Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94496008	94496008	+	Missense_Mutation	SNP	C	C	T	rs61750142		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ABCA4	NM_000350	exon29	c.G4328A	p.R1443H	.	.	36	5	66	1	.	162
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175898867	175898867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.C2191A	p.Q731K	.	.	58	50	143	0	.	729
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175898869	175898869	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.G2193A	p.Q731Q	.	.	58	50	142	1	.	729
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43860553	43860553	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAMTS20	NM_025003	exon9	c.A1269G	p.K423K	.	.	54	17	79	0	.	795
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7709399	7709399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADCY2	NM_020546	exon10	c.C1477T	p.R493C	.	.	85	29	94	0	.	97
AGER	177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32149151	32149151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AGER	NM_172197	exon9	c.G940A	p.A314T	.	.	57	21	55	0	.	226
AQP11	282679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77301269	77301269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AQP11	NM_173039	exon1	c.A232T	p.T78S	.	.	46	19	51	0	.	90
ARAP1	116985	broad.mit.edu	37	11	72410082	72410082	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ARAP1	NM_001040118	exon18	c.C2509T	p.Q837X	.	.	104	7	139	0	.	91
ARHGAP23	57636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36619596	36619596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ARHGAP23	NM_001199417	exon6	c.G456A	p.M152I	.	.	33	5	75	0	.	205
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96799781	96799781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ASTL	NM_001002036	exon4	c.T260G	p.L87R	.	.	36	13	67	0	.	90
BAG5	9529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104026264	104026264	+	Missense_Mutation	SNP	T	T	C	rs143892215	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BAG5	NM_001015049	exon2	c.A1361G	p.D454G	.	.	98	44	121	0	T|1.000;A|0.000	229
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25002861	25002861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BCAT1	NM_001178093	exon6	c.C569A	p.P190H	.	.	79	36	102	0	.	522
BMS1	9790	ucsc.edu	37	10	43279934	43279934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BMS1	NM_014753	exon2	c.T92C	p.L31P	.	.	36	4	29	0	.	93
BPNT1	10380	ucsc.edu	37	1	220231254	220231254	+	RNA	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BPNT1	.	.	.	.	.	.	178	2	184	1	.	91
BSG	682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	579633	579633	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BSG	NM_001728	exon3	c.G549A	p.L183L	.	.	25	9	46	0	.	90
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93720042	93720042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BTBD7	NM_001002860	exon7	c.G1703A	p.G568D	.	.	62	20	61	0	.	91
BUD13	84811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116628662	116628662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BUD13	NM_032725	exon8	c.G1504A	p.A502T	.	.	35	13	42	0	.	154
C11orf34	349633	broad.mit.edu	37	11	112123130	112123130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C11orf34	NM_001145024	exon3	c.C389T	p.A130V	.	.	35	4	36	0	.	68
C11orf68	83638	ucsc.edu	37	11	65685077	65685077	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C11orf68	NM_001135635	exon2	c.C735T	p.Y245Y	.	.	39	4	58	0	.	68
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3739248	3739248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C20orf27	NM_001039140	exon3	c.G172T	p.D58Y	.	.	23	18	46	0	.	90
C8orf46	254778	ucsc.edu	37	8	67428216	67428216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C8orf46	NM_152765	exon6	c.T529C	p.C177R	.	.	38	4	38	0	.	92
CACNA1B	774	ucsc.edu	37	9	141016281	141016281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNA1B	NM_000718	exon46	c.G6850A	p.V2284M	.	.	40	4	79	0	.	138
CACNA2D1	781	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	81964563	81964563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNA2D1	NM_000722	exon3	c.A182T	p.Y61F	.	.	69	29	84	2	.	96
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37347830	37347830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNB1	NM_199248	exon3	c.A188G	p.Y63C	.	.	46	12	64	0	.	154
CALD1	800	broad.mit.edu;bcgsc.ca	37	7	134642970	134642970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALD1	NM_033138	exon11	c.1990delA	p.K664fs	.	.	70	8	103	0	.	226
CALR	811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13054713	13054713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALR	NM_004343	exon9	c.A1240G	p.K414E	.	.	109	37	181	0	.	91
CAMK2A	815	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149602698	149602698	+	Silent	SNP	G	G	A	rs200745191		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CAMK2A	NM_015981	exon18	c.C1320T	p.I440I	.	.	30	10	50	0	G|0.999;A|0.001	333
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734194	48734194	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CARD8	NM_001184900	exon6	c.G612A	p.E204E	.	.	98	68	135	0	.	227
CATSPERB	79820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92058310	92058310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CATSPERB	NM_024764	exon23	c.A2746G	p.T916A	.	.	88	34	118	2	.	138
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102433674	102433674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_016053	exon5	c.A407G	p.Y136C	.	.	64	36	67	0	.	.
