Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	ucsc.edu;mdanderson.org	37	19	58864479	58864479	+	Missense_Mutation	SNP	C	C	A	rs893184	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	A1BG	NM_130786	exon3	c.A155T	p.H52L	.	.	47	19	69	0	C|0.873;T|0.127	90
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8988264	8988264	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	A2ML1	NM_144670	exon6	c.643+2T>C	.	.	.	80	32	133	0	.	93
AAR2	25980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34832689	34832689	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_001271874	exon3	c.G828T	p.R276R	.	.	189	129	137	0	.	.
ACTR1B	10120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98275016	98275016	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ACTR1B	NM_005735	exon6	c.T531G	p.P177P	.	.	69	33	96	0	.	91
ADORA3	140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112031572	112031572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ADORA3	NM_020683	exon3	c.G532T	p.A178S	.	.	280	128	237	0	.	156
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100356775	100356775	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AGL	NM_000642	exon22	c.2813-1G>T	.	.	.	80	37	62	0	.	92
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100356784	100356784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AGL	NM_000644	exon22	c.T2821G	p.S941A	.	.	86	41	70	0	.	92
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49962955	49962955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ALDH16A1	NM_001145396	exon4	c.C349T	p.R117W	.	.	65	27	90	0	.	91
AMFR	267	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	56396835	56396835	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	AMFR	NM_001144	exon14	c.C1918T	p.Q640X	.	.	34	5	55	0	.	1009
ANKEF1	63926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	10030419	10030424	+	In_Frame_Del	DEL	ATTTAA	ATTTAA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	ATTTAA	ATTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_198798	exon6	c.1202_1207del	p.401_403del	.	.	82	27	127	0	.	.
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	RNA	SNP	A	A	G	rs199695856		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	112	8	111	0	.	.
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	126	7	130	0	.	.
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57271521	57271521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	APPL1	NM_012096	exon3	c.A155G	p.N52S	.	.	469	149	548	0	.	153
ARSF	416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3019189	3019189	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ARSF	NM_004042	exon8	c.A1029G	p.T343T	.	.	131	110	276	0	.	132
BDP1	55814	broad.mit.edu	37	5	70766272	70766272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	BDP1	NM_018429	exon7	c.A970G	p.M324V	.	.	483	6	404	0	.	92
C14orf180	400258	broad.mit.edu	37	14	105054985	105054985	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C14orf180	NM_001008404	exon5	c.G348A	p.L116L	.	.	5	4	8	0	.	492
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23456717	23456717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C14orf93	NM_021944	exon7	c.G1324A	p.A442T	.	.	72	49	62	0	.	91
C16orf54	283897	broad.mit.edu	37	16	29755793	29755793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_175900	exon2	c.G480C	p.R160S	.	.	50	12	53	8	.	.
C17orf96	100170841	broad.mit.edu	37	17	36829683	36829683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_001130677	exon1	c.T1066G	p.W356G	.	.	65	16	42	12	.	.
