Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCG2	9429	bcgsc.ca	37	4	89036136	89036136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ABCG2	NM_004827	exon8	c.G916A	p.A306T	.	.	66	6	86	0	.	90
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6147641	6147641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ACSBG2	NM_030924	exon3	c.C252G	p.N84K	.	.	111	24	99	0	.	23
ADAM21P1	145241	ucsc.edu	37	14	70714144	70714144	+	RNA	SNP	A	A	G	rs3751522		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	.	.	.	49	6	80	2	.	.
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79058475	79058475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ADAMTS7	NM_014272	exon19	c.C3778A	p.L1260M	.	.	35	23	42	0	.	226
ADCY1	107	ucsc.edu	37	7	45725565	45725565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ADCY1	NM_021116	exon13	c.G2078A	p.G693D	.	.	43	4	35	0	.	95
ANKRD30A	91074	hgsc.bcm.edu;bcgsc.ca	37	10	37455583	37455583	+	Silent	SNP	G	G	T	rs75413857	bycluster;alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ANKRD30A	NM_052997	exon19	c.G1947T	p.A649A	.	.	789	155	702	1	A|1.000;|0.000	161
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	.	.	.	89	9	114	1	.	.
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	69995875	69995875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ANO1	NM_018043	exon12	c.C1318T	p.L440F	.	.	108	50	136	0	.	47
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	21246408	21246408	+	Nonsense_Mutation	SNP	C	C	A	rs150005693	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	APOB	NM_000384	exon17	c.G2593T	p.E865X	.	.	101	64	76	0	C|1.000;T|0.000	175
ARHGEF17	9828	ucsc.edu	37	11	73020736	73020736	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ARHGEF17	NM_014786	exon1	c.C1053T	p.C351C	.	.	40	4	40	0	.	227
ARHGEF5	7984	bcgsc.ca;mdanderson.org	37	7	144059794	144059794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ARHGEF5	NM_005435	exon2	c.C32G	p.S11C	.	.	616	79	750	4	.	229
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93755396	93755396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ARL13B	NM_182896	exon5	c.G487A	p.E163K	.	.	361	37	282	0	.	91
ARL15	54622	ucsc.edu;bcgsc.ca	37	5	53450429	53450429	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ARL15	NM_019087	exon3	c.G234A	p.L78L	.	.	429	204	428	3	.	91
ASNS	440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97486092	97486092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ASNS	NM_133436	exon8	c.C940G	p.L314V	.	.	302	87	309	1	.	91
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154320946	154320946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ATP8B2	NM_020452	exon27	c.G3325A	p.V1109I	.	.	113	94	75	0	.	92
AURKAIP1	54998	hgsc.bcm.edu	37	1	1309214	1309214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	AURKAIP1	NM_001127229	exon4	c.G567T	p.W189C	.	.	15	13	7	0	.	93
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143623348	143623348	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	BAI1	NM_001702	exon27	c.C3753T	p.G1251G	.	.	49	14	37	0	.	1129
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103518669	103518669	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001204425	exon18	c.C3619G	p.Q1207E	.	.	675	128	271	0	.	.
BPIFA2	140683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31768351	31768351	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_080574	exon8	c.G735T	p.L245L	.	.	119	30	116	0	.	.
BRSK2	9024	broad.mit.edu	37	11	1459558	1459558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	BRSK2	NM_001256630	exon3	c.T347C	p.L116P	.	.	90	5	106	0	.	333
C11orf82	220042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82644353	82644353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C11orf82	NM_145018	exon6	c.A1973G	p.N658S	.	.	82	18	78	0	.	70
C16orf90	646174	ucsc.edu	37	16	3544855	3544855	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001080524	exon2	c.A69T	p.G23G	.	.	19	4	24	0	.	.