CCDC93	54520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118703151	118703151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCDC93	NM_019044	exon17	c.C1304T	p.S435F	.	.	27	9	36	0	.	154
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2499459	2499459	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCNF	NM_001761	exon12	c.G1395T	p.G465G	.	.	13	6	14	0	.	658
CCSER2	54462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	86131217	86131217	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_018999	exon2	c.G409T	p.E137X	.	.	163	72	173	0	.	.
CCT5	22948	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10258415	10258415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCT5	NM_012073	exon5	c.A723C	p.K241N	.	.	121	20	147	1	.	92
CCT6P1	643253	broad.mit.edu;ucsc.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	23	5	36	0	.	.
CD68	968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7483022	7483022	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CD68	NM_001040059	exon1	c.G27C	p.G9G	.	.	22	12	55	0	.	90
CDH22	64405	ucsc.edu	37	20	44806644	44806644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CDH22	NM_021248	exon11	c.C1856T	p.A619V	.	.	38	4	54	1	.	95
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63511191	63511191	+	Silent	SNP	T	T	A	rs139333396	byfrequency;alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CDH7	NM_004361	exon7	c.T1125A	p.P375P	.	.	137	48	183	0	T|0.999;C|0.001	94
CHD9	80205	ucsc.edu	37	16	53319582	53319582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CHD9	NM_025134	exon25	c.A5042T	p.K1681M	.	.	26	4	111	0	.	272
CHPF2	54480	ucsc.edu	37	7	150934954	150934954	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CHPF2	NM_019015	exon4	c.A1506G	p.A502A	.	.	38	5	49	0	.	91
CHPT1	56994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102108302	102108302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CHPT1	NM_020244	exon3	c.T442G	p.S148A	.	.	28	10	38	0	.	90
CLCA1	1179	broad.mit.edu;bcgsc.ca	37	1	86939514	86939514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CLCA1	NM_001285	exon3	c.C406A	p.P136T	.	.	131	12	187	0	.	91
CLPP	8192	ucsc.edu	37	19	6364566	6364566	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CLPP	NM_006012	exon4	c.G471A	p.L157L	.	.	29	4	63	0	.	91
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46083887	46083887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	COG3	NM_031431	exon15	c.G1655T	p.G552V	.	.	83	30	200	0	.	154
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113418769	113418769	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSMD3	NM_198123	exon35	c.C5793A	p.S1931S	.	.	222	85	170	0	.	1132
CSN1S1	1446	ucsc.edu	37	4	70798314	70798314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001890	exon2	c.T41C	p.L14P	.	.	45	4	62	1	.	.
