Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA12	26154	bcgsc.ca	37	2	215910673	215910673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCA12	NM_173076	exon7	c.T760C	p.S254P	.	.	132	5	281	2	.	99
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48311639	48311639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCA13	NM_152701	exon17	c.A2376G	p.K792K	.	.	81	11	159	0	.	521
ABCC6	368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16244451	16244451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCC6	NM_001171	exon30	c.G4387T	p.V1463L	.	.	57	24	89	0	.	93
ABHD1	84696	bcgsc.ca	37	2	27351471	27351471	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABHD1	NM_032604	exon2	c.275+2T>C	.	.	.	129	7	176	1	.	90
ADAMTS18	170692	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77401479	77401479	+	Missense_Mutation	SNP	G	G	A	rs35701343	byfrequency	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ADAMTS18	NM_199355	exon4	c.C637T	p.R213W	.	.	126	63	216	1	G|0.994;A|0.006	1036
ADD3	120	bcgsc.ca	37	10	111892116	111892116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ADD3	NM_016824	exon14	c.T1786C	p.S596P	.	.	49	4	140	0	.	157
AFAP1L1	134265	bcgsc.ca	37	5	148695418	148695418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AFAP1L1	NM_001146337	exon10	c.A1055G	p.D352G	.	.	80	7	93	0	.	136
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416248	105416248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AHNAK2	NM_138420	exon7	c.A5540G	p.D1847G	.	.	194	44	335	0	.	47
AHNAK	79026	bcgsc.ca	37	11	62286065	62286065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AHNAK	NM_001620	exon5	c.G15824A	p.G5275E	.	.	57	4	88	0	.	109
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86236558	86236558	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AKAP13	NM_006738	exon17	c.A5352G	p.K1784K	.	.	47	4	108	0	.	258
AKAP6	9472	bcgsc.ca	37	14	33292493	33292493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AKAP6	NM_004274	exon13	c.T5474C	p.M1825T	.	.	82	4	143	0	.	733
AKR7L	246181	ucsc.edu	37	1	19595825	19595825	+	RNA	SNP	G	G	A	rs200837266	byfrequency	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AKR7L	.	.	.	.	.	.	76	2	160	0	G|0.996;A|0.004	90
ALOXE3	59344	bcgsc.ca	37	17	8018329	8018329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ALOXE3	NM_001165960	exon5	c.A877G	p.S293G	.	.	96	5	242	0	.	229
ALPK2	115701	bcgsc.ca	37	18	56203810	56203810	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ALPK2	NM_052947	exon5	c.A3609G	p.E1203E	.	.	44	4	72	0	.	765
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202633600	202633600	+	Silent	SNP	T	T	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ALS2	NM_001135745	exon2	c.A9C	p.S3S	.	.	72	22	140	0	.	275
AMN1	196394	bcgsc.ca	37	12	31854930	31854930	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001113402	exon3	c.T183C	p.P61P	.	.	66	4	96	0	.	.
ANAPC5	51433	bcgsc.ca	37	12	121756302	121756302	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANAPC5	NM_001137559	exon15	c.1409+2T>C	.	.	.	87	5	164	0	.	290
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27352965	27352965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANKRD26	NM_014915	exon12	c.G1315T	p.G439W	.	.	122	45	211	0	.	138
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79503384	79503384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANXA3	NM_005139	exon5	c.G252A	p.M84I	.	.	157	62	304	0	.	90
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161017651	161017651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ARHGAP30	NM_001025598	exon12	c.T3160A	p.S1054T	.	.	79	35	114	0	.	25
ARHGAP44	9912	bcgsc.ca	37	17	12798268	12798268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ARHGAP44	NM_014859	exon2	c.C65A	p.T22K	.	.	62	4	225	0	.	90
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73168941	73168941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001080479	exon22	c.C2684T	p.P895L	.	.	158	50	172	0	.	.
ARID3B	10620	ucsc.edu	37	15	74882331	74882331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ARID3B	NM_006465	exon5	c.A868G	p.T290A	.	.	45	4	80	2	.	90
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	108172499	108172499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATM	NM_000051	exon35	c.A5302G	p.R1768G	.	.	113	15	180	0	.	3419
ATP10A	57194	bcgsc.ca	37	15	25928620	25928620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATP10A	NM_024490	exon17	c.T3305C	p.L1102P	.	.	77	4	142	0	.	139
ATP8A2	51761	bcgsc.ca	37	13	26411327	26411327	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATP8A2	NM_016529	exon29	c.T2781C	p.T927T	.	.	64	4	106	0	.	138
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50346419	50346419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATP9A	NM_006045	exon2	c.A167T	p.N56I	.	.	74	23	140	0	.	94
ATP9B	374868	bcgsc.ca	37	18	77089274	77089274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATP9B	NM_198531	exon16	c.A1907G	p.E636G	.	.	63	4	97	1	.	93
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	188	1	282	1	.	90
BAHCC1	57597	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79409035	79409035	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BAHCC1	.	.	.	.	.	.	46	7	57	0	.	23
BAIAP2	10458	ucsc.edu	37	17	79090092	79090092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BAIAP2	NM_017451	exon15	c.T1646C	p.L549P	.	.	44	4	64	0	.	90
BAZ2A	11176	bcgsc.ca	37	12	56994534	56994534	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BAZ2A	NM_013449	exon23	c.A4539G	p.T1513T	.	.	137	6	184	3	.	22
BBS2	583	bcgsc.ca	37	16	56543880	56543880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BBS2	NM_031885	exon5	c.A601G	p.T201A	.	.	132	5	203	1	.	91
BDP1	55814	bcgsc.ca	37	5	70818195	70818195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BDP1	NM_018429	exon23	c.A5071G	p.R1691G	.	.	196	6	366	0	.	92
BIK	638	hgsc.bcm.edu	37	22	43525235	43525252	+	In_Frame_Del	DEL	TGCTGCTGGCGCTGCTGC	TGCTGCTGGCGCTGCTGC	-	rs78298603	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	TGCTGCTGGCGCTGCTGC	TGCTGCTGGCGCTGCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BIK	NM_001197	exon5	c.407_424del	p.136_142del	.	.	39	11	62	0	.	651
BRCA2	675	bcgsc.ca	37	13	32931963	32931963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BRCA2	NM_000059	exon16	c.T7702C	p.F2568L	.	.	60	4	162	0	.	3153
C1orf198	84886	bcgsc.ca	37	1	230991458	230991458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	C1orf198	NM_032800	exon2	c.A340G	p.T114A	.	.	179	6	306	0	.	90
C1orf85	112770	bcgsc.ca	37	1	156264626	156264626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	C1orf85	NM_001256608	exon2	c.C302A	p.S101Y	.	.	80	5	120	0	.	92
C20orf196	149840	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	5844104	5844104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	C20orf196	NM_152504	exon3	c.C613G	p.L205V	.	.	64	7	115	0	.	90
CACNA2D4	93589	ucsc.edu	37	12	1953595	1953595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CACNA2D4	NM_172364	exon25	c.T2443C	p.F815L	.	.	57	4	76	1	.	23
CACNB1	782	bcgsc.ca	37	17	37333778	37333778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CACNB1	NM_199247	exon13	c.A1292G	p.D431G	.	.	68	4	111	0	.	154
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152732958	152732958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CACNB4	NM_001145798	exon5	c.G503C	p.R168T	.	.	63	28	279	0	.	24
CAMTA2	23125	ucsc.edu	37	17	4877719	4877719	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CAMTA2	NM_001171167	exon12	c.G2046A	p.G682G	.	.	54	4	106	1	.	91
CARD11	84433	broad.mit.edu	37	7	2984169	2984169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CARD11	NM_032415	exon5	c.G361C	p.E121Q	.	.	31	5	49	0	.	870
CATSPER2	117155	bcgsc.ca	37	15	43927952	43927952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CATSPER2	NM_054020	exon9	c.A1094G	p.D365G	.	.	173	7	356	0	.	91
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	103381888	103381888	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001146197	exon4	c.G21159A	p.K7053K	.	.	119	9	190	0	.	.
