Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94543350	94543350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCA4	NM_000350	exon11	c.A1450G	p.K484E	.	.	130	37	126	0	.	162
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101556936	101556936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCC2	NM_000392	exon7	c.G715T	p.V239L	.	.	63	32	79	0	.	91
ABCG1	9619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43646020	43646020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCG1	NM_207174	exon2	c.G315T	p.K105N	.	.	31	24	64	0	.	92
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39018462	39018462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAM32	NM_145004	exon7	c.A572G	p.H191R	.	.	79	31	64	0	.	227
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24254913	24254913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMDEC1	NM_014479	exon6	c.A571G	p.S191G	.	.	88	34	115	0	.	228
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	79059245	79059245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMTS7	NM_014272	exon19	c.C3008A	p.P1003H	.	.	55	21	83	0	.	226
ADAMTSL3	57188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84568428	84568428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMTSL3	NM_207517	exon15	c.T1645A	p.W549R	.	.	174	66	232	0	.	1153
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154569745	154569745	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAR	NM_015840	exon6	c.1935-2A>G	.	.	.	79	36	63	0	.	157
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	131797638	131797638	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADCY8	NM_001115	exon16	c.T3144A	p.P1048P	.	.	75	6	49	0	.	157
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131848557	131848557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	ADCY8,rectum,carcinoma,+2	ADCY8	NM_001115	exon12	c.T2641C	p.F881L	.	.	130	46	98	0	.	157
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147067116	147067116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_024694	exon26	c.G3236A	p.R1079Q	.	.	96	16	72	0	.	.
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36439043	36439043	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_024852	exon5	c.A589T	p.R197W	.	.	177	27	110	0	.	.
AGPAT6	137964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41469773	41469773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AGPAT6	NM_178819	exon7	c.G776A	p.S259N	.	.	91	33	107	0	.	90
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105408806	105408806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AHNAK2	NM_138420	exon7	c.G12982A	p.V4328M	.	.	82	54	93	0	.	47
AKAP4	8852	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	49958228	49958228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AKAP4	NM_003886	exon5	c.T1136C	p.V379A	.	.	27	11	46	1	.	540
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137776523	137776523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AKR1D1	NM_001190907	exon3	c.A271G	p.T91A	.	.	75	14	67	0	.	91
ALPP	250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233243696	233243696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ALPP	NM_001632	exon2	c.C92A	p.P31Q	.	.	109	16	77	0	.	91
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56435757	56435757	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AMFR	NM_001144	exon9	c.975-2A>T	.	.	.	40	8	43	0	.	1009
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	33921086	33921086	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AP2B1	NM_001282	exon2	c.G37T	p.G13X	.	.	314	59	338	0	.	91
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154296109	154296109	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AQP10	NM_080429	exon5	c.G534C	p.L178L	.	.	114	16	98	0	.	90
AQP7	364	bcgsc.ca	37	9	33385771	33385771	+	Missense_Mutation	SNP	C	C	T	rs117663392	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AQP7	NM_001170	exon7	c.G619A	p.G207S	.	.	42	13	36	1	C|0.985;T|0.015	90
AQP7	364	bcgsc.ca	37	9	33385784	33385784	+	Missense_Mutation	SNP	C	C	G	rs114937176		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AQP7	NM_001170	exon7	c.G606C	p.E202D	.	.	44	15	39	4	.	90
AQP7	364	bcgsc.ca	37	9	33385786	33385786	+	Missense_Mutation	SNP	C	C	G	rs76908057		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AQP7	NM_001170	exon7	c.G604C	p.E202Q	.	.	44	15	40	4	.	90
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49687731	49687731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP22	NM_001256025	exon4	c.G417A	p.M139I	.	.	73	21	71	0	.	228
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145806392	145806392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP39	NM_025251	exon4	c.G350A	p.R117H	.	.	55	23	42	0	.	90
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145758592	145758592	+	Missense_Mutation	SNP	C	C	T	rs144988605	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP39	NM_025251	exon10	c.G2806A	p.E936K	.	.	62	24	41	0	C|1.000;G|0.000	90
ARMCX6	54470	hgsc.bcm.edu;bcgsc.ca	37	X	100871178	100871178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARMCX6	NM_001184768	exon4	c.G433T	p.A145S	.	.	99	67	200	0	.	130
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23762387	23762387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASAP3	NM_017707	exon17	c.A1706C	p.N569T	.	.	117	21	114	0	.	155
ASCC1	51008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73892879	73892879	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASCC1	NM_001198799	exon9	c.A891G	p.K297K	.	.	85	23	97	0	.	226
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197102525	197102525	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASPM	NM_001206846	exon6	c.A2374T	p.R792W	.	.	175	62	115	0	.	615
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3918830	3918830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATCAY	NM_033064	exon11	c.T1028C	p.L343P	.	.	63	38	115	0	.	67
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32085719	32085719	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATF6B	NM_004381	exon12	c.A1341T	p.P447P	.	.	107	32	90	0	.	90
ATP12A	479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25284608	25284608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP12A	NM_001185085	exon20	c.A2792G	p.Q931R	.	.	80	39	164	0	.	137
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160098468	160098468	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP1A2	NM_000702	exon9	c.C1044A	p.R348R	.	.	154	31	104	0	.	518
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10382000	10382000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP2B2	NM_001001331	exon21	c.A3163T	p.S1055C	.	.	73	16	69	0	.	95
ATP8B3	148229	broad.mit.edu	37	19	1809732	1809732	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_138813	exon4	c.A312C	p.A104A	.	.	34	6	38	0	.	.
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50255968	50255968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP9A	NM_006045	exon15	c.A1582G	p.T528A	.	.	144	18	147	0	.	94
ATP9B	374868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76966943	76966943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP9B	NM_198531	exon10	c.A961T	p.S321C	.	.	23	17	40	0	.	93
AZGP1	563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99569527	99569527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AZGP1	NM_001185	exon2	c.G179T	p.R60I	.	.	81	18	79	0	.	515
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70092727	70092727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BAI3	NM_001704	exon31	c.T4280C	p.V1427A	.	.	74	26	83	0	.	1148
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707630	96707630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BDKRB2	NM_000623	exon3	c.A965G	p.Y322C	.	.	61	7	111	0	.	662
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113004363	113004363	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BOC	NM_033254	exon19	c.C3108T	p.A1036A	.	.	112	69	95	0	.	157
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	13616094	13616094	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_148894	exon4	c.A900G	p.L300L	.	.	33	21	75	0	.	.
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49698355	49698355	+	Missense_Mutation	SNP	C	C	G	rs141830771	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BSN	NM_003458	exon6	c.C9077G	p.T3026S	.	.	49	13	46	0	C|1.000;T|0.000	97
BTLA	151888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	112185077	112185077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BTLA	NM_181780	exon5	c.G748T	p.E250X	.	.	74	21	63	0	.	90
C1orf170	84808	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	914384	914384	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C1orf170	.	.	.	.	.	.	82	16	65	0	.	68
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22676443	22676443	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_014802	exon7	c.A717T	p.I239I	.	.	54	19	91	0	.	.
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112736436	112736436	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C3orf17	NM_015412	exon2	c.A120T	p.A40A	.	.	99	42	93	0	.	90
C4orf47	441054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186361844	186361844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001114357	exon5	c.A685G	p.T229A	.	.	111	63	168	0	.	.
C6orf57	135154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71289154	71289154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C6orf57	NM_145267	exon2	c.T102G	p.S34R	.	.	102	30	94	0	.	90
C8orf22	492307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	49986888	49986888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001256598	exon4	c.A229G	p.T77A	.	.	63	17	64	0	.	.
C9orf172	389813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139740383	139740383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001080482	exon1	c.T1517C	p.L506P	.	.	51	26	41	0	.	.