C18orf25	147339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	43796312	43796312	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C18orf25	NM_145055	exon2	c.A466T	p.K156X	.	.	141	57	129	0	.	515
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162344018	162344018	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C1orf111	NM_182581	exon3	c.C606A	p.I202I	.	.	122	42	89	0	.	69
C2CD2L	9854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118986773	118986773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C2CD2L	NM_014807	exon14	c.G1931T	p.G644V	.	.	29	9	34	0	.	68
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118980899	118980899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C2CD2L	NM_014807	exon2	c.A440G	p.E147G	.	.	75	35	103	0	.	68
C5	727	bcgsc.ca	37	9	123759834	123759834	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	C5	NM_001735	exon21	c.A2781G	p.L927L	.	.	133	6	93	0	.	92
CALB1	793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	91094853	91094853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CALB1	NM_004929	exon1	c.73delG	p.A25fs	.	.	156	62	84	0	.	91
CCDC66	285331	hgsc.bcm.edu	37	3	56650054	56650054	+	Missense_Mutation	SNP	T	T	C	rs111934125		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCDC66	NM_001141947	exon13	c.T1816C	p.S606P	.	.	169	14	137	0	C|1.000;|0.000	135
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112326103	112326103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCDC80	NM_199511	exon7	c.G2426A	p.G809D	.	.	129	19	85	0	.	92
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167549831	167549831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CCR6	NM_004367	exon3	c.T113C	p.L38S	.	.	66	48	87	0	.	227
CDC14C	168448	bcgsc.ca	37	7	48964594	48964594	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	.	.	.	88	22	132	0	.	.
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45153829	45153829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CDCP1	NM_178181	exon3	c.G401T	p.S134I	.	.	163	96	140	0	.	117
CDK2	1017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56365394	56365394	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CDK2	NM_001798	exon7	c.C882G	p.P294P	.	.	91	31	116	0	.	1511
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	46930838	46930838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CELSR1	NM_014246	exon1	c.A2230G	p.I744V	.	.	37	12	39	0	.	525
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220404347	220404347	+	Missense_Mutation	SNP	C	C	T	rs142415191	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CHPF	NM_024536	exon4	c.G2086A	p.E696K	.	.	171	54	192	0	C|0.999;G|0.000;T|0.000	90
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40351330	40351330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CHRNA9	NM_017581	exon4	c.G797T	p.G266V	.	.	252	138	208	0	.	96
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013401	99013401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CNGA3	NM_001298	exon8	c.G1768A	p.E590K	.	.	53	17	57	0	.	96
CNTN1	1272	broad.mit.edu	37	12	41327285	41327285	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CNTN1	NM_001256063	exon8	c.T726C	p.A242A	.	.	109	6	115	0	.	1149
COG4	25839	ucsc.edu	37	16	70543844	70543844	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	COG4	NM_015386	exon6	c.A819G	p.A273A	.	.	38	4	81	0	.	90
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130103715	130103715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_153264	exon5	c.C1369A	p.Q457K	.	.	131	69	100	0	.	.
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130103724	130103724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_153264	exon5	c.C1378G	p.Q460E	.	.	134	67	103	0	.	.
COX3	5742	broad.mit.edu	37	MT	9812	9812	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	ENST00000362079	exon1	c.C606T	p.G202G	.	.	328	9	15	0	.	.
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68334896	68334896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CPA6	NM_020361	exon11	c.C1157A	p.A386D	.	.	165	21	121	0	.	92
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	43884410	43884410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CRHR1	NM_001145148	exon2	c.C68T	p.A23V	.	.	58	27	40	0	.	522
CROCCP3	114819	broad.mit.edu	37	1	16812970	16812970	+	RNA	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	.	.	.	67	6	53	1	.	.