CDKN1B	1027	broad.mit.edu;bcgsc.ca	37	12	12871889	12871889	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CDKN1B	NM_004064	exon2	c.605+1G>A	.	.	.	32	16	40	0	.	1271
CEP104	9731	bcgsc.ca	37	1	3751527	3751527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CEP104	NM_014704	exon11	c.T1447C	p.F483L	.	.	142	6	232	0	.	92
CEP135	9662	bcgsc.ca	37	4	56830466	56830466	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CEP135	NM_025009	exon7	c.A726G	p.E242E	.	.	182	7	303	0	.	94
CEP152	22995	bcgsc.ca	37	15	49081070	49081070	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CEP152	NM_014985	exon9	c.A1101G	p.T367T	.	.	151	6	430	2	.	70
CEP97	79598	hgsc.bcm.edu;bcgsc.ca	37	3	101481359	101481360	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CEP97	NM_024548	exon10	c.1848_1849insA	p.I616fs	.	.	281	51	511	0	.	70
CHD7	55636	bcgsc.ca	37	8	61769119	61769119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CHD7	NM_017780	exon34	c.T7280C	p.L2427P	.	.	47	4	82	0	.	141
CHRNA6	8973	bcgsc.ca	37	8	42612104	42612104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CHRNA6	NM_004198	exon4	c.A341G	p.K114R	.	.	48	5	121	0	.	90
CLCNKA	1187	broad.mit.edu	37	1	16356554	16356554	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CLCNKA	NM_004070	exon14	c.G1392A	p.G464G	.	.	84	5	111	0	.	91
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	71043634	71043634	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CLEC4F	NM_173535	exon4	c.G879C	p.Q293H	.	.	297	19	428	0	.	95
CMTM4	146223	broad.mit.edu	37	16	66656110	66656110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CMTM4	NM_178818	exon4	c.G478T	p.A160S	.	.	47	5	82	0	.	227
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56708752	56708752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CNPY2	NM_014255	exon4	c.89-2A>G	.	.	.	82	32	129	0	.	68
COPS4	51138	bcgsc.ca	37	4	83970470	83970470	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	COPS4	NM_016129	exon3	c.G306A	p.Q102Q	.	.	76	7	108	0	.	226
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	6518	6518	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	ENST00000361624	exon1	c.C615T	p.G205G	.	.	304	76	79	0	.	.
COX3	5742	broad.mit.edu	37	MT	9925	9925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	ENST00000362079	exon1	c.G719A	p.X240X	.	.	289	12	81	0	.	.
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17038989	17038989	+	Missense_Mutation	SNP	G	G	A	rs200032712		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CPAMD8	NM_015692	exon25	c.C3341T	p.P1114L	.	.	59	23	46	0	G|0.999;A|0.001	141
CPLX2	10814	bcgsc.ca	37	5	175306953	175306953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CPLX2	NM_006650	exon5	c.G310A	p.G104S	.	.	169	6	253	0	.	227
CREB5	9586	ucsc.edu;bcgsc.ca	37	7	28547332	28547332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CREB5	NM_182898	exon4	c.C268A	p.Q90K	.	.	72	10	112	1	.	92
CSE1L	1434	bcgsc.ca	37	20	47686770	47686770	+	Missense_Mutation	SNP	T	T	C	rs184951470	by1000genomes	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CSE1L	NM_001256135	exon8	c.T704C	p.M235T	.	.	109	6	152	0	T|0.999;C|0.000	290
CTNNA2	1496	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80101327	80101327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CTNNA2	NM_001164883	exon6	c.A711G	p.R237R	.	.	55	7	109	0	.	368
DAPK1	1612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90272970	90272970	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DAPK1	NM_004938	exon18	c.G1851A	p.A617A	.	.	16	5	64	0	.	359
DGCR8	54487	bcgsc.ca	37	22	20080344	20080344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DGCR8	NM_022720	exon8	c.A1619G	p.E540G	.	.	68	4	96	0	.	90
DGKH	160851	bcgsc.ca	37	13	42784752	42784752	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DGKH	NM_001204504	exon25	c.T2865C	p.T955T	.	.	56	5	190	0	.	652
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001082488	exon8	c.T653C	p.I218T	.	.	502	180	818	2	.	.
