Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9020503	9020503	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	A2ML1	NM_144670	exon30	c.G3783A	p.E1261E	.	.	244	89	216	2	.	93
ABCA13	154664	bcgsc.ca	37	7	48312764	48312764	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCA13	NM_152701	exon17	c.T3501C	p.F1167F	.	.	183	6	118	0	.	521
ABCB5	340273	bcgsc.ca	37	7	20691219	20691219	+	Silent	SNP	G	G	A	rs61227829	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCB5	NM_001163941	exon13	c.G1509A	p.A503A	.	.	417	28	325	0	G|0.914;A|0.086	158
ABCB6	10058	bcgsc.ca	37	2	220074983	220074983	+	Missense_Mutation	SNP	T	T	C	rs201123852		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCB6	NM_005689	exon18	c.A2389G	p.I797V	.	.	96	4	179	0	T|0.999;C|0.000	153
ABCB6	10058	bcgsc.ca	37	2	220078342	220078342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCB6	NM_005689	exon10	c.T1625C	p.M542T	.	.	70	4	122	0	.	153
ABCC9	10060	bcgsc.ca	37	12	21953983	21953983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCC9	NM_020297	exon38	c.A4645G	p.M1549V	.	.	80	4	82	0	.	96
ABCD2	225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39973407	39973407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCD2	NM_005164	exon8	c.A1807T	p.M603L	.	.	64	36	24	0	.	95
ACAD11	84129	bcgsc.ca	37	3	132294627	132294627	+	Silent	SNP	A	A	G	rs113436275		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ACAD11	NM_032169	exon17	c.T1990C	p.L664L	.	.	190	6	187	0	A|0.500;G|0.500	91
ACAP2	23527	bcgsc.ca	37	3	195029516	195029516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ACAP2	NM_012287	exon11	c.A908G	p.K303R	.	.	153	5	130	0	.	136
ACCSL	390110	bcgsc.ca	37	11	44072111	44072111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ACCSL	NM_001031854	exon3	c.A574G	p.S192G	.	.	145	5	185	1	.	95
ACSS3	79611	bcgsc.ca	37	12	81532974	81532974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ACSS3	NM_024560	exon4	c.T710C	p.L237P	.	.	187	6	156	1	.	71
ACTG2	72	bcgsc.ca	37	2	74128473	74128473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ACTG2	NM_001199893	exon2	c.A35G	p.D12G	.	.	146	6	135	0	.	90
ACTN2	88	broad.mit.edu;bcgsc.ca	37	1	236906280	236906280	+	Missense_Mutation	SNP	C	C	A	rs148189507	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ACTN2	NM_001103	exon11	c.C1192A	p.R398S	.	.	290	9	151	0	C|1.000;T|0.000	95
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	43769288	43769288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADAMTS20	NM_025003	exon36	c.T5340A	p.F1780L	.	.	314	16	269	0	.	795
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7773143	7773143	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY2	NM_020546	exon18	c.G2313A	p.V771V	.	.	412	186	382	0	.	97
ADCY5	111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	123166600	123166600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY5	NM_183357	exon1	c.C793A	p.P265T	.	.	67	17	50	0	.	94
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	131793001	131793001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY8	NM_001115	exon18	c.C3391T	p.Q1131X	.	.	127	35	93	0	.	157
AEBP1	165	bcgsc.ca	37	7	44148570	44148570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AEBP1	NM_001129	exon7	c.A1013G	p.E338G	.	.	181	7	149	2	.	90
AGAP11	119385	broad.mit.edu	37	10	88768547	88768547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_133447	exon12	c.C538T	p.P180S	.	.	1244	41	1001	1	.	.
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86810275	86810275	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_152336	exon12	c.A1668G	p.S556S	.	.	260	144	290	0	.	.
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	247024552	247024553	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AHCTF1	NM_015446	exon29	c.3808_3809insA	p.C1270fs	.	.	903	217	424	0	.	97
AKAP4	8852	bcgsc.ca	37	X	49961570	49961570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AKAP4	NM_003886	exon4	c.A248G	p.K83R	.	.	379	8	392	0	.	540
AKR1A1	10327	bcgsc.ca	37	1	46033677	46033677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AKR1A1	NM_001202413	exon6	c.A380G	p.K127R	.	.	63	5	81	1	.	226
AKR1B1	231	bcgsc.ca	37	7	134135633	134135633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	AKR1B1,NS,carcinoma,+2	AKR1B1	NM_001628	exon3	c.A256G	p.K86E	.	.	64	5	55	1	.	93
AMBRA1	55626	bcgsc.ca	37	11	46419277	46419277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AMBRA1	NM_001267782	exon20	c.A3629G	p.Q1210R	.	.	79	4	95	0	.	136
ANAPC10	10393	broad.mit.edu;bcgsc.ca	37	4	146017137	146017137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANAPC10	NM_001256709	exon4	c.G148A	p.G50R	.	.	530	16	550	0	.	650
ANGPTL7	10218	bcgsc.ca	37	1	11253640	11253640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANGPTL7	NM_021146	exon3	c.T481C	p.F161L	.	.	53	4	57	0	.	90
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139915024	139915024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANKHD1	NM_017747	exon30	c.G6928A	p.G2310R	.	.	288	115	252	0	.	185
ANKIB1	54467	bcgsc.ca	37	7	91948791	91948791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANKIB1	NM_019004	exon4	c.A634G	p.I212V	.	.	176	6	129	0	.	432
ANKMY1	51281	bcgsc.ca	37	2	241468706	241468706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANKMY1	NM_016552	exon4	c.A434G	p.Q145R	.	.	88	4	157	0	.	90
ANKRD30BP2	149992	broad.mit.edu	37	21	14417442	14417442	+	RNA	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	883	160	784	0	.	.
ANO2	57101	bcgsc.ca	37	12	5724370	5724370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANO2	NM_020373	exon18	c.T1910C	p.V637A	.	.	127	5	108	0	.	139
AP1G2	8906	bcgsc.ca	37	14	24030833	24030833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AP1G2	NM_003917	exon18	c.T1745C	p.L582P	.	.	197	8	210	0	.	45
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33925274	33925274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AP2B1	NM_001282	exon3	c.A63T	p.E21D	.	.	180	77	138	0	.	91
AP3M2	10947	bcgsc.ca	37	8	42015489	42015489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AP3M2	NM_001134296	exon4	c.A304G	p.I102V	.	.	153	6	221	0	.	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228862	21228862	+	Silent	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	APOB	NM_000384	exon26	c.T10878G	p.T3626T	.	.	350	115	273	0	.	175
APOL6	80830	bcgsc.ca	37	22	36055341	36055341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	APOL6	NM_030641	exon3	c.T730C	p.S244P	.	.	63	5	75	0	.	90
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35212596	35212596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AQR	NM_014691	exon14	c.G1158T	p.L386F	.	.	69	33	76	0	.	135
ARAP3	64411	bcgsc.ca	37	5	141041622	141041622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARAP3	NM_022481	exon20	c.A3001G	p.R1001G	.	.	77	4	68	0	.	291
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	49661391	49661391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARHGAP22	NM_001256024	exon8	c.A992G	p.N331S	.	.	282	17	244	0	.	228
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36278140	36278140	+	Silent	SNP	G	G	A	rs200811520		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARHGAP33	NM_001172630	exon20	c.G2265A	p.P755P	.	.	67	30	47	0	G|0.999;A|0.000	229
ARID2	196528	bcgsc.ca	37	12	46287421	46287421	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARID2	NM_152641	exon20	c.A5280G	p.K1760K	.	.	160	6	107	0	.	100
ARID4B	51742	broad.mit.edu	37	1	235377293	235377293	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARID4B	NM_016374	exon17	c.G1632A	p.E544E	.	.	558	11	328	1	.	228
ARL8A	127829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202104642	202104642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARL8A	NM_138795	exon5	c.G385C	p.G129R	.	.	155	40	114	0	.	229
ASB6	140459	ucsc.edu;bcgsc.ca	37	9	132400355	132400355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ASB6	NM_017873	exon6	c.A980G	p.E327G	.	.	43	4	52	0	.	226
ASTN2	23245	bcgsc.ca	37	9	119802168	119802168	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ASTN2	NM_014010	exon5	c.T1200C	p.C400C	.	.	62	4	62	0	.	161
ASZ1	136991	bcgsc.ca	37	7	117060294	117060294	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ASZ1	NM_130768	exon4	c.T363C	p.A121A	.	.	80	4	84	0	.	515
ATAT1	79969	bcgsc.ca	37	6	30595028	30595028	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATAT1	NM_001031722	exon1	c.G48A	p.E16E	.	.	158	5	117	0	.	92
ATF7IP	55729	bcgsc.ca	37	12	14610208	14610208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATF7IP	NM_018179	exon8	c.T2137C	p.F713L	.	.	171	8	156	0	.	252
ATG2B	55102	bcgsc.ca	37	14	96794738	96794738	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATG2B	NM_018036	exon14	c.A2109G	p.T703T	.	.	139	5	156	0	.	93
ATG4B	23192	bcgsc.ca	37	2	242590703	242590703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_178326	exon3	c.T137C	p.V46A	.	.	79	4	138	0	.	.
ATL1	51062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51087446	51087446	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATL1	NM_001127713	exon10	c.990+2T>A	.	.	.	94	45	120	1	.	93
ATP12A	479	bcgsc.ca	37	13	25267002	25267002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP12A	NM_001185085	exon10	c.A1363G	p.K455E	.	.	105	5	95	0	.	137
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	193028474	193028474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP13A5	NM_198505	exon21	c.G2478T	p.M826I	.	.	167	10	154	0	.	144
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36047867	36047867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP4A	NM_000704	exon12	c.C1817T	p.P606L	.	.	126	10	84	0	.	91
ATP5EP2	432369	ucsc.edu;mdanderson.org	37	13	28519559	28519559	+	RNA	SNP	C	C	G	rs192325513	by1000genomes;alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP5EP2	.	.	.	.	.	.	318	250	331	0	C|0.999;T|0.000	1
ATP6AP1	537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153657461	153657461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP6AP1	NM_001183	exon2	c.T229A	p.Y77N	.	.	197	33	268	0	.	138
ATP6V1H	51606	bcgsc.ca	37	8	54708328	54708328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP6V1H	NM_015941	exon9	c.T749C	p.L250P	.	.	145	12	161	11	.	90
ATP8B3	148229	bcgsc.ca	37	19	1790795	1790795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_138813	exon21	c.T2339C	p.L780P	.	.	82	4	104	2	.	.
ATP9B	374868	bcgsc.ca	37	18	77097354	77097354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP9B	NM_198531	exon19	c.A2188G	p.R730G	.	.	79	4	57	0	.	93
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117607492	117607492	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATRNL1	NM_207303	exon28	c.T4008A	p.P1336P	.	.	229	70	207	0	.	96
BCAT1	586	bcgsc.ca	37	12	24995081	24995081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BCAT1	NM_001178093	exon7	c.A788G	p.E263G	.	.	169	6	195	0	.	522
BCLAF1	9774	broad.mit.edu;bcgsc.ca	37	6	136597454	136597454	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BCLAF1	NM_014739	exon5	c.G1209A	p.E403E	.	.	962	29	869	0	.	228
BLVRA	644	bcgsc.ca	37	7	43840072	43840072	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BLVRA	NM_001253823	exon7	c.T361C	p.L121L	.	.	216	6	163	0	.	91
BNC2	54796	bcgsc.ca	37	9	16436106	16436106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BNC2	NM_017637	exon6	c.A2086G	p.R696G	.	.	135	5	141	0	.	92
BRD1	23774	bcgsc.ca	37	22	50168019	50168019	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BRD1	NM_014577	exon12	c.A3039G	p.E1013E	.	.	60	4	68	0	.	91
BRD9	65980	bcgsc.ca	37	5	891795	891795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BRD9	NM_023924	exon2	c.A227G	p.K76R	.	.	143	5	122	0	.	90
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105716439	105716439	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BTBD6	NM_033271	exon5	c.C888T	p.G296G	.	.	41	25	48	0	.	90
BZW1	9689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201677965	201677965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BZW1	NM_001207068	exon2	c.C121T	p.P41S	.	.	117	62	98	0	.	90
C10orf76	79591	broad.mit.edu	37	10	103755099	103755099	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C10orf76	NM_024541	exon16	c.T1164C	p.L388L	.	.	279	7	235	0	.	90
C15orf55	256646	bcgsc.ca	37	15	34648640	34648640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C15orf55	NM_175741	exon7	c.A2347G	p.S783G	.	.	63	4	65	0	.	206
C16orf96	342346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4641701	4641701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001145011	exon10	c.A2627T	p.E876V	.	.	338	52	264	0	.	.