CSTF2T	23283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	53458521	53458521	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSTF2T	NM_015235	exon1	c.A789T	p.P263P	.	.	48	23	49	0	.	91
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99270218	99270218	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CYP3A5	NM_001190484	exon4	c.C303A	p.V101V	.	.	131	48	149	0	.	90
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155412382	155412382	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DCHS2	NM_001142552	exon1	c.G126A	p.R42R	.	.	63	14	86	0	.	94
DEPDC4	120863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	100660786	100660786	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DEPDC4	NM_152317	exon1	c.T69A	p.L23L	.	.	60	21	77	0	.	90
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13917343	13917343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH5	NM_001369	exon8	c.G998A	p.R333Q	.	.	63	26	64	0	.	182
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38858481	38858481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH8	NM_001206927	exon58	c.T8527C	p.C2843R	.	.	62	30	87	0	.	615
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47005262	47005262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAJA2	NM_005880	exon3	c.A361C	p.K121Q	.	.	225	158	99	0	.	226
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225688292	225688292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DOCK10	NM_014689	exon28	c.C3109A	p.H1037N	.	.	89	44	91	0	.	92
DUSP9	1852	mdanderson.org	37	X	152913409	152913409	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DUSP9	NM_001395	exon2	c.T2A	p.M1K	.	.	13	3	12	0	.	660
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYNC2H1	NM_001377	exon19	c.G2758A	p.D920N	.	.	46	14	61	0	.	68
DYRK4	8798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4722680	4722680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYRK4	NM_003845	exon13	c.G1324A	p.D442N	.	.	174	60	228	1	.	360
EBNA1BP2	10969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43637963	43637963	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EBNA1BP2	NM_001159936	exon1	c.T130C	p.L44L	.	.	49	13	93	0	.	90
EFHD2	79180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15753664	15753664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EFHD2	NM_024329	exon3	c.A475G	p.K159E	.	.	67	30	131	0	.	90
EMP2	2013	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	10631874	10631874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EMP2	NM_001424	exon4	c.G227T	p.C76F	.	.	65	25	81	1	.	90
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29259514	29259514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM179A	NM_199280	exon18	c.C2526A	p.H842Q	.	.	90	36	98	0	.	26
FAM186B	84070	ucsc.edu	37	12	49982248	49982248	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM186B	NM_032130	exon6	c.G2523A	p.L841L	.	.	40	4	46	0	.	91
FAM220A	84792	hgsc.bcm.edu;bcgsc.ca	37	7	6370320	6370355	+	In_Frame_Del	DEL	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001037163	exon2	c.431_466del	p.144_156del	.	.	50	5	105	0	.	.
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	139612124	139612124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM69B	NM_152421	exon2	c.C159A	p.Y53X	.	.	27	15	28	0	.	90
FBXL18	80028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5541166	5541166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FBXL18	NM_024963	exon3	c.A734T	p.E245V	.	.	70	33	87	0	.	651
FCRL4	83417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157548283	157548283	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FCRL4	NM_031282	exon10	c.G1410C	p.Q470H	.	.	88	30	108	3	.	229
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14816776	14816776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FREM1	NM_144966	exon16	c.G2640T	p.E880D	.	.	40	25	63	0	.	138
FRG1B	284802	bcgsc.ca	37	20	29623214	29623214	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FRG1B	.	.	.	.	.	.	244	22	338	9	.	22
GFI1B	8328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135862139	135862139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GFI1B	NM_001135031	exon2	c.C74T	p.P25L	.	.	34	17	64	0	.	154
GIMAP1-GIMAP5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150416151	150416151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001199577	exon2	c.A16C	p.M6L	.	.	49	22	73	0	.	.
GNE	10020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36246477	36246477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GNE	NM_001128227	exon3	c.A260G	p.N87S	.	.	33	22	47	0	.	115
GPR119	139760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129518890	129518890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR119	NM_178471	exon1	c.A532T	p.M178L	.	.	38	32	54	0	.	132
GPR137B	7107	broad.mit.edu	37	1	236371400	236371400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR137B	NM_003272	exon7	c.C1142T	p.A381V	.	.	81	6	73	0	.	90
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154146446	154146446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR149	NM_001038705	exon1	c.T959A	p.V320D	.	.	114	47	189	0	.	96
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895442	42895442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GRXCR1	NM_001080476	exon1	c.T159A	p.D53E	.	.	89	47	119	0	.	23
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72663972	72663972	+	RNA	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	141	50	191	0	.	.