DLK2	65989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43418506	43418506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DLK2	NM_023932	exon6	c.T923C	p.V308A	.	.	114	31	135	1	.	68
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	31525446	31525446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DMD	NM_004006	exon56	c.A8342G	p.N2781S	.	.	168	7	287	1	.	265
DMXL2	23312	broad.mit.edu	37	15	51827944	51827944	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DMXL2	NM_001174117	exon13	c.T2352C	p.A784A	.	.	318	6	837	0	.	99
DNAH2	146754	bcgsc.ca	37	17	7695312	7695312	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DNAH2	NM_020877	exon44	c.T6978C	p.C2326C	.	.	74	4	216	1	.	102
DNAJC1	64215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22048461	22048461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DNAJC1	NM_022365	exon11	c.A1234T	p.T412S	.	.	168	53	312	0	.	226
DPP3	10072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66249912	66249912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DPP3	NM_001256670	exon2	c.G241T	p.A81S	.	.	44	9	36	0	.	46
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102466376	102466376	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DYNC1H1	NM_001376	exon17	c.G3855A	p.G1285G	.	.	65	25	116	0	.	98
EIF2A	83939	bcgsc.ca	37	3	150264606	150264606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF2A	NM_032025	exon1	c.C17T	p.P6L	.	.	47	4	48	0	.	22
EIF2AK4	440275	bcgsc.ca	37	15	40268695	40268695	+	Silent	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF2AK4	NM_001013703	exon12	c.C1899A	p.I633I	.	.	46	4	84	0	.	757
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40268641	40268641	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF2AK4	NM_001013703	exon12	c.C1845T	p.C615C	.	.	62	34	87	0	.	757
EIF3A	8661	bcgsc.ca	37	10	120820333	120820333	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF3A	NM_003750	exon9	c.A1251G	p.Q417Q	.	.	55	4	168	1	.	226
EIF3L	51386	bcgsc.ca	37	22	38271888	38271888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF3L	NM_016091	exon10	c.A947G	p.Y316C	.	.	88	5	157	0	.	69
EMP2	2013	ucsc.edu;bcgsc.ca	37	16	10626944	10626944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EMP2	NM_001424	exon5	c.T322C	p.C108R	.	.	39	4	34	0	.	90
EPB41L2	2037	bcgsc.ca	37	6	131216144	131216144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EPB41L2	NM_001135554	exon9	c.A1352G	p.K451R	.	.	65	4	128	0	.	91
EPB42	2038	bcgsc.ca	37	15	43498594	43498594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EPB42	NM_000119	exon10	c.T1642C	p.Y548H	.	.	56	4	139	0	.	92
ERLIN2	11160	bcgsc.ca	37	8	37611472	37611472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ERLIN2	NM_007175	exon12	c.A859G	p.K287E	.	.	51	4	163	0	.	90
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	29694814	29694814	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EWSR1	NM_013986	exon15	c.G1524A	p.R508R	.	.	61	23	73	0	.	3375
FAM162B	221303	broad.mit.edu;bcgsc.ca	37	6	117083206	117083206	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FAM162B	NM_001085480	exon3	c.A324G	p.K108K	.	.	129	6	355	0	.	22
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89813300	89813300	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FANCA	NM_000135	exon35	c.3349-2A>G	.	.	.	45	4	38	0	.	1130
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242343251	242343251	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FARP2	NM_014808	exon3	c.C192T	p.C64C	.	.	100	20	192	0	.	93
FAT3	120114	broad.mit.edu;bcgsc.ca	37	11	92534438	92534438	+	Silent	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FAT3	NM_001008781	exon9	c.G8259C	p.G2753G	.	.	98	6	107	0	.	73
FCAR	2204	broad.mit.edu;bcgsc.ca	37	19	55386823	55386823	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FCAR	NM_002000	exon2	c.70+2T>C	.	.	.	112	54	170	1	.	92
FCN3	8547	bcgsc.ca	37	1	27697360	27697360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FCN3	NM_003665	exon6	c.A497G	p.E166G	.	.	67	4	76	0	.	90
FEM1B	10116	bcgsc.ca	37	15	68583421	68583421	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FEM1B	NM_015322	exon2	c.T1725C	p.T575T	.	.	67	6	127	2	.	90
FGFBP2	83888	bcgsc.ca	37	4	15964719	15964719	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FGFBP2	NM_031950	exon1	c.T34C	p.L12L	.	.	56	4	108	0	.	22
FRS2	10818	bcgsc.ca	37	12	69965192	69965192	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FRS2	NM_001042555	exon8	c.T390C	p.P130P	.	.	70	4	112	0	.	658
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41738386	41738386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FRS3	NM_006653	exon7	c.C1450G	p.R484G	.	.	82	29	151	0	.	92
FUT3	2525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5844841	5844841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FUT3	NM_001097640	exon3	c.C10T	p.L4L	.	.	102	13	173	0	.	90
G6PC	2538	bcgsc.ca	37	17	41063001	41063001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	G6PC	NM_000151	exon5	c.T632C	p.L211P	.	.	91	5	237	3	.	292
GAA	2548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78091993	78091993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GAA	NM_001079803	exon19	c.G2483T	p.G828V	.	.	70	27	72	0	.	91
GALNTL6	442117	bcgsc.ca	37	4	173150871	173150871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GALNTL6	NM_001034845	exon3	c.A203G	p.D68G	.	.	47	4	86	0	.	137
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120602144	120602144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GCN1L1	NM_006836	exon18	c.A1844G	p.H615R	.	.	85	32	96	0	.	94
GHR	2690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	42713546	42713546	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GHR	NM_001242399	exon8	c.G821A	p.W274X	.	.	158	49	425	0	.	659
GLCE	26035	ucsc.edu;bcgsc.ca	37	15	69548133	69548133	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GLCE	.	.	.	.	.	.	98	21	228	0	.	92
GNL1	2794	bcgsc.ca	37	6	30522852	30522852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GNL1	NM_005275	exon3	c.A356G	p.E119G	.	.	148	6	189	1	.	93
GPR152	390212	hgsc.bcm.edu	37	11	67219120	67219121	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GPR152	NM_206997	exon1	c.1076_1077insC	p.Q359fs	.	.	181	12	205	0	.	90
GPR4	2828	bcgsc.ca	37	19	46094145	46094145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GPR4	NM_005282	exon2	c.T980C	p.L327P	.	.	84	9	124	11	.	92
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757477	54757477	+	Silent	SNP	G	G	A	rs143236488		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GPR84	NM_020370	exon2	c.C159T	p.T53T	.	.	137	53	158	0	G|0.999;A|0.000	523
GRIPAP1	56850	bcgsc.ca	37	X	48855854	48855854	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GRIPAP1	NM_020137	exon2	c.T105C	p.G35G	.	.	70	4	80	0	.	227
GTF2E1	2960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120469757	120469757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GTF2E1	NM_005513	exon2	c.G358A	p.D120N	.	.	116	61	155	0	.	91
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27517278	27517278	+	Missense_Mutation	SNP	G	G	T	rs140459536	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GTF3C1	NM_001520	exon10	c.C1712A	p.A571E	.	.	105	41	148	0	G|1.000;A|0.000	94
GUF1	60558	bcgsc.ca	37	4	44690074	44690074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GUF1	NM_021927	exon9	c.A989G	p.E330G	.	.	64	4	110	1	.	91
H2AFJ	55766	ucsc.edu	37	12	14927540	14927540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	H2AFJ	NM_177925	exon1	c.G136T	p.A46S	.	.	46	4	80	0	.	69
HDGFRP2	0	ucsc.edu	37	19	4475497	4475497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_032631	exon3	c.G205T	p.G69W	.	.	51	6	95	0	.	.