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	763554	763554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C19orf21	NM_173481	exon5	c.G2004T	p.W668C	.	.	26	12	43	0	.	91
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112732231	112732231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C3orf17	NM_015412	exon4	c.A361G	p.T121A	.	.	541	335	544	0	.	90
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	121434235	121434235	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	C6orf170	NM_152730	exon28	c.C3142T	p.Q1048X	.	.	89	79	183	0	.	92
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701871	181701871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CACNA1E	NM_001205293	exon20	c.G2649T	p.W883C	.	.	231	132	159	0	.	95
CCDC83	220047	bcgsc.ca	37	11	85593705	85593705	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CCDC83	NM_173556	exon4	c.A330G	p.E110E	.	.	46	4	72	0	.	91
CES1	1066	hgsc.bcm.edu	37	16	55862715	55862715	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CES1	NM_001025195	exon2	c.G224A	p.W75X	.	.	131	12	153	0	.	68
CES2	8824	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	66976621	66976621	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CES2	NM_003869	exon10	c.G1545A	p.P515P	.	.	99	31	76	0	.	90
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40049157	40049157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CHD6	NM_032221	exon31	c.C6118T	p.H2040Y	.	.	39	8	36	0	.	238
CKM	1158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45810804	45810804	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CKM	NM_001824	exon7	c.C882A	p.G294G	.	.	42	16	65	0	.	91
CRISPLD2	83716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84884214	84884214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CRISPLD2	NM_031476	exon5	c.A533G	p.N178S	.	.	85	20	96	0	.	90
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23584366	23584366	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CST9	NM_001008693	exon2	c.A261T	p.R87R	.	.	33	16	41	0	.	91
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126714944	126714944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CTBP2	NM_022802	exon1	c.C1385T	p.A462V	.	.	58	36	67	0	.	90
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67650677	67650677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CTCF	NM_006565	exon5	c.G982T	p.D328Y	.	.	134	36	112	0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	.	.	164	41	188	0	.	24361
CYLC1	1538	broad.mit.edu	37	X	83129489	83129489	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	CYLC1	NM_021118	exon4	c.A1773G	p.K591K	.	.	118	3	224	0	.	112
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15380	15380	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	ENST00000361789	exon1	c.A634C	p.T212P	.	.	26	26	10	0	.	.
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	72049330	72049330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DACH1	NM_080759	exon10	c.C2032A	p.P678T	.	.	59	26	103	0	.	135
DCUN1D4	23142	broad.mit.edu	37	4	52777312	52777312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DCUN1D4	NM_001040402	exon9	c.T692C	p.L231P	.	.	60	4	75	1	.	92
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107845304	107845304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DKK2	NM_014421	exon4	c.C587T	p.A196V	.	.	127	55	206	0	.	661
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124335940	124335940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DMBT1	NM_007329	exon7	c.G309T	p.R103S	.	.	37	13	30	0	.	494
DNAJC17	55192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41060161	41060161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNAJC17	NM_018163	exon11	c.G892A	p.D298N	.	.	21	16	14	0	.	226
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25467523	25467523	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNMT3A	NM_153759	exon11	c.988-2A>G	.	.	.	35	21	62	0	.	1924
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25467466	25467466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DNMT3A	NM_175629	exon14	c.G1610T	p.C537F	.	.	56	24	73	0	.	1924
DPCR1	135656	broad.mit.edu	37	6	30918208	30918208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DPCR1	NM_080870	exon2	c.T1967C	p.F656S	.	.	128	7	93	2	.	90
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74751076	74751076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DQX1	NM_133637	exon4	c.G790A	p.V264M	.	.	68	26	102	0	.	92
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95705439	95705439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DYNC1I1	NM_004411	exon15	c.A1631G	p.H544R	.	.	89	66	101	0	.	94
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38865317	38865317	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	DYRK1A	NM_101395	exon9	c.952-2A>T	.	.	.	62	31	68	0	.	792
EIF3H	8667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	117658834	117658834	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EIF3H	NM_003756	exon7	c.G837A	p.Q279Q	.	.	50	20	60	0	.	658
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201982370	201982370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ELF3	NM_001114309	exon7	c.C749G	p.P250R	.	.	258	161	185	0	.	226
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79472325	79472325	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ELTD1	NM_022159	exon1	c.G15T	p.P5P	.	.	178	81	138	0	.	24
EP400	57634	bcgsc.ca	37	12	132547138	132547138	+	Silent	SNP	A	A	G	rs111782215	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EP400	NM_015409	exon47	c.A8226G	p.Q2742Q	.	.	93	8	123	1	A|0.995;G|0.005	520
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242048690	242048690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EXO1	NM_130398	exon15	c.A2286C	p.R762S	.	.	133	62	87	0	.	661
EXOSC3	51010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37783971	37783971	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	EXOSC3	NM_016042	exon2	c.A414G	p.P138P	.	.	41	17	82	0	.	135
F13B	2165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197032133	197032133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	F13B	NM_001994	exon2	c.A119G	p.Y40C	.	.	227	121	133	0	.	92
FAM184B	27146	ucsc.edu	37	4	17660125	17660125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FAM184B	NM_015688	exon10	c.G1885A	p.A629T	.	.	24	4	34	0	.	23
FAM205B	389715	broad.mit.edu	37	9	34835532	34835532	+	RNA	SNP	A	A	G	rs2988118	by2hit2allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	24	4	36	1	A|1.000;|0.000	.