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3141773	3141773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CSMD1	NM_033225	exon26	c.G4046A	p.S1349N	.	.	38	23	140	0	.	86
CSPG4	1464	ucsc.edu	37	15	75982058	75982058	+	Missense_Mutation	SNP	T	T	A	rs147116973	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CSPG4	NM_001897	exon3	c.A1348T	p.R450W	.	.	43	4	63	1	T|0.962;A|0.038	229
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23546707	23546707	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	CST9L	NM_080610	exon2	c.A258G	p.V86V	.	.	83	38	123	0	.	90
DAAM2	23500	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39864686	39864686	+	Missense_Mutation	SNP	C	C	A	rs146966805	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DAAM2	NM_015345	exon20	c.C2440A	p.R814S	.	.	89	42	63	0	C|0.999;T|0.001	228
DDX39B	7919	broad.mit.edu	37	6	31500690	31500690	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DDX39B	NM_004640	exon8	c.736-2A>C	.	.	.	114	16	69	8	.	92
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124354994	124354994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DNAH10	NM_207437	exon43	c.A7247T	p.Y2416F	.	.	64	15	65	0	.	95
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169081429	169081429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DOCK2	NM_004946	exon2	c.C66A	p.S22R	.	.	50	16	51	0	.	97
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66259030	66259030	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DPP3	NM_130443	exon8	c.C864A	p.G288G	.	.	53	22	47	0	.	46
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27156187	27156187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DPYSL5	NM_001253724	exon7	c.C776G	p.A259G	.	.	129	65	99	0	.	92
DRG2	1819	bcgsc.ca	37	17	18003724	18003724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DRG2	NM_001388	exon6	c.A515T	p.K172M	.	.	68	6	92	0	.	91
DYNC1H1	1778	broad.mit.edu	37	14	102482330	102482330	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	DYNC1H1	NM_001376	exon36	c.C7380A	p.S2460S	.	.	50	5	53	1	.	98
ELMO2	63916	ucsc.edu	37	20	45000243	45000243	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ELMO2	NM_182764	exon17	c.A1668T	p.R556R	.	.	45	4	45	0	.	91
EMP2	2013	ucsc.edu	37	16	10626800	10626800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EMP2	NM_001424	exon5	c.A466G	p.S156G	.	.	33	4	20	0	.	90
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184295208	184295208	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EPHB3	NM_004443	exon6	c.C1432A	p.R478R	.	.	377	201	380	0	.	1455
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	43543304	43543304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	EPSTI1	NM_001002264	exon3	c.A257T	p.Q86L	.	.	25	18	65	0	.	91
ERBB2IP	55914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65371047	65371047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ERBB2IP	NM_001253699	exon23	c.G3973T	p.A1325S	.	.	323	155	294	0	.	653
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	6248626	6248626	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	F13A1	NM_000129	exon6	c.C717A	p.C239X	.	.	60	24	35	0	.	519
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	.	.	.	40	4	35	0	.	.
FAM3D	131177	bcgsc.ca	37	3	58622899	58622899	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAM3D	NM_138805	exon8	c.C427T	p.L143L	.	.	93	6	67	0	.	90
FAR1	84188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13750208	13750208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAR1	NM_032228	exon12	c.T1435C	p.W479R	.	.	53	18	43	0	.	92
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92577146	92577146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FAT3	NM_001008781	exon18	c.G10613A	p.R3538H	.	.	90	40	121	0	.	73
FBLN2	2199	ucsc.edu	37	3	13655506	13655506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FBLN2	NM_001998	exon5	c.T1571C	p.L524P	.	.	41	4	21	0	.	91
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55396884	55396884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FCAR	NM_133279	exon3	c.G308A	p.R103K	.	.	86	31	83	0	.	92
FEZ2	9637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36808548	36808548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FEZ2	NM_001042548	exon4	c.G519A	p.M173I	.	.	175	16	146	0	.	23
FLG	2312	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152277615	152277615	+	Missense_Mutation	SNP	G	G	T	rs146017726	byfrequency;alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FLG	NM_002016	exon3	c.C9747A	p.H3249Q	.	.	160	52	97	0	G|0.997;A|0.003	106
FOXP1	27086	bcgsc.ca	37	3	71096097	71096097	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FOXP1	NM_001244815	exon5	c.T666C	p.A222A	.	.	68	5	85	0	.	415
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262451	39262451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FREM2	NM_207361	exon1	c.G970A	p.A324T	.	.	129	95	144	0	.	100
FRG1	2483	bcgsc.ca	37	4	190881927	190881927	+	Missense_Mutation	SNP	A	A	G	rs74692808	bycluster	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FRG1	NM_004477	exon7	c.A562G	p.T188A	.	.	487	132	383	75	A|0.500;G|0.500	90
FRZB	2487	bcgsc.ca	37	2	183702724	183702724	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	FRZB	NM_001463	exon5	c.A813T	p.E271D	.	.	106	6	126	0	.	948
GAREML	150946	hgsc.bcm.edu	37	2	26408064	26408064	+	Silent	SNP	T	T	C	rs4665833		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001168241	exon4	c.T1347C	p.D449D	.	.	7	7	0	0	T|0.084;C|0.916	.
GFI1B	8328	mdanderson.org	37	9	135864555	135864555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GFI1B	NM_004188	exon5	c.C618A	p.S206R	.	.	65	19	58	0	.	154
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57428698	57428698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GNAS	NM_001077490	exon1	c.G191T	p.G64V	.	.	46	27	61	0	.	4767
GTF2IRD2P1	401375	bcgsc.ca	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	.	.	.	36	6	38	1	.	.