HECTD1	25831	bcgsc.ca	37	14	31583545	31583545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HECTD1	NM_015382	exon31	c.A5620G	p.I1874V	.	.	288	8	541	0	.	570
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62191577	62191577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001037335	exon18	c.T7604C	p.L2535P	.	.	33	4	35	0	.	.
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63991120	63991120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HERC1	NM_003922	exon26	c.A4712G	p.N1571S	.	.	93	17	158	0	.	666
HERC5	51191	bcgsc.ca	37	4	89383356	89383356	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HERC5	NM_016323	exon4	c.C537T	p.T179T	.	.	113	5	182	0	.	664
HHLA2	11148	bcgsc.ca	37	3	108095342	108095342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HHLA2	NM_007072	exon9	c.A1162G	p.R388G	.	.	108	5	151	0	.	1
HIST1H4K	8362	broad.mit.edu;mdanderson.org	37	6	27799305	27799305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HIST1H4K	NM_003541	exon1	c.A1C	p.M1L	.	.	138	37	223	1	.	90
HOOK2	29911	ucsc.edu	37	19	12881985	12881985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HOOK2	NM_001100176	exon9	c.A749G	p.E250G	.	.	61	9	110	9	.	92
HPS4	89781	bcgsc.ca	37	22	26849301	26849301	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HPS4	NM_022081	exon14	c.T2025C	p.P675P	.	.	108	5	162	1	.	90
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70891690	70891690	+	Silent	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HYDIN	NM_001270974	exon72	c.C12213A	p.V4071V	.	.	127	40	289	0	.	92
IFT172	26160	bcgsc.ca	37	2	27676517	27676517	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	IFT172	NM_015662	exon34	c.A3801G	p.E1267E	.	.	99	5	175	0	.	154
IGLL5	100423062	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	23237760	23237760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001178126	exon3	c.C531A	p.S177R	.	.	208	77	313	2	.	.
IGSF3	3321	bcgsc.ca	37	1	117158801	117158801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	IGSF3	NM_001542	exon3	c.A322G	p.T108A	.	.	250	7	388	0	.	92
IL6ST	3572	bcgsc.ca	37	5	55236970	55236970	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	IL6ST	NM_002184	exon17	c.A2697G	p.E899E	.	.	228	7	363	1	.	290
IQCA1	79781	bcgsc.ca	37	2	237240235	237240235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	IQCA1	NM_001270585	exon18	c.T2164C	p.W722R	.	.	61	4	90	1	.	23
ISLR	3671	bcgsc.ca	37	15	74467938	74467938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ISLR	NM_201526	exon2	c.C739A	p.L247M	.	.	47	4	104	0	.	155
ITGB4	3691	ucsc.edu	37	17	73738509	73738509	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ITGB4	NM_001005731	exon24	c.A2721G	p.E907E	.	.	49	4	46	0	.	227
KANK4	163782	bcgsc.ca	37	1	62713275	62713275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KANK4	NM_181712	exon9	c.T2752C	p.C918R	.	.	62	4	116	0	.	74
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39086700	39086700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KCNJ6	NM_002240	exon3	c.C760T	p.P254S	.	.	179	33	321	0	.	91
KCNMB2	10242	bcgsc.ca	37	3	178543441	178543441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KCNMB2	NM_005832	exon4	c.A122G	p.K41R	.	.	125	5	184	2	.	91
KDM2B	84678	bcgsc.ca	37	12	121880828	121880828	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KDM2B	NM_032590	exon18	c.A2571G	p.K857K	.	.	60	4	129	0	.	638
KIAA1217	56243	bcgsc.ca	37	10	24822133	24822133	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KIAA1217	NM_019590	exon16	c.A3381G	p.E1127E	.	.	52	4	101	0	.	98
KLF12	11278	bcgsc.ca	37	13	74420450	74420450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KLF12	NM_007249	exon4	c.A184G	p.K62E	.	.	63	4	250	0	.	91
KLHL18	23276	bcgsc.ca	37	3	47371503	47371503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KLHL18	NM_025010	exon4	c.T464C	p.L155P	.	.	87	5	127	0	.	90
KSR2	283455	bcgsc.ca	37	12	117907563	117907563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KSR2	NM_173598	exon19	c.A2663G	p.E888G	.	.	117	7	171	0	.	1449
LANCL1	10314	bcgsc.ca	37	2	211305403	211305403	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LANCL1	NM_001136574	exon6	c.T609C	p.S203S	.	.	187	7	296	0	.	90
LIG4	3981	bcgsc.ca	37	13	108860986	108860986	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LIG4	NM_206937	exon3	c.T2631C	p.A877A	.	.	87	6	152	2	.	659
LINC00521	256369	ucsc.edu	37	14	94465947	94465947	+	RNA	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	.	.	.	49	5	65	0	.	.
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27949442	27949442	+	Missense_Mutation	SNP	G	G	T	rs199551773	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LINGO2	NM_001258282	exon7	c.C1228A	p.P410T	.	.	108	16	192	0	G|0.999;A|0.001	516
LOC100506713	0	ucsc.edu;bcgsc.ca	37	17	6905848	6905848	+	RNA	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	.	.	.	35	4	84	0	.	.