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48888574	48888574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FBN1	NM_000138	exon6	c.T444C	p.P148P	.	.	55	11	63	0	.	92
FCGBP	8857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40433334	40433334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FCGBP	NM_003890	exon2	c.G935T	p.G312V	.	.	18	7	45	0	.	98
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024770	76024770	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	FILIP1	NM_015687	exon5	c.C778T	p.Q260X	.	.	47	42	80	0	.	94
GALNT8	26290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	4848403	4848403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GALNT8	NM_017417	exon3	c.C584G	p.S195C	.	.	75	37	112	0	.	230
GGT3P	2679	broad.mit.edu	37	22	18778609	18778609	+	RNA	SNP	C	C	T	rs499895	bysubmitter;by2hit2allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	856	8	1104	1	C|1.000;|0.000	.
GLG1	2734	bcgsc.ca	37	16	74566050	74566050	+	Missense_Mutation	SNP	G	G	A	rs201232267		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GLG1	NM_001145667	exon2	c.C440T	p.P147L	.	.	332	28	386	5	.	136
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49759578	49759578	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GMPPB	NM_021971	exon8	c.C771T	p.D257D	.	.	69	25	76	0	.	90
GNAT3	346562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80123960	80123960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GNAT3	NM_001102386	exon2	c.C122T	p.A41V	.	.	316	103	296	0	.	23
GPR113	165082	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26534302	26534302	+	Missense_Mutation	SNP	G	G	A	rs116030611	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GPR113	NM_001145168	exon11	c.C2294T	p.P765L	.	.	49	20	58	0	G|0.989;A|0.011	94
GPX5	2880	broad.mit.edu;bcgsc.ca	37	6	28497290	28497290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GPX5	NM_001509	exon2	c.G150C	p.K50N	.	.	225	8	111	1	.	91
GREB1	9687	broad.mit.edu	37	2	11751050	11751050	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GREB1	NM_014668	exon18	c.C2903G	p.A968G	.	.	126	7	165	6	.	91
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	9934503	9934503	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GRIN2A	NM_001134407	exon8	c.1651+1G>T	.	.	.	137	41	138	0	.	349
GUCY1A2	2977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	106810594	106810594	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	GUCY1A2	NM_000855	exon4	c.G798T	p.V266V	.	.	71	50	88	0	.	589
HLA-A	3105	bcgsc.ca	37	6	29910581	29910581	+	Missense_Mutation	SNP	C	C	A	rs1059423	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HLA-A	NM_001242758	exon2	c.C121A	p.R41S	.	.	130	26	62	2	A|0.079;C|0.921	92
HLA-A	3105	bcgsc.ca	37	6	29910583	29910583	+	Silent	SNP	C	C	T	rs1059426	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HLA-A	NM_001242758	exon2	c.C123T	p.R41R	.	.	132	26	63	2	C|0.923;T|0.077	92
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29797329	29797329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HLA-G	NM_002127	exon5	c.G754T	p.V252L	.	.	172	44	81	0	.	517
HNRNPK	3190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86585154	86585154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HNRNPK	NM_031262	exon16	c.A1284C	p.E428D	.	.	46	18	52	1	.	227
HOXC6	3223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54423561	54423561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HOXC6	NM_004503	exon2	c.G523T	p.A175S	.	.	50	25	86	0	.	93
HTRA2	27429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74757927	74757927	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	HTRA2	NM_013247	exon2	c.A690G	p.A230A	.	.	49	25	64	0	.	91
IFNA14	3448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21239412	21239412	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	IFNA14	NM_002172	exon1	c.523delC	p.L175fs	.	.	130	45	159	0	.	68
IL23R	149233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67724414	67724414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	IL23R	NM_144701	exon11	c.T1493G	p.L498R	.	.	169	79	257	0	.	90
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182323028	182323028	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ITGA4	NM_000885	exon2	c.C303T	p.C101C	.	.	117	44	140	0	.	230
KCNIP2	30819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	103589645	103589645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KCNIP2	NM_014591	exon3	c.C224A	p.A75D	.	.	28	13	39	0	.	90
KHDC3L	154288	ucsc.edu;bcgsc.ca	37	6	74073354	74073354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	C6orf221,shoulder,malignant_melanoma,+1	.	NM_001017361	exon3	c.A425G	p.E142G	.	.	29	4	42	1	.	.
