_052906	exon3	c.C555A	p.N185K	.	.	118	43	181	0	.	70
ELL2	22936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95242487	95242487	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELL2	NM_012081	exon6	c.482-1G>C	.	.	.	88	34	104	1	.	90
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144943295	144943295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EPPK1	NM_031308	exon1	c.A4127T	p.Q1376L	.	.	100	41	51	0	.	25
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212812232	212812232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERBB4	NM_001042599	exon3	c.A344T	p.Y115F	.	.	94	58	97	0	.	1461
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71425152	71425152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERCC6L	NM_017669	exon2	c.C3465A	p.N1155K	.	.	49	39	59	0	.	93
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23711862	23711862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERN2	NM_033266	exon13	c.A1667T	p.E556V	.	.	59	34	58	0	.	322
FAM195A	84331	bcgsc.ca	37	16	697866	697866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FAM195A	NM_138418	exon4	c.C394A	p.P132T	.	.	72	29	94	2	.	90
FAM86HP	729375	ucsc.edu;bcgsc.ca	37	3	129818172	129818172	+	RNA	SNP	C	C	A	rs1129526	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	856	233	839	0	.	.
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80049390	80049390	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FASN	NM_004104	exon9	c.G1200A	p.V400V	.	.	128	36	157	0	.	90
FBLN2	2199	hgsc.bcm.edu	37	3	13670765	13670766	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.2815_2816del	p.939_939del	.	.	106	0	110	0	.	91
FBLN2	2199	hgsc.bcm.edu;bcgsc.ca	37	3	13670761	13670761	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.T2811C	p.F937F	.	.	107	60	112	0	.	91
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	13670764	13670765	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.2814_2815del	p.938_939del	.	.	107	54	110	0	.	91
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928539	15928539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBXL7	NM_012304	exon3	c.A668T	p.Y223F	.	.	246	53	153	0	.	228
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157767574	157767574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FCRL1	NM_001159397	exon8	c.A1034T	p.Q345L	.	.	202	33	125	0	.	153
FGF10	2255	broad.mit.edu	37	5	44388521	44388521	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FGF10	NM_004465	exon1	c.C264G	p.Y88X	.	.	180	5	122	0	.	522
FLG	2312	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152279631	152279631	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FLG	NM_002016	exon3	c.A7731C	p.S2577S	.	.	327	76	213	1	.	106
FMN1	342184	bcgsc.ca;mdanderson.org	37	15	33194233	33194233	+	Missense_Mutation	SNP	T	T	A	rs199507823		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FMN1	NM_001103184	exon9	c.A2717T	p.H906L	.	.	32	26	35	1	.	23
FOLR3	2352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71847147	71847147	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	206	71	354	0	.	.
FOLR3	2352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71850783	71850783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	128	54	174	0	.	.
FOXJ3	22887	ucsc.edu;bcgsc.ca	37	1	42657316	42657316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FOXJ3	NM_001198851	exon11	c.A1009T	p.T337S	.	.	153	52	226	2	.	228
FRK	2444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116277657	116277657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRK	NM_002031	exon5	c.A916T	p.T306S	.	.	31	12	63	0	.	948
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48529665	48529665	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRYL	NM_015030	exon53	c.A7146G	p.V2382V	.	.	50	27	41	0	.	69
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44975744	44975744	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FSCB	NM_032135	exon1	c.A447G	p.E149E	.	.	167	107	146	0	.	587
GALK1	2584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73760089	73760089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GALK1	NM_000154	exon2	c.G244T	p.A82S	.	.	57	17	69	0	.	90
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42088201	42088201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLI3	NM_000168	exon5	c.T568A	p.F190I	.	.	167	55	240	0	.	1149
GLT8D2	83468	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104396987	104396987	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLT8D2	NM_031302	exon5	c.T210A	p.N70K	.	.	151	89	115	1	.	92
GLUL	2752	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182353642	182353642	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLUL	NM_001033056	exon7	c.T1020C	p.R340R	.	.	200	41	136	0	.	90
GPR144	347088	broad.mit.edu	37	9	127216839	127216839	+	Silent	SNP	C	C	T	rs117456728	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001161808	exon6	c.C1155T	p.N385N	.	.	58	4	52	1	C|0.944;T|0.056	.