GTF3C3	9330	bcgsc.ca	37	2	197657782	197657782	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GTF3C3	NM_001206774	exon3	c.G309A	p.E103E	.	.	260	10	281	5	.	97
HPX	3263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6453022	6453022	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HPX	NM_000613	exon9	c.A978G	p.V326V	.	.	42	20	45	0	.	90
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154862937	154862937	+	Missense_Mutation	SNP	G	G	T	rs141719500	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HTR5A	NM_024012	exon1	c.G328T	p.G110C	.	.	14	6	26	0	G|1.000;C|0.000	155
IGSF3	3321	ucsc.edu	37	1	117146494	117146494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IGSF3	NM_001542	exon7	c.A1436T	p.N479I	.	.	34	4	58	1	.	92
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67833704	67833704	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IL12RB2	NM_001559	exon10	c.T1455C	p.I485I	.	.	47	6	53	0	.	92
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57892756	57892756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IMPAD1	NM_017813	exon2	c.A388G	p.I130V	.	.	66	38	96	0	.	91
IRF4	3662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	393203	393203	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IRF4	NM_001195286	exon2	c.G51A	p.V17V	.	.	123	51	134	0	.	659
IRS1	3667	ucsc.edu	37	2	227662684	227662684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IRS1	NM_005544	exon1	c.G771C	p.M257I	.	.	39	4	60	0	.	1272
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68657110	68657110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ITGA11	NM_001004439	exon4	c.G292A	p.E98K	.	.	123	28	118	0	.	538
ITGB7	3695	ucsc.edu	37	12	53585693	53585693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ITGB7	NM_000889	exon15	c.C2266T	p.R756W	.	.	38	4	53	0	.	231
KCNA5	3741	ucsc.edu	37	12	5153761	5153761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNA5	NM_002234	exon1	c.G448A	p.A150T	.	.	43	4	72	0	.	715
KCNC3	3748	broad.mit.edu	37	19	50831989	50831989	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNC3	NM_004977	exon1	c.G351A	p.L117L	.	.	8	4	42	0	.	91
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88707142	88707142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNK10	NM_138318	exon3	c.C425T	p.A142V	.	.	29	12	49	0	.	95
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	138676396	138676396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNT1	NM_020822	exon26	c.T2959A	p.Y987N	.	.	62	24	114	0	.	137
KCNU1	157855	ucsc.edu	37	8	36768536	36768536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNU1	NM_001031836	exon22	c.C2420T	p.S807L	.	.	46	4	97	0	.	23
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6986628	6986628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDM4C	NM_001146696	exon11	c.G1705C	p.V569L	.	.	61	11	100	0	.	228
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55964415	55964415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDR	NM_002253	exon17	c.G2398C	p.G800R	.	.	83	21	139	0	.	2298
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5462512	5462512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KIAA0947	NM_015325	exon13	c.G3065C	p.G1022A	.	.	67	15	102	0	.	48
KRT19P2	160313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95228734	95228734	+	RNA	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	16	10	21	0	.	.
KRT31	3881	ucsc.edu	37	17	39550286	39550286	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KRT31	NM_002277	exon7	c.C1233T	p.C411C	.	.	40	4	37	0	.	90
KRTAP4-3	85290	ucsc.edu;bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	109	26	66	0	A|0.046;T|0.954	22
LGI2	55203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25005095	25005095	+	Missense_Mutation	SNP	A	A	G	rs150163590		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	LGI2	NM_018176	exon8	c.T1616C	p.I539T	.	.	105	43	147	0	A|1.000;G|0.000	90
LSP1P3	729862	ucsc.edu;bcgsc.ca	37	5	28927004	28927004	+	RNA	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	35	12	35	0	.	.
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117944848	117944848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAN1A2	NM_006699	exon2	c.C343T	p.H115Y	.	.	122	27	186	0	.	90
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210588377	210588377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP2	NM_001039538	exon12	c.A1235T	p.K412M	.	.	167	74	234	0	.	591
MAP3K14	9020	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43366633	43366633	+	RNA	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP3K14	.	.	.	.	.	.	135	77	115	0	.	1453
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136704840	136704840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP7	NM_001198609	exon6	c.A672T	p.S224S	.	.	46	35	84	0	.	90
MAPK7	5598	bcgsc.ca;mdanderson.org	37	17	19285377	19285377	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAPK7	NM_002749	exon5	c.G1761T	p.P587P	.	.	68	53	116	2	.	1402
MEX3C	51320	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702884	48702884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MEX3C	NM_016626	exon2	c.A1817C	p.H606P	.	.	128	42	200	1	.	659
MFSD1	64747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158525238	158525238	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MFSD1	NM_022736	exon5	c.A573C	p.G191G	.	.	71	29	116	0	.	90
MGC45800	0	ucsc.edu	37	4	183064287	183064287	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	45	4	134	2	.	.
MIR122	406906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56118316	56118316	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	51	21	48	0	.	.
MIR490	574443	ucsc.edu;mdanderson.org	37	7	136587968	136587968	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	.	.	.	57	25	99	0	.	.