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57971812	57971812	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KIF5A	NM_004984	exon22	c.C2382A	p.L794L	.	.	57	22	83	2	.	517
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43039049	43039049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KLC4	NM_201523	exon9	c.G1246T	p.A416S	.	.	186	123	107	0	.	94
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KRT4	NM_002272	exon1	c.T240C	p.F80F	.	.	51	20	45	0	A|1.000;|0.000	96
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KRT4	NM_002272	exon1	c.C237T	p.G79G	.	.	46	14	47	0	.	96
KRTAP4-3	85290	bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	218	71	70	2	A|0.046;T|0.954	22
KRTAP4-7	100132476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39240735	39240735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_033061	exon1	c.A277C	p.S93R	.	.	40	34	21	0	.	.
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130374111	130374111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	L3MBTL3	NM_032438	exon7	c.A557C	p.D186A	.	.	72	61	81	0	.	96
LDHAL6A	160287	ucsc.edu	37	11	18478240	18478240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LDHAL6A	NM_144972	exon1	c.A13G	p.K5E	.	.	43	4	64	0	.	90
LOC100129138	0	bcgsc.ca	37	1	104615978	104615978	+	RNA	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	152	64	99	0	.	.
LOC644649	0	bcgsc.ca	37	16	59788766	59788766	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	65	20	65	0	.	.
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	59284530	59284539	+	Frame_Shift_Del	DEL	AAACTCTTTC	AAACTCTTTC	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	AAACTCTTTC	AAACTCTTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRIG3	NM_153377	exon4	c.423_432del	p.141_144del	.	.	49	12	86	0	.	229
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105511591	105511591	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRP12	NM_013437	exon4	c.G429T	p.S143S	.	.	147	41	96	0	.	90
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141665624	141665624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	LRP1B	NM_018557	exon22	c.G3342T	p.W1114C	.	.	183	96	151	0	.	311
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889234	23889234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_019066	exon1	c.C3656T	p.A1219V	.	.	67	35	81	0	.	.
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168806927	168806927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MECOM	NM_004991	exon16	c.A3446G	p.H1149R	.	.	123	74	111	0	.	853
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126774132	126774132	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MEGF10	NM_032446	exon18	c.A2106C	p.P702P	.	.	95	28	76	0	.	94
MICAL2	9645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12183718	12183718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MICAL2	NM_014632	exon3	c.G16T	p.D6Y	.	.	84	61	92	1	.	92
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45693923	45693923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	MIS18BP1	NM_018353	exon11	c.A1867G	p.I623V	.	.	63	15	66	0	.	90
MKRN9P	400058	bcgsc.ca	37	12	88177599	88177599	+	RNA	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	36	12	39	0	.	.