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25701321	25701321	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR158	NM_020752	exon4	c.T1254G	p.L418L	.	.	296	82	115	0	.	141
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89971058	89971058	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR98	NM_032119	exon24	c.5111-2A>T	.	.	.	59	23	82	0	.	103
GRAMD1A	57655	bcgsc.ca	37	19	35512427	35512427	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRAMD1A	NM_020895	exon14	c.C1497T	p.Y499Y	.	.	64	30	103	3	.	90
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10032379	10032379	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRIN2A	NM_000833	exon4	c.A444T	p.G148G	.	.	29	18	26	0	.	349
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	43032457	43032457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRXCR1	NM_001080476	exon4	c.T773A	p.M258K	.	.	118	32	75	1	.	23
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156594457	156594457	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HAPLN2	NM_021817	exon6	c.T621A	p.P207P	.	.	30	7	31	0	.	90
HDHD3	81932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116135994	116135994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HDHD3	NM_031219	exon2	c.C641T	p.P214L	.	.	105	64	90	0	.	90
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112685903	112685903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001109662	exon27	c.A3814T	p.M1272L	.	.	80	16	67	0	.	.
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143092423	143092423	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HIVEP2	NM_006734	exon5	c.G3453T	p.L1151L	.	.	91	35	88	0	.	95
HMGXB3	22993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149431544	149431544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HMGXB3	NM_014983	exon20	c.A3668T	p.D1223V	.	.	68	28	88	0	.	24
HPS4	89781	broad.mit.edu	37	22	26853885	26853885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HPS4	NM_022081	exon13	c.C1895A	p.A632D	.	.	30	3	39	0	.	90
HSPA12B	116835	hgsc.bcm.edu	37	20	3732438	3732438	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HSPA12B	NM_052970	exon13	c.G1686A	p.L562L	.	.	5	5	2	0	.	226
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71007743	71007743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HYDIN	NM_001270974	exon34	c.C5218T	p.P1740S	.	.	191	23	162	0	.	92
IFIH1	64135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163124064	163124064	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFIH1	NM_022168	exon15	c.A2823G	p.V941V	.	.	34	15	43	0	.	91
IFNW1	3467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21141360	21141360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFNW1	NM_002177	exon1	c.G210T	p.Q70H	.	.	53	42	82	1	.	90
IL18BP	10068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71712350	71712350	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IL18BP	NM_001145057	exon4	c.A339G	p.R113R	.	.	85	36	108	0	.	90
INTS4L2	644619	broad.mit.edu	37	7	65159983	65159983	+	RNA	SNP	A	A	G	rs2949280	bycluster;byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	108	4	185	1	A|0.750;G|0.250	.
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9462080	9462080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IPO7	NM_006391	exon23	c.2774delA	p.E925fs	.	.	155	48	138	0	.	271
ITGA9	3680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37860441	37860441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITGA9	NM_002207	exon28	c.G3069C	p.E1023D	.	.	163	51	181	2	.	715
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52861120	52861120	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_001166449	exon3	c.T345C	p.A115A	.	.	177	82	157	1	.	46
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52848087	52848087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_002218	exon23	c.G2627T	p.G876V	.	.	99	27	111	0	.	46
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24438936	24438936	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITSN2	NM_006277	exon32	c.T3972C	p.D1324D	.	.	87	16	60	0	.	539
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196197434	196197434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KCNT2	NM_198503	exon28	c.C3328G	p.L1110V	.	.	87	17	60	0	.	159
KIAA1549	57670	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138602195	138602195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIAA1549	NM_020910	exon2	c.C2177A	p.S726Y	.	.	63	24	71	1	.	369
KIF15	56992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44879894	44879894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF15	NM_020242	exon27	c.T3299A	p.I1100N	.	.	150	86	155	0	.	91
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72351437	72351437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF19	NM_153209	exon20	c.T2983C	p.S995P	.	.	53	10	52	0	.	90
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10384901	10384901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF1B	NM_015074	exon24	c.A2485C	p.T829P	.	.	83	35	78	0	.	93
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55593652	55593652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	KIT,fibrous_tissue_and_uncertain_origin,gastrointestinal_stromal_tumour,0	KIT	NM_000222	exon11	c.C1718A	p.P573Q	.	.	138	77	91	0	.	20166
KLRC4	8302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10561527	10561527	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KLRC4	NM_013431	exon2	c.A270T	p.T90T	.	.	317	180	344	0	.	90
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152732782	152732782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KPRP	NM_001025231	exon2	c.T718A	p.Y240N	.	.	146	35	80	0	.	95