C3orf70	285382	bcgsc.ca	37	3	184801190	184801190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C3orf70	NM_001025266	exon2	c.T358C	p.S120P	.	.	76	5	84	0	.	68
C5orf28	64417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	43446540	43446540	+	Silent	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C5orf28	NM_022483	exon3	c.T432G	p.L144L	.	.	214	13	195	0	.	90
C6orf47	57827	bcgsc.ca	37	6	31627553	31627553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C6orf47	NM_021184	exon1	c.A172G	p.T58A	.	.	192	6	173	0	.	91
C6orf57	135154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71298368	71298368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C6orf57	NM_145267	exon3	c.G268C	p.G90R	.	.	281	120	262	0	.	90
CCDC141	285025	bcgsc.ca	37	2	179736171	179736171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CCDC141	NM_173648	exon14	c.A2188G	p.M730V	.	.	196	7	140	0	.	78
CCDC168	643677	broad.mit.edu	37	13	103383671	103383671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001146197	exon4	c.T19376C	p.F6459S	.	.	519	9	444	0	.	.
CCDC178	374864	broad.mit.edu;bcgsc.ca	37	18	30969595	30969595	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001105528	exon5	c.119-2A>G	.	.	.	575	17	338	0	.	.
CCDC28A	25901	bcgsc.ca	37	6	139113886	139113886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CCDC28A	NM_015439	exon6	c.A771G	p.I257M	.	.	62	4	60	0	.	90
CCDC69	26112	bcgsc.ca	37	5	150565645	150565645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CCDC69	NM_015621	exon6	c.A434G	p.Q145R	.	.	69	4	48	0	.	92
CCER1	196477	mdanderson.org	37	12	91348040	91348040	+	Silent	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_152638	exon1	c.G480C	p.R160R	.	.	22	11	16	0	.	.
CCT6P1	643253	broad.mit.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	96	8	64	4	.	.
CD109	135228	bcgsc.ca	37	6	74468674	74468674	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CD109	NM_133493	exon7	c.A681G	p.P227P	.	.	58	4	45	0	.	155
CDH26	60437	bcgsc.ca	37	20	58570990	58570990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDH26	NM_177980	exon12	c.T1769C	p.V590A	.	.	177	6	143	0	.	93
CDH5	1003	bcgsc.ca	37	16	66422318	66422318	+	Silent	SNP	A	A	G	rs112140637	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDH5	NM_001795	exon4	c.A591G	p.K197K	.	.	122	5	175	0	A|0.994;G|0.006	525
CDH6	1004	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31297484	31297484	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDH6	NM_004932	exon4	c.A612G	p.G204G	.	.	294	124	220	1	.	159
CDK14	5218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	90355912	90355912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDK14	NM_012395	exon2	c.G101T	p.C34F	.	.	194	11	180	0	.	970
CDK9	1025	bcgsc.ca	37	9	130549844	130549844	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDK9	NM_001261	exon3	c.A222G	p.K74K	.	.	225	9	267	1	.	521
CELSR1	9620	bcgsc.ca	37	22	46932066	46932066	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CELSR1	NM_014246	exon1	c.G1002A	p.S334S	.	.	75	4	99	0	.	525
CENPE	1062	broad.mit.edu	37	4	104054913	104054913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CENPE	NM_001813	exon41	c.A6659G	p.D2220G	.	.	430	6	443	0	.	277
CEP104	9731	broad.mit.edu;bcgsc.ca	37	1	3756227	3756227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CEP104	NM_014704	exon7	c.A680G	p.K227R	.	.	460	10	451	4	.	92
CES1P1	51716	bcgsc.ca	37	16	55794603	55794603	+	RNA	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	109	6	146	0	.	.
CFH	3075	bcgsc.ca	37	1	196706042	196706042	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CFH	NM_000186	exon16	c.A2502G	p.K834K	.	.	324	9	163	0	.	566
CHAC1	79094	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	41247963	41247963	+	Silent	SNP	G	G	A	rs147315683	bycluster;byfrequency;by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHAC1	NM_024111	exon3	c.G786A	p.A262A	.	.	30	9	18	0	G|0.999;A|0.001	90
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40049753	40049753	+	Missense_Mutation	SNP	T	T	A	rs140430642	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHD6	NM_032221	exon31	c.A5522T	p.D1841V	.	.	89	54	116	0	T|1.000;C|0.000	238
CHPF	79586	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220404778	220404778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHPF	NM_024536	exon4	c.G1655A	p.R552H	.	.	33	13	55	1	.	90
CIT	11113	bcgsc.ca	37	12	120148168	120148168	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CIT	NM_001206999	exon39	c.A4959G	p.E1653E	.	.	108	5	110	0	.	399
CLCC1	23155	bcgsc.ca	37	1	109482761	109482761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CLCC1	NM_001048210	exon8	c.G800T	p.W267L	.	.	92	4	101	0	.	91
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10150973	10150973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CLEC1B	NM_016509	exon2	c.C71A	p.S24Y	.	.	244	11	238	0	.	90
CLVS2	134829	bcgsc.ca	37	6	123319224	123319224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CLVS2	NM_001010852	exon2	c.A302G	p.K101R	.	.	57	5	66	0	.	27
CNGB1	1258	broad.mit.edu;bcgsc.ca	37	16	57953034	57953034	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CNGB1	NM_001297	exon20	c.C1926T	p.Y642Y	.	.	216	6	302	0	.	137
CNKSR2	22866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21550127	21550127	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CNKSR2	NM_001168647	exon11	c.T1245C	p.Y415Y	.	.	346	66	354	0	.	625
CNTN4	152330	bcgsc.ca	37	3	2924827	2924827	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CNTN4	NM_175607	exon9	c.653-2A>G	.	.	.	90	4	100	0	.	344
COL17A1	1308	broad.mit.edu	37	10	105816838	105816838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL17A1	NM_000494	exon17	c.G1360T	p.A454S	.	.	77	12	56	3	.	95
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7571014	7571014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL28A1	NM_001037763	exon3	c.G646A	p.D216N	.	.	148	50	124	0	.	93
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	110804702	110804702	+	Missense_Mutation	SNP	A	A	G	rs201012509		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL4A1	NM_001845	exon51	c.T4907C	p.I1636T	.	.	142	53	99	0	A|0.999;G|0.000	654
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107834827	107834827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL4A5	NM_000495	exon21	c.C1376T	p.P459L	.	.	566	150	735	0	.	133
COL5A2	1290	bcgsc.ca	37	2	189916100	189916100	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL5A2	NM_000393	exon42	c.T2877C	p.A959A	.	.	218	8	170	1	.	92
COL6A6	131873	bcgsc.ca	37	3	130284306	130284306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL6A6	NM_001102608	exon3	c.A1130G	p.K377R	.	.	95	4	104	0	.	76
COPS8	10920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237998516	237998516	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COPS8	NM_006710	exon4	c.A210G	p.E70E	.	.	79	42	157	0	.	228
CPM	1368	bcgsc.ca	37	12	69264085	69264085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CPM	NM_001005502	exon5	c.A526G	p.K176E	.	.	171	6	130	0	.	650
CRLF1	9244	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18709391	18709391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CRLF1	NM_004750	exon4	c.C548T	p.T183I	.	.	198	44	115	1	.	514
CROCCP2	84809	broad.mit.edu	37	1	16945145	16945145	+	RNA	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	19	6	16	0	.	.
CSDC2	27254	bcgsc.ca	37	22	41968129	41968129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CSDC2	NM_014460	exon2	c.A160G	p.T54A	.	.	149	7	215	0	.	90
CSF3R	1441	bcgsc.ca	37	1	36933696	36933696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CSF3R	NM_156039	exon13	c.A1703G	p.N568S	.	.	152	6	186	0	.	515
CTCF	10664	bcgsc.ca	37	16	67645143	67645143	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CTCF	NM_006565	exon3	c.G408A	p.G136G	.	.	79	4	112	0	.	91
CXCR2	3579	broad.mit.edu	37	2	219000225	219000225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CXCR2	NM_001168298	exon4	c.C701T	p.T234I	.	.	141	5	225	0	.	658
CXXC5	51523	bcgsc.ca	37	5	139060357	139060357	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CXXC5	NM_016463	exon2	c.T249C	p.S83S	.	.	71	5	69	0	.	90
CYP2C18	1562	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96493059	96493059	+	Silent	SNP	G	G	T	rs114879149	byfrequency;alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CYP2C18	NM_000772	exon8	c.G1155T	p.T385T	.	.	291	42	266	1	G|0.996;A|0.004	95
CYP2J2	1573	bcgsc.ca	37	1	60377403	60377403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CYP2J2	NM_000775	exon4	c.A561G	p.A187A	.	.	151	5	200	0	.	91
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	14861	14861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	ENST00000361789	exon1	c.G115A	p.A39T	.	.	467	435	113	0	.	.
DCC	1630	broad.mit.edu	37	18	50994332	50994332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DCC	NM_005215	exon25	c.C3688A	p.P1230T	.	.	67	5	50	0	.	225
DCLRE1B	64858	bcgsc.ca	37	1	114450778	114450778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DCLRE1B	NM_022836	exon3	c.T503C	p.L168P	.	.	234	6	276	2	.	227
DCLRE1C	64421	broad.mit.edu	37	10	14950662	14950662	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DCLRE1C	NM_001033855	exon14	c.A1824G	p.R608R	.	.	940	11	796	0	.	228
DCT	1638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95131263	95131263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	DCT,mouth,carcinoma,+1	DCT	NM_001129889	exon1	c.C247T	p.R83C	.	.	101	48	99	0	.	94
DEF6	50619	bcgsc.ca	37	6	35280135	35280135	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DEF6	NM_022047	exon4	c.T480C	p.G160G	.	.	88	4	77	0	.	227
DEPDC1B	55789	broad.mit.edu	37	5	59941376	59941376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DEPDC1B	NM_001145208	exon4	c.G521A	p.R174H	.	.	526	10	374	0	.	91
DGAT1	8694	broad.mit.edu;mdanderson.org	37	8	145540247	145540247	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_012079	exon17	c.C1437T	p.L479L	.	.	65	30	54	1	.	.