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201752875	201752875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NAV1	NM_020443	exon7	c.G2699A	p.S900N	.	.	111	34	57	0	.	228
NCEH1	57552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172351796	172351796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NCEH1	NM_001146276	exon5	c.A816G	p.P272P	.	.	134	42	121	0	.	90
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35871694	35871694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NFKBIA	NM_020529	exon5	c.A812T	p.Q271L	.	.	91	35	106	0	.	721
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56372857	56372857	+	Silent	SNP	C	C	A	rs200258143	alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NLRP4	NM_134444	exon4	c.C1962A	p.T654T	.	.	43	20	85	0	C|0.999;G|0.000	216
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44573141	44573141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPC1L1	NM_001101648	exon8	c.G2298A	p.M766I	.	.	190	112	188	0	.	94
NPFFR1	64106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72015502	72015502	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPFFR1	NM_022146	exon4	c.G504T	p.L168L	.	.	97	32	105	0	.	22
NPPB	4879	bcgsc.ca	37	1	11917715	11917715	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NPPB	NM_002521	exon3	c.T402C	p.H134H	.	.	55	4	96	0	.	92
NR4A3	8013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	102595735	102595735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	NR4A3	NM_173200	exon6	c.G1286C	p.R429T	.	.	108	48	123	0	.	186
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15918704	15918704	+	Silent	SNP	G	G	A	rs61729383	byfrequency	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR10H1	NM_013940	exon1	c.C144T	p.T48T	.	.	63	23	138	0	G|0.810;A|0.190	68
OR1E2	8388	broad.mit.edu	37	17	3336194	3336194	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR1E2	NM_003554	exon1	c.T942A	p.I314I	.	.	49	4	138	0	.	131
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248458206	248458206	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	OR2T12	NM_001004692	exon1	c.C675T	p.L225L	.	.	497	188	322	0	.	71
PAPD7	11044	broad.mit.edu	37	5	6749708	6749708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PAPD7	NM_001171805	exon9	c.T875C	p.I292T	.	.	79	4	49	0	.	69
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724307	30724307	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCDH7	NM_032457	exon1	c.G1263T	p.G421G	.	.	150	57	189	0	.	229
PCDHB19P	84054	ucsc.edu	37	5	140621079	140621079	+	RNA	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	.	.	.	42	4	28	0	.	.
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798888	140798888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCDHGB7	NM_018927	exon1	c.T1462G	p.S488A	.	.	111	50	86	0	.	29
PCGF6	84108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105104793	105104793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PCGF6	NM_001011663	exon6	c.T770C	p.L257P	.	.	142	44	171	0	.	226
PDCD2L	84306	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	34895344	34895344	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDCD2L	NM_032346	exon1	c.C9G	p.A3A	.	.	20	7	39	0	.	91
PDE3A	5139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20807109	20807109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDE3A	NM_000921	exon15	c.G3154A	p.E1052K	.	.	95	43	149	1	.	94
PDHA2	5161	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762058	96762058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PDHA2	NM_005390	exon1	c.G757A	p.D253N	.	.	39	21	69	1	.	90
POLR1A	25885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86265979	86265979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	POLR1A	NM_015425	exon27	c.T3878G	p.V1293G	.	.	55	24	92	2	.	93
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22277762	22277762	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PPM1F	NM_014634	exon8	c.G1068A	p.L356L	.	.	139	52	106	0	.	292
PRF1	5551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72360312	72360312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRF1	NM_001083116	exon2	c.C347A	p.A116D	.	.	65	20	88	0	.	578
PRKCSH	5589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11553327	11553327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRKCSH	NM_001001329	exon7	c.G595A	p.E199K	.	.	40	16	66	0	.	90
PRRX1	5396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170633465	170633465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PRRX1	NM_006902	exon1	c.G106T	p.V36F	.	.	356	209	259	0	.	659
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23410846	23410846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTCHD1	NM_173495	exon3	c.G1211A	p.C404Y	.	.	45	40	69	0	.	135
PTN	5764	broad.mit.edu;ucsc.edu	37	7	136936111	136936111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTN	NM_002825	exon4	c.G317A	p.W106X	.	.	123	39	142	1	.	516
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47449186	47449186	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	PTPN23	NM_015466	exon13	c.1004-1G>T	.	.	.	91	54	91	0	.	227
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122251638	122251638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	QRFPR	NM_198179	exon5	c.G838T	p.A280S	.	.	64	27	119	0	.	90
RAD52	5893	ucsc.edu	37	12	1042166	1042166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RAD52	NM_134424	exon2	c.G59A	p.G20D	.	.	42	4	64	0	.	227
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95399347	95399347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RAD54B	NM_012415	exon11	c.A1850G	p.K617R	.	.	92	54	55	0	.	539
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116268749	116268749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	RGS3	NM_144488	exon13	c.G1061A	p.C354Y	.	.	176	64	307	0	.	227
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134988645	134988645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SAGE1	NM_018666	exon7	c.C671G	p.T224S	.	.	96	89	134	0	.	133
SARS2	54938	ucsc.edu	37	19	39421292	39421292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SARS2	NM_001145901	exon1	c.A85G	p.S29G	.	.	42	4	47	0	.	93
SBNO2	22904	bcgsc.ca	37	19	1112823	1112823	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_014963	exon20	c.C2373T	p.G791G	.	.	31	4	50	0	.	.