MN1	4330	broad.mit.edu;mdanderson.org	37	22	28196151	28196151	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MN1	NM_002430	exon1	c.C381T	p.C127C	.	.	15	6	15	0	.	993
MOSPD3	64598	ucsc.edu	37	7	100211260	100211260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MOSPD3	NM_001040098	exon4	c.C442T	p.P148S	.	.	33	4	50	0	.	92
MOV10	4343	ucsc.edu	37	1	113235448	113235448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MOV10	NM_020963	exon7	c.T1037C	p.L346P	.	.	30	4	68	0	.	95
MRPL13	28998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	121444294	121444294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MRPL13	NM_014078	exon3	c.A221G	p.Q74R	.	.	207	21	138	0	.	226
MSGN1	343930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17998144	17998144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MSGN1	NM_001105569	exon1	c.G359A	p.R120K	.	.	148	51	217	2	.	69
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9059979	9059979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon3	c.C27467A	p.S9156Y	.	.	66	19	95	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9084032	9084032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon1	c.A7783T	p.S2595C	.	.	96	23	128	0	.	566
MYPOP	339344	broad.mit.edu;bcgsc.ca	37	19	46404577	46404577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MYPOP	NM_001012643	exon2	c.A455T	p.Q152L	.	.	27	9	45	0	.	90
NEIL2	252969	ucsc.edu	37	8	11640853	11640853	+	Silent	SNP	C	C	T	rs112549959	byfrequency	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NEIL2	NM_001135746	exon4	c.C633T	p.G211G	.	.	44	4	92	0	C|0.996;T|0.004	659
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54686660	54686660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NFE2	NM_001261461	exon4	c.C620T	p.P207L	.	.	103	26	151	0	.	226
NLRC3	197358	ucsc.edu	37	16	3613857	3613857	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NLRC3	NM_178844	exon5	c.T1081A	p.C361S	.	.	26	4	61	0	.	96
NLRC5	84166	ucsc.edu	37	16	57080538	57080538	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NLRC5	NM_032206	exon21	c.T3323A	p.I1108N	.	.	35	4	87	0	.	159
NMBR	4829	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	142409548	142409548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NMBR	NM_002511	exon1	c.C248A	p.S83Y	.	.	36	29	74	2	.	946
NOVA2	4858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46457041	46457041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NOVA2	NM_002516	exon3	c.G393T	p.K131N	.	.	67	25	140	0	.	226
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	34269611	34269611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NPAS3	NM_001164749	exon12	c.G2098T	p.G700W	.	.	74	16	92	0	.	93
NWD1	284434	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	16890277	16890277	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NWD1	NM_001007525	exon12	c.2731+1G>C	.	.	.	11	4	21	0	.	7
OLFML1	283298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7530924	7530924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OLFML1	NM_198474	exon3	c.A714C	p.K238N	.	.	81	31	116	0	.	70
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248844793	248844793	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR14I1	NM_001004734	exon1	c.G813T	p.V271V	.	.	65	14	64	0	.	46
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095697	124095697	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001007249	exon1	c.A300C	p.T100T	.	.	68	21	103	0	.	.
OR8J1	219477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56127868	56127868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR8J1	NM_001005205	exon1	c.C146A	p.T49N	.	.	145	71	168	0	.	70
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34558586	34558586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PARD3	NM_019619	exon22	c.A3427G	p.S1143G	.	.	77	28	96	0	.	92
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	55582876	55582876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDH15	NM_001142763	exon35	c.C4631A	p.S1544X	.	.	53	22	65	0	.	193
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433011	140433011	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDHB1	NM_013340	exon1	c.T1956A	p.A652A	.	.	81	33	108	0	.	90
PJA2	9867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	108714271	108714271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PJA2	NM_014819	exon4	c.A917G	p.H306R	.	.	86	18	90	0	.	92
PLEKHO1	51177	ucsc.edu	37	1	150131221	150131221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PLEKHO1	NM_016274	exon6	c.G733A	p.E245K	.	.	156	1	150	0	.	226
PNISR	25957	broad.mit.edu;bcgsc.ca	37	6	99856060	99856060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PNISR	NM_015491	exon6	c.A761G	p.E254G	.	.	87	7	86	0	.	22
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79322771	79322771	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PRUNE2	NM_015225	exon8	c.G4419A	p.E1473E	.	.	37	19	65	0	.	157
PRX	57716	broad.mit.edu	37	19	40904547	40904547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PRX	NM_181882	exon6	c.C361T	p.R121W	.	.	38	4	66	0	.	92
PSAT1	29968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	80923477	80923477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PSAT1	NM_021154	exon6	c.T718C	p.Y240H	.	.	31	18	40	0	.	91
