Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	broad.mit.edu;bcgsc.ca	37	12	9262481	9262481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	A2M	NM_000014	exon6	c.T655C	p.F219L	.	.	249	7	218	0	.	515
ABLIM1	3983	broad.mit.edu;bcgsc.ca	37	10	116201514	116201514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ABLIM1	NM_002313	exon18	c.T1965C	p.S655S	.	.	198	7	209	0	.	153
ABR	29	bcgsc.ca	37	17	915169	915169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ABR	NM_021962	exon19	c.A2018G	p.K673R	.	.	109	6	124	0	.	91
ACAD9	28976	bcgsc.ca	37	3	128612416	128612416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ACAD9	NM_014049	exon3	c.A263G	p.D88G	.	.	120	5	91	0	.	92
ACTN2	88	bcgsc.ca	37	1	236850083	236850083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ACTN2	NM_001103	exon1	c.A110G	p.E37G	.	.	58	4	43	0	.	95
AGFG2	3268	bcgsc.ca	37	7	100161569	100161569	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AGFG2	NM_006076	exon10	c.T1284C	p.L428L	.	.	70	4	61	0	.	90
AGO1	26523	broad.mit.edu	37	1	36358708	36358708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_012199	exon4	c.A341G	p.E114G	.	.	147	6	102	1	.	.
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106978191	106978191	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AIM1	NM_001624	exon6	c.3494+1G>T	.	.	.	114	26	142	1	.	139
AJAP1	55966	bcgsc.ca	37	1	4832491	4832491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AJAP1	NM_018836	exon4	c.T1069C	p.S357P	.	.	81	4	60	0	.	515
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105464456	105464456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALDH1L2	NM_001034173	exon3	c.T320C	p.F107S	.	.	335	62	307	0	.	91
ALMS1	7840	bcgsc.ca	37	2	73678776	73678776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon8	c.T5119C	p.S1707P	.	.	154	6	145	1	.	142
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73800105	73800105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon16	c.C11098T	p.H3700Y	.	.	153	18	138	0	.	142
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	73677972	73677972	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon8	c.C4315T	p.Q1439X	.	.	246	23	304	0	.	142
AMPD3	272	bcgsc.ca	37	11	10517258	10517258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AMPD3	NM_000480	exon9	c.A1435G	p.I479V	.	.	101	5	94	0	.	291
ANKH	56172	bcgsc.ca	37	5	14746034	14746034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ANKH	NM_054027	exon7	c.A860G	p.H287R	.	.	50	4	38	1	.	91
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33567266	33567266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001244752	exon14	c.G2719T	p.A907S	.	.	436	59	372	0	.	.
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	22297639	22297639	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ANO5	NM_001142649	exon21	c.2412-1G>-	.	.	.	287	31	200	0	.	515
AP1M2	10053	bcgsc.ca	37	19	10689635	10689635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AP1M2	NM_005498	exon8	c.A821G	p.K274R	.	.	116	6	126	0	.	92
ARF3	377	bcgsc.ca	37	12	49333869	49333869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ARF3	NM_001659	exon3	c.A170G	p.E57G	.	.	282	11	276	2	.	227
ARHGEF12	23365	bcgsc.ca	37	11	120329888	120329888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ARHGEF12	NM_015313	exon26	c.T2386C	p.F796L	.	.	140	5	127	1	.	661
ARMCX3	51566	bcgsc.ca	37	X	100880926	100880926	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ARMCX3	NM_016607	exon5	c.A957G	p.E319E	.	.	136	5	77	0	.	131
ATP11C	286410	broad.mit.edu	37	X	138899038	138899038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ATP11C	NM_001010986	exon4	c.T311C	p.V104A	.	.	426	8	277	0	.	198
ATP6V0A4	50617	bcgsc.ca	37	7	138394533	138394533	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ATP6V0A4	NM_130841	exon20	c.T2265C	p.S755S	.	.	137	5	116	1	.	91
ATP6V0A4	50617	bcgsc.ca	37	7	138418947	138418947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ATP6V0A4	NM_130841	exon15	c.A1625G	p.K542R	.	.	236	6	223	0	.	91
ATXN7L1	222255	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105254791	105254791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ATXN7L1	NM_020725	exon10	c.A1990G	p.T664A	.	.	466	82	402	1	.	90
AUTS2	26053	ucsc.edu	37	7	70255138	70255138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AUTS2	NM_015570	exon19	c.A2936T	p.E979V	.	.	50	3	43	0	.	92
AXIN2	8313	broad.mit.edu;bcgsc.ca	37	17	63532595	63532595	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AXIN2	NM_004655	exon8	c.C1984T	p.L662L	.	.	123	18	57	0	.	658
BAK1	578	bcgsc.ca	37	6	33545376	33545376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BAK1	NM_001188	exon2	c.T6C	p.A2A	.	.	61	4	62	0	.	638
BCDIN3D	144233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50236856	50236856	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BCDIN3D	NM_181708	exon1	c.G15T	p.T5T	.	.	88	16	55	0	.	69
BOLA1	51027	broad.mit.edu	37	1	149871795	149871795	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BOLA1	NM_016074	exon2	c.G183T	p.P61P	.	.	96	8	55	1	.	69
BPNT1	10380	ucsc.edu	37	1	220231276	220231276	+	RNA	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BPNT1	.	.	.	.	.	.	238	2	165	0	.	91
BRD8	10902	bcgsc.ca	37	5	137497828	137497828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BRD8	NM_006696	exon17	c.T2314C	p.C772R	.	.	154	5	131	0	.	91
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	75037157	75037157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C1orf173	NM_001002912	exon14	c.G4237T	p.E1413X	.	.	299	41	358	0	.	94
C1orf87	127795	bcgsc.ca	37	1	60505806	60505806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C1orf87	NM_152377	exon5	c.T530C	p.L177P	.	.	131	5	101	0	.	154
C2orf44	80304	bcgsc.ca	37	2	24260954	24260954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C2orf44	NM_025203	exon2	c.T1411C	p.F471L	.	.	196	6	168	1	.	154
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135413022	135413022	+	Missense_Mutation	SNP	C	C	T	rs182716958	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C9orf171	NM_207417	exon5	c.C667T	p.R223W	.	.	138	29	124	0	C|0.865;A|0.135	157
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181688911	181688911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CACNA1E	NM_001205293	exon13	c.G1663A	p.V555M	.	.	445	44	360	1	.	95
CACNA2D2	9254	ucsc.edu	37	3	50513549	50513549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CACNA2D2	NM_001174051	exon2	c.G288T	p.E96D	.	.	44	4	23	0	.	278
CACNB3	784	bcgsc.ca	37	12	49220151	49220151	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CACNB3	NM_000725	exon10	c.G744A	p.A248A	.	.	142	5	118	0	.	90
CASQ2	845	bcgsc.ca	37	1	116269670	116269670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CASQ2	NM_001232	exon6	c.T680C	p.I227T	.	.	165	7	141	0	.	91
CCBE1	147372	bcgsc.ca	37	18	57136808	57136808	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CCBE1	NM_133459	exon4	c.A297G	p.E99E	.	.	76	4	68	0	.	93
CCBL1	883	bcgsc.ca	37	9	131604978	131604978	+	Silent	SNP	G	G	A	rs138189842		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CCBL1	NM_001122672	exon3	c.C156T	p.H52H	.	.	160	7	164	0	G|0.998;A|0.002	91
CCDC155	147872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49920647	49920647	+	Silent	SNP	C	C	A	rs182291239	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CCDC155	NM_144688	exon20	c.C1569A	p.I523I	.	.	137	30	105	0	C|0.999;T|0.000	69
CCDC169-SOHLH2	100526761	bcgsc.ca	37	13	36748696	36748696	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001198910	exon13	c.A1029G	p.E343E	.	.	244	6	234	0	.	.
CCDC180	0	bcgsc.ca	37	9	100105638	100105638	+	Missense_Mutation	SNP	A	A	G	rs146215337		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_020893	exon19	c.A2423G	p.E808G	.	.	87	4	77	0	A|1.000;G|0.000	.
CCDC78	124093	bcgsc.ca	37	16	773897	773897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CCDC78	NM_001031737	exon11	c.A1093G	p.R365G	.	.	264	7	184	0	.	91
CD19	930	bcgsc.ca	37	16	28943333	28943333	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CD19	NM_001178098	exon1	c.T12C	p.P4P	.	.	100	5	71	1	.	92
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103430853	103430853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CDC42BPB	NM_006035	exon19	c.C2712A	p.N904K	.	.	60	13	58	0	.	581
CDH23	64072	bcgsc.ca	37	10	73490230	73490230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CDH23	NM_022124	exon30	c.T3584C	p.I1195T	.	.	65	4	70	0	.	563
CDR2L	30850	bcgsc.ca	37	17	72984215	72984215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_014603	exon1	c.A77G	p.Q26R	.	.	75	5	49	0	.	.