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305769	39305769	+	Missense_Mutation	SNP	G	G	C	rs151111061		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KRTAP4-5	NM_033188	exon1	c.C251G	p.T84S	.	.	80	17	100	0	.	90
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G	rs137947981		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KRTAP4-5	NM_033188	exon1	c.G246C	p.Q82H	.	.	76	16	97	0	.	90
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152785001	152785001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LCE1B	NM_178349	exon1	c.C79G	p.P27A	.	.	367	174	245	1	.	68
LDB2	9079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16510279	16510279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LDB2	NM_001290	exon7	c.G770A	p.R257Q	.	.	108	52	97	0	.	90
LEP	3952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127894794	127894794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LEP	NM_000230	exon3	c.T482A	p.L161Q	.	.	25	13	40	0	.	90
LGALS9B	284194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	20358665	20358665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGALS9B	NM_001042685	exon5	c.T491A	p.F164Y	.	.	479	121	679	1	.	23
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71960645	71960645	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGR5	NM_003667	exon11	c.A1023T	p.S341S	.	.	176	91	125	0	.	527
LIG1	3978	bcgsc.ca	37	19	48621036	48621036	+	Silent	SNP	C	C	G	rs13436	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LIG1	NM_000234	exon26	c.G2442C	p.A814A	.	.	134	8	297	4	C|0.532;G|0.468	722
LMOD2	442721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123302237	123302237	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LMOD2	NM_207163	exon2	c.T597A	p.I199I	.	.	85	38	97	0	.	68
LOC100133286	0	broad.mit.edu;bcgsc.ca	37	21	37444696	37444696	+	RNA	SNP	C	C	T	rs2835265	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	50	4	118	0	C|0.875;T|0.125	.
LOC283922	0	broad.mit.edu	37	16	74394671	74394671	+	RNA	SNP	T	T	C	rs62055171	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	139	4	213	1	T|0.500;C|0.500	.
LOC339240	0	broad.mit.edu	37	17	18327860	18327860	+	RNA	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	158	27	176	0	.	.
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113655151	113655151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRIG2	NM_014813	exon14	c.G1849T	p.A617S	.	.	79	17	123	0	.	229
LRRC48	83450	broad.mit.edu;bcgsc.ca	37	17	17910349	17910349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC48	NM_031294	exon12	c.G1214C	p.C405S	.	.	193	40	183	2	.	46
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137322	40137322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC4C	NM_001258419	exon7	c.T521C	p.L174S	.	.	76	18	52	0	.	521
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133595953	133595953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC6	NM_012472	exon11	c.A1214T	p.Q405L	.	.	289	44	95	0	.	92
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101606245	101606246	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRK1	NM_024652	exon32	c.5603_5604del	p.1868_1868del	.	.	70	57	107	0	.	602
LZTS1	11178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20112615	20112615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LZTS1	NM_021020	exon1	c.C78T	p.R26R	.	.	105	27	99	0	.	91
MAATS1	89876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119462964	119462964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_033364	exon14	c.G1823A	p.R608Q	.	.	125	36	120	1	.	.
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	71494849	71494849	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP1B	NM_005909	exon5	c.T5667C	p.Y1889Y	.	.	48	27	54	0	.	155
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4110509	4110509	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP2K2	NM_030662	exon3	c.A448T	p.M150L	.	.	17	8	59	0	.	510
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27684710	27684710	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP3K6	NM_004672	exon21	c.G2877A	p.P959P	.	.	96	43	128	0	.	1523
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86989078	86989078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAPK10	NM_002753	exon10	c.A833T	p.Q278L	.	.	92	67	100	0	.	1402
MC2R	4158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13885429	13885429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MC2R	NM_000529	exon2	c.T89C	p.I30T	.	.	65	23	62	0	.	95
MESDC1	59274	hgsc.bcm.edu	37	15	81295203	81295203	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MESDC1	NM_022566	exon1	c.G591T	p.A197A	.	.	9	7	2	0	.	90
METTL1	4234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58163625	58163625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	METTL1	NM_005371	exon3	c.G389T	p.G130V	.	.	135	77	157	0	.	492
MFSD4	148808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	205553249	205553249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD4	NM_181644	exon4	c.T857A	p.L286Q	.	.	46	12	54	0	.	92
MFSD6	54842	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191301292	191301292	+	Silent	SNP	G	G	A	rs115585862	byfrequency;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD6	NM_017694	exon3	c.G537A	p.L179L	.	.	93	32	86	0	G|0.996;T|0.004	92
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141765270	141765270	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAM	NM_004668	exon38	c.4618+2T>A	.	.	.	64	37	90	0	.	70
MGAT1	4245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180218676	180218676	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAT1	NM_001114617	exon3	c.G1296A	p.A432A	.	.	213	96	282	0	.	91
MIR662	724032	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	819494	819494	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	106	29	164	0	.	.