DHX40	79665	broad.mit.edu	37	17	57684516	57684516	+	Nonsense_Mutation	SNP	C	C	T	rs143165826		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DHX40	NM_024612	exon18	c.C2323T	p.R775X	.	.	172	5	115	0	C|1.000;T|0.000	226
DICER1	23405	bcgsc.ca	37	14	95582155	95582155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DICER1	NM_030621	exon12	c.T1756C	p.L586L	.	.	128	5	182	0	.	961
DIS3L2	129563	bcgsc.ca	37	2	232952316	232952316	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DIS3L2	NM_001257282	exon6	c.T486C	p.P162P	.	.	167	6	310	0	.	136
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124399402	124399402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH10	NM_207437	exon61	c.G10224T	p.W3408C	.	.	130	21	95	0	.	95
DNAH3	55567	bcgsc.ca	37	16	20948142	20948142	+	Silent	SNP	A	A	G	rs140126023	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH3	NM_017539	exon60	c.T11688C	p.N3896N	.	.	86	4	47	0	A|0.998;G|0.002	167
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196674472	196674472	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH7	NM_018897	exon52	c.G9885A	p.R3295R	.	.	515	160	283	0	.	102
DNAJC13	23317	bcgsc.ca	37	3	132185213	132185213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAJC13	NM_015268	exon19	c.T2039C	p.V680A	.	.	265	8	310	1	.	272
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6566486	6566486	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNHD1	NM_144666	exon21	c.T4317A	p.P1439P	.	.	53	12	77	0	.	24
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172100413	172100413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNM3	NM_001136127	exon14	c.G1644C	p.W548C	.	.	231	80	132	0	.	90
DOC2A	8448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30018188	30018188	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOC2A	NM_003586	exon8	c.C796A	p.R266R	.	.	68	8	51	0	.	92
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	117752664	117752664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOCK11	NM_144658	exon31	c.T3444G	p.H1148Q	.	.	365	35	377	0	.	93
DOPEY2	9980	bcgsc.ca	37	21	37665854	37665854	+	Silent	SNP	A	A	G	rs144091243	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOPEY2	NM_005128	exon37	c.A6882G	p.E2294E	.	.	278	8	210	2	A|0.999;G|0.001	91
DRD5	1816	bcgsc.ca	37	4	9783917	9783917	+	Silent	SNP	T	T	C	rs76288744		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DRD5	NM_000798	exon1	c.T264C	p.L88L	.	.	235	45	188	19	.	91
DTX3L	151636	bcgsc.ca	37	3	122288834	122288834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DTX3L	NM_138287	exon3	c.T1898C	p.I633T	.	.	53	4	82	0	.	587
DUOXA2	405753	ucsc.edu	37	15	45410028	45410028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DUOXA2	NM_207581	exon6	c.G884A	p.G295D	.	.	28	3	49	1	.	226
DUSP8	1850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1586842	1586842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DUSP8	NM_004420	exon2	c.C215T	p.P72L	.	.	108	23	126	0	.	226
DUT	1854	bcgsc.ca	37	15	48633772	48633772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DUT	NM_001025248	exon6	c.A692G	p.E231G	.	.	225	6	226	0	.	227
DYNC1H1	1778	broad.mit.edu	37	14	102467658	102467658	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DYNC1H1	NM_001376	exon20	c.A4362G	p.Q1454Q	.	.	172	5	205	0	.	98
DYSF	8291	bcgsc.ca	37	2	71778735	71778735	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DYSF	NM_001130979	exon20	c.1732-2A>G	.	.	.	99	4	66	0	.	158
EBF2	64641	bcgsc.ca	37	8	25745399	25745399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EBF2	NM_022659	exon9	c.G841T	p.G281C	.	.	84	4	146	0	.	26
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	44112732	44112732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EFCAB6	NM_022785	exon9	c.878delT	p.L293fs	.	.	299	117	430	0	.	97
EGFLAM	133584	bcgsc.ca	37	5	38370396	38370396	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EGFLAM	NM_001205301	exon6	c.546-2A>G	.	.	.	49	4	47	0	.	187
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	38406944	38406944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EGFLAM	NM_001205301	exon8	c.T843A	p.P281P	.	.	338	21	319	0	.	187
EIF5	1983	broad.mit.edu;bcgsc.ca	37	14	103805201	103805201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EIF5	NM_001969	exon8	c.A715G	p.R239G	.	.	197	7	242	0	.	155
EIF5B	9669	bcgsc.ca	37	2	99992821	99992821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EIF5B	NM_015904	exon10	c.A1564G	p.K522E	.	.	57	4	46	0	.	93
EMCN	51705	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	101401081	101401081	+	Silent	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EMCN	NM_001159694	exon2	c.T180A	p.T60T	.	.	723	49	902	0	.	90
ENPP5	59084	bcgsc.ca	37	6	46135923	46135923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ENPP5	NM_021572	exon2	c.A77G	p.D26G	.	.	163	6	118	0	.	90
ENTPD2	954	bcgsc.ca	37	9	139946695	139946695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ENTPD2	NM_203468	exon2	c.T223C	p.C75R	.	.	106	5	112	0	.	90
EPN3	55040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48617654	48617654	+	Missense_Mutation	SNP	C	C	T	rs142210765		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EPN3	NM_017957	exon6	c.C938T	p.P313L	.	.	67	7	58	0	C|1.000;T|0.000	91
ERICH1	157697	bcgsc.ca	37	8	618628	618628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ERICH1	NM_207332	exon5	c.A1228G	p.M410V	.	.	66	4	90	0	.	153
ETV3L	440695	broad.mit.edu;bcgsc.ca	37	1	157062526	157062526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ETV3L	NM_001004341	exon5	c.C1001T	p.T334I	.	.	367	18	197	1	.	228
EYS	346007	broad.mit.edu	37	6	65655726	65655726	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EYS	NM_001142800	exon15	c.A2341T	p.K781X	.	.	376	14	274	0	.	660
F11R	50848	bcgsc.ca	37	1	160969196	160969196	+	Missense_Mutation	SNP	T	T	C	rs150177570		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	F11R	NM_016946	exon8	c.A805G	p.T269A	.	.	209	6	105	0	T|1.000;C|0.000	92
FADS6	283985	bcgsc.ca	37	17	72875536	72875536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FADS6	NM_178128	exon5	c.A904G	p.K302E	.	.	88	4	76	0	.	22
FAM174B	400451	broad.mit.edu;bcgsc.ca	37	15	93198581	93198581	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM174B	NM_207446	exon1	c.C309A	p.T103T	.	.	92	8	100	0	.	90
FAM175A	84142	broad.mit.edu	37	4	84384675	84384675	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM175A	NM_139076	exon8	c.A768G	p.K256K	.	.	609	9	581	0	.	205
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56681065	56681065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001112736	exon14	c.G1700A	p.G567D	.	.	189	93	194	0	.	.
FAM26E	254228	bcgsc.ca	37	6	116837131	116837131	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM26E	NM_153711	exon2	c.G909A	p.V303V	.	.	56	4	110	0	.	90
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	34962850	34962850	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM47B	NM_152631	exon1	c.C1902T	p.Y634Y	.	.	212	15	244	0	.	196
FAM53C	51307	ucsc.edu;bcgsc.ca	37	5	137681160	137681160	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM53C	NM_001135647	exon4	c.A783G	p.R261R	.	.	46	4	40	0	.	91
FAM71E2	284418	bcgsc.ca	37	19	55874289	55874289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001145402	exon1	c.T146C	p.V49A	.	.	107	5	87	0	.	.
FAM73A	374986	bcgsc.ca	37	1	78279525	78279525	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM73A	NM_001270384	exon6	c.A744G	p.G248G	.	.	203	6	202	2	.	91
FAM86B3P	286042	broad.mit.edu	37	8	8097154	8097154	+	RNA	SNP	C	C	T	rs140837526	by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	48	3	67	0	C|0.860;T|0.140	.
FAN1	22909	bcgsc.ca	37	15	31229435	31229435	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAN1	NM_014967	exon14	c.A3030G	p.G1010G	.	.	147	5	152	1	.	90
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	80047248	80047248	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FASN	NM_004104	exon13	c.G1978T	p.E660X	.	.	120	19	74	0	.	90
FAT1	2195	bcgsc.ca	37	4	187628175	187628175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAT1	NM_005245	exon2	c.T2807C	p.V936A	.	.	175	7	173	0	.	34
FAT2	2196	bcgsc.ca	37	5	150947015	150947015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAT2	NM_001447	exon1	c.T1478C	p.V493A	.	.	138	5	122	0	.	96
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92565042	92565042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAT3	NM_001008781	exon13	c.C9736T	p.P3246S	.	.	76	21	129	0	.	73
FAT4	79633	bcgsc.ca	37	4	126411705	126411705	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAT4	NM_024582	exon17	c.A13728G	p.E4576E	.	.	150	5	198	0	.	108
FBF1	85302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73915917	73915917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBF1	NM_001080542	exon19	c.G1925T	p.R642L	.	.	137	51	110	0	.	205
FBXL19	54620	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30958514	30958514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBXL19	NM_001099784	exon11	c.G2048A	p.R683H	.	.	24	9	14	0	.	661
FBXO15	201456	broad.mit.edu	37	18	71797840	71797840	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBXO15	NM_001142958	exon4	c.G386A	p.W129X	.	.	362	6	240	0	.	229
FGB	2244	broad.mit.edu;bcgsc.ca	37	4	155487787	155487787	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FGB	NM_005141	exon3	c.G453A	p.L151L	.	.	193	6	216	1	.	93
FITM2	128486	bcgsc.ca	37	20	42935852	42935852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FITM2	NM_001080472	exon2	c.A202G	p.T68A	.	.	56	4	99	0	.	24
FLG	2312	broad.mit.edu;bcgsc.ca	37	1	152280581	152280581	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FLG	NM_002016	exon3	c.G6781C	p.G2261R	.	.	1118	36	680	0	.	106
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153496548	153496548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FMNL2	NM_052905	exon24	c.T3023A	p.L1008Q	.	.	491	246	342	0	.	516
FNDC1	84624	bcgsc.ca	37	6	159652955	159652955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FNDC1	NM_032532	exon11	c.A1411G	p.K471E	.	.	190	6	199	0	.	138
FOLH1B	219595	broad.mit.edu	37	11	89424098	89424098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FOLH1B	NM_153696	exon11	c.A748G	p.T250A	.	.	948	9	976	1	.	519
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	29237217	29237217	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FOXG1	NM_005249	exon1	c.C732A	p.R244R	.	.	91	23	126	0	.	660
FOXS1	2307	broad.mit.edu;bcgsc.ca	37	20	30432421	30432421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FOXS1	NM_004118	exon1	c.G925A	p.G309S	.	.	235	12	138	1	.	69
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	41738507	41738507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FRS3	NM_006653	exon7	c.G1329T	p.M443I	.	.	59	22	72	0	.	92
FSHR	2492	bcgsc.ca	37	2	49247242	49247242	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FSHR	NM_181446	exon3	c.T282C	p.L94L	.	.	444	9	280	0	.	527
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	39909936	39909936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FSIP1	NM_152597	exon11	c.G1699A	p.D567N	.	.	101	54	126	0	.	517
FTX	100302692	bcgsc.ca	37	X	73325868	73325868	+	RNA	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	88	4	106	0	.	.
FZD9	8326	bcgsc.ca	37	7	72849598	72849598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FZD9	NM_003508	exon1	c.T1261C	p.F421L	.	.	81	5	39	0	.	1082
G3BP2	9908	broad.mit.edu;bcgsc.ca	37	4	76572314	76572314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	G3BP2	NM_012297	exon10	c.C956T	p.S319F	.	.	269	11	172	1	.	153
GABRA3	2556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151393310	151393310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GABRA3	NM_000808	exon6	c.A559G	p.I187V	.	.	702	199	854	0	.	131
GALNS	2588	bcgsc.ca	37	16	88880919	88880919	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GALNS	NM_000512	exon14	c.G1497A	p.P499P	.	.	93	4	131	0	.	153
GALNT4	8693	broad.mit.edu;bcgsc.ca	37	12	89917584	89917584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_003774	exon1	c.A743G	p.E248G	.	.	166	7	166	0	.	.
GAS2L2	246176	bcgsc.ca	37	17	34072495	34072495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GAS2L2	NM_139285	exon6	c.A2021G	p.K674R	.	.	74	4	70	1	.	227
GDAP2	54834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118454654	118454654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GDAP2	NM_017686	exon5	c.G521A	p.R174H	.	.	354	273	433	0	.	92
GDNF	2668	bcgsc.ca	37	5	37834889	37834889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GDNF	NM_001190468	exon2	c.T61C	p.W21R	.	.	96	5	57	0	.	90
GHR	2690	broad.mit.edu	37	5	42718676	42718676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GHR	NM_001242399	exon10	c.A1088G	p.K363R	.	.	316	8	251	0	.	659
GLYATL1	92292	bcgsc.ca	37	11	58715375	58715375	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GLYATL1	NM_080661	exon4	c.C216T	p.N72N	.	.	87	4	145	0	.	91
GOLGA8EP	390535	broad.mit.edu	37	15	23445458	23445458	+	RNA	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	25	3	52	0	.	.