LRGUK	136332	bcgsc.ca	37	7	133933725	133933725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LRGUK	NM_144648	exon18	c.A2095G	p.T699A	.	.	62	4	100	0	.	227
LRRC16A	55604	bcgsc.ca	37	6	25605053	25605053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LRRC16A	NM_001173977	exon34	c.A3566G	p.D1189G	.	.	53	4	95	0	.	137
LUC7L	55692	bcgsc.ca	37	16	242987	242987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LUC7L	NM_201412	exon7	c.A715G	p.R239G	.	.	78	5	164	0	.	90
MACF1	23499	bcgsc.ca	37	1	39901319	39901319	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MACF1	NM_012090	exon66	c.A11688G	p.E3896E	.	.	156	6	235	0	.	165
MAP2K6	5608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67521065	67521065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MAP2K6	NM_002758	exon9	c.C687T	p.L229L	.	.	150	86	150	0	.	1404
MKI67	4288	ucsc.edu;bcgsc.ca	37	10	129913987	129913987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MKI67	NM_002417	exon7	c.A685G	p.N229D	.	.	40	4	77	0	.	519
MKNK1	8569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47028365	47028365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MKNK1	NM_003684	exon11	c.G919A	p.A307T	.	.	59	11	77	0	.	978
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122623457	122623457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MLXIP	NM_014938	exon15	c.G2480A	p.R827Q	.	.	210	12	389	0	.	92
MNAT1	4331	bcgsc.ca	37	14	61435013	61435013	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MNAT1	NM_002431	exon8	c.T876C	p.A292A	.	.	150	6	207	0	.	523
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56355395	56355395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MPO	NM_000250	exon7	c.C997T	p.L333F	.	.	54	23	61	0	.	156
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60743465	60743465	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MRC2	NM_006039	exon3	c.C531T	p.T177T	.	.	50	33	76	0	.	117
MRPS12	6183	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39421984	39421984	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MRPS12	NM_033362	exon2	c.49+1G>A	.	.	.	67	6	127	0	.	90
MTF2	22823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	93599749	93599749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MTF2	NM_007358	exon14	c.1421delA	p.Y474fs	.	.	121	50	190	0	.	92
MTUS1	57509	bcgsc.ca	37	8	17554812	17554812	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MTUS1	NM_020749	exon1	c.T75C	p.L25L	.	.	64	4	165	0	.	92
MUC16	94025	bcgsc.ca	37	19	9057434	9057434	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MUC16	NM_024690	exon3	c.T30012C	p.P10004P	.	.	144	5	203	0	.	566
MYBL2	4605	bcgsc.ca	37	20	42333863	42333863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYBL2	NM_002466	exon9	c.T1370C	p.L457P	.	.	135	6	226	1	.	415
MYLK	4638	bcgsc.ca	37	3	123337607	123337607	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYLK	NM_053025	exon33	c.C5379T	p.S1793S	.	.	84	5	156	1	.	365
MYO5C	55930	bcgsc.ca	37	15	52564815	52564815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYO5C	NM_018728	exon6	c.A712G	p.S238G	.	.	126	6	355	1	.	145
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76858899	76858899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYO7A	NM_001127179	exon4	c.C188G	p.S63W	.	.	54	24	69	0	.	138
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	1946920	1946920	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYT1L	NM_015025	exon9	c.C339T	p.D113D	.	.	509	26	555	0	.	95
NAAA	27163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76861223	76861223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NAAA	NM_014435	exon2	c.G302T	p.G101V	.	.	57	22	121	0	.	91
NBEAP1	606	broad.mit.edu	37	15	20876460	20876460	+	RNA	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	.	.	.	468	10	814	1	.	.
NEO1	4756	ucsc.edu;bcgsc.ca	37	15	73541532	73541532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NEO1	NM_001172623	exon10	c.G1738T	p.G580W	.	.	44	4	88	0	.	116
NINL	22981	ucsc.edu;bcgsc.ca	37	20	25485596	25485596	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NINL	NM_025176	exon6	c.C636T	p.S212S	.	.	46	4	96	0	.	94
NLGN4X	57502	broad.mit.edu	37	X	5811432	5811432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NLGN4X	NM_181332	exon6	c.G1877T	p.R626L	.	.	333	6	647	0	.	195
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101580593	101580593	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NPAS2	NM_002518	exon8	c.T672C	p.V224V	.	.	88	31	138	0	.	94
NRCAM	4897	bcgsc.ca	37	7	107807499	107807499	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NRCAM	NM_001037132	exon27	c.A3333G	p.K1111K	.	.	102	5	178	0	.	156
NRG2	9542	bcgsc.ca	37	5	139231338	139231338	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NRG2	NM_013982	exon10	c.A1647G	p.S549S	.	.	79	5	124	0	.	526
NRK	203447	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105152837	105152837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NRK	NM_198465	exon13	c.C1204A	p.Q402K	.	.	72	8	127	2	.	630
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228487124	228487124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OBSCN	NM_001271223	exon50	c.G13375A	p.V4459M	.	.	90	32	217	0	.	403
OR2H2	7932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29556102	29556102	+	Silent	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR2H2	NM_007160	exon1	c.C381A	p.P127P	.	.	122	40	180	0	.	22
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4968139	4968139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR51A4	NM_001005329	exon1	c.192delT	p.F64fs	.	.	599	135	1236	0	.	71
OR51E2	81285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4703712	4703712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR51E2	NM_030774	exon2	c.T230A	p.M77K	.	.	34	15	94	0	.	502
PACS1	55690	broad.mit.edu;bcgsc.ca	37	11	65988182	65988182	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PACS1	NM_018026	exon9	c.G1119A	p.L373L	.	.	137	6	171	0	.	74
PAPD4	167153	bcgsc.ca	37	5	78981041	78981041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PAPD4	NM_173797	exon16	c.A1400G	p.N467S	.	.	137	5	233	0	.	69
PAXBP1	94104	broad.mit.edu	37	21	34133419	34133419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_013329	exon5	c.T926A	p.L309H	.	.	180	5	281	0	.	.