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118347664	118347664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MLL	NM_001197104	exon4	c.C3301T	p.R1101X	.	.	121	44	151	0	.	1255
MRPL45	84311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36478426	36478426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MRPL45	NM_032351	exon8	c.A869T	p.E290V	.	.	50	11	86	0	.	90
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	813260	813260	+	Missense_Mutation	SNP	C	C	T	rs200684663		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MSLN	NM_005823	exon4	c.C113T	p.A38V	.	.	169	49	228	0	C|0.999;T|0.000	91
MTF1	4520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38287832	38287832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MTF1	NM_005955	exon9	c.A1728C	p.L576F	.	.	163	78	233	0	.	92
MUC4	4585	bcgsc.ca;mdanderson.org	37	3	195510795	195510795	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MUC4	NM_018406	exon2	c.A7656C	p.S2552S	.	.	813	135	773	3	.	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513058	195513058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MUC4	NM_018406	exon2	c.T5393A	p.V1798D	.	.	1859	369	1820	1	.	90
MXD4	10608	broad.mit.edu;mdanderson.org	37	4	2252295	2252295	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MXD4	NM_006454	exon6	c.G606T	p.R202R	.	.	16	8	14	0	.	226
MYCBP2	23077	hgsc.bcm.edu	37	13	77763108	77763108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYCBP2	NM_015057	exon30	c.C4229A	p.S1410Y	.	.	54	4	57	0	.	236
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	16704767	16704767	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYO10	NM_012334	exon22	c.A2197T	p.K733X	.	.	64	16	58	0	.	3
MYSM1	114803	bcgsc.ca	37	1	59147835	59147835	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYSM1	NM_001085487	exon8	c.T881A	p.I294N	.	.	22	4	34	0	.	501
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33092036	33092036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	N4BP2L2	NM_014887	exon6	c.A1655G	p.H552R	.	.	77	43	74	0	.	68
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	35923307	35923307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NBEA	NM_015678	exon37	c.T5966A	p.L1989X	.	.	102	30	130	0	.	144
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50190491	50190491	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCKAP5L	NM_001037806	exon8	c.T1152C	p.G384G	.	.	37	8	43	0	.	68
NCR2	9436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41309647	41309647	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCR2	NM_004828	exon3	c.T510C	p.S170S	.	.	63	50	106	0	.	91
NCS1	23413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132980139	132980139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCS1	NM_014286	exon3	c.A118T	p.S40C	.	.	139	39	123	0	.	90
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152539201	152539201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEB	NM_004543	exon29	c.A2918T	p.K973M	.	.	109	31	77	0	.	145
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	178231110	178231110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon1	c.G3C	p.M1I	.	.	264	15	273	0	.	660
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	178256896	178256896	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon3	c.T333C	p.Y111Y	.	.	91	79	108	0	.	660
NLRP2	55655	broad.mit.edu;bcgsc.ca	37	19	55496458	55496458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NLRP2	NM_017852	exon7	c.T2074A	p.C692S	.	.	51	24	85	2	.	120
NME6	10201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48339972	48339972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NME6	NM_005793	exon2	c.59delA	p.Q20fs	.	.	98	27	109	0	.	115
NOL12	79159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38082401	38082401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOL12	NM_024313	exon1	c.T2A	p.M1K	.	.	50	20	66	0	.	90
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117669901	117669901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOS1	NM_001204218	exon23	c.C3373G	p.P1125A	.	.	158	54	190	0	.	154
NOV	4856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120431542	120431542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOV	NM_002514	exon4	c.T734A	p.M245K	.	.	192	75	100	1	.	228
NUF2	83540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163295880	163295880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUF2	NM_145697	exon2	c.G39C	p.E13D	.	.	93	18	58	0	.	231
NUP153	9972	broad.mit.edu;ucsc.edu	37	6	17637902	17637902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP153	NM_005124	exon16	c.G1946A	p.G649E	.	.	14	5	16	0	.	637
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50412454	50412454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP62	NM_153719	exon3	c.A611G	p.Q204R	.	.	86	38	106	0	.	615
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	1	228447428	228447429	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OBSCN	NM_001271223	exon17	c.5088_5089insA	p.Y1696fs	.	.	200	63	188	0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228563447	228563447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OBSCN	NM_001271223	exon109	c.G25579A	p.A8527T	.	.	171	41	184	0	.	403
OCA2	4948	bcgsc.ca	37	15	28096538	28096538	+	Silent	SNP	A	A	G	rs1800419	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OCA2	NM_000275	exon22	c.T2328C	p.A776A	.	.	120	6	199	2	A|0.509;G|0.491	135
OGG1	4968	bcgsc.ca	37	3	9798773	9798773	+	Missense_Mutation	SNP	C	C	G	rs1052133	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OGG1	NM_016820	exon7	c.C994G	p.P332A	.	.	130	5	144	0	C|0.755;G|0.245	660
OR11H4	390442	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20711071	20711071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR11H4	NM_001004479	exon1	c.T121C	p.F41L	.	.	174	54	150	1	.	69