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	89933635	89933635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GPR98	NM_032119	exon11	c.C2110A	p.P704T	.	.	144	12	106	0	.	103
GRHL3	57822	bcgsc.ca	37	1	24680959	24680959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GRHL3	NM_021180	exon16	c.T1805C	p.I602T	.	.	54	4	50	1	.	91
GRIK4	2900	bcgsc.ca	37	11	120838021	120838021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GRIK4	NM_014619	exon17	c.A2384G	p.H795R	.	.	64	4	61	0	.	92
GRIN2B	2904	bcgsc.ca	37	12	13716718	13716718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GRIN2B	NM_000834	exon13	c.A3454G	p.T1152A	.	.	124	5	134	1	.	231
GTF2B	2959	bcgsc.ca	37	1	89352994	89352994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GTF2B	NM_001514	exon2	c.A74G	p.E25G	.	.	199	6	197	0	.	154
HABP4	22927	bcgsc.ca	37	9	99227730	99227730	+	Silent	SNP	T	T	C	rs150625659		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HABP4	NM_014282	exon3	c.T624C	p.F208F	.	.	77	4	90	0	T|1.000;C|0.000	91
HCFC1	3054	bcgsc.ca	37	X	153223590	153223590	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HCFC1	NM_005334	exon11	c.A1914G	p.S638S	.	.	85	5	101	1	.	132
HDAC4	9759	bcgsc.ca	37	2	239975250	239975250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HDAC4	NM_006037	exon26	c.T3121C	p.S1041P	.	.	39	4	74	0	.	291
HFE	3077	bcgsc.ca	37	6	26087706	26087706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HFE	NM_139006	exon1	c.T38C	p.M13T	.	.	86	4	67	0	.	90
HIPK1	204851	bcgsc.ca	37	1	114512579	114512579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HIPK1	NM_198268	exon14	c.T2773C	p.S925P	.	.	171	5	157	1	.	361
HIST1H2BB	3018	broad.mit.edu;bcgsc.ca	37	6	26043596	26043596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HIST1H2BB	NM_021062	exon1	c.C290T	p.T97M	.	.	175	12	160	1	.	90
HNRNPL	3191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39329152	39329152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HNRNPL	NM_001533	exon10	c.G1442A	p.R481Q	.	.	337	124	219	3	.	22
HPX	3263	bcgsc.ca	37	11	6453210	6453210	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HPX	NM_000613	exon8	c.C873T	p.G291G	.	.	71	4	77	0	.	90
HTR2C	3358	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	113965762	113965762	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTR2C	NM_000868	exon4	c.C95G	p.A32G	.	.	615	40	745	2	.	133
HTR3D	200909	broad.mit.edu;bcgsc.ca	37	3	183753882	183753882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTR3D	NM_001163646	exon3	c.A374G	p.E125G	.	.	140	9	127	0	.	90
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3230361	3230361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTT	NM_002111	exon58	c.G7868T	p.W2623L	.	.	80	38	57	0	.	281
IFI44L	10964	bcgsc.ca	37	1	79106786	79106786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IFI44L	NM_006820	exon7	c.T1129C	p.S377P	.	.	130	5	164	0	.	90
IGSF10	285313	bcgsc.ca	37	3	151164457	151164457	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IGSF10	NM_178822	exon4	c.T3312C	p.T1104T	.	.	79	4	73	0	.	102
IKBKAP	8518	bcgsc.ca	37	9	111644406	111644406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IKBKAP	NM_003640	exon30	c.T3284C	p.L1095P	.	.	76	4	93	0	.	318
IL9	3578	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	135231424	135231424	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IL9	NM_000590	exon1	c.C82T	p.L28L	.	.	250	22	216	1	.	90
IMPDH2	3615	bcgsc.ca	37	3	49063983	49063983	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IMPDH2	NM_000884	exon8	c.A879G	p.K293K	.	.	153	5	168	0	.	227
IMPG2	50939	bcgsc.ca	37	3	100949839	100949839	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	IMPG2	NM_016247	exon16	c.A3384G	p.Q1128Q	.	.	110	6	128	0	.	93
INADL	10207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62237159	62237159	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INADL	NM_176877	exon6	c.A581T	p.D194V	.	.	753	83	829	1	.	94
INF2	64423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105174811	105174811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INF2	NM_022489	exon9	c.G1774A	p.A592T	.	.	85	15	84	0	.	492
INSC	387755	bcgsc.ca	37	11	15197601	15197601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INSC	NM_001031853	exon3	c.T512C	p.V171A	.	.	94	4	112	0	.	94
INSRR	3645	broad.mit.edu;bcgsc.ca	37	1	156828412	156828412	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INSRR	NM_014215	exon1	c.T2A	p.M1K	.	.	193	8	112	0	.	1403
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95839952	95839952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INTS8	NM_017864	exon4	c.C449A	p.A150E	.	.	271	11	173	0	.	90
ITGA11	22801	bcgsc.ca	37	15	68608054	68608054	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITGA11	NM_001004439	exon22	c.T2727C	p.R909R	.	.	94	5	121	0	.	538
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31426269	31426269	+	Missense_Mutation	SNP	G	G	A	rs200483957		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITGAD	NM_005353	exon18	c.G2240A	p.R747H	.	.	110	50	92	0	.	226
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4726834	4726834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITPR1	NM_001099952	exon30	c.C3619T	p.R1207W	.	.	70	30	90	0	.	710
ITPRIP	85450	bcgsc.ca	37	10	106074684	106074684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITPRIP	NM_001272013	exon2	c.T1126C	p.S376P	.	.	66	4	92	0	.	90
JAK2	3717	bcgsc.ca	37	9	5126699	5126699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	JAK2	NM_004972	exon25	c.A3307G	p.T1103A	.	.	234	6	294	1	.	75307
KANSL3	55683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97285440	97285440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001115016	exon4	c.C446G	p.S149C	.	.	302	158	229	0	.	.
KATNAL2	83473	bcgsc.ca	37	18	44593444	44593444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KATNAL2	NM_031303	exon8	c.A563G	p.D188G	.	.	135	5	112	2	.	93
KCNH5	27133	bcgsc.ca	37	14	63174968	63174968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KCNH5	NM_139318	exon11	c.A2225G	p.Q742R	.	.	191	6	264	0	.	98
KCNK5	8645	bcgsc.ca	37	6	39159234	39159234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KCNK5	NM_003740	exon5	c.A932G	p.K311R	.	.	144	5	131	2	.	227
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2718691	2718691	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KCNV2	NM_133497	exon1	c.C952T	p.L318L	.	.	97	9	113	0	.	515
KEL	3792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142639989	142639989	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KEL	NM_000420	exon17	c.C1914T	p.D638D	.	.	147	8	121	0	.	93
KIAA0368	23392	bcgsc.ca	37	9	114180260	114180260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIAA0368	NM_001080398	exon18	c.A2120G	p.Q707R	.	.	157	5	142	0	.	68
KIAA1432	57589	bcgsc.ca	37	9	5774179	5774179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIAA1432	NM_020829	exon26	c.A4205G	p.E1402G	.	.	149	6	153	1	.	90
KIF12	113220	bcgsc.ca	37	9	116858473	116858473	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIF12	NM_138424	exon6	c.T339C	p.P113P	.	.	78	4	97	0	.	90
KIR2DL3	3804	bcgsc.ca	37	19	55263109	55263109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIR2DL3	NM_015868	exon6	c.A724G	p.R242G	.	.	214	6	159	0	.	92
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158059385	158059385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIRREL	NM_018240	exon9	c.G1138A	p.V380M	.	.	174	47	85	0	.	91
KLHDC8B	200942	bcgsc.ca	37	3	49210227	49210227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KLHDC8B	NM_173546	exon2	c.T25C	p.F9L	.	.	63	4	78	0	.	90
KNG1	3827	bcgsc.ca	37	3	186459588	186459588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KNG1	NM_001102416	exon10	c.A1403G	p.Q468R	.	.	88	4	83	0	.	92
KTN1	3895	bcgsc.ca	37	14	56138315	56138315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KTN1	NM_001079521	exon36	c.A3380G	p.E1127G	.	.	202	6	215	0	.	1147
L1TD1	54596	broad.mit.edu	37	1	62676877	62676877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	L1TD1	NM_001164835	exon5	c.T2431C	p.F811L	.	.	360	7	419	1	.	92
LAIR1	3903	bcgsc.ca	37	19	54868207	54868207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LAIR1	NM_002287	exon6	c.T476C	p.L159P	.	.	147	5	114	0	.	94
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183085929	183085929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LAMC1	NM_002293	exon8	c.A1455G	p.E485E	.	.	572	150	293	0	.	252
LDHA	3939	bcgsc.ca	37	11	18420986	18420986	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LDHA	NM_001165414	exon3	c.A222G	p.A74A	.	.	239	7	254	1	.	650
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	189700835	189700835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LEPREL1	NM_018192	exon8	c.G1324A	p.G442S	.	.	365	21	396	0	.	155
LGALS17A	0	bcgsc.ca	37	19	40172748	40172748	+	RNA	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	218	8	137	1	.	.
LHCGR	3973	broad.mit.edu;bcgsc.ca	37	2	48914906	48914906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LHCGR	NM_000233	exon11	c.C2030G	p.T677S	.	.	227	11	215	0	.	589
LINC00674	100499466	ucsc.edu;bcgsc.ca	37	17	66124208	66124208	+	RNA	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	42	4	38	0	.	.
LMO7	4008	bcgsc.ca	37	13	76382266	76382266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LMO7	NM_015842	exon7	c.A1148G	p.D383G	.	.	50	4	109	0	.	586
LOC100505782	0	ucsc.edu	37	17	39564981	39564981	+	RNA	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	49	4	45	0	.	.
LOC100631378	0	broad.mit.edu	37	19	38314619	38314619	+	RNA	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	27	16	11	0	.	.
LOC100996455	0	bcgsc.ca	37	11	64217596	64217596	+	RNA	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	91	6	100	0	.	.
LOC392232	0	bcgsc.ca	37	8	73163748	73163748	+	RNA	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	28	4	22	0	.	.
LOXL2	4017	bcgsc.ca	37	8	23155636	23155636	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LOXL2	NM_002318	exon15	c.2246-1G>T	.	.	.	56	4	101	0	.	272
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57599015	57599015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LRP1	NM_002332	exon73	c.A11318G	p.E3773G	.	.	75	19	69	0	.	596
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40745384	40745384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LRRK2	NM_198578	exon44	c.G6425A	p.R2142K	.	.	179	10	195	0	.	533
LTN1	26046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30354673	30354673	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LTN1	NM_015565	exon5	c.T732C	p.L244L	.	.	182	87	101	0	.	530
LY6G6E	79136	broad.mit.edu	37	6	31680318	31680318	+	RNA	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	177	7	153	1	.	.
LYPD1	116372	bcgsc.ca	37	2	133426068	133426068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LYPD1	NM_144586	exon2	c.A95G	p.Q32R	.	.	131	5	95	0	.	90
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	29599920	29599920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LYZL1	NM_032517	exon5	c.C517A	p.Q173K	.	.	195	104	159	0	.	90
MAEA	10296	broad.mit.edu;bcgsc.ca	37	4	1309274	1309274	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAEA	NM_005882	exon3	c.C342T	p.P114P	.	.	306	9	173	1	.	91
MAMDC2	256691	bcgsc.ca	37	9	72659509	72659509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAMDC2	NM_153267	exon2	c.T44C	p.L15P	.	.	78	4	93	0	.	91
MAN1C1	57134	bcgsc.ca	37	1	26110183	26110183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAN1C1	NM_020379	exon12	c.A1796G	p.D599G	.	.	76	4	57	0	.	91
MAN2A1	4124	bcgsc.ca	37	5	109103383	109103383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAN2A1	NM_002372	exon6	c.T983C	p.L328S	.	.	89	5	83	0	.	92
MAP3K1	4214	bcgsc.ca	37	5	56168753	56168753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAP3K1	NM_005921	exon9	c.A1607G	p.E536G	.	.	230	6	187	1	.	956
MAPK15	225689	broad.mit.edu	37	8	144803214	144803214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAPK15	NM_139021	exon10	c.G962A	p.R321Q	.	.	137	6	98	0	.	1378
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42115228	42115228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAPKBP1	NM_001128608	exon29	c.G3424A	p.A1142T	.	.	61	31	60	0	.	589
MARVELD3	91862	broad.mit.edu;bcgsc.ca	37	16	71663282	71663282	+	Missense_Mutation	SNP	G	G	A	rs149016402	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MARVELD3	NM_001271329	exon2	c.G317A	p.R106Q	.	.	181	6	217	0	G|1.000;C|0.000	91
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74161889	74161889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MB21D1	NM_138441	exon1	c.G16A	p.G6R	.	.	110	25	69	0	.	90
MCAT	27349	bcgsc.ca	37	22	43529146	43529146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MCAT	NM_173467	exon4	c.A1076G	p.K359R	.	.	82	4	143	0	.	91
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183056602	183056602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MCF2L2	NM_015078	exon5	c.A472C	p.K158Q	.	.	147	51	151	0	.	293
MCF2L	23263	bcgsc.ca	37	13	113748905	113748905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MCF2L	NM_001112732	exon27	c.T3031C	p.S1011P	.	.	177	10	82	0	.	228
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114655974	114655974	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MDFIC	NM_199072	exon5	c.T1053C	p.I351I	.	.	267	106	225	0	.	91
MDS2	259283	bcgsc.ca	37	1	23966924	23966924	+	RNA	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MDS2	.	.	.	.	.	.	111	5	144	0	.	638
MERTK	10461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112786337	112786337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MERTK	NM_006343	exon19	c.G2896C	p.G966R	.	.	80	28	68	0	.	1463
MFHAS1	9258	bcgsc.ca	37	8	8748111	8748111	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MFHAS1	NM_004225	exon1	c.T2458C	p.L820L	.	.	41	4	73	0	.	90
MFSD10	10227	bcgsc.ca	37	4	2933599	2933599	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MFSD10	NM_001120	exon7	c.G867T	p.L289L	.	.	104	5	108	0	.	68
MGAT1	4245	bcgsc.ca	37	5	180218956	180218956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MGAT1	NM_001114617	exon3	c.T1016C	p.V339A	.	.	85	5	77	0	.	91
MGC34796	0	bcgsc.ca	37	1	62120137	62120137	+	RNA	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	58	4	68	0	.	.