PXDNL	137902	broad.mit.edu;bcgsc.ca	37	8	52233381	52233381	+	Missense_Mutation	SNP	C	C	G	rs201816215		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PXDNL	NM_144651	exon22	c.G4223C	p.R1408P	.	.	51	7	76	0	C|0.998;G|0.002	70
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	160243510	160243510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RAPGEF2	NM_014247	exon4	c.G382T	p.E128X	.	.	71	53	152	0	.	637
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38794569	38794569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP1	NM_005739	exon12	c.A1482C	p.E494D	.	.	78	43	88	0	.	697
RASGRP4	115727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38907809	38907809	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP4	NM_001146202	exon9	c.796-1G>T	.	.	.	16	9	62	0	.	660
RB1	5925	hgsc.bcm.edu	37	13	48954325	48954334	+	Frame_Shift_Del	DEL	TCATATGTCT	TCATATGTCT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TCATATGTCT	TCATATGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1446_1455del	p.482_485del	.	.	44	0	204	0	.	3784
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954325	48954326	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1446_1447del	p.482_483del	.	.	44	20	204	0	.	3784
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954328	48954334	+	Frame_Shift_Del	DEL	TATGTCT	TATGTCT	-	rs5803433	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TATGTCT	TATGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1449_1455del	p.483_485del	.	.	36	20	206	0	.	3784
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	24579152	24579152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBBP6	NM_006910	exon16	c.T1992G	p.D664E	.	.	178	15	250	0	.	230
RBM23	55147	ucsc.edu;mdanderson.org	37	14	23371268	23371268	+	Silent	SNP	A	A	G	rs56708790	byfrequency	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBM23	NM_001077351	exon12	c.T1167C	p.A389A	.	.	55	14	58	0	A|0.887;G|0.113	91
RBMXL2	27288	broad.mit.edu;mdanderson.org	37	11	7110658	7110658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBMXL2	NM_014469	exon1	c.G307A	p.G103S	.	.	20	4	17	0	.	68
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167666394	167666394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RCSD1	NM_052862	exon6	c.A533C	p.Q178P	.	.	167	12	167	0	.	517
RHOXF1	158800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119243261	119243261	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RHOXF1	NM_139282	exon4	c.445-1G>C	.	.	.	39	35	64	0	.	130
RNF175	285533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154636682	154636682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RNF175	NM_173662	exon7	c.G763A	p.V255I	.	.	49	17	72	1	.	47
RPS4Y1	6192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	2722723	2722724	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RPS4Y1	NM_001008	exon5	c.443_444insCT	p.R148fs	.	.	122	99	141	0	.	424
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34109089	34109089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RYR3	NM_001036	exon75	c.A10529T	p.H3510L	.	.	94	29	112	1	.	520
SGSM1	129049	bcgsc.ca;mdanderson.org	37	22	25270403	25270403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SGSM1	NM_133454	exon13	c.G1313A	p.S438N	.	.	64	29	80	2	.	27
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22380971	22380971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC17A6	NM_020346	exon4	c.T471G	p.A157A	.	.	47	20	62	0	.	580
SLC27A3	11000	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153752329	153752329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC27A3	NM_024330	exon10	c.A2044G	p.K682E	.	.	70	38	105	2	.	91
SMAD6	4091	ucsc.edu	37	15	67073369	67073369	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SMAD6	NM_005585	exon4	c.C987T	p.S329S	.	.	31	4	23	0	.	415
SPTBN2	6712	ucsc.edu	37	11	66473246	66473246	+	Silent	SNP	C	C	T	rs144017062	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SPTBN2	NM_006946	exon13	c.G1716A	p.L572L	.	.	38	4	53	0	C|1.000;G|0.000	155
SSTR4	6754	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23016896	23016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SSTR4	NM_001052	exon1	c.G776A	p.R259K	.	.	33	10	44	0	.	522
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423271	107423271	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ST6GAL2	NM_032528	exon6	c.C1453T	p.L485L	.	.	75	35	89	0	.	191
STX10	8677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13259885	13259886	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	STX10	NM_003765	exon4	c.321_322insT	p.V107fs	.	.	71	16	139	0	.	90
SUFU	51684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104268937	104268937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SUFU	NM_001178133	exon2	c.C194A	p.P65Q	.	.	62	21	81	0	.	2246
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48418242	48418242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TBC1D25	NM_002536	exon6	c.G946T	p.D316Y	.	.	63	53	77	0	.	131
TEF	7008	broad.mit.edu	37	22	41783523	41783523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TEF	NM_003216	exon2	c.G326A	p.G109D	.	.	78	5	90	0	.	91
TEX36	387718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127350498	127350498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001128202	exon2	c.G100T	p.A34S	.	.	64	25	82	0	.	.