SCNN1G	6340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23226546	23226546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SCNN1G	NM_001039	exon13	c.C1706A	p.A569D	.	.	64	43	53	0	.	158
SEMA3B	7869	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	50313044	50313044	+	RNA	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SEMA3B	.	.	.	.	.	.	159	43	189	0	.	840
SH3RF1	57630	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170077719	170077719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SH3RF1	NM_020870	exon3	c.G505A	p.E169K	.	.	93	36	140	1	.	567
SHANK2	22941	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70666634	70666634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SHANK2	.	.	.	.	.	.	45	15	62	0	.	94
SIGLEC9	27180	broad.mit.edu	37	19	51631743	51631743	+	Missense_Mutation	SNP	C	C	A	rs144700400	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SIGLEC9	NM_001198558	exon6	c.C1179A	p.N393K	.	.	36	3	89	1	C|0.996;T|0.004	91
SMAD9	4093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37446983	37446983	+	Missense_Mutation	SNP	C	C	A	rs200651392	alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SMAD9	NM_005905	exon3	c.G482T	p.R161L	.	.	65	22	89	0	C|0.999;T|0.001	414
SPTBN4	57731	bcgsc.ca	37	19	41075583	41075583	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	SPTBN4	NM_020971	exon32	c.T6977A	p.I2326N	.	.	24	4	36	0	.	94
SVOP	55530	ucsc.edu	37	12	109327973	109327973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_018711	exon10	c.G887A	p.G296D	.	.	42	4	73	0	.	.
TANC2	26115	broad.mit.edu	37	17	61315208	61315208	+	Missense_Mutation	SNP	G	G	A	rs144412511		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TANC2	NM_025185	exon6	c.G581A	p.R194H	.	.	146	4	78	0	G|0.999;A|0.000	24
TBL1Y	90665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	6939610	6939610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_134258	exon10	c.A742C	p.T248P	.	.	38	34	94	0	.	.
TCF3	6929	ucsc.edu	37	19	1623994	1623994	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TCF3	NM_003200	exon8	c.C505T	p.Q169X	.	.	42	4	50	0	.	721
TIMM50	92609	ucsc.edu;bcgsc.ca	37	19	39972655	39972655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TIMM50	NM_001001563	exon2	c.A550G	p.S184G	.	.	37	5	44	0	.	91
TMC3	342125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	81637267	81637267	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMC3	NM_001080532	exon13	c.G1358C	p.W453S	.	.	148	13	155	0	.	70
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19049311	19049311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMC7	NM_024847	exon8	c.G1121A	p.G374E	.	.	80	26	108	0	.	93
TMPRSS11E	28983	broad.mit.edu	37	4	69342131	69342131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TMPRSS11E	NM_014058	exon7	c.G682A	p.V228M	.	.	312	7	485	0	.	70
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92472209	92472209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TRIP11	NM_004239	exon11	c.C2111A	p.S704Y	.	.	114	40	131	0	.	1400
TRIP4	9325	hgsc.bcm.edu;bcgsc.ca	37	15	64686298	64686298	+	Missense_Mutation	SNP	G	G	T	rs115051562	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TRIP4	NM_016213	exon2	c.G255T	p.Q85H	.	.	155	8	180	0	G|0.986;A|0.014	188
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179496878	179496878	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TTN	NM_001267550	exon236	c.G43743A	p.V14581V	.	.	59	32	64	0	.	636
TUBB	203068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30691141	30691162	+	Frame_Shift_Del	DEL	GGGCCAAAGGCCACTACACAGA	GGGCCAAAGGCCACTACACAGA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	GGGCCAAAGGCCACTACACAGA	GGGCCAAAGGCCACTACACAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TUBB	NM_178014	exon4	c.302_323del	p.101_108del	.	.	295	38	192	0	.	91