MICAL2	9645	bcgsc.ca	37	11	12183898	12183898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MICAL2	NM_014632	exon3	c.T196C	p.W66R	.	.	94	4	94	0	.	92
MKRN1	23608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140156621	140156621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MKRN1	NM_013446	exon5	c.G817T	p.V273L	.	.	129	44	103	0	.	91
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	75513372	75513372	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MLH3	NM_014381	exon2	c.2987delG	p.G996fs	.	.	269	62	340	0	.	228
MMP13	4322	bcgsc.ca	37	11	102826213	102826213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MMP13	NM_002427	exon2	c.A130G	p.R44G	.	.	190	6	202	0	.	229
MPHOSPH9	10198	bcgsc.ca	37	12	123694644	123694644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MPHOSPH9	NM_022782	exon4	c.A697G	p.T233A	.	.	173	6	125	0	.	514
MPP5	64398	bcgsc.ca	37	14	67787973	67787973	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MPP5	NM_022474	exon13	c.A1737G	p.T579T	.	.	116	5	134	0	.	91
MRPS16	51021	ucsc.edu	37	10	75008797	75008797	+	RNA	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MRPS16	.	.	.	.	.	.	111	1	80	0	.	90
MS4A6A	64231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59947427	59947427	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MS4A6A	NM_001247999	exon4	c.C243A	p.I81I	.	.	163	86	158	0	.	90
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80021280	80021280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MSH3	NM_002439	exon9	c.A1349G	p.D450G	.	.	388	16	317	0	.	661
MSLN	10232	bcgsc.ca	37	16	816452	816452	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MSLN	NM_005823	exon13	c.T1192C	p.L398L	.	.	113	5	102	0	.	91
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9703950	9703950	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MTMR14	NM_001077525	exon3	c.309-1G>A	.	.	.	188	39	204	0	.	91
MTOR	2475	bcgsc.ca	37	1	11303356	11303356	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MTOR	NM_004958	exon9	c.T1227C	p.D409D	.	.	86	4	99	0	.	1439
MUC16	94025	bcgsc.ca	37	19	8976347	8976347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon75	c.C42481A	p.Q14161K	.	.	97	5	140	0	.	566
MUC16	94025	bcgsc.ca	37	19	9072427	9072427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon3	c.A15019G	p.T5007A	.	.	127	7	166	1	.	566
MUC16	94025	broad.mit.edu;bcgsc.ca	37	19	9065977	9065977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon3	c.C21469T	p.H7157Y	.	.	388	9	580	0	.	566
MUC16	94025	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	9047545	9047545	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon5	c.C34086A	p.P11362P	.	.	328	23	501	8	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	9074278	9074278	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon3	c.C13168T	p.Q4390X	.	.	395	36	529	0	.	566
MUC4	4585	hgsc.bcm.edu	37	3	195518110	195518110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC4	NM_018406	exon2	c.C341T	p.A114V	.	.	262	19	335	0	.	90
MUC6	4588	bcgsc.ca	37	11	1017566	1017566	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC6	NM_005961	exon31	c.C5235T	p.T1745T	.	.	1127	51	1603	41	.	23
MUC7	4589	hgsc.bcm.edu;broad.mit.edu	37	4	71346650	71346650	+	Nonsense_Mutation	SNP	T	T	A	rs147746777	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC7	NM_001145007	exon4	c.T189A	p.Y63X	.	.	273	12	214	0	T|1.000;C|0.000	93
MYBPH	4608	broad.mit.edu	37	1	203144508	203144508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYBPH	NM_004997	exon2	c.G287A	p.R96K	.	.	354	10	232	0	.	90
MYCBP2	23077	bcgsc.ca	37	13	77640183	77640183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYCBP2	NM_015057	exon72	c.T12496C	p.S4166P	.	.	55	4	101	0	.	236
MYEF2	50804	broad.mit.edu;mdanderson.org	37	15	48470360	48470360	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYEF2	NM_016132	exon1	c.G75A	p.P25P	.	.	20	5	12	0	.	523
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15931795	15931795	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYH11	NM_001040114	exon2	c.G315A	p.L105L	.	.	224	102	192	0	.	666
MYH1	4619	broad.mit.edu	37	17	10399774	10399774	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYH1	NM_005963	exon34	c.A4749G	p.K1583K	.	.	750	10	645	1	.	171
MYLK3	91807	bcgsc.ca	37	16	46761291	46761291	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYLK3	NM_182493	exon9	c.1773-2A>G	.	.	.	90	5	64	0	.	374
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47500944	47500944	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYO5B	NM_001080467	exon10	c.G1098A	p.G366G	.	.	133	52	105	0	.	72
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76599823	76599823	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYO6	NM_004999	exon26	c.T2708G	p.V903G	.	.	325	123	273	0	.	92
MYOF	26509	broad.mit.edu	37	10	95111319	95111319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYOF	NM_013451	exon34	c.G3673T	p.E1225X	.	.	327	7	255	1	.	93
MYOM1	8736	bcgsc.ca	37	18	3151800	3151800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYOM1	NM_003803	exon12	c.T1735C	p.S579P	.	.	161	6	101	0	.	94
MYOM2	9172	ucsc.edu;bcgsc.ca	37	8	2033424	2033424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYOM2	NM_003970	exon14	c.G1546A	p.G516S	.	.	36	4	60	0	.	95
MYOM3	127294	bcgsc.ca	37	1	24394783	24394783	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYOM3	NM_152372	exon26	c.A3225G	p.K1075K	.	.	219	6	274	0	.	93
MYT1L	23040	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1946902	1946902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYT1L	NM_015025	exon9	c.T357A	p.D119E	.	.	634	28	546	1	.	95
MZB1	51237	bcgsc.ca	37	5	138723535	138723535	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_016459	exon4	c.A489G	p.R163R	.	.	197	6	174	0	.	.
N4BP3	23138	bcgsc.ca	37	5	177548649	177548649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	N4BP3	NM_015111	exon5	c.A1282G	p.S428G	.	.	55	4	47	1	.	90
NAGA	4668	bcgsc.ca	37	22	42463271	42463271	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NAGA	NM_000262	exon4	c.G348A	p.L116L	.	.	49	4	69	0	.	90
NAGS	162417	bcgsc.ca	37	17	42083128	42083128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NAGS	NM_153006	exon2	c.T550C	p.S184P	.	.	102	14	81	6	.	90
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	22664428	22664428	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NCAM2	NM_004540	exon5	c.G486A	p.R162R	.	.	489	37	352	0	.	94
NDRG1	10397	bcgsc.ca	37	8	134269040	134269040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NDRG1	NM_006096	exon8	c.A517G	p.M173V	.	.	65	4	51	1	.	230
NEB	4703	broad.mit.edu;bcgsc.ca	37	2	152531059	152531059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NEB	NM_004543	exon36	c.G3919A	p.G1307S	.	.	220	7	199	0	.	145
NEO1	4756	bcgsc.ca	37	15	73593708	73593708	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NEO1	NM_002499	exon28	c.T4212C	p.T1404T	.	.	125	5	137	0	.	116
NFATC4	4776	bcgsc.ca	37	14	24845291	24845291	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFATC4	NM_001198967	exon9	c.T2229C	p.S743S	.	.	116	5	122	0	.	92
NFIB	4781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14307000	14307000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFIB	NM_001190738	exon2	c.G628A	p.V210M	.	.	157	83	160	0	.	226
NFKBIB	4793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39395721	39395721	+	Silent	SNP	C	C	A	rs142337920	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFKBIB	NM_002503	exon2	c.C246A	p.A82A	.	.	326	130	214	0	C|1.000;T|0.000	658
NFX1	4799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33351695	33351695	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFX1	NM_147133	exon16	c.G2562A	p.Q854Q	.	.	91	16	90	0	.	91
NKX3-2	579	hgsc.bcm.edu	37	4	13545688	13545688	+	Silent	SNP	G	G	C	rs145908097	by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NKX3-2	NM_001189	exon1	c.C351G	p.G117G	.	.	28	14	1	0	G|0.996;C|0.004	68
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117696859	117696859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NOS1	NM_000620	exon15	c.G2444T	p.G815V	.	.	161	39	140	0	.	154
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100105359	100105359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NOX1	NM_013955	exon9	c.C914T	p.S305F	.	.	183	103	248	0	.	131
NPC2	10577	bcgsc.ca	37	14	74947431	74947431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NPC2	NM_006432	exon4	c.T415C	p.F139L	.	.	203	6	209	2	.	90
NPFFR2	10886	bcgsc.ca	37	4	73012961	73012961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NPFFR2	NM_004885	exon4	c.T1001C	p.L334P	.	.	230	7	188	0	.	92
NR4A3	8013	bcgsc.ca	37	9	102590360	102590360	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NR4A3	NM_173200	exon4	c.T69C	p.P23P	.	.	104	5	119	0	.	186
NRG1	3084	bcgsc.ca	37	8	32617774	32617774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NRG1	NM_013956	exon12	c.T1133C	p.M378T	.	.	94	5	141	0	.	525
NUPR1L	389493	hgsc.bcm.edu	37	7	56183794	56183794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001145712	exon1	c.G214A	p.V72I	.	.	38	20	7	0	.	.