OR4D9	390199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59283045	59283045	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR4D9	NM_001004711	exon1	c.C660A	p.V220V	.	.	78	36	94	0	.	68
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661967	4661967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR51D1	NM_001004751	exon1	c.T947A	p.L316H	.	.	100	25	67	0	.	68
OR5R1	219479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56185421	56185421	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR5R1	NM_001004744	exon1	c.T288A	p.A96A	.	.	93	46	111	2	.	70
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	55926911	55926911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR8K5	NM_001004058	exon1	c.G883T	p.E295X	.	.	39	13	81	0	.	72
P4HA1	5033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	74803644	74803660	+	Frame_Shift_Del	DEL	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HA1	NM_001142596	exon9	c.1133_1148del	p.378_383del	.	.	24	13	76	0	.	69
P4HTM	54681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49042389	49042389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HTM	NM_177938	exon6	c.A983T	p.H328L	.	.	102	58	110	0	.	205
PAN3	255967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28748529	28748529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PAN3	NM_175854	exon2	c.A551T	p.Q184L	.	.	29	20	33	0	.	69
PAX1	5075	broad.mit.edu	37	20	21690039	21690039	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PAX1	NM_006192	exon4	c.G1239A	p.G413G	.	.	5	3	21	0	.	227
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140308516	140308516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHAC1	NM_031882	exon1	c.A2039T	p.Q680L	.	.	52	24	79	0	.	28
PCDHB2	56133	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140475814	140475814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHB2	NM_018936	exon1	c.A1440T	p.R480S	.	.	164	58	249	0	.	96
PCLO	27445	broad.mit.edu	37	7	82583094	82583094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCLO	NM_014510	exon5	c.C7175A	p.P2392Q	.	.	52	18	54	2	.	29
PCNXL2	80003	broad.mit.edu	37	1	233334740	233334740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCNXL2	NM_014801	exon15	c.C3011G	p.A1004G	.	.	324	10	269	1	.	91
PCOLCE2	26577	broad.mit.edu;ucsc.edu	37	3	142542413	142542413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCOLCE2	NM_013363	exon7	c.A910G	p.T304A	.	.	99	20	112	2	.	93
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144854658	144854658	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PDE4DIP	NM_001198834	exon43	c.6814-2A>T	.	.	.	145	9	126	0	.	663
PDLIM5	10611	broad.mit.edu;bcgsc.ca	37	4	95539278	95539278	+	Silent	SNP	C	C	T	rs116830271	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PDLIM5	NM_001256426	exon12	c.C1131T	p.A377A	.	.	130	6	128	2	C|0.997;T|0.003	117
PILRA	29992	ucsc.edu;bcgsc.ca	37	7	99987596	99987596	+	Silent	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PILRA	NM_013439	exon3	c.C540G	p.V180V	.	.	147	51	261	2	.	91
PITX1	5307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134364795	134364795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PITX1	NM_002653	exon3	c.C619G	p.P207A	.	.	122	46	193	0	.	227
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20474788	20474788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLA2G2F	NM_022819	exon5	c.T530A	p.L177H	.	.	193	81	310	1	.	91
PLEKHD1	400224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69994595	69994595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLEKHD1	NM_001161498	exon12	c.C1297T	p.R433C	.	.	147	32	165	0	.	68
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65209799	65209799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLEKHG3	NM_015549	exon15	c.A2870T	p.Q957L	.	.	73	22	92	0	.	91
PLXNB1	5364	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48457128	48457128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLXNB1	NM_001130082	exon19	c.A3658T	p.S1220C	.	.	104	30	125	1	.	293
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56227157	56227157	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PMEPA1	NM_020182	exon4	c.A816T	p.A272A	.	.	37	12	27	0	.	227
POTEG	404785	bcgsc.ca	37	14	19553550	19553550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	POTEG	NM_001005356	exon1	c.C134T	p.T45I	.	.	1274	109	1332	2	.	1
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3328344	3328344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRDM16	NM_022114	exon9	c.T1583A	p.L528Q	.	.	27	10	50	0	.	660
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228003457	228003457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRSS38	NM_183062	exon1	c.T40A	p.S14T	.	.	129	43	131	0	.	92
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189340	139189340	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSD2	NM_032289	exon2	c.A315T	p.A105A	.	.	59	32	90	0	.	91
PSMB9	5698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32826201	32826201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSMB9	NM_002800	exon5	c.A451T	p.S151C	.	.	75	31	94	0	.	90
PTCH2	8643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45307528	45307528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PTCH2	NM_001166292	exon2	c.T256A	p.W86R	.	.	140	56	228	1	.	851
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89712017	89712017	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon6	c.634+1G>T	.	.	.	16	12	39	0	.	17735
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144899155	144899155	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_078480	exon11	c.C1305T	p.S435S	.	.	128	10	111	0	.	.