TULP4	56995	mdanderson.org	37	6	158923712	158923712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	TULP4	NM_020245	exon13	c.G3017T	p.R1006L	.	.	8	2	12	0	.	91
UBOX5	22888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3102887	3102887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	UBOX5	NM_014948	exon3	c.A398G	p.H133R	.	.	47	25	92	1	.	227
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216173882	216173882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	USH2A	NM_206933	exon33	c.C6348G	p.H2116Q	.	.	119	39	87	0	.	115
USP17L1P	401447	mdanderson.org	37	8	7191295	7191295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_001256873	exon1	c.G1387T	p.A463S	.	.	27	25	71	1	.	.
UST	10090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	149285691	149285691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	UST	NM_005715	exon5	c.C673A	p.R225S	.	.	56	50	76	0	.	92
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22149725	22149725	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	VWA3A	NM_173615	exon22	c.A2184G	p.V728V	.	.	62	37	85	0	.	1
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	248	5	160	0	.	515
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68273376	68273376	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZFYVE26	NM_015346	exon6	c.A903G	p.L301L	.	.	80	47	95	0	.	162
ZIM3	114026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57647323	57647323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZIM3	NM_052882	exon5	c.C382T	p.P128S	.	.	84	40	146	0	.	92
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27419760	27419760	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF184	NM_007149	exon6	c.A1578G	p.Q526Q	.	.	107	28	51	0	.	91
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123600474	123600474	+	Silent	SNP	C	C	A	rs143645376	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF202	NM_003455	exon5	c.G462T	p.V154V	.	.	51	11	72	0	C|0.998;T|0.002	91
ZNF219	51222	broad.mit.edu	37	14	21558965	21558965	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF219	NM_001102454	exon5	c.A1899T	p.A633A	.	.	60	3	72	0	.	90
ZNF23	7571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71482852	71482852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF23	NM_145911	exon6	c.C1076G	p.T359R	.	.	60	23	77	0	.	90
ZNF417	147687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58420786	58420786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF417	NM_152475	exon3	c.A860T	p.Q287L	.	.	188	72	270	0	.	90
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	32845521	32845524	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF507	NM_001136156	exon3	c.1785_1788del	p.595_596del	.	.	72	37	116	0	.	230
ZNF716	441234	broad.mit.edu	37	7	57522206	57522206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF716	NM_001159279	exon2	c.T80A	p.L27Q	.	.	285	5	314	0	.	24
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38028629	38028629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZNF793	NM_001013659	exon8	c.C1069T	p.H357Y	.	.	51	18	98	0	.	68
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	88	28	94	1	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	73	21	85	0	.	.
ZSCAN18	65982	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58597611	58597611	+	Silent	SNP	G	G	A	rs147947490	byfrequency;alternate_allele	TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	ZSCAN18	NM_001145542	exon6	c.C936T	p.D312D	.	.	102	48	208	0	G|0.993;C|0.007	90
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63174666	63174667	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	p.ED842DY	.	.	.	.	.	.	.	
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140476384	140476385	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-CC-A7IL-01A-11D-A33Q-10	TCGA-CC-A7IL-10A-01D-A33Q-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e30b274-44cd-410b-a15b-08a2080a3ba4	f75b1d6b-8497-4452-b100-4b5bda7ff6e7	.	.	.	.	.	p.QP670HA	.	.	.	.	.	.	.	