CEACAM4	1089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42132051	42132051	+	Missense_Mutation	SNP	G	G	T	rs199959927	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CEACAM4	NM_001817	exon2	c.C348A	p.D116E	.	.	590	108	540	0	G|0.999;A|0.001	90
CEBPZ	10153	broad.mit.edu	37	2	37443288	37443288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CEBPZ	NM_005760	exon8	c.T2375C	p.L792P	.	.	652	9	625	0	.	91
CEP63	80254	broad.mit.edu	37	3	134280274	134280274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CEP63	NM_025180	exon16	c.A2009G	p.E670G	.	.	623	9	617	0	.	493
CEP78	84131	broad.mit.edu	37	9	80855038	80855038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CEP78	NM_001098802	exon2	c.T353C	p.I118T	.	.	320	7	271	0	.	69
CHI3L2	1117	bcgsc.ca	37	1	111778751	111778751	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CHI3L2	NM_004000	exon7	c.A711G	p.R237R	.	.	183	9	156	2	.	514
CHM	1121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85218969	85218969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CHM	NM_000390	exon5	c.G403C	p.D135H	.	.	320	63	254	1	.	131
CKAP2	26586	bcgsc.ca	37	13	53035697	53035697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CKAP2	NM_001098525	exon4	c.T739C	p.S247P	.	.	119	5	119	0	.	92
CLCC1	23155	broad.mit.edu;bcgsc.ca	37	1	109482289	109482289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CLCC1	NM_001048210	exon9	c.C1010A	p.P337Q	.	.	267	9	271	0	.	91
CLDN6	9074	bcgsc.ca	37	16	3066001	3066001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CLDN6	NM_021195	exon2	c.A22G	p.I8V	.	.	158	6	144	0	.	90
CNBD2	140894	broad.mit.edu;bcgsc.ca	37	20	34599098	34599098	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_080834	exon10	c.T1188C	p.N396N	.	.	195	6	219	0	.	.
CNOT1	23019	bcgsc.ca	37	16	58590839	58590839	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CNOT1	NM_206999	exon19	c.T2391C	p.P797P	.	.	96	5	116	6	.	95
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139838990	139838990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	COL22A1	NM_152888	exon6	c.G880T	p.A294S	.	.	138	35	121	0	.	103
COMMD6	170622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	76111799	76111799	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	COMMD6	NM_203497	exon3	c.54+1G>T	.	.	.	78	13	63	0	.	90
CPEB1	64506	bcgsc.ca	37	15	83218217	83218217	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CPEB1	NM_030594	exon9	c.T1392C	p.Y464Y	.	.	158	5	215	1	.	136
CRISPLD1	83690	bcgsc.ca	37	8	75925215	75925215	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CRISPLD1	NM_031461	exon4	c.T468C	p.C156C	.	.	206	6	249	2	.	91
CROT	54677	broad.mit.edu	37	7	87005189	87005189	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CROT	NM_001143935	exon10	c.T880C	p.L294L	.	.	430	8	468	2	.	280
CSMD1	64478	bcgsc.ca	37	8	2964068	2964068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CSMD1	NM_033225	exon46	c.T6931C	p.S2311P	.	.	131	5	140	0	.	86
CSMD3	114788	broad.mit.edu;bcgsc.ca	37	8	113402913	113402913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CSMD3	NM_198123	exon36	c.C5914T	p.P1972S	.	.	123	6	98	0	.	1132
CUL7	9820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43012996	43012996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CUL7	NM_001168370	exon15	c.G3259A	p.D1087N	.	.	125	9	112	0	.	229
CUL9	23113	bcgsc.ca	37	6	43155654	43155654	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CUL9	NM_015089	exon7	c.A1785G	p.E595E	.	.	134	7	76	0	.	529
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156768087	156768087	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CYFIP2	NM_001037332	exon23	c.G2595T	p.R865R	.	.	251	42	245	0	.	22
DACT1	51339	bcgsc.ca	37	14	59107554	59107554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DACT1	NM_016651	exon2	c.A446G	p.E149G	.	.	183	6	162	0	.	291
DCUN1D4	23142	bcgsc.ca	37	4	52757951	52757951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DCUN1D4	NM_015115	exon7	c.A440G	p.K147R	.	.	112	5	79	0	.	92
DDX23	9416	broad.mit.edu	37	12	49233833	49233833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DDX23	NM_004818	exon4	c.A377G	p.K126R	.	.	608	8	548	0	.	539
DGKG	1608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185986694	185986694	+	Missense_Mutation	SNP	C	C	G	rs199552752	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DGKG	NM_001346	exon12	c.G1012C	p.A338P	.	.	63	6	54	0	.	714
DNAH10	196385	bcgsc.ca	37	12	124265825	124265825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DNAH10	NM_207437	exon6	c.A637G	p.R213G	.	.	134	5	106	0	.	95
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124387605	124387605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DNAH10	NM_207437	exon56	c.G9406A	p.E3136K	.	.	96	19	112	0	.	95
DNAH1	25981	bcgsc.ca	37	3	52409406	52409406	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DNAH1	NM_015512	exon45	c.C7136G	p.S2379C	.	.	68	4	62	0	.	67
DNAI2	64446	bcgsc.ca	37	17	72281306	72281306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DNAI2	NM_001172810	exon3	c.A311G	p.E104G	.	.	60	4	72	0	.	92
DOCK2	1794	bcgsc.ca	37	5	169468097	169468097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DOCK2	NM_004946	exon37	c.A3704G	p.D1235G	.	.	166	6	138	1	.	97
DOCK3	1795	bcgsc.ca	37	3	51418634	51418634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DOCK3	NM_004947	exon53	c.A5737G	p.T1913A	.	.	173	5	128	0	.	22
DOPEY1	23033	bcgsc.ca	37	6	83823140	83823140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DOPEY1	NM_015018	exon7	c.G780T	p.Q260H	.	.	132	5	195	0	.	155
DPEP2	64174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68027109	68027109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DPEP2	NM_022355	exon2	c.C7A	p.P3T	.	.	68	17	47	0	.	91
DPPA2P3	100128023	bcgsc.ca	37	3	193711525	193711525	+	RNA	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	198	6	182	0	.	.
DUSP15	128853	broad.mit.edu	37	20	30452783	30452783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DUSP15	NM_080611	exon4	c.C161A	p.P54Q	.	.	172	6	174	0	.	227
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	25898461	25898461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EBF2	NM_022659	exon3	c.A346C	p.S116R	.	.	647	62	562	0	.	26
EDA	1896	ucsc.edu	37	X	68836288	68836288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EDA	NM_001005613	exon1	c.T136C	p.F46L	.	.	61	5	27	0	.	195
EGR3	1960	broad.mit.edu	37	8	22548132	22548132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EGR3	NM_004430	exon2	c.C1018A	p.R340S	.	.	199	10	145	2	.	90
EGR4	1961	hgsc.bcm.edu	37	2	73518960	73518960	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EGR4	NM_001965	exon2	c.C1395T	p.R465R	.	.	11	7	2	0	.	90
EIF4G2	1982	bcgsc.ca	37	11	10821869	10821869	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EIF4G2	NM_001172705	exon18	c.T1887C	p.C629C	.	.	189	6	144	0	.	91
EP300	2033	bcgsc.ca	37	22	41523736	41523736	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EP300	NM_001429	exon4	c.A1152G	p.S384S	.	.	92	5	98	0	.	2011
EPB41L1	2036	bcgsc.ca	37	20	34778579	34778579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EPB41L1	NM_001258329	exon12	c.T1160C	p.L387P	.	.	58	5	43	1	.	93
EPG5	57724	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	43460188	43460188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EPG5	NM_020964	exon32	c.G5519T	p.S1840I	.	.	63	12	53	0	.	580
ERCC8	1161	bcgsc.ca	37	5	60186850	60186850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ERCC8	NM_000082	exon10	c.T907C	p.C303R	.	.	201	7	190	2	.	227
ERN1	2081	bcgsc.ca	37	17	62131662	62131662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ERN1	NM_001433	exon15	c.A1901G	p.D634G	.	.	82	4	38	0	.	784
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6520166	6520166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ESPN	NM_031475	exon13	c.G2525T	p.R842L	.	.	203	38	164	0	.	514
ESRRG	2104	bcgsc.ca	37	1	216680429	216680429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ESRRG	NM_001243518	exon8	c.A1265G	p.D422G	.	.	341	11	256	2	.	187
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133314872	133314872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EXOC4	NM_021807	exon10	c.G1492T	p.V498F	.	.	140	21	184	0	.	159
FADS3	3995	bcgsc.ca	37	11	61647608	61647608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FADS3	NM_021727	exon2	c.T229C	p.F77L	.	.	124	5	70	0	.	46
FAIM2	23017	bcgsc.ca	37	12	50264295	50264295	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FAIM2	NM_012306	exon12	c.C943A	p.R315R	.	.	107	5	63	0	.	230
FAM182B	728882	ucsc.edu	37	20	25755462	25755462	+	RNA	SNP	G	G	T	rs71286794	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	30	7	19	0	AGGCTCTGCTGGG|0.500;GGGCTCTGCTGGA|0.500	.