CA1	759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	86250479	86250479	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CA1	NM_001738	exon5	c.235+2T>A	.	.	.	92	13	60	0	.	91
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27455440	27455440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CAD	NM_004341	exon18	c.A2770G	p.T924A	.	.	164	82	151	0	.	295
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67691234	67691234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CAND1	NM_018448	exon5	c.T539C	p.L180P	.	.	112	51	114	0	.	516
CARM1	10498	ucsc.edu	37	19	11030600	11030600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CARM1	NM_199141	exon10	c.A1154G	p.H385R	.	.	15	2	60	0	.	90
CCDC151	115948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11545698	11545698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC151	NM_145045	exon1	c.C140A	p.A47E	.	.	31	22	79	0	.	91
CCDC30	728621	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	43110399	43110399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC30	NM_001080850	exon13	c.A1811T	p.Q604L	.	.	30	9	21	0	.	90
CCDC88B	283234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64111953	64111953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC88B	NM_032251	exon14	c.A1940G	p.E647G	.	.	58	22	89	0	.	94
CCDC92	80212	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124427315	124427315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC92	NM_025140	exon4	c.A199G	p.T67A	.	.	71	16	80	1	.	90
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74407156	74407156	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CD109	NM_133493	exon2	c.C108T	p.I36I	.	.	71	23	71	0	.	155
CDCP1	64866	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	45187699	45187699	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CDCP1	NM_178181	exon1	c.A81T	p.A27A	.	.	83	14	89	0	.	117
CDHR4	389118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49832413	49832413	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001007540	exon9	c.T1152A	p.P384P	.	.	139	34	121	0	.	.
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48689876	48689876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CELSR3	NM_001407	exon11	c.C5745A	p.C1915X	.	.	85	11	109	0	.	523
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49033896	49033896	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CEP152	NM_001194998	exon26	c.A3995T	p.E1332V	.	.	45	10	55	0	.	70
CEP350	9857	broad.mit.edu	37	1	180053260	180053260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CEP350	NM_014810	exon31	c.A6232G	p.R2078G	.	.	392	6	294	0	.	26
CES5A	221223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	55897346	55897346	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CES5A	NM_001190158	exon7	c.A811T	p.K271X	.	.	122	15	104	0	.	94
CFTR	1080	hgsc.bcm.edu;broad.mit.edu	37	7	117175426	117175426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CFTR	NM_000492	exon6	c.T704C	p.L235P	.	.	96	4	121	0	.	518
CHAT	1103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50873041	50873041	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHAT	NM_020549	exon15	c.A2196G	p.P732P	.	.	64	45	79	0	.	514
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	6206301	6206301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHD5	NM_015557	exon11	c.G1773A	p.W591X	.	.	73	15	57	0	.	719
CHERP	10523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16634007	16634007	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHERP	NM_006387	exon11	c.C1836T	p.F612F	.	.	45	27	74	0	.	92
CHMP5	51510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33271184	33271184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHMP5	NM_016410	exon5	c.A350G	p.K117R	.	.	49	25	57	0	.	91
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136700208	136700208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHRM2	NM_001006632	exon3	c.T596C	p.V199A	.	.	58	30	69	0	.	94
CHST7	56548	broad.mit.edu	37	X	46433441	46433441	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHST7	NM_019886	exon1	c.G75T	p.L25L	.	.	5	5	10	0	.	133
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143021573	143021573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLCN1	NM_000083	exon7	c.A841G	p.T281A	.	.	98	29	98	0	.	156
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45480646	45480646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLPTM1	NM_001294	exon5	c.A515G	p.K172R	.	.	58	11	49	0	.	91
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281142	140281142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLSTN2	NM_022131	exon13	c.C2204A	p.S735Y	.	.	35	20	33	0	.	157
CMIP	80790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81691394	81691394	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_198390	exon5	c.C654A	p.T218T	.	.	120	25	136	0	.	.
COX2	5743	broad.mit.edu	37	MT	7976	7976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	ENST00000361739	exon1	c.G391A	p.G131S	.	.	478	10	12	0	.	.
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43910820	43910820	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CRHR1	NM_001145146	exon11	c.C933A	p.I311I	.	.	79	19	92	0	.	522
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68107738	68107738	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CSPP1	NM_024790	exon29	c.C3576T	p.F1192F	.	.	174	89	163	0	.	138
CTDP1	9150	broad.mit.edu;mdanderson.org	37	18	77455996	77455996	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CTDP1	NM_004715	exon3	c.A418T	p.K140X	.	.	14	5	30	0	.	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	.	.	167	34	160	0	.	24361
CXCR2P1	3580	broad.mit.edu;ucsc.edu	37	2	218925041	218925041	+	RNA	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	33	15	29	0	.	.
CXorf30	645090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	36403105	36403105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CXorf30	NM_001098843	exon19	c.T1886C	p.L629S	.	.	166	138	239	0	.	62
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	83128470	83128470	+	Nonsense_Mutation	SNP	G	G	T	rs146830604	byfrequency;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYLC1	NM_021118	exon4	c.G754T	p.G252X	.	.	110	98	220	0	G|0.999;A|0.001	112
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99272195	99272195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP3A5	NM_001190484	exon3	c.T179G	p.F60C	.	.	42	22	69	0	.	90
CYP4A11	1579	broad.mit.edu	37	1	47395874	47395874	+	Missense_Mutation	SNP	A	A	C	rs45475502		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP4A11	NM_000778	exon12	c.T1473G	p.I491M	.	.	157	11	139	1	.	94
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15636153	15636153	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP4F22	NM_173483	exon3	c.G6A	p.L2L	.	.	28	7	34	0	.	92
CYTB	0	broad.mit.edu	37	MT	15500	15500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	ENST00000361789	exon1	c.G754A	p.D252N	.	.	430	58	16	0	.	.
DAOA	267012	broad.mit.edu	37	13	106118523	106118523	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DAOA	.	.	.	.	.	.	26	4	32	0	.	90
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30946867	30946867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DCDC5	NM_020869	exon4	c.A307G	p.R103G	.	.	48	25	74	0	.	23
DDI1	414301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103908140	103908140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DDI1	NM_001001711	exon1	c.G590T	p.R197M	.	.	51	5	100	0	.	137
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49391094	49391094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DDN	NM_015086	exon2	c.A1565T	p.Q522L	.	.	180	89	195	0	.	90
DDX12P	440081	bcgsc.ca	37	12	9589567	9589567	+	RNA	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	98	63	169	0	.	.
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	49937328	49937328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DEFB113	NM_001037729	exon1	c.T11G	p.L4R	.	.	89	8	52	0	.	90
DHX8	1659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41582013	41582013	+	Silent	SNP	G	G	A	rs145241921	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DHX8	NM_004941	exon12	c.G1548A	p.A516A	.	.	76	28	82	0	G|1.000;A|0.000	229
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61512777	61512777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DIDO1	NM_001193369	exon16	c.A4531G	p.M1511V	.	.	33	5	33	0	.	96
DIP2C	22982	hgsc.bcm.edu	37	10	329356	329356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DIP2C	NM_014974	exon35	c.G4150T	p.G1384C	.	.	82	4	128	0	.	156
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32481605	32481605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMD	NM_004006	exon25	c.A3383T	p.E1128V	.	.	46	20	59	0	.	265
DMRTB1	63948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53932266	53932266	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMRTB1	NM_033067	exon4	c.962-2A>T	.	.	.	233	112	209	0	.	92
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	118513717	118513717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMXL1	NM_005509	exon28	c.A6913T	p.N2305Y	.	.	89	15	102	0	.	92
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70190319	70190319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001080449	exon14	c.A2082G	p.I694M	.	.	85	23	111	0	.	.