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810405	106810405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	GUCY1A2	NM_000855	exon4	c.C987G	p.F329L	.	.	150	55	163	0	.	589
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43484630	43484630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HECW1	NM_015052	exon11	c.C1859A	p.P620H	.	.	31	11	34	0	.	669
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28377352	28377352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HERC2	NM_004667	exon81	c.C12464T	p.A4155V	.	.	159	66	225	0	.	234
HHIP	64399	broad.mit.edu;bcgsc.ca	37	4	145627786	145627786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HHIP	NM_022475	exon5	c.T935C	p.I312T	.	.	124	9	207	0	.	283
HID1	283987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72959876	72959876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_030630	exon3	c.G346T	p.G116C	.	.	87	28	79	0	.	.
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60324102	60324102	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HOOK1	NM_015888	exon13	c.A1245G	p.R415R	.	.	206	167	251	0	.	154
HPS6	79803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103827340	103827340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	HPS6	NM_024747	exon1	c.G2109T	p.E703D	.	.	44	22	33	0	.	90
IER2	9592	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13264628	13264628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	IER2	NM_004907	exon2	c.G628T	p.D210Y	.	.	10	4	19	0	.	537
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77692543	77692543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	INTS4	NM_033547	exon3	c.G326A	p.C109Y	.	.	58	24	56	0	.	92
ITGA2B	3674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42453683	42453683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ITGA2B	NM_000419	exon23	c.C2341G	p.L781V	.	.	91	42	77	0	.	228
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17942056	17942056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	JAK3	NM_000215	exon21	c.G2959A	p.G987S	.	.	50	25	61	0	.	2418
KDM3B	51780	broad.mit.edu;bcgsc.ca	37	5	137754700	137754700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KDM3B	NM_016604	exon14	c.G3494C	p.G1165A	.	.	333	15	266	1	.	542
KDM3B	51780	broad.mit.edu;bcgsc.ca	37	5	137766109	137766109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KDM3B	NM_016604	exon22	c.C5065T	p.H1689Y	.	.	136	11	125	1	.	542
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6511774	6511774	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KIAA0753	NM_014804	exon10	c.C1723G	p.L575V	.	.	65	48	79	0	.	90
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90190176	90190176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KIF7	NM_198525	exon7	c.C1673A	p.S558Y	.	.	43	26	81	0	.	523
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	126062613	126062613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KLF15	NM_014079	exon3	c.A1208T	p.H403L	.	.	210	52	261	0	.	91
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123070262	123070262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KNTC1	NM_014708	exon37	c.A3614T	p.E1205V	.	.	63	29	66	0	.	543
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152733416	152733416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KPRP	NM_001025231	exon2	c.G1352T	p.R451L	.	.	52	48	32	0	.	95
KREMEN1	83999	broad.mit.edu;bcgsc.ca	37	22	29490382	29490382	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	KREMEN1	NM_001039570	exon2	c.G234C	p.G78G	.	.	121	8	98	0	.	659
LACE1	246269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108645051	108645051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LACE1	NM_145315	exon2	c.G162T	p.E54D	.	.	83	71	70	0	.	90
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21422647	21422647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LAMA3	NM_001127717	exon29	c.A3536T	p.E1179V	.	.	183	75	132	0	.	100
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35624619	35624619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LGI4	NM_139284	exon3	c.G292T	p.G98C	.	.	58	28	39	0	.	91
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	197687166	197687166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LMLN	NM_001136049	exon1	c.G74T	p.G25V	.	.	114	33	92	0	.	91
LOC653486	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	194445	194445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001097610	exon3	c.G283A	p.A95T	.	.	58	21	73	0	.	.
LRGUK	136332	ucsc.edu	37	7	133821856	133821856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LRGUK	NM_144648	exon2	c.G378T	p.E126D	.	.	44	4	55	0	.	227
LRRC18	474354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50121829	50121829	+	Silent	SNP	G	G	A	rs144747704	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LRRC18	NM_001006939	exon1	c.C372T	p.R124R	.	.	93	30	83	1	G|0.999;A|0.001	92
LRRC37A3	374819	broad.mit.edu	37	17	62891240	62891240	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LRRC37A3	NM_199340	exon3	c.C2136G	p.H712Q	.	.	149	40	109	1	.	90
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969693	43969693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	LYPD3	NM_014400	exon1	c.G31T	p.A11S	.	.	37	15	41	1	.	91
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72723140	72723140	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MAMDC2	NM_153267	exon3	c.T162C	p.Y54Y	.	.	56	29	45	0	.	91
MAP3K19	80122	ucsc.edu	37	2	135757513	135757513	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_025052	exon4	c.A308T	p.E103V	.	.	45	5	57	0	.	.