FAM184A	79632	broad.mit.edu	37	6	119301311	119301311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FAM184A	NM_024581	exon10	c.G2293A	p.E765K	.	.	911	8	955	1	.	519
FAM208A	23272	bcgsc.ca	37	3	56674091	56674091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001112736	exon16	c.A2687G	p.H896R	.	.	289	7	240	1	.	.
FAM47A	158724	bcgsc.ca	37	X	34148844	34148844	+	Missense_Mutation	SNP	G	G	C	rs17855514		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FAM47A	NM_203408	exon1	c.C1552G	p.R518G	.	.	39	8	29	2	.	134
FAM73B	84895	bcgsc.ca	37	9	131825891	131825891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FAM73B	NM_032809	exon11	c.T1151C	p.L384P	.	.	134	5	77	0	.	91
FAM91A1	157769	bcgsc.ca	37	8	124799921	124799921	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FAM91A1	NM_144963	exon14	c.A1209G	p.A403A	.	.	126	6	115	1	.	91
FAM98A	25940	bcgsc.ca	37	2	33813431	33813431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FAM98A	NM_015475	exon4	c.T493C	p.F165L	.	.	253	7	265	0	.	91
FASTKD1	79675	bcgsc.ca	37	2	170401326	170401326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FASTKD1	NM_024622	exon9	c.C1721T	p.P574L	.	.	157	5	148	0	.	119
FGL1	2267	bcgsc.ca	37	8	17731924	17731924	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FGL1	NM_201553	exon5	c.A351G	p.G117G	.	.	315	9	381	1	.	90
FHL1	2273	bcgsc.ca	37	X	135290080	135290080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FHL1	NM_001159701	exon4	c.A548G	p.H183R	.	.	150	6	97	0	.	130
FILIP1	27145	broad.mit.edu;bcgsc.ca	37	6	76063420	76063420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FILIP1	NM_015687	exon4	c.A464G	p.E155G	.	.	167	5	187	0	.	94
FKBP10	60681	bcgsc.ca	37	17	39978528	39978528	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	FKBP10	NM_021939	exon10	c.T1617C	p.P539P	.	.	149	6	123	0	.	227
FTX	100302692	bcgsc.ca	37	X	73382099	73382099	+	RNA	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	54	4	31	0	.	.
GANAB	23193	bcgsc.ca	37	11	62402457	62402457	+	Silent	SNP	A	A	G	rs184599105		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GANAB	NM_198334	exon5	c.T396C	p.G132G	.	.	199	6	165	0	A|0.999;G|0.001	94
GAS2L2	246176	bcgsc.ca	37	17	34076217	34076217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GAS2L2	NM_139285	exon3	c.A647G	p.H216R	.	.	68	4	45	0	.	227
GATAD2A	54815	bcgsc.ca	37	19	19603478	19603478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GATAD2A	NM_017660	exon4	c.A491G	p.K164R	.	.	136	5	78	0	.	90
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74047313	74047313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GFM2	NM_032380	exon6	c.G310A	p.D104N	.	.	188	24	168	0	.	90
GIPC3	126326	bcgsc.ca	37	19	3585788	3585788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GIPC3	NM_133261	exon1	c.A193G	p.I65V	.	.	36	4	39	0	.	135
GK5	256356	bcgsc.ca	37	3	141901862	141901862	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GK5	NM_001039547	exon10	c.A846G	p.G282G	.	.	150	7	104	0	.	90
GLYAT	10249	bcgsc.ca	37	11	58477637	58477637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GLYAT	NM_201648	exon6	c.C493A	p.Q165K	.	.	110	5	163	0	.	90
GNRH2	2797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3025397	3025397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GNRH2	NM_001501	exon3	c.C227T	p.P76L	.	.	110	12	96	0	.	90
GOLGA6L6	727832	broad.mit.edu	37	15	20739851	20739851	+	Silent	SNP	C	C	T	rs201730658		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001145004	exon8	c.G1899A	p.E633E	.	.	298	5	229	0	.	.
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45017921	45017921	+	Missense_Mutation	SNP	G	G	T	rs147434599	byfrequency;alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GOSR2	NM_054022	exon7	c.G584T	p.G195V	.	.	56	17	31	0	G|0.999;C|0.001	92
GPX1	2876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49394940	49394940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GPX1	.	.	.	.	.	.	396	71	319	3	.	68
GRAP2	9402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40343142	40343142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRAP2	NM_004810	exon2	c.C32A	p.A11D	.	.	263	68	338	0	.	227
GRHL2	79977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	102611376	102611376	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRHL2	NM_024915	exon8	c.G1095A	p.A365A	.	.	298	60	304	0	.	93
GRIK4	2900	bcgsc.ca	37	11	120744868	120744868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRIK4	NM_014619	exon8	c.T1000C	p.S334P	.	.	87	7	83	3	.	92
HABP4	22927	bcgsc.ca	37	9	99227760	99227760	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HABP4	NM_014282	exon3	c.A654G	p.R218R	.	.	118	7	99	0	.	91
HCFC1R1	54985	hgsc.bcm.edu	37	16	3072911	3072912	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HCFC1R1	NM_001002018	exon5	c.370_371insC	p.S124fs	.	.	162	10	156	0	.	90
HCN1	348980	bcgsc.ca	37	5	45461949	45461949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HCN1	NM_021072	exon3	c.T1010C	p.V337A	.	.	369	10	378	1	.	91
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18633535	18633535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HDAC9	NM_001204144	exon8	c.G664A	p.A222T	.	.	146	23	216	0	.	227
HEATR4	399671	bcgsc.ca	37	14	73989687	73989687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HEATR4	NM_203309	exon2	c.T170C	p.L57P	.	.	114	5	71	0	.	91
HEPH	9843	bcgsc.ca	37	X	65408261	65408261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HEPH	NM_138737	exon5	c.T848C	p.L283P	.	.	313	8	247	0	.	135
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	.	.	415	15	477	4	.	68
HSP90B1	7184	broad.mit.edu;bcgsc.ca	37	12	104325389	104325389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HSP90B1	NM_003299	exon2	c.A140G	p.E47G	.	.	241	8	256	0	.	93
HSPA4	3308	bcgsc.ca	37	5	132427026	132427026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HSPA4	NM_002154	exon12	c.A1520G	p.E507G	.	.	330	15	335	3	.	226
HTR1E	3354	bcgsc.ca	37	6	87725698	87725698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HTR1E	NM_000865	exon2	c.A646G	p.R216G	.	.	185	6	168	0	.	93
IDE	3416	bcgsc.ca	37	10	94267376	94267376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	IDE	NM_004969	exon9	c.T1201C	p.L401L	.	.	93	4	108	0	.	92
IL6ST	3572	bcgsc.ca	37	5	55259264	55259264	+	Silent	SNP	T	T	C	rs141009333		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	IL6ST	NM_175767	exon7	c.A729G	p.T243T	.	.	199	6	156	0	T|1.000;C|0.000	290
ILF3	3609	bcgsc.ca	37	19	10791893	10791893	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ILF3	NM_017620	exon11	c.1070-2A>G	.	.	.	138	6	122	0	.	93
IVNS1ABP	10625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185274712	185274712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	IVNS1ABP	NM_006469	exon8	c.G721T	p.A241S	.	.	297	106	259	0	.	94
IZUMO2	126123	bcgsc.ca	37	19	50666068	50666068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	IZUMO2	NM_152358	exon2	c.A235G	p.T79A	.	.	86	4	91	0	.	90
JAG1	182	bcgsc.ca	37	20	10625023	10625023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	JAG1	NM_000214	exon19	c.A2354G	p.D785G	.	.	129	5	140	1	.	1273
KAT6B	23522	bcgsc.ca	37	10	76788634	76788634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_012330	exon18	c.A4052G	p.E1351G	.	.	94	4	111	0	.	.