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57394214	57394214	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNAH12	NM_178504	exon40	c.G6012T	p.L2004L	.	.	117	67	112	0	.	47
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76446801	76446801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNAH17	NM_173628	exon67	c.A10862T	p.E3621V	.	.	62	35	60	0	.	142
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83862023	83862023	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DOPEY1	NM_015018	exon30	c.A6066G	p.A2022A	.	.	109	36	124	0	.	155
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83862028	83862028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DOPEY1	NM_015018	exon30	c.A6071C	p.E2024A	.	.	108	37	124	0	.	155
DSE	29940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116757490	116757490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DSE	NM_001080976	exon6	c.A1859G	p.D620G	.	.	100	23	76	1	.	91
EFCC1	79825	hgsc.bcm.edu	37	3	128722685	128722685	+	Missense_Mutation	SNP	G	G	A	rs114656923	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_024768	exon2	c.G745A	p.G249R	.	.	7	6	0	0	G|0.951;A|0.049	.
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42949889	42949889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EFTUD2	NM_004247	exon11	c.G919A	p.V307I	.	.	116	49	112	0	.	91
EIF3A	8661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120819149	120819149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EIF3A	NM_003750	exon10	c.G1408A	p.A470T	.	.	256	63	281	0	.	226
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95236690	95236690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELL2	NM_012081	exon6	c.A836G	p.D279G	.	.	163	73	217	0	.	90
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48523032	48523032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELSPBP1	NM_022142	exon5	c.A412T	p.N138Y	.	.	148	28	129	0	.	90
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79411969	79411969	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELTD1	NM_022159	exon3	c.C315A	p.T105T	.	.	128	54	101	0	.	24
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	222301134	222301134	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHA4	NM_004438	exon13	c.A2331T	p.A777A	.	.	93	23	84	0	.	1441
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22895781	22895781	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHA8	NM_020526	exon2	c.95-1G>A	.	.	.	55	11	62	0	.	1380
EPHB3	2049	broad.mit.edu;bcgsc.ca	37	3	184298848	184298848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHB3	NM_004443	exon14	c.T2627G	p.V876G	.	.	75	6	96	1	.	1455
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72229893	72229893	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EYA1	NM_000503	exon7	c.T450A	p.G150G	.	.	58	23	55	0	.	652
FAM114A2	10827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153413430	153413430	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM114A2	NM_018691	exon4	c.A324G	p.S108S	.	.	151	41	166	0	.	90
FAM13B	51306	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137354837	137354837	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	77	33	95	0	.	.
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74411141	74411141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM161B	NM_152445	exon3	c.G1011C	p.Q337H	.	.	56	13	70	0	.	91
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45433642	45433642	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM179B	NM_015091	exon1	c.A2018T	p.Q673L	.	.	32	25	46	0	.	93
FAM196A	642938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	128973670	128973670	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM196A	NM_001039762	exon4	c.G990C	p.G330G	.	.	37	9	30	0	.	70
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	177250137	177250137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM5B	NM_021165	exon8	c.A1825C	p.S609R	.	.	84	13	65	0	.	28
FARP2	9855	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242380934	242380934	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FARP2	NM_014808	exon13	c.C1374A	p.A458A	.	.	77	41	83	1	.	93
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37541574	37541574	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXO10	NM_012166	exon2	c.A192G	p.P64P	.	.	127	36	132	0	.	637
FBXO3	26273	broad.mit.edu	37	11	33780086	33780086	+	Missense_Mutation	SNP	G	G	T	rs138866433	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXO3	NM_012175	exon4	c.C420A	p.D140E	.	.	73	4	73	0	G|1.000;A|0.000	227
FBXW10	10517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18653121	18653121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXW10	NM_001267585	exon3	c.G757A	p.D253N	.	.	344	15	315	0	.	91
FCGBP	8857	broad.mit.edu	37	19	40392441	40392441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FCGBP	NM_003890	exon16	c.G8063T	p.C2688F	.	.	256	8	317	0	.	98
FER1L5	90342	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	97335890	97335890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FER1L5	NM_001113382	exon17	c.A1382T	p.Y461F	.	.	134	35	125	0	.	23
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155507589	155507589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FGA	NM_000508	exon5	c.C992A	p.T331N	.	.	75	16	136	0	.	93
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123276887	123276887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FGFR2	NM_000141	exon8	c.G1030T	p.A344S	.	.	86	22	102	0	.	2607
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110081565	110081565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FIG4	NM_014845	exon11	c.A1250T	p.D417V	.	.	81	20	94	0	.	69
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	50514059	50514060	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FIGNL1	NM_022116	exon4	c.927_928insA	p.K309fs	.	.	113	28	148	0	.	93
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152326656	152326656	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLG2	NM_001014342	exon3	c.C3606A	p.S1202S	.	.	124	26	96	0	.	151
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63883947	63883947	+	Silent	SNP	C	C	A	rs139162750	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLRT1	NM_013280	exon2	c.C208A	p.R70R	.	.	26	18	53	0	C|1.000;T|0.000	90
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159650876	159650876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FNDC1	NM_032532	exon10	c.A1210C	p.K404Q	.	.	82	22	60	0	.	138
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4801902	4801902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FOXK1	NM_001037165	exon9	c.A2009T	p.K670M	.	.	129	37	124	0	.	516
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5643005	5643005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FSCN1	NM_003088	exon2	c.T950A	p.L317Q	.	.	62	10	70	0	.	91
FUT3	2525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5843806	5843806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FUT3	NM_001097640	exon3	c.A1045T	p.R349W	.	.	127	70	220	0	.	90
FUT9	10690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96651917	96651917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FUT9	NM_006581	exon3	c.A886T	p.S296C	.	.	56	8	51	0	.	95
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46967019	46967019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GABRA4	NM_000809	exon8	c.C1102T	p.Q368X	.	.	72	16	138	0	.	156
GALNT11	63917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151810421	151810421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GALNT11	NM_022087	exon8	c.G1171C	p.G391R	.	.	104	14	125	0	.	90
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	114535616	114535616	+	Missense_Mutation	SNP	T	T	A	rs200744856	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GAS6	NM_000820	exon9	c.A944T	p.Q315L	.	.	40	4	40	0	T|0.999;C|0.000	650
GBP1	2633	bcgsc.ca	37	1	89525903	89525903	+	Missense_Mutation	SNP	C	C	T	rs143075008		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GBP1	NM_002053	exon3	c.G295A	p.E99K	.	.	213	8	179	1	C|0.984;T|0.016	92
GCC1	79571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127222729	127222729	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GCC1	NM_024523	exon2	c.T1667A	p.L556Q	.	.	34	5	48	0	.	92
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120575521	120575521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GCN1L1	NM_006836	exon49	c.A6491G	p.E2164G	.	.	69	10	91	0	.	94
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61958465	61958465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GH2	NM_022557	exon3	c.A215C	p.Q72P	.	.	67	35	65	0	.	93
GIMAP8	155038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150164267	150164267	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GIMAP8	NM_175571	exon2	c.T481A	p.Y161N	.	.	85	21	65	1	.	95
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9739777	9739777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GLP2R	NM_004246	exon3	c.C367T	p.P123S	.	.	40	26	118	0	.	524
GOLGA7B	401647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99623744	99623744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GOLGA7B	NM_001010917	exon3	c.G196A	p.A66T	.	.	63	15	81	0	.	90
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46828555	46828555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR116	NM_015234	exon16	c.C2276T	p.A759V	.	.	78	37	91	0	.	91
GPR161	23432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168054803	168054803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR161	NM_001267609	exon7	c.A1616C	p.E539A	.	.	139	67	85	0	.	90
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27720703	27720703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR3	NM_005281	exon2	c.G401C	p.R134P	.	.	31	13	39	0	.	91
GSE1	23199	broad.mit.edu;mdanderson.org	37	16	85667714	85667714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_014615	exon2	c.G202A	p.A68T	.	.	19	5	21	0	.	.