MAP3K19	80122	broad.mit.edu;ucsc.edu	37	2	135757514	135757514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_025052	exon4	c.G307T	p.E103X	.	.	47	5	59	1	.	.
MAP3K3	4215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61768464	61768464	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MAP3K3	NM_203351	exon14	c.G1308A	p.E436E	.	.	33	14	50	0	.	979
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6302684	6302684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MCPH1	NM_001172574	exon8	c.A1441G	p.I481V	.	.	49	22	111	0	.	229
MEOX1	4222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41738808	41738808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MEOX1	NM_004527	exon1	c.C95T	p.A32V	.	.	144	59	96	0	.	90
MKI67IP	84365	ucsc.edu	37	2	122493222	122493222	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MKI67IP	NM_032390	exon2	c.T210G	p.T70T	.	.	26	4	51	0	.	90
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MUC6	NM_005961	exon31	c.T5966C	p.F1989S	.	.	274	17	282	3	.	23
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1017131	1017131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MUC6	NM_005961	exon31	c.C5670A	p.H1890Q	.	.	126	21	139	0	.	23
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108203979	108203979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYH15	NM_014981	exon12	c.A1133G	p.Q378R	.	.	70	29	65	0	.	73
MYLIP	29116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	16145305	16145305	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYLIP	NM_013262	exon6	c.T1005A	p.V335V	.	.	213	97	141	0	.	91
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26164107	26164107	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYO18B	NM_032608	exon4	c.C224G	p.P75R	.	.	266	71	266	0	.	142
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171092541	171092541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	MYO3B	NM_001083615	exon7	c.C644A	p.A215D	.	.	78	17	77	0	.	530
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47043973	47043973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NBEAL2	NM_015175	exon32	c.G5264T	p.R1755L	.	.	46	27	56	0	.	69
NCAPG2	54892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158437057	158437057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NCAPG2	NM_017760	exon27	c.A3304G	p.R1102G	.	.	60	12	72	0	.	272
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71087033	71087033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NCOA2	NM_006540	exon5	c.G321T	p.Q107H	.	.	99	23	63	0	.	639
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13916	13916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	ENST00000361567	exon1	c.G1580A	p.G527E	.	.	273	197	13	0	.	.
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156890181	156890181	+	Missense_Mutation	SNP	C	C	A	rs200083422		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NIPAL4	NM_001099287	exon2	c.C303A	p.S101R	.	.	99	28	120	0	C|0.999;A|0.001	68
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	31523091	31523097	+	Frame_Shift_Del	DEL	CCAAGAT	CCAAGAT	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	CCAAGAT	CCAAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NOL4	NM_003787	exon9	c.1474_1480del	p.492_494del	.	.	115	0	108	0	.	93
NXF4	55999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101818277	101818277	+	RNA	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	NXF4	.	.	.	.	.	.	80	63	84	0	.	182
NXPE2	120406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114569227	114569227	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_182495	exon3	c.A593C	p.E198A	.	.	115	34	150	0	.	.