PVRL2	5819	bcgsc.ca	37	19	45375326	45375326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PVRL2	NM_002856	exon3	c.A695G	p.D232G	.	.	92	31	141	3	.	90
PZP	5858	broad.mit.edu;bcgsc.ca	37	12	9346836	9346836	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PZP	NM_002864	exon12	c.1093-2A>T	.	.	.	76	47	96	3	.	157
RAB3D	9545	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11447930	11447930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAB3D	NM_004283	exon2	c.C146T	p.P49L	.	.	71	53	259	2	.	653
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20585826	20585826	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RALGAPA2	NM_020343	exon15	c.A2031T	p.R677R	.	.	97	23	99	0	.	24
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134525525	134525525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAPGEF1	NM_198679	exon3	c.A309C	p.Q103H	.	.	89	67	95	0	.	849
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198508920	198508920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RFTN2	NM_144629	exon3	c.G400A	p.A134T	.	.	130	73	104	0	.	90
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30616020	30616020	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RHBDL3	NM_138328	exon4	c.A504T	p.T168T	.	.	180	106	246	0	.	91
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145688137	145688137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RNF115	NM_014455	exon9	c.A832T	p.T278S	.	.	242	61	166	0	.	91
ROBO1	6091	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78717373	78717373	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ROBO1	NM_002941	exon13	c.A1710T	p.T570T	.	.	116	34	112	1	.	67
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134994077	134994077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAGE1	NM_018666	exon18	c.A2486T	p.Y829F	.	.	37	31	55	0	.	133
SAMD14	201191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48191392	48191392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAMD14	NM_174920	exon10	c.G1078A	p.G360S	.	.	139	41	168	1	.	68
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38951586	38951586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCN11A	NM_014139	exon8	c.1072delC	p.Q358fs	.	.	94	23	60	0	.	99
SCNN1D	6339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1223365	1223365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCNN1D	NM_001130413	exon12	c.G1610T	p.G537V	.	.	105	52	150	0	.	90
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4188918	4188918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon30	c.T4448A	p.L1483H	.	.	54	16	75	0	.	138
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4201422	4201422	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon32	c.A4734T	p.P1578P	.	.	90	39	134	0	.	138
SEPT2	4735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	242283230	242283230	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SEPT2	NM_001008491	exon10	c.A760T	p.R254X	.	.	162	44	123	0	.	68
SERBP1	26135	broad.mit.edu	37	1	67895787	67895787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SERBP1	NM_001018067	exon1	c.C197A	p.A66E	.	.	29	3	34	0	.	91
SIAH1	6477	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48395767	48395767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SIAH1	NM_001006610	exon2	c.A666T	p.L222F	.	.	73	59	131	2	.	415
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1053526	1053526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC12A7	NM_006598	exon23	c.A3098G	p.D1033G	.	.	211	36	164	0	.	138
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19786418	19786418	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A2	NM_001193288	exon1	c.A447T	p.L149F	.	.	33	27	31	0	.	517
SLC24A5	283652	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	48427084	48427084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A5	NM_205850	exon5	c.T493A	p.S165T	.	.	62	51	69	0	.	90
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150663626	150663626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC36A3	NM_001145017	exon9	c.C1076A	p.T359N	.	.	111	49	145	0	.	93
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18282139	18282139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A12	NM_001145195	exon9	c.G1452A	p.V484V	.	.	303	43	141	1	.	154
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145640635	145640635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A4	NM_130849	exon3	c.A643T	p.S215C	.	.	273	34	161	0	.	90
SLC52A1	55065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4936947	4936947	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_017986	exon3	c.T837A	p.G279G	.	.	84	72	108	0	.	.