KCNMA1	3778	bcgsc.ca	37	10	78844466	78844466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KCNMA1	NM_002247	exon12	c.A1452G	p.A484A	.	.	85	5	98	0	.	93
KCNN2	3781	bcgsc.ca	37	5	113831819	113831819	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KCNN2	NM_021614	exon8	c.C1680T	p.S560S	.	.	69	4	64	0	.	92
KDM2B	84678	bcgsc.ca	37	12	121867952	121867952	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KDM2B	NM_001005366	exon23	c.A3765G	p.R1255R	.	.	210	6	191	1	.	638
KDM3B	51780	bcgsc.ca	37	5	137728872	137728872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KDM3B	NM_016604	exon9	c.T2642C	p.V881A	.	.	159	5	117	0	.	542
KIAA1199	57214	bcgsc.ca	37	15	81188246	81188246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIAA1199	NM_018689	exon11	c.T1256C	p.V419A	.	.	123	5	203	0	.	93
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34647292	34647292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIAA1328	NM_020776	exon7	c.G1016C	p.R339P	.	.	435	68	538	0	.	90
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	32137832	32137832	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_018169	exon4	c.G3943T	p.E1315X	.	.	153	20	118	0	.	.
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39726715	39726715	+	Silent	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIF21A	NM_001173464	exon19	c.G2682C	p.T894T	.	.	187	37	177	0	.	97
KLHL25	64410	bcgsc.ca	37	15	86311867	86311867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KLHL25	NM_022480	exon2	c.T1175C	p.V392A	.	.	77	4	70	0	.	92
KRT18P55	284085	bcgsc.ca	37	17	26604253	26604253	+	RNA	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	55	5	77	0	.	.
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39522752	39522752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRT33B	NM_002279	exon3	c.G558T	p.E186D	.	.	95	19	128	0	.	90
KRT5	3852	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52910560	52910560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRT5	NM_000424	exon7	c.G1300T	p.E434X	.	.	202	28	206	1	.	90
KRTAP10-1	386677	bcgsc.ca	37	21	45959773	45959773	+	Silent	SNP	C	C	T	rs79593866		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRTAP10-1	NM_198691	exon1	c.G261A	p.P87P	.	.	258	13	186	9	.	91
KRTAP19-4	337971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31869199	31869199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRTAP19-4	NM_181610	exon1	c.G230T	p.R77I	.	.	239	32	250	0	.	70
KRTAP4-9	100132386	ucsc.edu	37	17	39261829	39261829	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001146041	exon1	c.T189C	p.T63T	.	.	58	10	60	1	.	.
L3MBTL4	91133	ucsc.edu;bcgsc.ca	37	18	6138293	6138293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	L3MBTL4	NM_173464	exon14	c.A1099G	p.T367A	.	.	42	4	44	0	.	93
LAMA2	3908	broad.mit.edu;bcgsc.ca	37	6	129781345	129781345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LAMA2	NM_000426	exon49	c.A6868G	p.K2290E	.	.	210	6	232	0	.	162
LCOR	84458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	98715171	98715171	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LCOR	NM_001170766	exon8	c.794delG	p.W265fs	.	.	138	23	157	0	.	189
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11213382	11213382	+	Missense_Mutation	SNP	G	G	T	rs146675823	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LDLR	NM_001195800	exon3	c.G233T	p.R78L	.	.	230	44	230	0	G|1.000;A|0.000	94
LGALS16	148003	bcgsc.ca	37	19	40149117	40149117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001190441	exon3	c.A110G	p.Q37R	.	.	68	4	94	0	.	.
LHX9	56956	bcgsc.ca	37	1	197890545	197890545	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LHX9	NM_020204	exon3	c.T489C	p.T163T	.	.	194	6	144	1	.	91
LOC642236	0	bcgsc.ca	37	9	68437759	68437759	+	RNA	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	835	23	540	6	.	.
LOC644189	0	ucsc.edu	37	19	36913208	36913208	+	RNA	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	180	36	198	0	.	.
LOC729020	0	bcgsc.ca	37	10	105006084	105006084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001143909	exon1	c.A331G	p.N111D	.	.	249	9	248	3	.	.
LOC729852	0	bcgsc.ca	37	7	7916971	7916971	+	RNA	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	122	6	143	0	.	.
LONP2	83752	ucsc.edu;bcgsc.ca	37	16	48286049	48286049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LONP2	NM_031490	exon2	c.A241G	p.T81A	.	.	58	6	62	0	.	90
LRRC40	55631	bcgsc.ca	37	1	70654899	70654899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LRRC40	NM_017768	exon2	c.T209C	p.L70P	.	.	204	7	188	0	.	91
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137653	40137653	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LRRC4C	NM_001258419	exon7	c.C190A	p.R64R	.	.	155	20	157	0	.	521
LTA4H	4048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96406996	96406996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LTA4H	NM_000895	exon14	c.A1349C	p.Y450S	.	.	171	24	166	1	.	91
LYNX1	66004	ucsc.edu	37	8	143846524	143846524	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LYNX1	NM_023946	exon4	c.G189A	p.T63T	.	.	47	4	42	0	.	90
MACF1	23499	bcgsc.ca	37	1	39776503	39776503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MACF1	NM_012090	exon27	c.A3116G	p.E1039G	.	.	74	4	74	0	.	165
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	75004287	75004287	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MAGEE2	NM_138703	exon1	c.G600A	p.W200X	.	.	110	26	69	0	.	132
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46485312	46485312	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MAST2	NM_015112	exon11	c.G1233A	p.Q411Q	.	.	157	26	188	0	.	581
MB21D2	151963	bcgsc.ca	37	3	192516900	192516900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MB21D2	NM_178496	exon2	c.T751C	p.W251R	.	.	147	5	131	0	.	70
MC4R	4160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	58039123	58039123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MC4R	NM_005912	exon1	c.G460T	p.A154S	.	.	99	14	121	0	.	522
MCM5	4174	bcgsc.ca	37	22	35808581	35808581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MCM5	NM_006739	exon8	c.A998G	p.E333G	.	.	97	5	103	0	.	228
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168819859	168819859	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MECOM	NM_004991	exon11	c.C2760T	p.R920R	.	.	153	24	172	0	.	853
MED10	84246	bcgsc.ca	37	5	6372665	6372665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MED10	NM_032286	exon4	c.A359G	p.D120G	.	.	93	6	98	1	.	91
MED12	9968	hgsc.bcm.edu	37	X	70361159	70361160	+	In_Frame_Ins	INS	-	-	CCAGCAGCAACA	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MED12	NM_005120	exon43	c.6347_6348insCCAGCAGCAACA	p.H2116delinsHQQQH	.	.	235	107	138	0	.	272
MEGF10	84466	bcgsc.ca	37	5	126755889	126755889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MEGF10	NM_032446	exon13	c.T1580C	p.L527P	.	.	73	4	50	0	.	94
MGA	23269	bcgsc.ca	37	15	42034855	42034855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MGA	NM_001164273	exon15	c.A4697G	p.Q1566R	.	.	86	4	102	0	.	522
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49443882	49443882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLL2	NM_003482	exon11	c.G3489T	p.V1163V	.	.	157	23	124	0	.	612
MLL2	8085	bcgsc.ca	37	12	49421697	49421697	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLL2	NM_003482	exon47	c.T14532C	p.G4844G	.	.	211	7	242	1	.	612
MLST8	64223	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2256103	2256103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLST8	NM_001199174	exon2	c.G17C	p.G6A	.	.	114	38	103	1	.	392
MPP5	64398	bcgsc.ca	37	14	67770241	67770241	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MPP5	NM_022474	exon8	c.T966C	p.S322S	.	.	142	5	159	0	.	91
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38289863	38289868	+	In_Frame_Del	DEL	CAGGAA	CAGGAA	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	CAGGAA	CAGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MSL1	NM_001012241	exon8	c.844_849del	p.282_283del	.	.	104	17	129	0	.	68
MST1L	11223	broad.mit.edu;bcgsc.ca	37	1	17084344	17084344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001271733	exon13	c.T1673C	p.L558P	.	.	598	18	517	3	.	.