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70315174	70315174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PCBP1	NM_006196	exon1	c.T299A	p.L100Q	.	.	30	10	57	0	.	226
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249239	140249239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PCDHA11	NM_018902	exon1	c.C551T	p.T184I	.	.	58	9	58	0	.	67
PDE4DIP	9659	bcgsc.ca	37	1	144903188	144903188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PDE4DIP	NM_001002811	exon17	c.A3193G	p.T1065A	.	.	52	4	91	1	.	663
PDZD8	118987	bcgsc.ca	37	10	119049827	119049827	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PDZD8	NM_173791	exon4	c.T1131C	p.V377V	.	.	52	4	140	0	.	90
PGK1	5230	bcgsc.ca	37	X	77369518	77369518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PGK1	NM_000291	exon4	c.T278C	p.V93A	.	.	151	5	197	1	.	228
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49753721	49753721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PGK2	NM_138733	exon1	c.A1180T	p.T394S	.	.	109	54	153	0	.	91
PHF21B	112885	bcgsc.ca	37	22	45312164	45312164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PHF21B	NM_138415	exon4	c.A560G	p.N187S	.	.	57	4	98	0	.	93
PHLPP1	23239	bcgsc.ca	37	18	60612380	60612380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_194449	exon12	c.T3200C	p.L1067P	.	.	60	4	103	0	.	.
PI4KA	5297	bcgsc.ca	37	22	21083673	21083673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PI4KA	NM_058004	exon39	c.A4610G	p.E1537G	.	.	118	6	193	0	.	454
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46672428	46672428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLA2G7	NM_005084	exon12	c.C1195G	p.H399D	.	.	275	143	385	0	.	90
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9401994	9401994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLCB4	NM_001172646	exon26	c.G2205T	p.E735D	.	.	116	48	168	0	.	274
PLEKHH1	57475	bcgsc.ca	37	14	68029130	68029130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLEKHH1	NM_020715	exon7	c.G782T	p.R261I	.	.	75	5	135	0	.	22
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129275500	129275500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLXND1	NM_015103	exon35	c.T5621C	p.M1874T	.	.	148	55	179	0	.	90
PPP1R21	129285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48718183	48718183	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_152994	exon15	c.G1473A	p.L491L	.	.	134	9	218	0	.	.
PPP4R1	9989	bcgsc.ca	37	18	9563513	9563513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PPP4R1	NM_001042388	exon12	c.T1609C	p.S537P	.	.	78	4	126	0	.	227
PRELID1	27166	bcgsc.ca	37	5	176733176	176733176	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PRELID1	NM_013237	exon4	c.A510G	p.Q170Q	.	.	155	6	244	1	.	90
PRKCH	5583	bcgsc.ca	37	14	61858005	61858005	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PRKCH	NM_006255	exon2	c.A426G	p.E142E	.	.	64	4	157	0	.	1063
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	139193051	139193051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PSD2	NM_032289	exon3	c.G529T	p.E177X	.	.	96	50	144	0	.	91
PTK7	5754	bcgsc.ca	37	6	43112956	43112956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PTK7	NM_001270398	exon16	c.A2450G	p.E817G	.	.	56	4	95	2	.	1493
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70960239	70960239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PTPRB	NM_001109754	exon15	c.G3880C	p.E1294Q	.	.	349	142	543	0	.	226
PUM1	9698	bcgsc.ca	37	1	31465463	31465463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PUM1	NM_014676	exon7	c.T932C	p.L311P	.	.	73	4	101	1	.	92
PYGM	5837	broad.mit.edu	37	11	64519975	64519975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PYGM	NM_005609	exon13	c.G1520T	p.R507L	.	.	108	4	150	1	.	92
RAB40B	10966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80615904	80615904	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RAB40B	NM_006822	exon6	c.672delC	p.S224fs	.	.	164	23	191	0	.	227
RALGAPA2	57186	bcgsc.ca	37	20	20475897	20475897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RALGAPA2	NM_020343	exon36	c.A5231G	p.E1744G	.	.	98	6	171	0	.	24
RASEF	158158	bcgsc.ca	37	9	85605362	85605362	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RASEF	NM_152573	exon16	c.T2061C	p.C687C	.	.	79	5	188	0	.	280
RBM6	10180	bcgsc.ca	37	3	50114560	50114560	+	Silent	SNP	C	C	A	rs149053073	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RBM6	NM_005777	exon21	c.C3366A	p.L1122L	.	.	63	4	129	0	C|1.000;T|0.000	280
RIOK2	55781	bcgsc.ca	37	5	96506958	96506958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RIOK2	NM_001159749	exon6	c.T731C	p.M244T	.	.	142	5	208	0	.	419
RNF10	9921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	121013648	121013648	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RNF10	NM_014868	exon16	c.A2254T	p.N752Y	.	.	115	13	187	0	.	227
RNF175	285533	bcgsc.ca	37	4	154644597	154644597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RNF175	NM_173662	exon5	c.T415C	p.W139R	.	.	133	5	228	0	.	47
RNF20	56254	bcgsc.ca	37	9	104323126	104323126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RNF20	NM_019592	exon17	c.A2426G	p.E809G	.	.	106	6	188	0	.	231
ROS1	6098	bcgsc.ca	37	6	117639354	117639354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ROS1	NM_002944	exon37	c.T6002C	p.M2001T	.	.	57	4	134	0	.	1353
RPL9	6133	bcgsc.ca	37	4	39459827	39459827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	RPL9,upper_arm,malignant_melanoma,+1	RPL9	NM_000661	exon3	c.A149G	p.K50R	.	.	74	5	117	0	.	91
RPS6KA5	9252	bcgsc.ca	37	14	91369170	91369170	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RPS6KA5	NM_182398	exon9	c.T1101C	p.S367S	.	.	111	5	146	0	.	979
RPS6KB1	6198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58013587	58013587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RPS6KB1	NM_001272043	exon11	c.A990T	p.R330S	.	.	257	155	302	1	.	1041
SARDH	1757	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136582451	136582451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SARDH	NM_007101	exon8	c.C1147A	p.P383T	.	.	33	12	56	0	.	90