OR10G2	26534	bcgsc.ca	37	14	22103065	22103065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR10G2	.	.	.	.	.	.	10	3	20	0	.	69
OR10T2	128360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158369189	158369189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR10T2	NM_001004475	exon1	c.A68G	p.E23G	.	.	182	17	99	0	.	70
OR51F1	256892	bcgsc.ca	37	11	4790818	4790818	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR51F1	NM_001004752	exon1	c.T330C	p.T110T	.	.	149	6	155	0	.	70
OR52J3	119679	bcgsc.ca	37	11	5067994	5067994	+	Missense_Mutation	SNP	T	T	C	rs201936814		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR52J3	NM_001001916	exon1	c.T239C	p.V80A	.	.	372	8	474	0	T|1.000;C|0.000	71
OR5C1	392391	bcgsc.ca	37	9	125551502	125551502	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR5C1	NM_001001923	exon1	c.T291C	p.P97P	.	.	91	4	117	0	.	69
OR5D16	390144	bcgsc.ca	37	11	55606734	55606734	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR5D16	NM_001005496	exon1	c.T507C	p.S169S	.	.	328	8	398	0	.	73
OR5D18	219438	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55587248	55587248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR5D18	NM_001001952	exon1	c.T143C	p.V48A	.	.	475	30	467	1	.	71
OR5P3	120066	bcgsc.ca	37	11	7847176	7847176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR5P3	NM_153445	exon1	c.T344C	p.L115P	.	.	132	5	176	2	.	69
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9362317	9362317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR7E24	NM_001079935	exon1	c.T598C	p.S200P	.	.	271	18	309	0	.	47
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56113637	56113637	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR8K1	NM_001002907	exon1	c.T123C	p.Y41Y	.	.	343	21	374	0	.	70
OXGR1	27199	bcgsc.ca	37	13	97639373	97639373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OXGR1	NM_080818	exon4	c.T641C	p.V214A	.	.	152	6	145	2	.	70
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439120	110439120	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAK3	NM_001128168	exon13	c.T1269C	p.D423D	.	.	460	239	528	0	.	1043
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9525047	9525047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAK7	NM_177990	exon8	c.A1838T	p.E613V	.	.	64	42	134	0	.	1434
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93911635	93911635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PANX1	NM_015368	exon3	c.T422C	p.F141S	.	.	234	13	272	0	.	68
PAPSS2	9060	bcgsc.ca	37	10	89487229	89487229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAPSS2	NM_001015880	exon9	c.A1069G	p.K357E	.	.	115	6	112	0	.	493
PCM1	5108	bcgsc.ca	37	8	17867174	17867174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PCM1	NM_006197	exon31	c.A5081G	p.D1694G	.	.	72	4	132	0	.	742
PCMT1	5110	bcgsc.ca	37	6	150123397	150123397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PCMT1	NM_005389	exon7	c.A740G	p.N247S	.	.	152	7	158	0	.	91
PDCD11	22984	bcgsc.ca	37	10	105187120	105187120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDCD11	NM_014976	exon21	c.A3340G	p.T1114A	.	.	125	5	110	2	.	275
PDDC1	347862	bcgsc.ca	37	11	774113	774113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDDC1	NM_182612	exon3	c.G142A	p.G48R	.	.	84	4	83	0	.	90
PDE4D	5144	bcgsc.ca	37	5	58286731	58286731	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDE4D	NM_001197219	exon10	c.823-2A>G	.	.	.	52	4	39	1	.	226
PDE6C	5146	bcgsc.ca	37	10	95380496	95380496	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDE6C	NM_006204	exon2	c.A588G	p.A196A	.	.	123	5	121	0	.	94
PDIK1L	149420	bcgsc.ca	37	1	26448915	26448915	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDIK1L	NM_152835	exon3	c.T873C	p.L291L	.	.	139	5	138	0	.	333
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	39878616	39878616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001100399	exon19	c.G2150A	p.R717Q	.	.	437	30	302	0	.	.
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28498525	28498525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDX1	NM_000209	exon2	c.C539T	p.A180V	.	.	82	66	104	0	.	514
PFN1P2	767846	ucsc.edu	37	1	144612173	144612173	+	RNA	SNP	A	A	G	rs78661306	bycluster	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	21	11	15	1	A|0.500;G|0.500	.
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211815	249211815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PGBD2	NM_170725	exon3	c.G1032A	p.L344L	.	.	386	89	169	0	.	91
PGK2	5232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49754008	49754008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PGK2	NM_138733	exon1	c.T893A	p.V298D	.	.	149	70	162	1	.	91
PIBF1	10464	bcgsc.ca	37	13	73467955	73467955	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PIBF1	NM_006346	exon11	c.A1356G	p.K452K	.	.	277	7	407	0	.	136
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186948491	186948491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLA2G4A	NM_024420	exon17	c.G2005T	p.D669Y	.	.	603	205	401	1	.	721
PLAGL1	5325	bcgsc.ca	37	6	144262614	144262614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLAGL1	NM_001080953	exon7	c.T1339C	p.S447P	.	.	67	5	90	0	.	91
PLAUR	5329	broad.mit.edu	37	19	44153266	44153266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLAUR	NM_002659	exon7	c.G784T	p.G262C	.	.	360	9	261	0	.	91
PLCB3	5331	bcgsc.ca	37	11	64026552	64026552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLCB3	NM_000932	exon13	c.C1361T	p.P454L	.	.	25	4	35	0	.	228
PLCB4	5332	bcgsc.ca	37	20	9352996	9352996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLCB4	NM_182797	exon9	c.A632G	p.E211G	.	.	265	7	379	0	.	274
PLIN4	729359	broad.mit.edu	37	19	4513439	4513439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLIN4	NM_001080400	exon3	c.G491A	p.G164E	.	.	142	4	188	0	.	68
PLXNA3	55558	bcgsc.ca	37	X	153698475	153698475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLXNA3	NM_017514	exon29	c.T4951C	p.S1651P	.	.	84	8	123	6	.	132
POLR3A	11128	bcgsc.ca	37	10	79789143	79789143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	POLR3A	NM_007055	exon1	c.A23G	p.E8G	.	.	102	5	88	1	.	90
POM121L10P	646074	bcgsc.ca	37	22	25053392	25053392	+	RNA	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	112	8	145	1	.	.
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	53104219	53104219	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_182595	exon1	c.C855T	p.L285L	.	.	142	80	80	0	.	.
PPIAL4B	653505	bcgsc.ca	37	1	147955311	147955311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001143883	exon1	c.G34A	p.V12I	.	.	1224	407	1062	4	.	.
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113518905	113518905	+	Missense_Mutation	SNP	C	C	G	rs4304271	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PPP1R3A	NM_002711	exon4	c.G2242C	p.E748Q	.	.	143	48	121	0	C|1.000;|0.000	832
PPP6R2	9701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50876004	50876004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PPP6R2	NM_001242898	exon16	c.G1753C	p.E585Q	.	.	86	33	90	0	.	92
PREB	10113	bcgsc.ca	37	2	27354898	27354898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PREB	NM_013388	exon7	c.T979C	p.Y327H	.	.	141	5	109	0	.	91
PREP	5550	bcgsc.ca	37	6	105800863	105800863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PREP	NM_002726	exon7	c.A807G	p.E269E	.	.	119	6	156	0	.	93
PRKAG3	53632	bcgsc.ca	37	2	219689087	219689087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PRKAG3	NM_017431	exon12	c.T1211C	p.L404P	.	.	79	4	150	0	.	659
PTCH1	5727	bcgsc.ca	37	9	98231057	98231057	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTCH1	NM_000264	exon14	c.T2226C	p.P742P	.	.	220	6	256	1	.	3532
PTCH2	8643	bcgsc.ca	37	1	45293178	45293178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTCH2	NM_001166292	exon15	c.T2267C	p.L756P	.	.	78	4	90	0	.	851
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11562021	11562021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTCHD2	NM_020780	exon2	c.T972G	p.D324E	.	.	84	11	97	0	.	209
PTENP1	11191	broad.mit.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	152	5	188	1	.	.
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	186648333	186648333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTGS2	NM_000963	exon3	c.C170T	p.P57L	.	.	581	35	291	0	.	227
PTMA	5757	bcgsc.ca	37	2	232576616	232576616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTMA	NM_001099285	exon3	c.A137G	p.E46G	.	.	101	6	187	2	.	226
PTPN14	5784	bcgsc.ca	37	1	214558083	214558083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTPN14	NM_005401	exon13	c.A1115G	p.N372S	.	.	277	7	132	0	.	290
PVRIG	79037	broad.mit.edu;ucsc.edu	37	7	99817335	99817335	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PVRIG	.	.	.	.	.	.	33	16	15	0	.	24
PYGO1	26108	broad.mit.edu;bcgsc.ca	37	15	55838392	55838392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PYGO1	NM_015617	exon3	c.T1089G	p.C363W	.	.	235	9	262	0	.	228
RAB11B	9230	bcgsc.ca	37	19	8467386	8467386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAB11B	NM_004218	exon4	c.T448C	p.F150L	.	.	124	5	119	0	.	227
RAB32	10981	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	146865246	146865246	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAB32	NM_006834	exon1	c.G239A	p.W80X	.	.	133	17	136	0	.	651
RAB5C	5878	bcgsc.ca	37	17	40282553	40282553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAB5C	NM_001252039	exon3	c.C67A	p.H23N	.	.	53	4	48	0	.	722
RAD17	5884	bcgsc.ca	37	5	68681880	68681880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAD17	NM_133339	exon6	c.A689G	p.N230S	.	.	242	7	179	0	.	205
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597714	36597714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAG1	NM_000448	exon2	c.G2860T	p.G954C	.	.	114	45	117	0	.	230
RAPGEF2	9693	bcgsc.ca	37	4	160252932	160252932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAPGEF2	NM_014247	exon9	c.A1243G	p.S415G	.	.	139	5	133	1	.	637
RASGRP1	10125	bcgsc.ca	37	15	38818555	38818555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RASGRP1	NM_001128602	exon3	c.A271G	p.T91A	.	.	127	6	152	0	.	697
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	48881512	48881512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	RB1,NS,Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour,0	RB1	NM_000321	exon2	c.G234A	p.W78X	.	.	235	173	247	0	.	3784
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53569525	53569525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RB1CC1	NM_001083617	exon15	c.G2864A	p.R955Q	.	.	356	16	359	0	.	170
RBM47	54502	broad.mit.edu;bcgsc.ca	37	4	40440062	40440062	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RBM47	NM_001098634	exon4	c.C849T	p.Y283Y	.	.	156	9	124	0	.	25
RBM6	10180	bcgsc.ca	37	3	50006053	50006053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RBM6	NM_005777	exon3	c.A1195G	p.T399A	.	.	127	5	133	1	.	280
RDH10	157506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	74209535	74209535	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RDH10	NM_172037	exon2	c.C396T	p.V132V	.	.	445	19	252	0	.	514
REV3L	5980	bcgsc.ca	37	6	111643850	111643850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	REV3L	NM_002912	exon26	c.A8273G	p.E2758G	.	.	206	6	275	0	.	294
RGAG1	57529	broad.mit.edu;bcgsc.ca	37	X	109695251	109695251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RGAG1	NM_020769	exon3	c.T1406C	p.M469T	.	.	137	9	174	0	.	132
RHBDL1	9028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	726998	726998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RHBDL1	NM_003961	exon3	c.C649T	p.R217C	.	.	71	12	73	0	.	90
RIMS1	22999	broad.mit.edu	37	6	73108740	73108740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RIMS1	NM_014989	exon33	c.C4804T	p.P1602S	.	.	245	9	210	0	.	144
RNASEL	6041	broad.mit.edu	37	1	182554625	182554625	+	Silent	SNP	C	C	T	rs149129827	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNASEL	NM_021133	exon2	c.G1317A	p.Q439Q	.	.	568	7	338	0	C|0.999;T|0.001	336
RNF13	11342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	149589886	149589886	+	Missense_Mutation	SNP	C	C	T	rs138683130		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF13	NM_007282	exon5	c.C266T	p.S89L	.	.	221	36	263	0	C|1.000;T|0.000	227
RNF217	154214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	125402633	125402633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF217	NM_152553	exon7	c.G659T	p.G220V	.	.	325	30	303	0	.	68
RNF32	140545	bcgsc.ca	37	7	156468393	156468393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF32	NM_001184996	exon8	c.A688G	p.T230A	.	.	138	5	124	0	.	226
RNF6	6049	broad.mit.edu;bcgsc.ca	37	13	26788012	26788012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF6	NM_183043	exon5	c.T2007C	p.C669C	.	.	183	8	242	0	.	228
RPE	6120	bcgsc.ca	37	2	210880980	210880980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RPE	NM_006916	exon3	c.A191G	p.Q64R	.	.	86	4	140	0	.	90
RPS18	6222	bcgsc.ca	37	6	33243990	33243990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RPS18	NM_022551	exon5	c.A329G	p.D110G	.	.	109	5	92	0	.	90
RUSC2	9853	bcgsc.ca	37	9	35561066	35561066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RUSC2	NM_014806	exon11	c.T4321C	p.S1441P	.	.	47	5	56	0	.	91
RYR2	6262	bcgsc.ca	37	1	237965210	237965210	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RYR2	NM_001035	exon98	c.T14145C	p.T4715T	.	.	95	4	68	0	.	158
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237905615	237905615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RYR2	NM_001035	exon80	c.A11111T	p.D3704V	.	.	364	70	219	0	.	158
RYR3	6263	bcgsc.ca	37	15	34018669	34018669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RYR3	NM_001243996	exon46	c.T6995C	p.I2332T	.	.	73	4	89	1	.	520
SBF2	81846	bcgsc.ca	37	11	9875155	9875155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SBF2	NM_030962	exon20	c.T2468C	p.I823T	.	.	237	6	362	0	.	93
SCN10A	6336	bcgsc.ca	37	3	38783856	38783856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SCN10A	NM_006514	exon13	c.A2032G	p.N678D	.	.	94	4	144	0	.	99
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165948928	165948928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SCN3A	NM_006922	exon27	c.A4643G	p.D1548G	.	.	413	204	368	0	.	141
SCN8A	6334	bcgsc.ca	37	12	52164436	52164436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SCN8A	NM_014191	exon19	c.T3614C	p.I1205T	.	.	374	9	400	0	.	29
SDHAP1	255812	bcgsc.ca	37	3	195709034	195709034	+	RNA	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	222	29	225	0	.	.