MTL5	9633	bcgsc.ca	37	11	68483318	68483318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTL5	NM_004923	exon7	c.T1007C	p.F336S	.	.	59	4	60	0	.	155
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56582859	56582859	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTMR4	NM_004687	exon11	c.G1077T	p.V359V	.	.	152	26	121	0	.	91
MTMR7	9108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17198946	17198946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTMR7	NM_004686	exon6	c.G658A	p.E220K	.	.	88	23	102	1	.	91
MUC17	140453	broad.mit.edu;bcgsc.ca	37	7	100677499	100677499	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MUC17	NM_001040105	exon3	c.G2802T	p.T934T	.	.	500	19	592	0	.	95
MUC21	394263	bcgsc.ca	37	6	30954871	30954871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MUC21	NM_001010909	exon2	c.A919G	p.T307A	.	.	192	8	146	0	.	92
MUTYH	4595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45795060	45795060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MUTYH	NM_001128425	exon16	c.G1568T	p.R523L	.	.	326	50	244	1	.	1083
MYH6	4624	hgsc.bcm.edu	37	14	23859463	23859463	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYH6	NM_002471	exon26	c.3535delG	p.D1179fs	.	.	332	21	184	0	.	94
MYH7	4625	hgsc.bcm.edu;broad.mit.edu	37	14	23889251	23889251	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYH7	NM_000257	exon27	c.3529delG	p.D1177fs	.	.	330	34	189	0	.	94
MYO1G	64005	bcgsc.ca	37	7	45009071	45009071	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO1G	NM_033054	exon12	c.A1515G	p.T505T	.	.	169	6	121	0	.	137
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171260816	171260816	+	Silent	SNP	G	G	T	rs201316029	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO3B	NM_001083615	exon20	c.G2337T	p.P779P	.	.	210	41	225	0	G|0.999;A|0.001	530
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128335798	128335798	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO7B	NM_001080527	exon9	c.G940T	p.E314X	.	.	171	24	140	0	.	47
N4BP2	55728	broad.mit.edu	37	4	40144385	40144385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	N4BP2	NM_018177	exon15	c.T4878C	p.A1626A	.	.	408	6	421	2	.	602
NADK	65220	bcgsc.ca	37	1	1685779	1685779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NADK	NM_001198994	exon11	c.T1322C	p.L441P	.	.	85	5	65	0	.	44
NADSYN1	55191	bcgsc.ca	37	11	71209403	71209403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NADSYN1	NM_018161	exon20	c.T1899C	p.A633A	.	.	65	5	61	0	.	92
NAP1L4	4676	bcgsc.ca	37	11	2997271	2997271	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NAP1L4	NM_005969	exon4	c.T156C	p.P52P	.	.	133	6	115	0	.	91
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	134	6	134	1	C|0.500;T|0.500	.
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46279951	46279951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NCOA3	NM_181659	exon20	c.G3877T	p.D1293Y	.	.	133	22	139	0	.	229
ND2	0	bcgsc.ca	37	MT	4950	4950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	ENST00000361453	exon1	c.T481C	p.S161P	.	.	222	84	147	1	.	.
NEFH	4744	hgsc.bcm.edu	37	22	29885571	29885572	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NEFH	NM_021076	exon4	c.1942_1943insCCCCTGAGAAGGCCAAGT	p.S648delinsSPEKAKS	.	.	143	34	189	0	.	90
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78407772	78407772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NEXN	NM_144573	exon12	c.T1538A	p.M513K	.	.	299	43	339	0	.	92
NOP14-AS1	317648	ucsc.edu	37	4	2940347	2940347	+	RNA	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	20	1	11	0	.	.
NOS1	4842	broad.mit.edu;bcgsc.ca	37	12	117723077	117723077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NOS1	NM_000620	exon7	c.G1351T	p.V451F	.	.	190	7	207	1	.	154
NSUN5	55695	bcgsc.ca	37	7	72721421	72721421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NSUN5	NM_148956	exon4	c.A470G	p.Q157R	.	.	117	5	101	0	.	90
NUCB1	4924	bcgsc.ca	37	19	49422315	49422315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NUCB1	NM_006184	exon9	c.A845G	p.E282G	.	.	85	4	77	0	.	90
NUP153	9972	bcgsc.ca	37	6	17706527	17706527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NUP153	NM_005124	exon1	c.A92G	p.Q31R	.	.	68	4	62	0	.	637
NUP88	4927	bcgsc.ca	37	17	5314052	5314052	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NUP88	NM_002532	exon4	c.C651A	p.A217A	.	.	88	4	102	0	.	204
NUSAP1	51203	bcgsc.ca	37	15	41641307	41641307	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_018454	exon3	c.A174G	p.Q58Q	.	.	204	7	220	0	.	.
NXF4	55999	bcgsc.ca	37	X	101817796	101817796	+	RNA	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NXF4	.	.	.	.	.	.	74	4	55	0	.	182
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114453455	114453455	+	Missense_Mutation	SNP	G	G	A	rs111330181		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001077639	exon3	c.C385T	p.R129C	.	.	443	59	456	0	A|1.000;|0.000	.
OPTN	10133	bcgsc.ca	37	10	13158272	13158272	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OPTN	NM_001008212	exon6	c.A558G	p.G186G	.	.	93	5	92	0	.	70
OR10H3	26532	broad.mit.edu	37	19	15852777	15852777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR10H3	NM_013938	exon1	c.G575A	p.S192N	.	.	887	7	910	0	.	68
OR2T12	127064	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248458244	248458244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2T12	NM_001004692	exon1	c.C637A	p.L213M	.	.	1594	243	1449	2	.	71
OR2T2	401992	bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	rs199823862		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	TGCTGCG	TGCTGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2T2	NM_001004136	exon1	c.607_613del	p.203_205del	.	.	908	16	915	1	.	23
OR2Z1	284383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8842140	8842140	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2Z1	NM_001004699	exon1	c.C750A	p.L250L	.	.	231	33	172	1	.	69
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135486	55135486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR4A15	NM_001005275	exon1	c.T127C	p.L43L	.	.	220	35	262	0	.	70
OR51V1	283111	bcgsc.ca	37	11	5221459	5221459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR51V1	NM_001004760	exon1	c.A472G	p.I158V	.	.	91	4	77	0	.	69
OR52R1	119695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4825512	4825512	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR52R1	NM_001005177	exon1	c.G99T	p.P33P	.	.	132	20	148	1	.	69
OR5T2	219464	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55999981	55999981	+	Silent	SNP	A	A	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR5T2	NM_001004746	exon1	c.T681G	p.S227S	.	.	658	95	655	1	.	70
OR7D4	125958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9324917	9324917	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR7D4	NM_001005191	exon1	c.G597A	p.L199L	.	.	186	33	146	0	.	71
ORC3	23595	bcgsc.ca	37	6	88315723	88315723	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ORC3	NM_181837	exon5	c.A411G	p.Q137Q	.	.	276	7	308	0	.	206
ORC4	5000	bcgsc.ca	37	2	148710088	148710088	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ORC4	NM_002552	exon8	c.C442A	p.R148R	.	.	210	6	219	0	.	207
OTOGL	283310	bcgsc.ca	37	12	80712416	80712416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_173591	exon32	c.T3698C	p.L1233S	.	.	150	5	111	0	.	.
OTOP1	133060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4199717	4199717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OTOP1	NM_177998	exon5	c.T844C	p.S282P	.	.	285	52	339	2	.	92
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	29617463	29617463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OVCH1	NM_183378	exon18	c.C2102A	p.T701N	.	.	142	20	148	0	.	210
PADI3	51702	bcgsc.ca	37	1	17601193	17601193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PADI3	NM_016233	exon11	c.T1219C	p.F407L	.	.	147	7	123	1	.	132
PAX2	5076	bcgsc.ca	37	10	102584717	102584717	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PAX2	NM_003988	exon9	c.A1080G	p.E360E	.	.	116	5	138	0	.	90
PCDH11X	27328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	91090988	91090988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDH11X	NM_001168363	exon1	c.C485T	p.A162V	.	.	244	101	178	1	.	193
PCDHA11	56138	broad.mit.edu;bcgsc.ca	37	5	140250040	140250040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHA11	NM_018902	exon1	c.C1352A	p.A451E	.	.	336	35	311	1	.	67
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140250371	140250371	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHA11	NM_018902	exon1	c.G1683A	p.A561A	.	.	104	16	105	0	.	67
PCDHB13	56123	broad.mit.edu	37	5	140594775	140594775	+	Silent	SNP	C	C	T	rs111778165	byfrequency	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHB13	NM_018933	exon1	c.C1080T	p.N360N	.	.	425	6	387	1	C|1.000;T|0.000	93
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82435139	82435139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCLO	NM_033026	exon21	c.C14798T	p.P4933L	.	.	187	17	216	0	.	29
PCYT2	5833	bcgsc.ca	37	17	79866897	79866897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCYT2	NM_002861	exon3	c.C195G	p.H65Q	.	.	147	5	96	0	.	68
PDS5A	23244	bcgsc.ca	37	4	39929644	39929644	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001100399	exon3	c.T279C	p.C93C	.	.	311	7	377	0	.	.