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77134131	77134131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SCAPER	NM_020843	exon4	c.G337A	p.A113T	.	.	151	87	271	0	.	137
SEC14L3	266629	hgsc.bcm.edu	37	22	30857663	30857664	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SEC14L3	NM_174975	exon10	c.790_791insG	p.I264fs	.	.	93	11	129	0	.	95
SEC24D	9871	bcgsc.ca	37	4	119689378	119689378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SEC24D	NM_014822	exon9	c.T1130C	p.I377T	.	.	186	6	231	0	.	90
SERPINB5	5268	bcgsc.ca	37	18	61160303	61160303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SERPINB5	NM_002639	exon5	c.A542G	p.K181R	.	.	69	4	100	0	.	651
SF3A3	10946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38453345	38453345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SF3A3	NM_006802	exon4	c.G203A	p.R68Q	.	.	131	54	220	0	.	90
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52001391	52001391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SIGLEC12	NM_053003	exon5	c.G1286T	p.G429V	.	.	66	17	86	0	.	96
SIRPD	128646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1532400	1532400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SIRPD	NM_178460	exon2	c.T358C	p.F120L	.	.	79	24	137	0	.	227
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82606130	82606130	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC10A5	NM_001010893	exon1	c.C1078T	p.L360L	.	.	47	13	130	0	.	90
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172691267	172691267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC25A12	NM_003705	exon7	c.G721T	p.G241C	.	.	47	8	112	0	.	90
SLC2A3	6515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8086448	8086448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC2A3	NM_006931	exon2	c.C66A	p.F22L	.	.	143	47	211	0	.	94
SLC4A7	9497	broad.mit.edu	37	3	27475573	27475573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC4A7	NM_001258379	exon6	c.A600G	p.I200M	.	.	132	4	234	1	.	94
SLC7A4	6545	ucsc.edu	37	22	21384338	21384338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC7A4	NM_004173	exon3	c.G1285A	p.G429S	.	.	47	4	102	2	.	279
SLC9A3	6550	bcgsc.ca	37	5	492156	492156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC9A3	NM_004174	exon2	c.T242C	p.V81A	.	.	40	5	60	0	.	90
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40839819	40839819	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SMAP2	NM_022733	exon1	c.G27A	p.V9V	.	.	124	47	198	0	.	68
SMG1	23049	bcgsc.ca	37	16	18846372	18846372	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SMG1	NM_015092	exon49	c.A8172G	p.Q2724Q	.	.	194	8	300	0	.	1160
SMPD1	6609	bcgsc.ca	37	11	6414464	6414464	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SMPD1	NM_000543	exon3	c.T1110C	p.A370A	.	.	185	8	347	0	.	90
SNAP47	116841	bcgsc.ca	37	1	227935699	227935699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SNAP47	NM_053052	exon2	c.A397G	p.N133D	.	.	88	5	127	1	.	91
SORBS2	8470	broad.mit.edu	37	4	186567866	186567866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SORBS2	NM_001145673	exon11	c.G1177A	p.E393K	.	.	175	6	281	2	.	91
SPAG5	10615	bcgsc.ca	37	17	26910958	26910958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SPAG5	NM_006461	exon14	c.T2459C	p.V820A	.	.	72	4	124	0	.	90
SPATA13	221178	bcgsc.ca	37	13	24868976	24868976	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SPATA13	NM_001166271	exon10	c.T3180C	p.A1060A	.	.	28	4	74	0	.	229
SPRY3	10251	broad.mit.edu	37	X	155004389	155004389	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SPRY3	NM_005840	exon2	c.A856T	p.K286X	.	.	136	8	262	0	.	136
STBD1	8987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77230589	77230589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STBD1	NM_003943	exon2	c.G513T	p.E171D	.	.	109	42	146	0	.	69
STK16	8576	bcgsc.ca	37	2	220111862	220111862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STK16	NM_001008910	exon4	c.A334G	p.R112G	.	.	97	5	162	1	.	333
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70652470	70652470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STOX1	NM_152709	exon4	c.T2948C	p.L983P	.	.	180	77	303	0	.	92
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	10894136	10894136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SYCP2L	NM_001040274	exon3	c.G115T	p.G39X	.	.	173	70	285	0	.	24
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70680629	70680629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAF1	NM_004606	exon37	c.A5435G	p.H1812R	.	.	90	67	146	0	.	900
TAF4	6874	bcgsc.ca	37	20	60578288	60578288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAF4	NM_003185	exon9	c.T2414C	p.L805P	.	.	108	6	244	2	.	93
TAS2R39	259285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142881187	142881187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAS2R39	NM_176881	exon1	c.C676A	p.L226M	.	.	181	12	260	0	.	1
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15642100	15642100	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TBC1D26	NM_178571	exon8	c.C453T	p.H151H	.	.	222	94	585	1	.	90
TCEB3	6924	ucsc.edu	37	1	24082423	24082423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TCEB3	NM_003198	exon8	c.G1960C	p.E654Q	.	.	91	6	141	0	.	91
TCF4	6925	bcgsc.ca	37	18	53018122	53018122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TCF4	NM_001243226	exon8	c.T788C	p.L263P	.	.	158	5	218	0	.	523
TDRD6	221400	bcgsc.ca	37	6	46659431	46659431	+	Missense_Mutation	SNP	T	T	C	rs149966301	byfrequency;alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TDRD6	NM_001168359	exon1	c.T3566C	p.L1189S	.	.	153	5	208	0	T|0.999;G|0.001	138
TDRD6	221400	bcgsc.ca	37	6	46659506	46659506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TDRD6	NM_001168359	exon1	c.A3641G	p.K1214R	.	.	128	5	196	0	.	138
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	166711893	166711893	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001122679	exon1	c.C51T	p.G17G	.	.	72	22	85	0	.	.