SEC24B	10427	bcgsc.ca	37	4	110447554	110447554	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SEC24B	NM_006323	exon17	c.A2964G	p.K988K	.	.	122	5	140	0	.	137
SEMA4D	10507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91991876	91991876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SEMA4D	NM_001142287	exon18	c.C1754A	p.T585N	.	.	68	20	85	2	.	92
SEPSECS	51091	bcgsc.ca	37	4	25160716	25160716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SEPSECS	NM_016955	exon2	c.A128G	p.E43G	.	.	148	11	111	2	.	90
SERGEF	26297	bcgsc.ca	37	11	18010205	18010205	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SERGEF	NM_012139	exon8	c.T783C	p.C261C	.	.	160	6	182	0	.	227
SETD2	29072	bcgsc.ca	37	3	47158200	47158200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SETD2	NM_014159	exon4	c.A4499G	p.E1500G	.	.	155	5	143	0	.	1273
SH3GL1	6455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4361758	4361758	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3GL1	NM_003025	exon10	c.G946C	p.D316H	.	.	50	42	54	0	.	659
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17787406	17787406	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3GL2	NM_003026	exon5	c.C360A	p.A120A	.	.	49	9	95	0	.	91
SH3PXD2B	285590	bcgsc.ca	37	5	171821617	171821617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3PXD2B	NM_001017995	exon4	c.A259G	p.I87V	.	.	91	4	61	0	.	94
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70333710	70333710	+	Silent	SNP	C	C	T	rs141694314	by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SHANK2	NM_133266	exon10	c.G924A	p.P308P	.	.	125	31	151	0	C|0.999;T|0.000	94
SIGLEC1	6614	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3673312	3673312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SIGLEC1	NM_023068	exon15	c.C3886T	p.H1296Y	.	.	71	7	41	0	.	167
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3673732	3673732	+	Silent	SNP	G	G	A	rs144602570	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SIGLEC1	NM_023068	exon14	c.C3555T	p.G1185G	.	.	60	28	30	0	G|0.999;A|0.001	167
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66270184	66270184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC16A6	NM_001174166	exon4	c.G260A	p.R87H	.	.	57	20	50	0	.	90
SLC24A4	123041	bcgsc.ca	37	14	92949176	92949176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC24A4	NM_153646	exon13	c.A1408G	p.I470V	.	.	66	4	80	0	.	93
SLC25A17	10478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41173261	41173261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC25A17	NM_006358	exon6	c.A568G	p.K190E	.	.	195	73	262	0	.	90
SLC25A18	83733	bcgsc.ca	37	22	18065362	18065362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC25A18	NM_031481	exon6	c.A233G	p.E78G	.	.	59	4	91	0	.	90
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9097670	9097670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC2A5	NM_003039	exon12	c.T1481C	p.L494P	.	.	140	14	148	0	.	517
SLC31A1	1317	bcgsc.ca	37	9	116022568	116022568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC31A1	NM_001859	exon5	c.T388C	p.F130L	.	.	180	7	233	1	.	90
SLC35G3	146861	broad.mit.edu	37	17	33521194	33521194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_152462	exon1	c.C133A	p.L45M	.	.	195	7	151	3	.	.
SLC37A1	54020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43962522	43962522	+	Silent	SNP	C	C	T	rs141486944	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC37A1	NM_018964	exon8	c.C495T	p.N165N	.	.	168	34	80	0	C|0.996;T|0.004	90
SLC4A3	6508	bcgsc.ca	37	2	220502502	220502502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC4A3	NM_201574	exon17	c.A2816G	p.K939R	.	.	133	6	249	9	.	157
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	28530206	28530206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC6A4	NM_001045	exon14	c.C1802T	p.P601L	.	.	196	13	135	0	.	94
SLCO1A2	6579	bcgsc.ca	37	12	21471750	21471750	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLCO1A2	NM_134431	exon4	c.T168C	p.S56S	.	.	208	7	185	0	.	157
SLFN11	91607	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	33680372	33680372	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLFN11	NM_152270	exon4	c.T1905C	p.P635P	.	.	697	34	720	1	.	159
SLITRK5	26050	bcgsc.ca	37	13	88330513	88330513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLITRK5	NM_015567	exon2	c.A2870G	p.Q957R	.	.	80	6	119	0	.	94
SMTNL1	219537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57317551	57317551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SMTNL1	NM_001105565	exon7	c.T1451G	p.V484G	.	.	120	53	137	0	.	23
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	17833732	17833732	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SNX13	NM_015132	exon26	c.G2811A	p.K937K	.	.	707	37	463	0	.	650
SOWAHB	345079	broad.mit.edu;bcgsc.ca	37	4	77817401	77817401	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001029870	exon1	c.G1602A	p.K534K	.	.	136	7	114	0	.	.
SOX2	6657	hgsc.bcm.edu	37	3	181431636	181431636	+	RNA	DEL	T	T	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SOX2	.	.	.	.	.	.	444	145	458	0	.	650
SPAST	6683	bcgsc.ca	37	2	32312604	32312604	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPAST	NM_199436	exon2	c.T459C	p.I153I	.	.	100	5	93	0	.	153
SPATA13	221178	ucsc.edu	37	13	24871700	24871700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPATA13	NM_001166271	exon11	c.T3410C	p.L1137P	.	.	132	1	141	0	.	229
SPATA20	64847	bcgsc.ca	37	17	48628870	48628870	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPATA20	NM_001258373	exon13	c.1397-2A>G	.	.	.	86	4	69	0	.	90
SPHK2	56848	broad.mit.edu	37	19	49131994	49131994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPHK2	NM_020126	exon7	c.G929A	p.R310Q	.	.	113	7	75	0	.	658
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47677798	47677798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPOP	NM_001007228	exon10	c.T1067A	p.L356Q	.	.	146	69	103	0	.	660
SPTA1	6708	bcgsc.ca	37	1	158592847	158592847	+	Missense_Mutation	SNP	G	G	T	rs78394850	byfrequency;alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPTA1	NM_003126	exon43	c.C6046A	p.R2016S	.	.	547	15	298	0	G|0.959;A|0.041	142
SREBF1	6720	bcgsc.ca	37	17	17718599	17718599	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SREBF1	NM_001005291	exon14	c.T2518C	p.L840L	.	.	103	5	79	0	.	91
SRSF7	6432	bcgsc.ca	37	2	38977250	38977250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SRSF7	NM_001195446	exon2	c.A115G	p.T39A	.	.	201	7	165	1	.	226
STPG2	285555	bcgsc.ca	37	4	98865073	98865073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_174952	exon8	c.A1019G	p.K340R	.	.	208	6	248	1	.	.
STXBP6	29091	bcgsc.ca	37	14	25443923	25443923	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	STXBP6	NM_014178	exon2	c.T102C	p.P34P	.	.	164	6	169	0	.	90
SUV39H2	79723	broad.mit.edu	37	10	14944455	14944455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SUV39H2	NM_001193424	exon6	c.A1177G	p.R393G	.	.	519	10	383	2	.	290
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	58467323	58467323	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYCP2	NM_014258	exon23	c.C2086T	p.Q696X	.	.	687	327	502	1	.	525
SYNE1	23345	bcgsc.ca	37	6	152749391	152749391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNE1	NM_033071	exon37	c.G4946A	p.R1649K	.	.	60	4	51	0	.	607
SYNE1	23345	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152631939	152631939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNE1	NM_182961	exon88	c.A16780C	p.T5594P	.	.	342	33	363	2	.	607
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95918595	95918595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_152592	exon6	c.G1263A	p.Q421Q	.	.	112	29	118	0	.	.
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34067440	34067440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNJ1	NM_203446	exon5	c.G749A	p.R250Q	.	.	312	105	174	0	.	232
SYNRG	11276	bcgsc.ca	37	17	35930745	35930745	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNRG	NM_007247	exon10	c.T1338C	p.P446P	.	.	87	4	63	1	.	92
SYTL3	94120	bcgsc.ca	37	6	159178283	159178283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYTL3	NM_001242384	exon15	c.A1178G	p.Q393R	.	.	53	6	41	0	.	90
TADA2B	93624	bcgsc.ca	37	4	7056552	7056552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TADA2B	NM_152293	exon2	c.T1034C	p.L345P	.	.	89	6	72	0	.	68
TANGO6	79613	bcgsc.ca	37	16	68961964	68961964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_024562	exon13	c.A2621G	p.E874G	.	.	54	4	75	0	.	.
TCTN3	26123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97447351	97447351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TCTN3	NM_015631	exon4	c.A625T	p.R209W	.	.	208	117	141	0	.	22
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27228230	27228230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TEK	NM_000459	exon22	c.G3227T	p.R1076L	.	.	99	27	105	0	.	1584
TEKT4P2	100132288	broad.mit.edu	37	21	9907198	9907198	+	RNA	SNP	C	C	T	rs71263208		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	20	3	19	1	C|0.500;T|0.500	.
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167643791	167643791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001122679	exon22	c.A4070G	p.N1357S	.	.	267	98	219	0	.	.
TEX33	339669	bcgsc.ca	37	22	37395951	37395951	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001163857	exon4	c.T564C	p.P188P	.	.	167	5	236	1	.	.
TGFBR3	7049	bcgsc.ca	37	1	92174313	92174313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TGFBR3	NM_003243	exon14	c.T2194C	p.S732P	.	.	161	6	173	1	.	93
TGFBR3	7049	broad.mit.edu;bcgsc.ca	37	1	92187585	92187585	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TGFBR3	NM_001195684	exon9	c.T1002C	p.N334N	.	.	213	14	241	0	.	93
THUMPD3	25917	bcgsc.ca	37	3	9416266	9416266	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	THUMPD3	NM_001114092	exon5	c.C874A	p.R292R	.	.	171	5	194	0	.	227
TICRR	90381	bcgsc.ca	37	15	90142695	90142695	+	Missense_Mutation	SNP	A	A	G	rs182831524		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_152259	exon8	c.A2041G	p.K681E	.	.	75	4	75	0	A|0.999;G|0.000	.
TLL2	7093	bcgsc.ca	37	10	98129988	98129988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TLL2	NM_012465	exon20	c.A2747G	p.E916G	.	.	136	8	125	2	.	93
TMC5	79838	broad.mit.edu;bcgsc.ca	37	16	19483451	19483451	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMC5	NM_001105249	exon11	c.G1824A	p.T608T	.	.	303	9	243	1	.	91
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76120679	76120679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMC6	NM_001127198	exon8	c.C817A	p.P273T	.	.	60	22	41	0	.	90
TMED10	10972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75614379	75614379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMED10	NM_006827	exon3	c.A399C	p.K133N	.	.	130	58	168	1	.	90
TMEM101	84336	bcgsc.ca	37	17	42089509	42089509	+	Silent	SNP	A	A	G	rs150743650	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM101	NM_032376	exon4	c.T561C	p.Y187Y	.	.	90	4	91	0	A|0.998;G|0.002	91
TMEM108	66000	bcgsc.ca	37	3	133099867	133099867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM108	NM_023943	exon4	c.A1312G	p.T438A	.	.	126	5	136	0	.	94
TMEM185A	84548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148690383	148690383	+	Silent	SNP	C	C	T	rs150113040	bycluster;by1000genomes	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM185A	NM_032508	exon3	c.G354A	p.P118P	.	.	350	81	397	0	C|1.000;T|0.000	131
TMEM53	79639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45120780	45120780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM53	NM_024587	exon3	c.G285T	p.E95D	.	.	67	56	108	0	.	92
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255314	156255314	+	Silent	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM79	NM_032323	exon2	c.A297T	p.P99P	.	.	192	53	78	0	.	90
TMEM8C	389827	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136379801	136379801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM8C	NM_001080483	exon5	c.C623A	p.P208Q	.	.	89	39	116	1	.	68
TNIP3	79931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122078361	122078361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TNIP3	NM_001244764	exon7	c.G482T	p.R161I	.	.	364	131	335	1	.	91
TNXB	7148	hgsc.bcm.edu;bcgsc.ca	37	6	32010105	32010105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TNXB	NM_019105	exon41	c.T12239G	p.F4080C	.	.	1240	314	1140	2	.	90
TOM1	10043	bcgsc.ca	37	22	35713942	35713942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TOM1	NM_001135732	exon2	c.A125G	p.E42G	.	.	95	5	125	1	.	91
TPI1P2	286016	ucsc.edu	37	7	128696212	128696212	+	RNA	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	66	24	73	0	.	.