PFKP	5214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3146084	3146084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PFKP	NM_002627	exon5	c.G568A	p.A190T	.	.	72	17	60	0	.	253
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27251239	27251239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PHF12	NM_020889	exon4	c.G403T	p.D135Y	.	.	212	48	172	0	.	91
PHF15	23338	bcgsc.ca	37	5	133901890	133901890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PHF15	NM_015288	exon9	c.A1054G	p.N352D	.	.	230	6	196	0	.	90
PIGH	5283	bcgsc.ca	37	14	68060473	68060473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PIGH	NM_004569	exon2	c.A377G	p.E126G	.	.	216	7	175	0	.	227
PITPNM2	57605	ucsc.edu;bcgsc.ca	37	12	123472131	123472131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PITPNM2	NM_020845	exon21	c.G3190T	p.G1064W	.	.	76	9	72	0	.	228
PKHD1	5314	bcgsc.ca	37	6	51887728	51887728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PKHD1	NM_170724	exon33	c.A5251G	p.R1751G	.	.	129	5	143	0	.	603
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31534717	31534717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLA2G3	NM_015715	exon2	c.C583A	p.Q195K	.	.	544	95	593	1	.	226
PLA2G7	7941	bcgsc.ca	37	6	46682219	46682219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLA2G7	NM_005084	exon5	c.T448C	p.S150P	.	.	154	5	140	0	.	90
PLCD3	113026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43195840	43195840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLCD3	.	.	.	.	.	.	166	65	88	1	.	703
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81927388	81927388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLCG2	NM_002661	exon12	c.G1061T	p.R354L	.	.	74	13	90	0	.	892
PLIN4	729359	bcgsc.ca	37	19	4512205	4512205	+	Silent	SNP	T	T	C	rs111833260		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLIN4	NM_001080400	exon3	c.A1725G	p.T575T	.	.	573	47	379	4	T|0.500;C|0.500	68
PLIN4	729359	bcgsc.ca	37	19	4512226	4512226	+	Silent	SNP	A	A	G	rs73920829	byfrequency	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLIN4	NM_001080400	exon3	c.T1704C	p.A568A	.	.	528	30	362	7	A|0.941;G|0.059	68
PLXNB1	5364	bcgsc.ca	37	3	48457061	48457061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLXNB1	NM_001130082	exon19	c.A3725G	p.Q1242R	.	.	111	6	106	0	.	293
POLI	11201	broad.mit.edu	37	18	51810338	51810338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	POLI	NM_007195	exon7	c.A1022G	p.E341G	.	.	1158	10	1009	0	.	229
POR	5447	ucsc.edu	37	7	75614401	75614401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	POR	NM_000941	exon12	c.A1274G	p.E425G	.	.	39	4	27	0	.	23
PPARG	5468	bcgsc.ca	37	3	12434115	12434115	+	Silent	SNP	T	T	C	rs201126401		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPARG	NM_015869	exon4	c.T483C	p.G161G	.	.	136	5	133	1	T|0.999;C|0.000	1043
PPARGC1B	133522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149213132	149213132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPARGC1B	NM_133263	exon5	c.C1496T	p.P499L	.	.	102	21	89	0	.	186
PPBP	5473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74853684	74853684	+	Missense_Mutation	SNP	G	G	T	rs201755460	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPBP	NM_002704	exon1	c.C137A	p.A46E	.	.	229	51	291	0	.	93
PPP2R2B	5521	broad.mit.edu;bcgsc.ca	37	5	146435232	146435232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPP2R2B	NM_181674	exon1	c.A70G	p.R24G	.	.	158	15	141	0	.	659
PREX1	57580	bcgsc.ca	37	20	47267566	47267566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PREX1	NM_020820	exon23	c.A2683G	p.S895G	.	.	88	4	76	0	.	231
PREX2	80243	bcgsc.ca	37	8	69104749	69104749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PREX2	NM_024870	exon37	c.C4593A	p.S1531R	.	.	88	9	87	0	.	390
PRKCQ	5588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6470193	6470193	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PRKCQ	NM_006257	exon18	c.C2097A	p.P699P	.	.	205	39	187	1	.	1380
PRKDC	5591	mdanderson.org	37	8	48869992	48869992	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PRKDC	NM_001081640	exon3	c.155-1G>T	.	.	.	130	12	111	0	.	1515
PTPRN	5798	bcgsc.ca	37	2	220155327	220155327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PTPRN	NM_002846	exon22	c.A2801G	p.K934R	.	.	126	5	134	1	.	229
PVRL2	5819	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	45391367	45391367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PVRL2	NM_001042724	exon9	c.G1348T	p.E450X	.	.	249	53	193	1	.	90
QRICH2	84074	bcgsc.ca	37	17	74288352	74288352	+	Missense_Mutation	SNP	C	C	T	rs201256631	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	QRICH2	NM_032134	exon4	c.G1958A	p.R653H	.	.	217	17	163	0	.	94
RAB32	10981	bcgsc.ca	37	6	146870668	146870668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RAB32	NM_006834	exon2	c.G319T	p.D107Y	.	.	221	6	249	0	.	651
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37154091	37154091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RALGAPB	NM_020336	exon12	c.G1832C	p.R611P	.	.	607	105	711	0	.	92
RAP1GAP	5909	bcgsc.ca	37	1	21940129	21940129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RAP1GAP	NM_001145658	exon9	c.A658G	p.M220V	.	.	84	4	86	0	.	245
RARG	5916	bcgsc.ca	37	12	53605549	53605549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RARG	NM_000966	exon10	c.T1276C	p.S426P	.	.	86	5	52	0	.	722
RASAL3	64926	hgsc.bcm.edu	37	19	15563967	15563968	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_022904	exon15	c.2621_2622insC	p.Q874fs	.	.	124	9	52	0	.	.
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	49030478	49030479	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RB1	NM_000321	exon19	c.1953_1954insA	p.Y651fs	.	.	103	19	126	0	.	3784
RBCK1	10616	hgsc.bcm.edu	37	20	400070	400071	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RBCK1	NM_031229	exon5	c.540_541insC	p.E180fs	.	.	156	13	140	0	.	522
RBM43	375287	bcgsc.ca	37	2	152107654	152107654	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RBM43	NM_198557	exon4	c.T840C	p.I280I	.	.	299	8	263	0	.	90
RBPMS2	348093	bcgsc.ca	37	15	65033386	65033386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RBPMS2	NM_194272	exon7	c.T623C	p.F208S	.	.	72	4	75	0	.	90
REEP4	80346	bcgsc.ca	37	8	21997011	21997011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	REEP4	NM_025232	exon5	c.A335G	p.E112G	.	.	105	5	75	0	.	91
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	182458241	182458241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RGSL1	NM_001137669	exon8	c.G1621T	p.E541X	.	.	270	40	241	0	.	226
RIOK3	8780	bcgsc.ca	37	18	21061184	21061184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RIOK3	NM_003831	exon13	c.A1501G	p.R501G	.	.	133	6	134	0	.	335
RNF13	11342	bcgsc.ca	37	3	149677894	149677894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RNF13	NM_007282	exon10	c.A752G	p.D251G	.	.	397	9	386	2	.	227
RNF187	149603	bcgsc.ca	37	1	228680821	228680821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RNF187	NM_001010858	exon3	c.A551G	p.E184G	.	.	223	6	145	0	.	68
RPL18	6141	bcgsc.ca	37	19	49119357	49119357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RPL18	NM_000979	exon5	c.T400C	p.C134R	.	.	125	5	108	0	.	90
RPP30	10556	bcgsc.ca	37	10	92660368	92660368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RPP30	NM_006413	exon11	c.A739G	p.K247E	.	.	109	6	139	0	.	226
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46318184	46318184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RSPH6A	NM_030785	exon1	c.G251T	p.G84V	.	.	112	11	77	0	.	91
RTFDC1	51507	bcgsc.ca	37	20	55093214	55093214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_016407	exon9	c.A814G	p.S272G	.	.	123	5	123	0	.	.