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158517456	158517456	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	OR6Y1	NM_001005189	exon1	c.G440C	p.G147A	.	.	91	83	72	0	.	69
ORC3	23595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88374575	88374575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ORC3	NM_181837	exon18	c.G1951C	p.E651Q	.	.	119	94	97	0	.	206
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140180920	140180920	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHA3	NM_031497	exon1	c.C138A	p.G46G	.	.	51	16	57	0	.	98
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222940	140222940	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHA8	NM_031856	exon1	c.G2034A	p.A678A	.	.	95	55	83	0	.	92
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140573693	140573693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHB10	NM_018930	exon1	c.C1568A	p.A523D	.	.	62	21	53	0	.	92
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140562729	140562730	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCDHB16	NM_020957	exon1	c.595_596insA	p.E199fs	.	.	76	27	69	0	.	92
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56140768	56140769	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCK1	NM_002591	exon10	c.1777_1778del	p.593_593del	.	.	144	0	151	0	.	227
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82546021	82546021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon7	c.A11281C	p.K3761Q	.	.	99	32	118	1	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82583500	82583500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon5	c.G6769T	p.A2257S	.	.	48	16	56	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764880	82764880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCLO	NM_014510	exon3	c.G1986T	p.K662N	.	.	58	27	96	0	.	29
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17240976	17240976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PCSK2	NM_002594	exon2	c.A269G	p.E90G	.	.	107	59	121	0	.	157
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55156636	55156636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PDGFRA	NM_006206	exon22	c.A3037G	p.S1013G	.	.	186	24	126	0	.	9497
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	609135	609135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PHRF1	NM_020901	exon14	c.C3676G	p.H1226D	.	.	28	9	24	0	.	22
PIK3CG	5294	bcgsc.ca	37	7	106515179	106515179	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PIK3CG	NM_002649	exon5	c.G2322A	p.L774L	.	.	73	6	84	0	.	1316
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	94316706	94316706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PIWIL4	NM_152431	exon5	c.C606A	p.C202X	.	.	110	46	138	0	.	91
PLVAP	83483	ucsc.edu	37	19	17487766	17487766	+	Missense_Mutation	SNP	C	C	T	rs144117840		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PLVAP	NM_031310	exon1	c.G332A	p.R111H	.	.	42	4	44	0	C|1.000;T|0.000	90
POTEE	445582	ucsc.edu	37	2	132021815	132021815	+	Silent	SNP	G	G	A	rs7424053	bycluster	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_001083538	exon15	c.G2787A	p.T929T	.	.	72	8	101	2	.	.
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63042384	63042384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PPM1H	NM_020700	exon10	c.G1430T	p.R477L	.	.	55	27	53	0	.	637
PRB2	653247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11546698	11546698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRB2	NM_006248	exon3	c.G314T	p.G105V	.	.	121	56	129	0	.	22
PRODH2	58510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36297613	36297613	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRODH2	NM_021232	exon7	c.G1026T	p.G342G	.	.	51	27	56	0	.	92
PRSS58	136541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141955440	141955440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PRSS58	NM_001001317	exon3	c.G94T	p.V32F	.	.	133	58	163	0	.	24
PTPN5	84867	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18754797	18754797	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPN5	NM_032781	exon11	c.C1203A	p.I401I	.	.	32	16	48	0	.	229
PTPRS	5802	broad.mit.edu;mdanderson.org	37	19	5223017	5223017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPRS	NM_002850	exon18	c.G2786A	p.R929H	.	.	21	11	20	0	.	357
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121652602	121652602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	PTPRZ1	NM_002851	exon12	c.T3502A	p.L1168I	.	.	45	18	102	0	.	699
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220406172	220406172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RAB3GAP2	NM_012414	exon2	c.G149T	p.G50V	.	.	213	178	111	0	.	90
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17697493	17697493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RAI1	NM_030665	exon3	c.G1231T	p.A411S	.	.	58	36	105	0	.	91
RANGAP1	5905	ucsc.edu	37	22	41650402	41650402	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RANGAP1	NM_002883	exon11	c.G1170A	p.E390E	.	.	43	5	66	2	.	90
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	49039196	49039228	+	In_Frame_Del	DEL	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	GGTCTTCATGCAGAGACTGAAAACAAATATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RB1	NM_000321	exon22	c.2274_2306del	p.758_769del	.	.	51	17	164	0	.	3784
RHPN1	114822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144462150	144462150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RHPN1	NM_052924	exon9	c.G1097A	p.G366D	.	.	37	8	44	0	.	67
RIT2	6014	bcgsc.ca	37	18	40323562	40323576	+	In_Frame_Del	DEL	TCTTGCGAATTTCCC	TCTTGCGAATTTCCC	-	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	TCTTGCGAATTTCCC	TCTTGCGAATTTCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RIT2	NM_002930	exon5	c.536_550del	p.179_184del	.	.	145	6	99	0	.	1084
RNF135	84282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29325932	29325932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RNF135	NM_032322	exon5	c.G1022T	p.G341V	.	.	147	70	108	0	.	227