GZMB	3002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	25101298	25101298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GZMB	NM_004131	exon4	c.A366T	p.R122S	.	.	55	16	55	0	.	514
HCN4	10021	mdanderson.org	37	15	73615775	73615775	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HCN4	NM_005477	exon8	c.T2659A	p.C887S	.	.	16	3	25	0	.	96
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63970246	63970246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC1	NM_003922	exon37	c.G6868T	p.D2290Y	.	.	70	28	83	0	.	666
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63986548	63986548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC1	NM_003922	exon29	c.A5443T	p.S1815C	.	.	65	13	119	0	.	666
HERC2P3	283755	broad.mit.edu;mdanderson.org	37	15	20644343	20644343	+	RNA	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC2P3	.	.	.	.	.	.	42	16	73	0	.	92
HIST1H3I	8354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27839739	27839739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HIST1H3I	NM_003533	exon1	c.A355C	p.T119P	.	.	101	39	111	0	.	91
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143090697	143090697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HIVEP2	NM_006734	exon5	c.T5179C	p.F1727L	.	.	70	52	55	0	.	95
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150676627	150676627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HORMAD1	NM_032132	exon12	c.915delA	p.K305fs	.	.	196	28	181	0	.	92
HOXA11	3207	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27224509	27224509	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HOXA11	NM_005523	exon1	c.G255T	p.A85A	.	.	73	37	96	0	.	1082
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35551262	35551262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HPN	NM_182983	exon8	c.A466T	p.R156W	.	.	21	4	25	0	.	515
HTR1B	3351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	78172967	78172967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HTR1B	NM_000863	exon1	c.C154A	p.L52M	.	.	149	95	162	0	.	90
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201196213	201196213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGFN1	NM_001164586	exon23	c.G10990T	p.D3664Y	.	.	225	72	171	0	.	71
IGLON5	402665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51830988	51830988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001101372	exon7	c.T770A	p.L257Q	.	.	19	5	24	0	.	.
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117142910	117142910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGSF3	NM_001542	exon8	c.C1742G	p.S581C	.	.	44	19	46	0	.	92
IGSF6	10261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21654919	21654919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGSF6	NM_005849	exon4	c.T535A	p.S179T	.	.	73	14	57	0	.	68
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18186614	18186614	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL12RB1	NM_153701	exon7	c.G645T	p.L215L	.	.	39	7	70	0	.	91
IL13RA2	3598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114244204	114244204	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL13RA2	NM_000640	exon7	c.T732C	p.L244L	.	.	74	25	145	0	.	132
IL36G	56300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113742493	113742493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL36G	NM_019618	exon5	c.G377T	p.R126M	.	.	189	43	117	0	.	91
IMPA1	3612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82572837	82572837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPA1	NM_001144878	exon9	c.A809G	p.Y270C	.	.	453	53	290	0	.	226
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100976471	100976471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPG2	NM_016247	exon10	c.G1055T	p.S352I	.	.	92	60	92	0	.	93
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	100948247	100948247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPG2	NM_016247	exon17	c.G3610T	p.E1204X	.	.	74	9	91	0	.	93
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71948760	71948760	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	INPPL1	NM_001567	exon26	c.C3472T	p.L1158L	.	.	59	25	105	0	.	660
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54783989	54783989	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_198510	exon8	c.C2518G	p.L840V	.	.	55	47	83	0	.	.
JAKMIP1	152789	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6058425	6058425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JAKMIP1	NM_001099433	exon12	c.A1706T	p.K569M	.	.	12	6	36	0	.	292
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147030071	147030071	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JAKMIP2	NM_001270941	exon4	c.C667T	p.L223L	.	.	138	51	163	0	.	154
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15501254	15501254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JARID2	NM_004973	exon8	c.A2062G	p.R688G	.	.	80	9	99	0	.	228
KAL1	3730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8503725	8503725	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KAL1	NM_000216	exon12	c.T1749A	p.T583T	.	.	92	37	170	0	.	134
KANK1	23189	broad.mit.edu	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KANK1	NM_001256876	exon10	c.G3105A	p.E1035E	.	.	69	4	117	0	.	517
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48967700	48967700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KCNJ14	NM_013348	exon3	c.A977C	p.D326A	.	.	101	11	96	0	.	91
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138642869	138642869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KCNT1	NM_020822	exon4	c.C416A	p.P139Q	.	.	27	10	38	0	.	137
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602745	10602745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KEAP1	NM_012289	exon3	c.C833T	p.P278L	.	.	36	17	78	0	.	637
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416517	6416517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KHSRP	NM_003685	exon14	c.T1472C	p.I491T	.	.	60	24	108	0	.	226
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123185451	123185451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KIAA1109	NM_015312	exon43	c.A7186C	p.N2396H	.	.	60	16	130	0	.	80
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99449345	99449345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_207362	exon4	c.G355T	p.D119Y	.	.	63	12	64	0	.	.
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245850812	245850812	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KIF26B	NM_018012	exon12	c.C4527A	p.V1509V	.	.	213	117	157	0	.	25
KNTC1	9735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123086099	123086099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KNTC1	NM_014708	exon45	c.A4580G	p.Y1527C	.	.	30	4	33	0	.	543
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53073703	53073703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT1	NM_006121	exon1	c.G430T	p.G144C	.	.	113	26	191	0	.	92
KRT19	3880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39684180	39684180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT19	NM_002276	exon1	c.A320G	p.E107G	.	.	93	18	85	0	.	90
KRT31	3881	hgsc.bcm.edu;mdanderson.org	37	17	39553767	39553767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT31	NM_002277	exon1	c.A25T	p.S9C	.	.	55	16	52	0	.	90
KRT71	112802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52938508	52938508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT71	NM_033448	exon9	c.T1380G	p.S460R	.	.	22	7	36	0	.	92
KRTAP4-3	85290	ucsc.edu;bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	99	19	68	1	A|0.046;T|0.954	22
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	40	11	72	0	T|0.717;C|0.283	91
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	130415451	130415451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	L3MBTL3	NM_032438	exon18	c.T1675C	p.S559P	.	.	79	10	70	0	.	96
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60890246	60890246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LAMA5	NM_005560	exon59	c.A7885G	p.I2629V	.	.	21	8	46	0	.	93
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49166551	49166551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LAMB2	NM_002292	exon13	c.C1633G	p.Q545E	.	.	53	26	45	0	.	93
LATS2	26524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21549409	21549409	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LATS2	NM_014572	exon8	c.A2867T	p.D956V	.	.	71	25	88	0	.	1404
LCE4A	199834	ucsc.edu	37	1	152681689	152681689	+	Silent	SNP	G	G	C	rs200223098		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LCE4A	NM_178356	exon1	c.G138C	p.G46G	.	.	314	73	186	0	G|0.999;C|0.001	90
LCN9	392399	broad.mit.edu	37	9	138556579	138556579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LCN9	NM_001001676	exon3	c.A245G	p.E82G	.	.	82	4	82	1	.	67
LENG9	94059	broad.mit.edu	37	19	54973552	54973552	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LENG9	NM_198988	exon1	c.G1224A	p.P408P	.	.	67	3	51	0	.	68
LEPRE1	64175	bcgsc.ca	37	1	43232755	43232755	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LEPRE1	.	.	.	.	.	.	18	11	18	0	.	94
LFNG	3955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2565185	2565185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LFNG	NM_001040167	exon4	c.T719A	p.V240D	.	.	39	13	46	0	.	636
LIPE	3991	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42906917	42906917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPE	NM_005357	exon9	c.G2809A	p.V937I	.	.	31	4	56	0	.	154
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15537598	15537598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPI	NM_198996	exon6	c.A910T	p.T304S	.	.	59	32	103	0	.	70
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15537634	15537634	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPI	NM_198996	exon6	c.A874C	p.I292L	.	.	61	38	103	0	.	70
LMX1B	4010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129458665	129458665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LMX1B	NM_001174146	exon8	c.C1156A	p.Q386K	.	.	108	35	114	0	.	90
LOC392232	0	bcgsc.ca	37	8	73139264	73139264	+	RNA	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	33	20	24	0	.	.