RXFP1	59350	bcgsc.ca	37	4	159443150	159443150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RXFP1	NM_001253728	exon1	c.T22C	p.F8L	.	.	171	8	177	1	.	91
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38974064	38974064	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RYR1	NM_001042723	exon33	c.G4842A	p.V1614V	.	.	76	13	91	0	.	100
S100A7A	338324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153390678	153390678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	S100A7A	NM_176823	exon2	c.C120A	p.F40L	.	.	446	163	312	1	.	91
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23904756	23904756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SACS	NM_014363	exon10	c.G13259T	p.C4420F	.	.	151	35	129	0	.	298
SDHB	6390	bcgsc.ca	37	1	17355102	17355102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SDHB	NM_003000	exon4	c.T416C	p.L139P	.	.	167	6	158	0	.	658
SEC61A1	29927	broad.mit.edu	37	3	127783867	127783867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SEC61A1	NM_013336	exon8	c.T764C	p.V255A	.	.	657	9	567	0	.	91
SERPINB4	6318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61308143	61308143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SERPINB4	NM_002974	exon5	c.A434G	p.K145R	.	.	463	77	512	0	.	228
SH2D3C	10044	broad.mit.edu	37	9	130504196	130504196	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SH2D3C	NM_170600	exon9	c.C1959A	p.G653G	.	.	114	8	62	2	.	228
SH3GLB2	56904	bcgsc.ca	37	9	131784605	131784605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SH3GLB2	NM_020145	exon2	c.A161G	p.E54G	.	.	133	6	140	0	.	90
SHMT1	6470	bcgsc.ca	37	17	18243497	18243497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SHMT1	NM_148918	exon7	c.T674C	p.L225P	.	.	94	6	94	0	.	91
SIK3	23387	bcgsc.ca	37	11	116729414	116729414	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SIK3	NM_025164	exon20	c.T2449C	p.L817L	.	.	91	6	102	0	.	919
SIL1	64374	bcgsc.ca	37	5	138287496	138287496	+	Missense_Mutation	SNP	G	G	T	rs201546394	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SIL1	NM_001037633	exon9	c.C845A	p.P282Q	.	.	75	4	66	0	G|0.999;A|0.000	90
SLC18A2	6571	ucsc.edu;bcgsc.ca	37	10	119015145	119015145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC18A2	NM_003054	exon9	c.A872G	p.D291G	.	.	40	4	49	0	.	90
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92949118	92949118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC24A4	NM_153646	exon13	c.G1350T	p.E450D	.	.	135	20	146	0	.	93
SLC2A14	144195	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	7981450	7981450	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC2A14	NM_153449	exon7	c.G595T	p.E199X	.	.	210	29	216	1	.	91
SLC37A4	2542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118896705	118896705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC37A4	NM_001467	exon8	c.G956T	p.R319L	.	.	134	14	140	0	.	67
SLC6A11	6538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10967702	10967702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC6A11	NM_014229	exon9	c.C1133A	p.A378D	.	.	242	47	205	1	.	132
SLC8A2	6543	mdanderson.org	37	19	47951208	47951208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC8A2	NM_015063	exon4	c.G1621A	p.V541M	.	.	16	3	10	0	.	94
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86370026	86370026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLITRK6	NM_032229	exon2	c.C618A	p.H206Q	.	.	131	24	120	0	.	137
SMAP2	64744	bcgsc.ca	37	1	40881033	40881033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SMAP2	NM_022733	exon7	c.T661C	p.S221P	.	.	360	8	401	0	.	68
SMG1	23049	mdanderson.org	37	16	18887682	18887682	+	Missense_Mutation	SNP	C	C	T	rs3200442	byfrequency;by2hit2allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SMG1	NM_015092	exon13	c.G1654A	p.V552M	.	.	280	62	287	0	C|0.070;T|0.930	1160
SMG9	56006	hgsc.bcm.edu;bcgsc.ca	37	19	44238560	44238560	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SMG9	NM_019108	exon10	c.C1083A	p.T361T	.	.	101	5	76	0	.	91
SORCS3	22986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106959776	106959776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SORCS3	NM_014978	exon15	c.C2029T	p.L677F	.	.	150	30	151	1	.	99
SP100	6672	bcgsc.ca	37	2	231379842	231379842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SP100	NM_003113	exon25	c.A2127G	p.S709S	.	.	111	5	86	0	.	94
SPATA31D5P	347127	bcgsc.ca	37	9	84530912	84530912	+	RNA	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	68	4	88	0	.	.
SPDYE1	285955	bcgsc.ca	37	7	44046934	44046934	+	Missense_Mutation	SNP	G	G	A	rs200388629	byfrequency	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	SPDYE1,NS,carcinoma,-2	SPDYE1	NM_175064	exon5	c.G700A	p.G234R	.	.	522	17	521	6	G|0.981;A|0.019	91
SPIN4	139886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62570624	62570624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SPIN4	NM_001012968	exon1	c.C75T	p.H25H	.	.	84	44	89	0	.	109
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52546358	52546358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STAB1	NM_015136	exon27	c.C2885T	p.A962V	.	.	68	9	75	0	.	139
STAB2	55576	bcgsc.ca	37	12	104081982	104081982	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STAB2	NM_017564	exon28	c.C3034A	p.R1012R	.	.	281	7	268	0	.	104
STAM	8027	broad.mit.edu;bcgsc.ca	37	10	17737093	17737093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STAM	NM_003473	exon7	c.T581C	p.L194P	.	.	182	6	177	0	.	154
STK3	6788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99560362	99560362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STK3	NM_001256312	exon11	c.A1060T	p.M354L	.	.	152	34	188	0	.	978
STXBP2	6813	bcgsc.ca	37	19	7707126	7707126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STXBP2	NM_001272034	exon9	c.A734G	p.D245G	.	.	133	6	96	1	.	91
SYNE2	23224	bcgsc.ca	37	14	64453198	64453198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SYNE2	NM_182914	exon19	c.A2176G	p.N726D	.	.	154	6	155	0	.	164
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62551067	62551067	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SYT16	NM_031914	exon5	c.A1588T	p.S530C	.	.	113	22	80	0	.	23
TANC1	85461	bcgsc.ca	37	2	160031519	160031519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TANC1	NM_033394	exon12	c.A1559G	p.E520G	.	.	78	4	79	0	.	92
TAP2	6891	bcgsc.ca	37	6	32798494	32798494	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TAP2	NM_018833	exon8	c.T1362C	p.P454P	.	.	248	8	219	2	.	90
TAS2R14	50840	bcgsc.ca	37	12	11091606	11091606	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TAS2R14	NM_023922	exon1	c.T201C	p.C67C	.	.	184	7	151	0	.	90
TBC1D26	353149	broad.mit.edu	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	rs202131240		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TBC1D26	NM_178571	exon7	c.A296G	p.Y99C	.	.	258	8	203	1	.	90
TBC1D8B	54885	bcgsc.ca	37	X	106097504	106097504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TBC1D8B	NM_017752	exon14	c.A2330G	p.E777G	.	.	383	8	271	0	.	133
TCF3	6929	bcgsc.ca	37	19	1619145	1619145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TCF3	NM_003200	exon16	c.T1415C	p.L472P	.	.	63	4	49	0	.	721
TCF7L2	6934	bcgsc.ca	37	10	114917784	114917784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TCF7L2	NM_001146283	exon12	c.A1346G	p.K449R	.	.	206	6	216	0	.	586
TCP11L2	255394	bcgsc.ca	37	12	106704910	106704910	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TCP11L2	NM_152772	exon2	c.T57C	p.D19D	.	.	120	5	116	0	.	93
THSD7B	80731	bcgsc.ca	37	2	137872715	137872715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	THSD7B	.	.	.	.	.	.	95	4	79	0	.	75
TLN2	83660	bcgsc.ca	37	15	63112781	63112781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TLN2	NM_015059	exon51	c.A6974G	p.E2325G	.	.	60	4	65	0	.	573
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12939183	12939183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TLR8	NM_138636	exon2	c.T2024C	p.M675T	.	.	134	47	87	0	.	629
TMEM160	54958	bcgsc.ca	37	19	47549874	47549874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TMEM160	NM_017854	exon2	c.A278G	p.D93G	.	.	58	4	63	0	.	90
TMPRSS3	64699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43802158	43802158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TMPRSS3	NM_032405	exon9	c.T968C	p.L323P	.	.	150	14	160	1	.	155
TNFRSF21	27242	broad.mit.edu	37	6	47251733	47251733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TNFRSF21	NM_014452	exon3	c.A1184G	p.K395R	.	.	628	8	519	0	.	227
TNK2	10188	ucsc.edu;bcgsc.ca	37	3	195605439	195605439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TNK2	NM_001010938	exon8	c.G1228T	p.G410W	.	.	43	4	32	0	.	957
TNPO1	3842	bcgsc.ca	37	5	72187709	72187709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TNPO1	NM_002270	exon15	c.T1774C	p.F592L	.	.	123	5	103	0	.	228
TNRC6C	57690	bcgsc.ca	37	17	76046589	76046589	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TNRC6C	NM_018996	exon4	c.A1446G	p.A482A	.	.	81	4	60	0	.	24
TOX3	27324	broad.mit.edu	37	16	52479931	52479931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TOX3	NM_001080430	exon5	c.A881G	p.D294G	.	.	543	11	762	2	.	68
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	.	.	172	34	202	2	C|1.000;|0.000	70225
TRAPPC3	27095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36614938	36614938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRAPPC3	NM_001270894	exon1	c.G42A	p.M14I	.	.	172	24	117	1	.	90
TRIM49	57093	hgsc.bcm.edu;broad.mit.edu	37	11	89537604	89537604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRIM49	NM_020358	exon3	c.34delG	p.E12fs	.	.	394	36	438	0	.	84
TRIM50	135892	bcgsc.ca	37	7	72730584	72730584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRIM50	NM_178125	exon6	c.T854C	p.L285P	.	.	92	5	76	0	.	227
TRIM8	81603	bcgsc.ca	37	10	104414866	104414866	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRIM8	NM_030912	exon3	c.T696C	p.V232V	.	.	88	5	93	2	.	227
tRNA-Leu1	0	broad.mit.edu	37	MT	3243	3243	+	RNA	SNP	A	A	G	rs199474668		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	.	.	.	.	.	.	212	76	132	0	.	.