RUSC1	23623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155292170	155292170	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RUSC1	NM_001105203	exon2	c.G606A	p.R202R	.	.	363	310	228	0	.	92
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	39001380	39001380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR1	NM_001042723	exon60	c.C9081A	p.S3027R	.	.	91	42	95	0	.	100
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39001379	39001379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR1	NM_001042723	exon60	c.G9080T	p.S3027I	.	.	91	41	94	0	.	100
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	33954429	33954429	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	RYR3	NM_001243996	exon35	c.C4698T	p.S1566S	.	.	37	4	52	0	.	520
SERPINF2	5345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	1657772	1657772	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SERPINF2	NM_000934	exon10	c.T1420C	p.L474L	.	.	46	35	37	0	.	226
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47155493	47155493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SETD2	NM_014159	exon5	c.T4588A	p.S1530T	.	.	166	12	116	0	.	1273
SH3RF3	344558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109964184	109964184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SH3RF3	NM_001099289	exon2	c.C628A	p.P210T	.	.	90	9	153	0	.	24
SH3RF3	344558	ucsc.edu	37	2	110049052	110049052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SH3RF3	NM_001099289	exon6	c.G1499A	p.G500D	.	.	30	4	97	0	.	24
SIGLEC15	284266	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	43418741	43418741	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SIGLEC15	NM_213602	exon4	c.G555T	p.A185A	.	.	14	7	13	0	.	90
SLC17A1	6568	bcgsc.ca	37	6	25811663	25811663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.G1141A	p.G381S	.	.	389	24	245	1	.	94
SLC17A1	6568	hgsc.bcm.edu;bcgsc.ca	37	6	25811666	25811666	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.T1138C	p.L380L	.	.	395	26	250	0	.	94
SLC17A1	6568	hgsc.bcm.edu;bcgsc.ca	37	6	25811734	25811734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC17A1	NM_005074	exon10	c.A1070G	p.Y357C	.	.	278	38	185	0	.	94
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44198616	44198616	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC29A1	NM_004955	exon8	c.C756T	p.L252L	.	.	94	53	75	0	.	154
SLC2A11	66035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24224833	24224833	+	Silent	SNP	G	G	T	rs199527068	alternate_allele	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC2A11	NM_030807	exon8	c.G894T	p.S298S	.	.	47	27	32	1	G|0.999;A|0.000	91
SLC35A5	55032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112300032	112300032	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC35A5	NM_017945	exon6	c.C1068T	p.S356S	.	.	136	44	118	0	.	91
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162719562	162719562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC4A10	NM_001178016	exon7	c.G789T	p.M263I	.	.	110	92	136	0	.	229
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51890828	51890828	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC4A8	NM_001039960	exon22	c.C3001G	p.L1001V	.	.	171	16	178	0	.	95
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1406399	1406399	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC6A3	NM_001044	exon12	c.T1503A	p.V501V	.	.	86	27	87	0	.	157
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	475176	475176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SLC9A3	NM_004174	exon16	c.C2323A	p.L775M	.	.	93	44	107	0	.	90
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1241790	1241790	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SNTG2	NM_018968	exon10	c.849+1G>A	.	.	.	51	15	44	0	.	136
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7705958	7705958	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SORCS2	NM_020777	exon14	c.G1815T	p.S605S	.	.	85	24	60	0	.	91
SPOCD1	90853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32256443	32256443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	SPOCD1	NM_144569	exon16	c.C3412T	p.H1138Y	.	.	66	49	76	0	.	158
SSPO	23145	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149523554	149523554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_198455	exon102	c.A14465G	p.Q4822R	.	.	21	10	20	0	.	.
TAS1R1	80835	broad.mit.edu;mdanderson.org	37	1	6635435	6635435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TAS1R1	NM_138697	exon3	c.C1243T	p.R415X	.	.	44	32	62	1	.	516
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77922702	77922702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TBC1D16	NM_019020	exon8	c.G1510T	p.G504W	.	.	105	16	70	0	.	90
TBX5	6910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	114823367	114823367	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TBX5	NM_000192	exon7	c.G669T	p.T223T	.	.	70	17	88	0	.	98
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133899348	133899348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TG	NM_003235	exon9	c.C1731A	p.F577L	.	.	246	63	152	0	.	145
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128899810	128899810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TMEM132C	NM_001136103	exon2	c.G619C	p.A207P	.	.	95	52	108	0	.	68
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19687499	19687499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TMPRSS15	NM_002772	exon17	c.C1996G	p.L666V	.	.	87	38	79	0	.	160
TP53	7157	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	7578188	7578188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	TP53,NS,carcinoma,+2	TP53	NM_000546	exon6	c.G661T	p.E221X	.	.	89	64	103	0	.	70225
TRAPPC10	7109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45504036	45504036	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TRAPPC10	NM_003274	exon15	c.C2272T	p.L758L	.	.	68	20	45	0	.	92
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135561777	135561777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	NM_020389	exon9	c.A2207T	p.K736M	.	.	148	50	122	0	.	.