SLC8A1	6546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	40655701	40655701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC8A1	NM_001252624	exon1	c.T1720C	p.Y574H	.	.	100	57	109	1	.	93
SMCR7L	54471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39909580	39909580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SMCR7L	NM_019008	exon6	c.G644T	p.W215L	.	.	72	29	112	0	.	90
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53723037	53723037	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_152860	exon2	c.T189A	p.A63A	.	.	63	24	67	0	.	.
SPATA31C1	441452	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	90535600	90535600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001145124	exon4	c.G778C	p.D260H	.	.	191	50	167	0	.	.
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149529876	149529876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_198455	exon109	c.A15290T	p.Q5097L	.	.	40	17	86	0	.	.
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108999919	108999919	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SULT1C4	NM_006588	exon5	c.A568T	p.K190X	.	.	93	55	82	0	.	22
SYNPR	132204	broad.mit.edu	37	3	63429123	63429123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_144642	exon1	c.T2C	p.M1T	.	.	106	3	92	0	.	.
TAF2	6873	broad.mit.edu	37	8	120814206	120814206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TAF2	NM_003184	exon6	c.C620A	p.T207K	.	.	102	3	84	0	.	274
TBR1	10716	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	162279937	162279937	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBR1	NM_006593	exon6	c.C1248A	p.R416R	.	.	98	33	189	1	.	91
TBX20	57057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35293206	35293206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBX20	NM_001077653	exon1	c.C26A	p.P9H	.	.	29	12	46	0	.	90
TCEB3C	162699	bcgsc.ca	37	18	44555147	44555147	+	Missense_Mutation	SNP	T	T	G	rs139717358	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TCEB3C	NM_145653	exon1	c.A1067C	p.E356A	.	.	75	4	95	1	T|0.924;G|0.076	68
TCF7	6932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133480499	133480499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TCF7	NM_201634	exon9	c.C742T	p.P248S	.	.	107	38	218	0	.	90
TDRD5	163589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179562787	179562787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TDRD5	NM_173533	exon3	c.T425A	p.L142Q	.	.	336	82	212	1	.	94
TEX35	84066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178490806	178490806	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001170723	exon9	c.587-1G>T	.	.	.	189	38	149	0	.	.
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155569180	155569180	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TIAM2	NM_012454	exon19	c.C3699T	p.P1233P	.	.	83	69	125	0	.	93
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82333727	82333727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TLE4	NM_007005	exon15	c.T1431A	p.H477Q	.	.	156	36	168	0	.	524
TMEFF2	23671	bcgsc.ca	37	2	193059223	193059223	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TMEFF2	NM_016192	exon1	c.T28A	p.C10S	.	.	142	56	129	1	.	524
TMEM14B	81853	broad.mit.edu	37	6	10751412	10751412	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TMEM14B	NM_030969	exon4	c.C147T	p.A49A	.	.	81	3	129	0	.	90
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	111853343	111853343	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_032012	exon5	c.A1009T	p.R337X	.	.	90	57	66	0	.	.
TMTC3	160418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88548085	88548085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TMTC3	NM_181783	exon4	c.A429T	p.R143S	.	.	26	5	40	0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon5	c.G469T	p.V157F	.	.	82	61	199	2	.	70225
TREH	11181	bcgsc.ca	37	11	118529703	118529703	+	Missense_Mutation	SNP	G	G	A	rs2276064	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TREH	.	.	.	.	.	.	151	6	213	0	G|0.853;A|0.147	46
TRIT1	54802	bcgsc.ca	37	1	40349131	40349131	+	Silent	SNP	G	G	A	rs3845570	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRIT1	NM_017646	exon1	c.C33T	p.P11P	.	.	92	5	148	1	G|0.540;A|0.459	91
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20102931	20102931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRMT2A	NM_001257994	exon4	c.G748A	p.G250R	.	.	58	21	75	0	.	153
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116599393	116599393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRPS1	NM_014112	exon5	c.T2535G	p.N845K	.	.	117	19	51	0	.	229
TSNAX-DISC1	0	ucsc.edu	37	1	231837848	231837848	+	RNA	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	21	9	17	0	.	.