TRO	7216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	54955568	54955598	+	Frame_Shift_Del	DEL	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRO	NM_001039705	exon12	c.2411_2441del	p.804_814del	.	.	145	0	136	0	.	131
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2098719	2098719	+	Nonsense_Mutation	SNP	C	C	T	rs137854105		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TSC2	NM_001114382	exon2	c.C103T	p.Q35X	.	.	264	59	227	0	.	1908
TTBK1	84630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43230655	43230655	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTBK1	NM_032538	exon13	c.T1553A	p.V518E	.	.	156	26	117	1	.	353
TTC39B	158219	bcgsc.ca	37	9	15225928	15225928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTC39B	NM_001168340	exon3	c.T358C	p.S120P	.	.	88	5	71	0	.	187
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179484372	179484372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTN	NM_001267550	exon250	c.G46672T	p.A15558S	.	.	314	48	312	1	.	636
TTYH2	94015	bcgsc.ca	37	17	72248371	72248371	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTYH2	NM_032646	exon11	c.1117-2A>G	.	.	.	179	6	115	0	.	138
TUBGCP3	10426	bcgsc.ca	37	13	113176758	113176758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TUBGCP3	NM_006322	exon14	c.A1621G	p.T541A	.	.	345	10	295	3	.	90
TUBGCP3	10426	broad.mit.edu;bcgsc.ca	37	13	113181363	113181363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TUBGCP3	NM_006322	exon13	c.T1448C	p.V483A	.	.	190	6	150	1	.	90
TYW1	55253	bcgsc.ca	37	7	66582482	66582482	+	Silent	SNP	G	G	A	rs13221716		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TYW1	NM_018264	exon13	c.G1575A	p.P525P	.	.	232	8	201	3	.	91
UBL7	84993	bcgsc.ca	37	15	74743860	74743860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	UBL7,NS,carcinoma,-1	UBL7	NM_201265	exon5	c.T389C	p.V130A	.	.	73	4	95	0	.	91
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49151699	49151699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	USP19	NM_001199161	exon16	c.C2311G	p.P771A	.	.	200	39	132	0	.	663
USP47	55031	bcgsc.ca	37	11	11971992	11971992	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	USP47	NM_017944	exon23	c.T3342C	p.I1114I	.	.	121	5	97	0	.	660
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53761860	53761860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	VN1R2	NM_173856	exon1	c.T232G	p.S78A	.	.	135	26	90	0	.	90
VSX2	338917	bcgsc.ca	37	14	74707917	74707917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	VSX2	NM_182894	exon2	c.A403G	p.M135V	.	.	64	4	43	0	.	69
WDR72	256764	bcgsc.ca	37	15	54025288	54025288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	WDR72	NM_182758	exon2	c.T59C	p.I20T	.	.	134	6	133	1	.	92
XAB2	56949	broad.mit.edu	37	19	7692617	7692617	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	XAB2	NM_020196	exon3	c.C321T	p.H107H	.	.	198	4	135	1	.	272
YAP1	10413	bcgsc.ca	37	11	102033270	102033270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	YAP1	NM_001130145	exon3	c.C656T	p.P219L	.	.	82	4	109	0	.	659
YAP1	10413	bcgsc.ca	37	11	102033273	102033273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	YAP1	NM_001130145	exon3	c.T659C	p.V220A	.	.	80	5	102	0	.	659
ZBED5	58486	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10875696	10875696	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_021211	exon3	c.G797C	p.R266T	.	.	215	12	216	0	.	.
ZCCHC14	23174	bcgsc.ca	37	16	87452451	87452451	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZCCHC14	NM_015144	exon8	c.689+2T>C	.	.	.	80	4	54	0	.	154
ZDHHC8	29801	bcgsc.ca	37	22	20131171	20131171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZDHHC8	NM_001185024	exon10	c.T2018C	p.L673P	.	.	69	4	54	1	.	91
ZFP106	64397	bcgsc.ca	37	15	42720227	42720227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZFP106	NM_022473	exon12	c.T4918C	p.F1640L	.	.	139	5	118	0	.	515
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62340061	62340061	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZGPAT	NM_032527	exon2	c.G129T	p.L43L	.	.	59	11	63	0	.	90
ZKSCAN4	387032	bcgsc.ca	37	6	28215869	28215869	+	Silent	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZKSCAN4	NM_019110	exon3	c.T630C	p.A210A	.	.	146	5	129	0	.	91
ZNF154	7710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58216279	58216279	+	Silent	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF154	NM_001085384	exon2	c.T102A	p.A34A	.	.	266	30	314	0	.	90
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123598880	123598880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF202	NM_003455	exon7	c.T793C	p.Y265H	.	.	238	13	227	0	.	91
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	123600353	123600353	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF202	NM_003455	exon5	c.G583T	p.E195X	.	.	123	10	140	0	.	91
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58967236	58967236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF324B	NM_207395	exon4	c.G925T	p.G309C	.	.	158	23	185	0	.	91
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	72775861	72775861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF407	NM_017757	exon8	c.C6184T	p.P2062S	.	.	94	9	74	0	.	92
ZNF511	118472	bcgsc.ca	37	10	135123684	135123684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF511	NM_145806	exon4	c.A446G	p.E149G	.	.	101	5	100	0	.	90
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	30935048	30935048	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF536	NM_014717	exon2	c.C579T	p.R193R	.	.	50	12	32	0	.	144
ZNF571	51276	bcgsc.ca	37	19	38056451	38056451	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF571	NM_016536	exon4	c.A879G	p.Q293Q	.	.	151	6	119	0	.	90
ZNF728	388523	broad.mit.edu	37	19	23159811	23159811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001267716	exon4	c.A328G	p.N110D	.	.	296	7	275	0	.	.
ZNF736	728927	ucsc.edu	37	7	63809447	63809447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001170905	exon5	c.T1206G	p.C402W	.	.	43	4	64	0	.	.
ZNF761	388561	broad.mit.edu	37	19	53959937	53959937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF761	NM_001008401	exon7	c.A2176G	p.T726A	.	.	128	6	149	1	.	91
ZNF850	342892	bcgsc.ca	37	19	37238864	37238864	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001193552	exon5	c.A3078G	p.Q1026Q	.	.	15	3	33	0	.	.
ZP3	7784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76062261	76062261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZP3	NM_001110354	exon3	c.G449T	p.S150I	.	.	103	19	95	0	.	90