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73151774	73151774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TRPM3	NM_001007471	exon25	c.A4219G	p.M1407V	.	.	125	50	146	0	.	521
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150127752	150127752	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TSC22D2	NM_014779	exon1	c.C615T	p.S205S	.	.	111	26	101	0	.	91
TTLL9	164395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	30522615	30522615	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TTLL9	NM_001008409	exon12	c.C928T	p.Q310X	.	.	97	24	104	0	.	92
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	173	3	212	8	G|0.998;A|0.002	90
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47065468	47065468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UBA1	NM_153280	exon15	c.A1697G	p.Q566R	.	.	103	72	121	0	.	227
UGT2B11	10720	ucsc.edu	37	4	70066376	70066376	+	Missense_Mutation	SNP	C	C	G	rs144149579	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UGT2B11	NM_001073	exon6	c.G1372C	p.D458H	.	.	37	7	63	1	C|0.932;G|0.068	93
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UPF3A	NM_080687	exon2	c.C271T	p.L91L	.	.	124	9	42	1	.	91
UTS2R	2837	bcgsc.ca;mdanderson.org	37	17	80333246	80333246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	UTS2R	NM_018949	exon1	c.C1046A	p.A349D	.	.	25	13	52	2	.	153
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816787	82816787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	VCAN	NM_004385	exon7	c.T2662A	p.S888T	.	.	114	52	84	0	.	238
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167277885	167277885	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	WDR49	NM_178824	exon5	c.G618A	p.R206R	.	.	138	35	94	0	.	155
WDR76	79968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44158353	44158353	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	WDR76	NM_024908	exon13	c.G1644T	p.L548L	.	.	94	39	87	0	.	90
XCL2	6846	ucsc.edu	37	1	168511321	168511321	+	Missense_Mutation	SNP	C	C	T	rs4501820	byfrequency	TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	XCL2	NM_003175	exon2	c.G86A	p.R29K	.	.	39	29	67	11	C|0.902;T|0.098	91
XPNPEP2	7512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128893170	128893170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	XPNPEP2	NM_003399	exon15	c.A1382T	p.D461V	.	.	59	51	65	1	.	130
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100361473	100361473	+	RNA	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZAN	.	.	.	.	.	.	60	22	49	0	.	142
ZFYVE28	57732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2273119	2273119	+	Silent	SNP	G	G	A	rs146945400		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZFYVE28	NM_020972	exon12	c.C2451T	p.D817D	.	.	120	29	93	0	G|1.000;A|0.000	93
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58574854	58574854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF135	NM_007134	exon3	c.G237T	p.E79D	.	.	112	51	100	0	.	91
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6964783	6964783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF215	NM_013250	exon6	c.T623A	p.L208Q	.	.	104	46	145	0	.	514
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11834023	11834023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF823	NM_001080493	exon4	c.G326C	p.G109A	.	.	103	21	107	0	.	24
ZNF830	91603	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	33288615	33288615	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF830	NM_052857	exon1	c.G30T	p.P10P	.	.	121	53	85	1	.	89
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21132144	21132144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF85	NM_001256171	exon5	c.C914A	p.T305N	.	.	49	10	73	0	.	514
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	22575415	22575415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF98	NM_001098626	exon4	c.A622G	p.K208E	.	.	307	152	305	0	.	24
ZNF99	7652	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	22941607	22941607	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	ZNF99	NM_001080409	exon4	c.C1104T	p.P368P	.	.	35	10	45	1	.	24
SI	6476	broad.mit.edu	37	3	164750460	164750461	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	p.C862S	.	.	.	.	.	.	.	
FRG1	2483	bcgsc.ca	37	4	190881978	190881979	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-CC-A7IG-01A-11D-A33K-10	TCGA-CC-A7IG-10A-01D-A33K-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5b4be76e-ec2a-4157-a9ad-333f706662d5	b69cebd4-506b-4c1a-9724-dd4429b628b2	.	.	.	.	.	p.C205H	.	.	.	.	.	.	.	