TLN1	7094	ucsc.edu	37	9	35705657	35705657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	TLN1,NS,carcinoma,0	TLN1	NM_006289	exon43	c.C5624A	p.S1875X	.	.	37	4	56	1	.	609
TMEM74	157753	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796877	109796877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TMEM74	NM_153015	exon2	c.G451T	p.A151S	.	.	240	114	143	0	.	228
TRHR	7201	broad.mit.edu;mdanderson.org	37	8	110099964	110099964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRHR	NM_003301	exon1	c.T223A	p.L75M	.	.	131	10	79	1	.	620
TRIM26	7726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30154170	30154170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM26	NM_001242783	exon9	c.T1103A	p.V368D	.	.	65	25	61	1	.	206
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248024000	248024000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM58	NM_015431	exon2	c.A502G	p.T168A	.	.	140	67	163	0	.	96
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73442764	73442764	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon6	c.A972T	p.T324T	.	.	81	20	80	0	.	521
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73479369	73479369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon2	c.C236G	p.P79R	.	.	38	12	51	0	.	521
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98552830	98552830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRRAP	NM_001244580	exon40	c.A5819T	p.Q1940L	.	.	69	35	83	0	.	923
UBC	7316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125397123	125397123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UBC	NM_021009	exon2	c.C1195T	p.P399S	.	.	238	87	310	0	.	46
UGGT2	55757	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	96555132	96555132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGGT2	NM_020121	exon21	c.T2478C	p.D826D	.	.	94	20	83	0	.	92
UGT2A3	79799	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69816874	69816874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGT2A3	NM_024743	exon1	c.G605T	p.R202I	.	.	137	60	171	2	.	92
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216040477	216040477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	USH2A	NM_206933	exon44	c.A8717G	p.N2906S	.	.	134	57	129	0	.	115
VPS13C	54832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62201321	62201321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS13C	NM_020821	exon65	c.G8848A	p.G2950R	.	.	81	10	73	0	.	92
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184646286	184646286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS8	NM_001009921	exon31	c.G2679C	p.E893D	.	.	96	44	116	0	.	91
WDFY4	57705	ucsc.edu	37	10	49988155	49988155	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	WDFY4	NM_020945	exon19	c.C3567T	p.G1189G	.	.	44	4	56	0	.	22
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60242216	60242216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZCCHC2	NM_017742	exon13	c.C2902G	p.P968A	.	.	52	21	58	0	.	432
ZMYM1	79830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35578710	35578710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZMYM1	NM_024772	exon10	c.A1279G	p.N427D	.	.	144	31	238	0	.	90
ZNF135	7694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579143	58579143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF135	NM_007134	exon4	c.A1363G	p.I455V	.	.	74	9	111	0	.	91
ZNF510	22869	ucsc.edu	37	9	99521664	99521664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF510	NM_014930	exon6	c.C1448T	p.T483I	.	.	37	4	91	0	.	90
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97916530	97916530	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF518A	.	.	.	.	.	.	82	28	161	0	.	23
ZNF551	90233	broad.mit.edu;ucsc.edu	37	19	58193543	58193543	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF551	NM_138347	exon1	c.G12T	p.P4P	.	.	17	10	17	0	.	91
ZNF669	79862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247264138	247264138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF669	NM_024804	exon4	c.933delT	p.C311fs	.	.	92	22	85	0	.	90
ZNF680	340252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	63982871	63982872	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF680	NM_178558	exon4	c.260_261del	p.87_87del	.	.	46	14	55	0	.	91
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152414	149152414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF777	NM_015694	exon2	c.C700A	p.L234M	.	.	66	26	73	0	.	136
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	111	48	95	4	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	87	34	83	3	.	.
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100808723	100808724	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	.	.	.	p.L271I	.	.	.	.	.	.	.	