LPO	4025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56343575	56343575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LPO	NM_006151	exon11	c.1581delT	p.N527fs	.	.	82	27	92	0	.	91
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	141459798	141459798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRP1B	NM_018557	exon39	c.G6214T	p.G2072X	.	.	263	60	168	0	.	311
LRRC38	126755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	13839949	13839949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001010847	exon1	c.T140C	p.L47P	.	.	52	19	46	0	.	.
LRRC56	115399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	552109	552109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRC56	NM_198075	exon12	c.A1058T	p.Q353L	.	.	76	37	107	0	.	91
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	.	.	158	6	98	2	.	90
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101562141	101562141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRK1	NM_024652	exon14	c.C1831A	p.P611T	.	.	35	18	77	0	.	602
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	54952542	54952542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRTM1	NM_020678	exon3	c.A982G	p.T328A	.	.	141	38	145	0	.	90
MAGEC1	9947	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140996543	140996543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MAGEC1	NM_005462	exon4	c.T3353C	p.I1118T	.	.	23	20	52	1	.	133
MAN2A1	4124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109049407	109049407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MAN2A1	NM_002372	exon2	c.T322G	p.S108A	.	.	85	23	97	0	.	92
MARK4	57787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45783689	45783689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MARK4	NM_001199867	exon11	c.A1064T	p.Q355L	.	.	277	22	226	0	.	782
MARVELD2	153562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68715680	68715680	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MARVELD2	NM_001244734	exon2	c.G468A	p.R156R	.	.	105	39	106	0	.	22
MBD1	4152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47801768	47801768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MBD1	NM_001204137	exon9	c.G839A	p.R280H	.	.	22	14	33	0	.	228
MEF2A	4205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100214726	100214726	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEF2A	NM_005587	exon6	c.A525G	p.T175T	.	.	89	39	119	0	.	455
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3304779	3304779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEFV	NM_000243	exon2	c.C289G	p.Q97E	.	.	36	10	31	0	.	228
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42853717	42853717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEGF8	NM_001271938	exon14	c.G2365T	p.A789S	.	.	14	10	39	0	.	23
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8800721	8800721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MFAP5	NM_003480	exon10	c.A488G	p.E163G	.	.	85	70	166	0	.	577
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191362167	191362167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MFSD6	NM_017694	exon7	c.A1894G	p.K632E	.	.	63	14	40	0	.	92
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	109766714	109766714	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MICAL1	NM_022765	exon21	c.A2692T	p.K898X	.	.	67	26	47	0	.	154
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24410481	24410481	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MIPEP	NM_005932	exon14	c.G1551A	p.R517R	.	.	50	16	53	0	.	90
MIR643	693228	ucsc.edu;mdanderson.org	37	19	52785121	52785121	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	78	15	64	0	.	.
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	70008478	70008478	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MITF	NM_198159	exon9	c.A1068G	p.R356R	.	.	216	32	216	0	.	524
MLC1	23209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50506909	50506909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MLC1	NM_015166	exon10	c.A847C	p.I283L	.	.	50	34	114	0	.	91
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168352222	168352222	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MLLT4	NM_001040000	exon29	c.A4167T	p.P1389P	.	.	71	7	50	0	.	685
MMP27	64066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102573828	102573828	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MMP27	NM_022122	exon3	c.T363A	p.D121E	.	.	59	34	100	0	.	229
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56349142	56349142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MPO	NM_000250	exon11	c.G1904T	p.G635V	.	.	74	22	82	0	.	156
MRPS21	54460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150266814	150266814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MRPS21	NM_018997	exon1	c.A28T	p.R10W	.	.	309	27	196	0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9065588	9065588	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC16	NM_024690	exon3	c.T21858A	p.S7286S	.	.	21	11	51	0	.	566
MUC4	4585	broad.mit.edu	37	3	195510007	195510007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C8444A	p.T2815N	.	.	169	9	217	0	.	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195509863	195509863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C8588A	p.T2863N	.	.	168	12	197	0	.	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195507996	195507996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C10455A	p.H3485Q	.	.	133	15	160	0	.	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195515685	195515685	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C2766A	p.I922I	.	.	108	27	135	0	.	90
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240280	3240280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MXRA5	NM_015419	exon5	c.G3446T	p.R1149M	.	.	79	65	108	0	.	136
MXRA8	54587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1290242	1290242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MXRA8	NM_032348	exon5	c.C769A	p.L257M	.	.	118	49	111	0	.	90
MYH10	4628	broad.mit.edu;bcgsc.ca	37	17	8383601	8383604	+	Frame_Shift_Del	DEL	GCGC	GCGC	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	GCGC	GCGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MYH10	NM_001256012	exon40	c.5421_5424del	p.1807_1808del	.	.	7	4	49	0	.	92
MYH10	4628	broad.mit.edu;bcgsc.ca	37	17	8383607	8383624	+	In_Frame_Del	DEL	GGCTGCTAGCTCGGCGTT	GGCTGCTAGCTCGGCGTT	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	GGCTGCTAGCTCGGCGTT	GGCTGCTAGCTCGGCGTT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MYH10	NM_001256012	exon40	c.5401_5418del	p.1801_1806del	.	.	6	4	48	0	.	92
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201757764	201757764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NAV1	NM_020443	exon10	c.A3164G	p.D1055G	.	.	48	12	36	0	.	228
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78362415	78362415	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NAV3	NM_014903	exon5	c.C604A	p.R202R	.	.	213	87	194	0	.	279
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu	37	11	113102431	113102431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NCAM1	NM_001242607	exon12	c.T1232C	p.I411T	.	.	68	4	97	0	.	23
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71036125	71036125	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NCOA2	NM_006540	exon21	c.C4287T	p.P1429P	.	.	126	34	103	0	.	639
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152512686	152512686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NEB	NM_004543	exon49	c.T6476C	p.M2159T	.	.	108	20	95	0	.	145
NEDD1	121441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	97337446	97337446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NEDD1	NM_001135175	exon11	c.C1424A	p.S475Y	.	.	55	19	61	0	.	90
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29554603	29554603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NF1	NM_000267	exon20	c.A2388C	p.K796N	.	.	144	18	131	0	.	3353
NIPSNAP3B	55335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	107533137	107533137	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NIPSNAP3B	NM_018376	exon4	c.T438A	p.Y146X	.	.	88	31	74	0	.	92
NKD2	85409	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	1036382	1036382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NKD2	NM_001271082	exon9	c.A670T	p.T224S	.	.	54	25	67	1	.	226
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26089920	26089920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOS2	NM_000625	exon22	c.A2704T	p.I902F	.	.	58	24	60	0	.	156
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	32163815	32163815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOTCH4	NM_004557	exon30	c.C5411T	p.A1804V	.	.	21	13	9	0	.	1321
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776020	155776020	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOX3	NM_015718	exon3	c.C180T	p.C60C	.	.	98	32	74	0	.	91
NPS	594857	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	129350903	129350903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NPS	NM_001030013	exon3	c.A270T	p.X90C	.	.	76	16	89	1	.	22
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47289839	47289839	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NR1H3	NM_001251934	exon9	c.A1148C	p.Q383P	.	.	62	27	100	0	.	228
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	31498128	31498128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NRG1	NM_013962	exon1	c.G628A	p.E210K	.	.	68	34	78	0	.	525
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228550304	228550304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OBSCN	NM_001271223	exon91	c.A21560C	p.E7187A	.	.	278	103	194	0	.	403
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95148565	95148565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OGN	NM_033014	exon6	c.T644A	p.L215H	.	.	64	29	50	0	.	492
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	102269846	102269846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OLFM3	NM_058170	exon6	c.T1325A	p.V442E	.	.	86	33	67	0	.	93
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15917916	15917916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR10H1	NM_013940	exon1	c.A932C	p.Y311S	.	.	56	9	105	0	.	68
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29342442	29342442	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR12D3	NM_030959	exon1	c.623delC	p.A208fs	.	.	67	16	74	0	.	133
OR2B2	81697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27879561	27879561	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR2B2	NM_033057	exon1	c.T537C	p.C179C	.	.	76	28	75	0	.	68
OR2L5	81466	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	248186105	248186105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001258284	exon1	c.C856A	p.P286T	.	.	84	34	66	0	.	.