UBE2F-SCLY	0	mdanderson.org	37	2	238969907	238969907	+	RNA	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	33	16	36	0	.	.
UGT2B11	10720	ucsc.edu	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UGT2B11	NM_001073	exon6	c.G1340T	p.R447I	.	.	48	13	50	2	.	93
UGT2B11	10720	ucsc.edu;bcgsc.ca	37	4	70066376	70066376	+	Missense_Mutation	SNP	C	C	G	rs144149579	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UGT2B11	NM_001073	exon6	c.G1372C	p.D458H	.	.	72	19	72	4	C|0.932;G|0.068	93
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54306838	54306838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC13C	NM_001080534	exon1	c.T1738A	p.S580T	.	.	35	28	44	0	.	51
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35542098	35542098	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC5D	NM_080872	exon6	c.752-2A>T	.	.	.	85	16	109	0	.	96
URB1	9875	broad.mit.edu;ucsc.edu	37	21	33688865	33688865	+	Silent	SNP	A	A	G	rs7279896	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_014825	exon38	c.T6546C	p.A2182A	.	.	38	4	73	0	A|0.758;G|0.242	.
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216420052	216420052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USH2A	NM_007123	exon13	c.A2684T	p.Q895L	.	.	238	62	184	1	.	115
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95927304	95927304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USP44	NM_032147	exon2	c.T729A	p.D243E	.	.	72	19	63	0	.	658
USPL1	10208	hgsc.bcm.edu	37	13	31232186	31232186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USPL1	NM_005800	exon9	c.G1972T	p.V658F	.	.	72	4	45	0	.	524
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	82834673	82834673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	VCAN	NM_004385	exon8	c.G5851A	p.E1951K	.	.	56	14	66	0	.	238
VWA5B2	90113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183957516	183957516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_138345	exon15	c.T2432A	p.L811Q	.	.	99	24	105	1	.	.
WASL	8976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123332584	123332584	+	Silent	SNP	C	C	T	rs138588268	byfrequency;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WASL	NM_003941	exon9	c.G1164A	p.P388P	.	.	26	10	40	0	C|0.999;A|0.001	90
WDR60	55112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158672638	158672638	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WDR60	NM_018051	exon5	c.A837G	p.K279K	.	.	189	72	213	0	.	92
WHSC1L1	54904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	38133854	38133854	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WHSC1L1	NM_023034	exon23	c.A4032C	p.A1344A	.	.	321	80	248	1	.	658
XDH	7498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31571159	31571159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	XDH	NM_000379	exon28	c.A3122T	p.Q1041L	.	.	188	121	212	2	.	158
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	166960387	166960387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZBBX	NM_001199201	exon21	c.G2299A	p.D767N	.	.	48	16	29	0	.	92
ZNF286A	57335	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	15619693	15619693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF286A	NM_020652	exon6	c.A655T	p.T219S	.	.	96	49	86	1	.	90
ZNF470	388566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57088220	57088220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF470	NM_001001668	exon6	c.T423G	p.C141W	.	.	63	25	76	2	.	92
ZNF525	170958	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53885102	53885102	+	RNA	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	.	.	33	8	32	0	.	.
ZNF579	163033	bcgsc.ca	37	19	56089353	56089353	+	Silent	SNP	C	C	T	rs2292812	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF579	NM_152600	exon2	c.G1653A	p.K551K	.	.	47	4	66	0	C|0.563;T|0.437	90
ZNF581	51545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56156253	56156253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF581	NM_016535	exon2	c.A316T	p.S106C	.	.	170	85	229	0	.	44
ZNF629	23361	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	30793273	30793273	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001080417	exon3	c.G2376A	p.Q792Q	.	.	23	9	30	1	.	.
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175003	57175003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF835	NM_001005850	exon2	c.T1564A	p.C522S	.	.	143	56	188	0	.	72
ZNF841	284371	broad.mit.edu;ucsc.edu	37	19	52570324	52570324	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001136499	exon7	c.A811T	p.R271X	.	.	88	36	128	1	.	.
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23543010	23543010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF91	NM_003430	exon4	c.A2771T	p.H924L	.	.	28	9	22	0	.	90
OTOP1	133060	bcgsc.ca	37	4	4228424	4228425	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	p.K56R	.	.	.	.	.	.	.	