TPP1	1200	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6638385	6638385	+	Splice_Site	SNP	C	C	T	rs56144125	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TPP1	NM_000391	exon7	c.509-1G>A	.	.	.	124	51	144	0	C|0.999;G|0.001;T|0.000	90
TRANK1	9881	bcgsc.ca	37	3	36898679	36898679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRANK1	NM_014831	exon12	c.A2402G	p.K801R	.	.	77	4	89	0	.	24
TRIM31	11074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30071337	30071337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRIM31	NM_007028	exon9	c.G1254T	p.W418C	.	.	65	34	71	1	.	658
TRIM44	54765	bcgsc.ca	37	11	35685066	35685066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRIM44	NM_017583	exon1	c.A407G	p.E136G	.	.	180	6	222	0	.	227
TRIM5	85363	bcgsc.ca	37	11	5686848	5686848	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRIM5	NM_033092	exon7	c.C933A	p.G311G	.	.	70	4	72	0	.	227
TRIM6-TRIM34	445372	broad.mit.edu;bcgsc.ca	37	11	5663672	5663672	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRIM6-TRIM34	NM_001003819	exon12	c.T1872C	p.V624V	.	.	83	4	113	0	.	45
TRMT2A	27037	bcgsc.ca	37	22	20104420	20104420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRMT2A	NM_001257994	exon1	c.A10G	p.N4D	.	.	212	6	298	0	.	153
TRPV4	59341	bcgsc.ca	37	12	110234341	110234341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TRPV4	NM_021625	exon7	c.A1321G	p.S441G	.	.	76	4	66	0	.	94
TSPYL5	85453	broad.mit.edu;bcgsc.ca	37	8	98289467	98289467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TSPYL5	NM_033512	exon1	c.G606A	p.M202I	.	.	97	7	59	0	.	136
TTC39B	158219	bcgsc.ca	37	9	15225973	15225973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTC39B	NM_001168340	exon3	c.T313C	p.F105L	.	.	67	4	98	0	.	187
TTC7B	145567	bcgsc.ca	37	14	91123533	91123533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTC7B	NM_001010854	exon11	c.G1326T	p.M442I	.	.	65	4	65	1	.	92
TTLL13	440307	bcgsc.ca	37	15	90802024	90802024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTLL13	NM_001029964	exon10	c.T1217C	p.V406A	.	.	150	6	177	2	.	44
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179611420	179611420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTN	NM_133379	exon46	c.A15707T	p.N5236I	.	.	383	15	311	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179510675	179510675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTN	NM_001267550	exon217	c.T40380A	p.D13460E	.	.	604	30	437	0	.	636
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40766524	40766524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TUBG1	NM_001070	exon10	c.G1007A	p.S336N	.	.	182	17	158	0	.	91
TUSC1	286319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	25677928	25677928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TUSC1	NM_001004125	exon1	c.G392A	p.R131Q	.	.	37	8	26	0	.	90
UBE2J1	51465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90053437	90053437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UBE2J1	NM_016021	exon2	c.G70T	p.D24Y	.	.	82	64	96	0	.	226
UBR1	197131	bcgsc.ca	37	15	43290424	43290424	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UBR1	NM_174916	exon33	c.A3699G	p.A1233A	.	.	87	4	73	0	.	91
UBR2	23304	bcgsc.ca	37	6	42625812	42625812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UBR2	NM_015255	exon27	c.A2923G	p.T975A	.	.	267	7	252	1	.	94
UCKL1	54963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	62577849	62577849	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UCKL1	NM_017859	exon2	c.G261A	p.W87X	.	.	128	20	91	0	.	115
UCP1	7350	bcgsc.ca	37	4	141481095	141481095	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UCP1	NM_021833	exon6	c.A879G	p.K293K	.	.	186	7	181	1	.	91
UNC13C	440279	bcgsc.ca	37	15	54624286	54624286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UNC13C	NM_001080534	exon13	c.A4471G	p.R1491G	.	.	181	6	169	0	.	51
URM1	81605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131140322	131140322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	URM1	NM_001265582	exon2	c.G43A	p.A15T	.	.	373	39	452	1	.	90
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49145886	49145886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	USP19	NM_001199161	exon27	c.C4114T	p.R1372W	.	.	49	14	56	0	.	663
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6189266	6189266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	USP42,NS,malignant_melanoma,-1	USP42	NM_032172	exon13	c.1439delC	p.S480fs	.	.	280	57	207	0	.	659
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	144765510	144765510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UTRN	NM_007124	exon13	c.G1606T	p.E536X	.	.	42	29	51	0	.	95
VANGL1	81839	bcgsc.ca	37	1	116202321	116202321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VANGL1	NM_001172411	exon3	c.A131G	p.K44R	.	.	142	5	179	0	.	226
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	108315394	108315394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VAV3	NM_006113	exon5	c.A518C	p.Y173S	.	.	179	16	185	0	.	1339
VDAC3	7419	bcgsc.ca	37	8	42256232	42256232	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VDAC3	NM_001135694	exon5	c.A123G	p.E41E	.	.	94	4	124	0	.	91
VPS45	11311	broad.mit.edu	37	1	150039963	150039963	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VPS45	NM_007259	exon1	c.G49C	p.D17H	.	.	413	7	244	0	.	91
VPS54	51542	bcgsc.ca	37	2	64171787	64171787	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VPS54	NM_016516	exon10	c.T1248C	p.C416C	.	.	162	5	129	0	.	90
VWA8	23078	bcgsc.ca	37	13	42161648	42161648	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_015058	exon42	c.G5271A	p.Q1757Q	.	.	158	6	198	0	.	.
WBP2NL	164684	bcgsc.ca	37	22	42422768	42422768	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	WBP2NL	NM_152613	exon6	c.515-2A>G	.	.	.	67	6	95	1	.	92
WDFY1	57590	bcgsc.ca	37	2	224743433	224743433	+	Silent	SNP	T	T	C	rs139287584	byfrequency	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	WDFY1	NM_020830	exon12	c.A1188G	p.T396T	.	.	113	6	186	1	T|0.998;C|0.002	226
WDR31	114987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116082738	116082738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	WDR31	NM_001012361	exon9	c.C679G	p.P227A	.	.	121	61	142	0	.	90
XKR9	389668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	71646369	71646369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	XKR9	NM_001011720	exon5	c.A832G	p.I278V	.	.	895	44	544	0	.	92
XRCC5	7520	bcgsc.ca	37	2	216983770	216983770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	XRCC5	NM_021141	exon5	c.A373G	p.K125E	.	.	147	7	223	0	.	970
XRN2	22803	bcgsc.ca	37	20	21314807	21314807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	XRN2	NM_012255	exon13	c.A1217G	p.K406R	.	.	195	6	175	1	.	515
ZC2HC1A	51101	bcgsc.ca	37	8	79627506	79627506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_016010	exon8	c.C755T	p.P252L	.	.	82	4	60	0	.	.
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	453	6	237	1	.	515
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88934568	88934568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZCCHC6	NM_024617	exon15	c.A3046T	p.I1016F	.	.	90	19	87	0	.	92
ZEB2	9839	broad.mit.edu;bcgsc.ca	37	2	145147427	145147427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZEB2	NM_014795	exon10	c.C3236A	p.S1079Y	.	.	67	6	50	0	.	297
ZFHX3	463	bcgsc.ca	37	16	72832414	72832414	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZFHX3	NM_006885	exon9	c.T4167C	p.P1389P	.	.	174	8	183	4	.	72
ZFHX3	463	bcgsc.ca	37	16	72993323	72993323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZFHX3	NM_006885	exon2	c.A722G	p.N241S	.	.	83	4	124	0	.	72
ZNF180	7733	bcgsc.ca	37	19	45001373	45001373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF180	NM_013256	exon2	c.A95G	p.D32G	.	.	59	4	49	0	.	92
ZNF202	7753	bcgsc.ca	37	11	123601520	123601520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF202	NM_003455	exon4	c.A77G	p.D26G	.	.	218	8	260	0	.	91
ZNF239	8187	broad.mit.edu	37	10	44053281	44053281	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF239	NM_001099284	exon3	c.A247T	p.K83X	.	.	480	10	350	0	.	90
ZNF252P	286101	bcgsc.ca	37	8	146201891	146201891	+	RNA	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	.	.	.	.	.	.	59	4	47	0	.	.
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20003387	20003387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF253	NM_021047	exon4	c.G1331A	p.R444K	.	.	233	15	122	0	.	90
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20003414	20003414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF253	NM_021047	exon4	c.A1358G	p.K453R	.	.	316	28	150	0	.	90
ZNF263	10127	bcgsc.ca	37	16	3334003	3334003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF263	NM_005741	exon1	c.T185C	p.L62P	.	.	99	8	88	4	.	94
ZNF286A	57335	bcgsc.ca	37	17	15609807	15609807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF286A	NM_020652	exon4	c.T233C	p.V78A	.	.	156	5	117	0	.	90
ZNF354A	6940	broad.mit.edu	37	5	178139857	178139857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF354A	NM_005649	exon5	c.T1022C	p.L341P	.	.	292	6	273	1	.	93
ZNF43	7594	broad.mit.edu;bcgsc.ca	37	19	21992535	21992535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF43	NM_001256653	exon4	c.A331G	p.R111G	.	.	274	8	129	0	.	154
ZNF484	83744	bcgsc.ca	37	9	95609367	95609367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF484	NM_001261458	exon4	c.A1708G	p.S570G	.	.	223	6	232	0	.	90
ZNF570	148268	broad.mit.edu;bcgsc.ca	37	19	37975151	37975151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF570	NM_144694	exon5	c.G627C	p.K209N	.	.	136	6	84	0	.	91
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53008031	53008031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001099694	exon5	c.G187A	p.V63M	.	.	101	47	89	0	.	.
ZNF625	90589	broad.mit.edu;bcgsc.ca	37	19	12256597	12256597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF625	NM_145233	exon4	c.A634G	p.T212A	.	.	184	8	229	4	.	90
ZNF69	7620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12014498	12014498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF69	NM_021915	exon2	c.G132C	p.R44S	.	.	679	386	385	0	.	91
ZNF699	374879	bcgsc.ca	37	19	9406495	9406495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF699	NM_198535	exon5	c.A1585G	p.K529E	.	.	126	6	145	1	.	68
ZNF783	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148963616	148963616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001195220	exon2	c.G215T	p.G72V	.	.	68	19	49	0	.	.
ZNF813	126017	broad.mit.edu;bcgsc.ca	37	19	53995075	53995075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF813	NM_001004301	exon4	c.A1589G	p.K530R	.	.	310	18	238	1	.	67
ZNF850	342892	bcgsc.ca	37	19	37239999	37239999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001193552	exon5	c.A1943G	p.Q648R	.	.	62	4	42	0	.	.
ZNF98	148198	broad.mit.edu	37	19	22575373	22575373	+	Missense_Mutation	SNP	C	C	T	rs684900	bycluster	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF98	NM_001098626	exon4	c.G664A	p.A222T	.	.	1131	8	828	1	C|0.500;T|0.500	24
ZSCAN30	100101467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	32843982	32843982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZSCAN30	NM_001166012	exon3	c.G335A	p.R112Q	.	.	352	17	223	0	.	68