OR3A1	4994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3195335	3195335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR3A1	NM_002550	exon1	c.A542G	p.Y181C	.	.	79	62	169	0	.	70
OR4F6	390648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102346471	102346471	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR4F6	NM_001005326	exon1	c.A549G	p.R183R	.	.	74	34	80	0	.	69
OR52A1	23538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5172674	5172674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR52A1	NM_012375	exon1	c.T926C	p.M309T	.	.	58	19	92	0	.	114
OR5B17	219965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58126348	58126348	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR5B17	NM_001005489	exon1	c.T195C	p.S65S	.	.	27	10	85	0	.	71
OTUD7A	161725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	31776404	31776404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OTUD7A	NM_130901	exon11	c.T1874G	p.L625R	.	.	20	10	22	0	.	502
P4HA2	8974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131552947	131552947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	P4HA2	NM_001017974	exon4	c.C274T	p.R92W	.	.	49	18	73	0	.	68
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140432008	140432008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PCDHB1	NM_013340	exon1	c.A953G	p.D318G	.	.	89	22	129	0	.	90
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558117	140558117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PCDHB8	NM_019120	exon1	c.A502G	p.I168V	.	.	352	71	512	0	.	131
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178769916	178769916	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PDE11A	NM_001077197	exon5	c.322-2A>T	.	.	.	57	14	40	0	.	93
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114240970	114240970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PHTF1	NM_006608	exon17	c.A2182T	p.N728Y	.	.	70	18	67	0	.	91
PITPNM2	57605	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123471094	123471094	+	Silent	SNP	G	G	A	rs12811109	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PITPNM2	NM_020845	exon24	c.C3615T	p.H1205H	.	.	83	45	75	0	G|0.860;A|0.140	228
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47870917	47870917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PKD1L1	NM_138295	exon42	c.A6371G	p.Q2124R	.	.	96	36	121	0	.	145
PLA2G4D	283748	broad.mit.edu;mdanderson.org	37	15	42362276	42362276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLA2G4D	NM_178034	exon19	c.G2061T	p.E687D	.	.	16	4	23	0	.	136
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9364907	9364907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLCB4	NM_182797	exon12	c.T913A	p.F305I	.	.	81	23	80	0	.	274
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145001890	145001890	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLEC	NM_201380	exon27	c.C3855T	p.A1285A	.	.	59	11	48	0	.	141
PLIN3	10226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4844773	4844773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLIN3	NM_001164189	exon7	c.G867T	p.K289N	.	.	26	15	46	1	.	90
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	4511838	4511838	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLIN4	NM_001080400	exon3	c.A2092T	p.K698X	.	.	113	41	198	0	.	68
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48455150	48455150	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLXNB1	NM_001130082	exon23	c.A4464T	p.A1488A	.	.	74	14	75	0	.	293
POLR2I	5438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36604924	36604924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	POLR2I	NM_006233	exon5	c.G308A	p.R103Q	.	.	49	15	82	0	.	90
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63860613	63860613	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PPP2R5E	NM_006246	exon8	c.A774G	p.A258A	.	.	76	13	82	0	.	658
PPP6C	5537	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127920663	127920663	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PPP6C	NM_002721	exon5	c.238-2A>T	.	.	.	102	8	58	0	.	227
PRC1	9055	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	91522459	91522460	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRC1	NM_199413	exon8	c.1036_1037insT	p.E346_V347delinsX	.	.	42	10	79	0	.	92
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	14108238	14108238	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRDM2	NM_015866	exon8	c.A3948T	p.T1316T	.	.	83	38	79	0	.	116
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47296240	47296240	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PREX1	NM_020820	exon12	c.C1488T	p.Y496Y	.	.	86	32	82	0	.	231
PRICKLE4	29964	hgsc.bcm.edu	37	6	41754576	41754595	+	Frame_Shift_Del	DEL	CGCTGCTGCCGGCGGTTCCA	CGCTGCTGCCGGCGGTTCCA	-	rs76510495	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	CGCTGCTGCCGGCGGTTCCA	CGCTGCTGCCGGCGGTTCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRICKLE4	NM_013397	exon8	c.864_883del	p.288_295del	.	.	68	0	68	0	.	22
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	41754595	41754596	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRICKLE4	NM_013397	exon8	c.883_884insGC	p.S295fs	.	.	76	39	57	0	.	22
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40763061	40763061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRKAA1	NM_206907	exon10	c.A1544G	p.Y515C	.	.	101	27	117	0	.	792
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62612637	62612637	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRPF6	NM_012469	exon1	c.G39T	p.A13A	.	.	112	66	110	0	.	70
PRR12	57479	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50118152	50118152	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRR12	NM_020719	exon8	c.A4910T	p.D1637V	.	.	104	21	83	1	.	70
PRSS22	64063	broad.mit.edu;mdanderson.org	37	16	2903200	2903200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRSS22	NM_022119	exon6	c.C848A	p.S283Y	.	.	9	5	9	0	.	90
PSG2	5670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43576075	43576075	+	Silent	SNP	T	T	C	rs3198704	byfrequency;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PSG2	NM_031246	exon4	c.A741G	p.S247S	.	.	108	17	148	0	C|0.570;A|0.430	90
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97271990	97271990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTBP2	NM_021190	exon10	c.A1060G	p.S354G	.	.	65	23	59	0	.	90
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141889628	141889628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTK2	NM_005607	exon4	c.A370G	p.M124V	.	.	194	92	128	0	.	1517
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27293843	27293843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTK2B	NM_173174	exon20	c.A1319G	p.Y440C	.	.	90	12	129	0	.	1378
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214537999	214537999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPN14	NM_005401	exon18	c.G3291T	p.Q1097H	.	.	227	36	146	0	.	290
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2987988	2987988	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRA	NM_002836	exon15	c.830-2A>T	.	.	.	41	9	50	0	.	227
PTPRT	11122	hgsc.bcm.edu	37	20	41818289	41818289	+	Missense_Mutation	SNP	C	C	G	rs2867655	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRT	NM_007050	exon1	c.G85C	p.A29P	.	.	5	5	0	0	C|0.262;G|0.738	664
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653534	121653534	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRZ1	NM_002851	exon12	c.T4434A	p.S1478S	.	.	69	27	92	0	.	699
QRICH1	54870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49095208	49095208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	QRICH1	NM_198880	exon3	c.A425T	p.Q142L	.	.	75	18	76	0	.	91
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27822715	27822715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RAB18	NM_001256410	exon6	c.A398G	p.N133S	.	.	67	18	61	0	.	227
RACGAP1	29127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50388003	50388003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RACGAP1	NM_013277	exon14	c.C1250T	p.A417V	.	.	104	42	96	0	.	227
RASA3	22821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114766318	114766318	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RASA3	NM_007368	exon19	c.C1833A	p.T611T	.	.	85	37	124	0	.	658
RBM3	5935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48433627	48433627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RBM3	NM_006743	exon2	c.A59T	p.Q20L	.	.	30	13	57	0	.	131
RCAN2	10231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46424645	46424645	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RCAN2	NM_001251973	exon2	c.A69G	p.G23G	.	.	86	17	68	0	.	90
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167659345	167659345	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	RCSD1,NS,carcinoma,+2	RCSD1	NM_052862	exon4	c.T258A	p.I86I	.	.	114	39	98	0	.	517
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100058804	100058804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	REV1	NM_001037872	exon5	c.A478G	p.I160V	.	.	141	33	100	0	.	92
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111696479	111696479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	REV3L	NM_002912	exon13	c.G3079T	p.V1027F	.	.	52	12	45	0	.	294
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39313096	39313096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RFC1	NM_002913	exon12	c.A1457G	p.K486R	.	.	38	7	50	0	.	230
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73812676	73812676	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RLIM	NM_183353	exon5	c.A474G	p.P158P	.	.	52	43	105	0	.	228
RNASE10	338879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20979115	20979115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RNASE10	NM_001012975	exon1	c.A485T	p.K162M	.	.	66	9	108	0	.	90
RNF213	57674	broad.mit.edu;ucsc.edu	37	17	78313796	78313796	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RNF213	NM_001256071	exon26	c.T5629G	p.L1877V	.	.	18	7	13	0	.	577
RNR2	6053	broad.mit.edu	37	MT	2898	2898	+	RNA	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	423	16	14	0	.	.
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77666666	77666666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ROBO2	NM_002942	exon22	c.A3296G	p.Y1099C	.	.	63	44	64	0	.	328
RPAP3	79657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48064026	48064026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RPAP3	NM_024604	exon13	c.A1390T	p.N464Y	.	.	55	20	55	0	.	69
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83352788	83352788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RPS6KA6	NM_014496	exon19	c.G1845A	p.M615I	.	.	146	123	269	2	.	615
RRN3P2	653390	broad.mit.edu	37	16	29113341	29113341	+	RNA	SNP	T	T	C	rs71387644		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	172	4	201	1	T|0.500;C|0.500	.
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134986663	134986663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SAGE1	NM_018666	exon4	c.A248T	p.E83V	.	.	140	53	197	0	.	133
SARS2	54938	broad.mit.edu;mdanderson.org	37	19	39416927	39416927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SARS2	NM_001145901	exon2	c.A281C	p.Q94P	.	.	12	3	20	0	.	93
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71348683	71348683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SDK2	NM_001144952	exon41	c.A5687C	p.Y1896S	.	.	57	18	63	0	.	24
SEC14L5	9717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5050737	5050737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_014692	exon9	c.T1052A	p.L351Q	.	.	57	23	66	0	.	.
SEC31A	22872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83793196	83793196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SEC31A	NM_001077206	exon7	c.A683C	p.Q228P	.	.	108	41	212	0	.	268
SF3B4	10262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149898428	149898428	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SF3B4	NM_005850	exon3	c.C546T	p.S182S	.	.	135	25	89	0	.	91
SH2D3A	10045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6755179	6755180	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SH2D3A	NM_005490	exon5	c.644_645insC	p.R215fs	.	.	67	12	102	0	.	290
SH2D3C	10044	ucsc.edu;bcgsc.ca	37	9	130511552	130511552	+	Silent	SNP	G	G	A	rs2233503	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SH2D3C	NM_170600	exon5	c.C1077T	p.S359S	.	.	30	4	25	0	G|0.994;A|0.006	228
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	235951205	235951205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SH3BP4	NM_014521	exon4	c.G1792T	p.E598X	.	.	130	94	116	0	.	94
SHD	56961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4280338	4280338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SHD	NM_020209	exon1	c.T278A	p.L93Q	.	.	33	15	52	0	.	90
SIGLEC10	89790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51918290	51918290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC10	NM_033130	exon8	c.C1403A	p.A468D	.	.	54	7	35	0	.	91
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3674260	3674260	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC1	NM_023068	exon13	c.G3342T	p.P1114P	.	.	37	8	57	0	.	167
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630384	51630384	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC9	NM_001198558	exon4	c.T846A	p.P282P	.	.	80	19	64	0	.	91
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16973709	16973709	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIN3B	NM_015260	exon10	c.A1281C	p.T427T	.	.	41	13	94	0	.	228
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127484507	127484507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC12A2	NM_001046	exon12	c.A1943G	p.N648S	.	.	74	9	92	0	.	94
SLC25A24	29957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	108742645	108742645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC25A24	NM_013386	exon1	c.T116A	p.V39E	.	.	108	63	76	0	.	91
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150678223	150678223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC36A3	NM_181774	exon2	c.C150A	p.H50Q	.	.	73	15	94	0	.	93
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101631729	101631729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLCO4C1	NM_180991	exon1	c.C238G	p.L80V	.	.	99	29	147	0	.	93
SMAD5	4090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135496605	135496605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SMAD5	.	.	.	.	.	.	140	80	208	0	.	278
SMAP2	64744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40882562	40882562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SMAP2	NM_022733	exon9	c.A958G	p.M320V	.	.	276	40	213	0	.	68
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106924072	106924072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SORCS3	NM_014978	exon12	c.C1744G	p.P582A	.	.	46	6	44	0	.	99
SOWAHB	345079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	77818168	77818168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001029870	exon1	c.C835T	p.P279S	.	.	14	9	19	0	.	.
SPARC	6678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151045983	151045983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPARC	NM_003118	exon8	c.A673T	p.N225Y	.	.	88	46	98	0	.	514
SPAST	6683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32314626	32314626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPAST	NM_199436	exon3	c.A538G	p.K180E	.	.	103	26	81	0	.	153
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52943036	52943036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPATA18	NM_145263	exon7	c.A850T	p.R284W	.	.	129	67	264	0	.	72
SPICE1	152185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113187199	113187199	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPICE1	NM_144718	exon10	c.A942G	p.S314S	.	.	102	24	86	0	.	70
SPOCD1	90853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32265012	32265012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPOCD1	NM_144569	exon7	c.C1858A	p.L620I	.	.	238	110	191	0	.	158
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152944448	152944448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPRR4	NM_173080	exon2	c.C82T	p.Q28X	.	.	238	69	174	0	.	68
SREK1IP1	285672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	64023956	64023956	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SREK1IP1	NM_173829	exon4	c.A256T	p.K86X	.	.	203	51	236	0	.	23
ST3GAL3	6487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44395833	44395833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ST3GAL3	NM_001270463	exon8	c.A584G	p.K195R	.	.	61	15	57	0	.	93
STAC	6769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36484900	36484900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STAC	NM_003149	exon2	c.A156T	p.L52F	.	.	170	37	173	1	.	94
STK17A	9263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43647961	43647961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK17A	NM_004760	exon3	c.T526G	p.F176V	.	.	134	59	164	0	.	335
STK31	56164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23766879	23766879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK31	NM_031414	exon5	c.C269T	p.S90F	.	.	78	36	109	0	.	338
STK39	27347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169020389	169020389	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK39	NM_013233	exon4	c.T432A	p.G144G	.	.	91	16	83	0	.	546
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104389884	104389884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SUFU	NM_016169	exon12	c.A1427T	p.D476V	.	.	51	23	75	0	.	2246
SULT1B1	27284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70620914	70620914	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SULT1B1	NM_014465	exon2	c.C22T	p.L8L	.	.	74	38	125	0	.	90
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27017150	27017150	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SUPT6H	NM_003170	exon26	c.C3393T	p.S1131S	.	.	205	98	209	0	.	93
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152652650	152652650	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SYNE1	NM_182961	exon78	c.C13170T	p.I4390I	.	.	104	71	133	0	.	607
TAOK1	57551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27829620	27829620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TAOK1	NM_025142	exon13	c.A1217G	p.Y406C	.	.	91	13	88	0	.	521
TCF20	6942	ucsc.edu	37	22	42575687	42575687	+	Missense_Mutation	SNP	C	C	T	rs145699325		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TCF20	NM_181492	exon2	c.G5677A	p.A1893T	.	.	38	4	79	0	C|1.000;T|0.000	95
TEP1	7011	bcgsc.ca	37	14	20853237	20853237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TEP1	NM_007110	exon21	c.C3014A	p.T1005K	.	.	72	5	83	0	.	95
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56663388	56663388	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TEX14	NM_001201457	exon18	c.T2862A	p.P954P	.	.	73	32	70	0	.	810
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133935748	133935748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TG	NM_003235	exon22	c.G4694C	p.C1565S	.	.	89	24	67	0	.	145
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105914979	105914979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TGFBRAP1	NM_004257	exon3	c.A872C	p.Q291P	.	.	88	23	83	0	.	91
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83838969	83838969	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	THAP9	NM_024672	exon5	c.T1604A	p.L535Q	.	.	33	16	70	0	.	156
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	75431065	75431065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMC1	NM_138691	exon19	c.T1702G	p.Y568D	.	.	95	13	97	0	.	91
TMEM131	23505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98429012	98429012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM131	NM_015348	exon17	c.A1735G	p.I579V	.	.	246	52	191	0	.	74
TMEM168	64418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112412840	112412840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM168	NM_022484	exon4	c.A1542T	p.L514L	.	.	139	37	194	0	.	91
TMEM183B	653659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202987649	202987649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001079809	exon6	c.A749C	p.Q250P	.	.	302	124	250	0	.	.
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212558622	212558622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM206	NM_001198862	exon5	c.G672T	p.Q224H	.	.	313	50	225	0	.	153
TNFSF11	8600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	43174893	43174893	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TNFSF11	NM_003701	exon3	c.A393G	p.L131L	.	.	38	13	46	0	.	522
TNNC2	7125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44453043	44453043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TNNC2	NM_003279	exon4	c.A202C	p.S68R	.	.	33	20	40	0	.	91
TP53	7157	broad.mit.edu;bcgsc.ca	37	17	7576866	7576866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	TP53,NS,carcinoma,+1	TP53	NM_000546	exon9	c.980delA	p.Y327fs	.	.	15	8	82	0	.	70225
TP53	7157	broad.mit.edu;bcgsc.ca	37	17	7576868	7576897	+	In_Frame_Del	DEL	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TTCTCCATCCAGTGGTTTCTTCTTTGGCTG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	TP53,colon,carcinoma,-2	TP53	NM_000546	exon9	c.949_978del	p.317_326del	.	.	11	8	82	0	.	70225
TP53	7157	hgsc.bcm.edu	37	17	7576866	7576897	+	Frame_Shift_Del	DEL	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	TP53,NS,carcinoma,+1	TP53	NM_000546	exon9	c.949_980del	p.317_327del	.	.	15	0	82	0	.	70225
TPTE2	93492	ucsc.edu	37	13	20066994	20066994	+	Missense_Mutation	SNP	T	T	C	rs78472618	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TPTE2	NM_199254	exon4	c.A115G	p.K39E	.	.	42	9	54	3	T|0.985;C|0.015	92
TPTE2	93492	ucsc.edu	37	13	20067011	20067011	+	Missense_Mutation	SNP	A	A	C	rs76437836	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TPTE2	NM_199254	exon4	c.T98G	p.L33R	.	.	47	13	55	6	A|0.995;C|0.005	92
TRAPPC6A	79090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45668133	45668133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRAPPC6A	NM_024108	exon3	c.A290G	p.D97G	.	.	88	19	80	0	.	90
TRIM27	5987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	28876789	28876789	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRIM27	NM_006510	exon5	c.A847T	p.K283X	.	.	201	45	135	0	.	684
TRIM6-TRIM34	445372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5624771	5624771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRIM6-TRIM34	NM_001003819	exon2	c.A313G	p.I105V	.	.	31	15	68	0	.	45
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179642164	179642164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TTN	NM_001267550	exon26	c.T4628A	p.V1543E	.	.	52	34	48	0	.	636
UBP1	7342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33441756	33441756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	UBP1	NM_014517	exon11	c.A1105G	p.T369A	.	.	54	6	60	0	.	537
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19741841	19741841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ULK2	NM_001142610	exon10	c.A760G	p.R254G	.	.	172	84	180	0	.	334
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49149350	49149350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	USP19	NM_001199161	exon20	c.A2897T	p.Y966F	.	.	59	18	76	1	.	663
USP47	55031	broad.mit.edu	37	11	11906042	11906042	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	USP47	NM_017944	exon2	c.C68G	p.S23X	.	.	229	6	283	1	.	660
USP6NL	9712	broad.mit.edu	37	10	11504600	11504600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	USP6NL	NM_001080491	exon14	c.G2378A	p.G793D	.	.	67	4	84	0	.	628
VENTX	27287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135053333	135053333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VENTX	NM_014468	exon2	c.A395T	p.E132V	.	.	44	12	42	0	.	90
VSTM1	284415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54561741	54561741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VSTM1	NM_198481	exon3	c.T174A	p.F58L	.	.	133	17	122	0	.	90
VTN	7448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26695961	26695961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VTN	NM_000638	exon5	c.A758T	p.N253I	.	.	130	63	131	0	.	227
WBP4	11193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41656941	41656941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WBP4	NM_007187	exon10	c.C1022T	p.T341I	.	.	75	17	100	0	.	289
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85623579	85623579	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WDFY3	NM_014991	exon56	c.A8523C	p.A2841A	.	.	84	43	200	0	.	93
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105900629	105900629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WDR96	NM_025145	exon34	c.A4402T	p.I1468L	.	.	69	7	82	0	.	95
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6288867	6288867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	WFS1,brain,glioma,-2	WFS1	NM_001145853	exon3	c.A280T	p.R94W	.	.	32	16	108	0	.	91
WISP1	8840	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134225330	134225330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WISP1	NM_003882	exon2	c.G293T	p.G98V	.	.	224	35	168	1	.	610
YIPF1	54432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	54332055	54332055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	YIPF1	NM_018982	exon9	c.A649G	p.I217V	.	.	313	136	282	0	.	154
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	112849665	112849665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	YTHDC2	NM_022828	exon1	c.T73C	p.C25R	.	.	70	21	86	0	.	92
ZBTB8B	728116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32950917	32950917	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001145720	exon4	c.A1386C	p.P462P	.	.	148	34	107	0	.	.
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	110033998	110033998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZC3H12C	NM_033390	exon5	c.G1149T	p.K383N	.	.	56	26	93	0	.	68
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72993128	72993128	+	Missense_Mutation	SNP	C	C	T	rs142256050	byfrequency	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZFHX3	NM_006885	exon2	c.G917A	p.R306Q	.	.	153	35	181	0	C|0.999;T|0.001	72
ZFP41	286128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144332183	144332183	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZFP41	NM_173832	exon2	c.A170T	p.E57V	.	.	97	7	79	0	.	91
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22157397	22157397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF208	NM_007153	exon4	c.C439A	p.R147S	.	.	50	16	93	0	.	7
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64388967	64388967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF273	NM_021148	exon4	c.A1261G	p.K421E	.	.	148	22	143	0	.	90
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28963167	28963167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF311	NM_001010877	exon7	c.G1612T	p.G538W	.	.	87	8	121	0	.	22
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130957	45130957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF334	NM_018102	exon5	c.A1021T	p.R341W	.	.	49	16	70	0	.	92
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53645692	53645692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF347	NM_001172675	exon5	c.C392A	p.S131Y	.	.	85	10	71	0	.	90
ZNF408	79797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46724704	46724704	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF408	NM_024741	exon4	c.A563T	p.E188V	.	.	39	12	87	1	.	90
ZNF518A	9849	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	97916998	97916998	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF518A	.	.	.	.	.	.	92	51	125	1	.	23
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53013987	53013987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001099694	exon6	c.A353G	p.Q118R	.	.	191	58	175	0	.	.
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207649619	207649620	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	p.N920H	.	.	.	.	.	.	.	
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152284916	152284917	+	Missense_Mutation	DNP	CT	CT	GA	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	p.V816L	.	.	.	.	.	.	.	
GTF2IP2	338448	bcgsc.ca	37	21	14823972	14823973	+	RNA	DNP	CC	CC	AA	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	.	.	.	.	.	.	.	.	
OTOP1	133060	ucsc.edu	37	4	4190576	4190577	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	.	.	.	p.R598A	.	.	.	.	.	.	.	