TEX261	113419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71215838	71215838	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TEX261	NM_144582	exon6	c.C483T	p.V161V	.	.	68	27	101	0	.	90
TGFBR3	7049	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92185522	92185522	+	Silent	SNP	G	G	A	rs2229500	byfrequency	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TGFBR3	NM_003243	exon9	c.C1341T	p.S447S	.	.	227	74	246	0	G|0.987;A|0.013	93
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	12195189	12195189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TIMP4	NM_003256	exon5	c.501delC	p.P167fs	.	.	105	23	202	0	.	226
TLN2	83660	bcgsc.ca	37	15	62939549	62939549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TLN2	NM_015059	exon1	c.A40G	p.N14D	.	.	47	4	109	0	.	573
TLR5	7100	bcgsc.ca	37	1	223285439	223285439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TLR5	NM_003268	exon6	c.A935G	p.K312R	.	.	233	7	393	0	.	525
TM9SF3	56889	bcgsc.ca	37	10	98321775	98321775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TM9SF3	NM_020123	exon4	c.T542C	p.V181A	.	.	52	4	148	1	.	90
TMC3	342125	bcgsc.ca	37	15	81654609	81654609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TMC3	NM_001080532	exon4	c.T346C	p.F116L	.	.	76	6	153	0	.	70
TMCO3	55002	bcgsc.ca	37	13	114152767	114152767	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TMCO3	NM_017905	exon3	c.A555G	p.E185E	.	.	57	4	114	0	.	90
TMEM106A	113277	bcgsc.ca	37	17	41368522	41368522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_145041	exon6	c.A484G	p.T162A	.	.	59	4	115	1	.	.
TMEM170A	124491	bcgsc.ca	37	16	75485702	75485702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TMEM170A	NM_145254	exon2	c.T169C	p.S57P	.	.	114	5	173	0	.	68
TMEM259	91304	bcgsc.ca	37	19	1011494	1011494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_033420	exon9	c.G1089T	p.M363I	.	.	11	4	28	0	.	.
TNFRSF25	8718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6522204	6522204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TNFRSF25	NM_148965	exon9	c.C802T	p.H268Y	.	.	102	35	146	0	.	714
TPM3	7170	bcgsc.ca	37	1	154148630	154148630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TPM3	NM_152263	exon3	c.A338G	p.K113R	.	.	91	7	161	0	.	416
TRIM71	131405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32915309	32915309	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRIM71	NM_001039111	exon2	c.853-1G>A	.	.	.	199	32	299	0	.	92
TRIOBP	11078	bcgsc.ca	37	22	38120965	38120965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRIOBP	NM_001039141	exon7	c.T2402C	p.L801P	.	.	209	18	324	3	.	136
TRMT10C	54931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101283884	101283884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_017819	exon2	c.G259A	p.D87N	.	.	118	44	193	0	.	.
TRPV4	59341	ucsc.edu;bcgsc.ca	37	12	110234363	110234363	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRPV4	NM_021625	exon7	c.G1299A	p.V433V	.	.	41	4	56	0	.	94
TRPV5	56302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142612521	142612521	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRPV5	NM_019841	exon10	c.C1242T	p.R414R	.	.	111	39	189	2	.	177
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768122	31768122	+	Silent	SNP	C	C	T	rs147790864	byfrequency	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TSHZ3	NM_020856	exon2	c.G2577A	p.T859T	.	.	92	34	165	0	C|0.998;T|0.002	232
TTC18	118491	bcgsc.ca	37	10	75072393	75072393	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TTC18	NM_145170	exon11	c.T1131C	p.C377C	.	.	65	4	79	0	.	92
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134751175	134751175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001200049	exon6	c.C541A	p.L181I	.	.	44	30	98	0	.	.
TTN	7273	bcgsc.ca	37	2	179497115	179497115	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TTN	NM_001267550	exon236	c.T43506C	p.P14502P	.	.	111	5	260	3	.	636
TTN	7273	bcgsc.ca	37	2	179596149	179596149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TTN	NM_001267550	exon59	c.A17344G	p.N5782D	.	.	160	6	310	0	.	636
TXK	7294	bcgsc.ca	37	4	48081949	48081949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TXK	NM_003328	exon11	c.G1153A	p.G385S	.	.	160	6	275	0	.	521
UGGT1	56886	bcgsc.ca	37	2	128917154	128917154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	UGGT1	NM_020120	exon23	c.A2422G	p.T808A	.	.	112	5	239	1	.	91
USH2A	7399	bcgsc.ca	37	1	215853648	215853648	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	USH2A	NM_206933	exon62	c.C12137G	p.A4046G	.	.	106	17	181	10	.	115
USP27X	389856	bcgsc.ca	37	X	49644961	49644961	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	USP27X	NM_001145073	exon1	c.A51G	p.E17E	.	.	64	4	113	0	.	472
UTP3	57050	bcgsc.ca	37	4	71554954	71554954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	UTP3	NM_020368	exon1	c.A560G	p.E187G	.	.	70	6	112	0	.	226
UTP6	55813	bcgsc.ca	37	17	30219784	30219784	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	UTP6	NM_018428	exon5	c.G342A	p.V114V	.	.	98	5	134	0	.	91
WASF3	10810	bcgsc.ca	37	13	27216423	27216423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	WASF3	NM_006646	exon3	c.A16G	p.R6G	.	.	59	5	128	0	.	91
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49939462	49939462	+	Silent	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	WDFY4	NM_020945	exon9	c.G1437T	p.G479G	.	.	41	12	56	0	.	22
WDR17	116966	broad.mit.edu;bcgsc.ca	37	4	177081249	177081249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	WDR17	NM_170710	exon20	c.A2702G	p.Q901R	.	.	136	5	207	0	.	95
WHAMMP3	339005	broad.mit.edu	37	15	23205109	23205109	+	RNA	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	.	.	.	204	4	406	2	.	.
XPO5	57510	bcgsc.ca	37	6	43519067	43519067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	XPO5	NM_020750	exon15	c.A1696G	p.R566G	.	.	187	6	276	3	.	271
XPO6	23214	bcgsc.ca	37	16	28146621	28146621	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	XPO6	NM_015171	exon10	c.G1359A	p.L453L	.	.	100	5	158	0	.	227
XRCC4	7518	bcgsc.ca	37	5	82499451	82499451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	XRCC4	NM_003401	exon5	c.A563G	p.K188R	.	.	93	4	118	0	.	229
YWHAZ	7534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	101960838	101960838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	YWHAZ	NM_145690	exon2	c.T280A	p.C94S	.	.	158	12	286	0	.	658
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154988092	154988092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZBTB7B	NM_001252406	exon4	c.G1058A	p.S353N	.	.	93	16	91	0	.	90
ZDHHC18	84243	bcgsc.ca	37	1	27177082	27177082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZDHHC18	NM_032283	exon5	c.A818G	p.K273R	.	.	59	4	148	0	.	90
ZNF236	7776	bcgsc.ca	37	18	74593343	74593343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF236	NM_007345	exon9	c.T1286C	p.V429A	.	.	125	5	222	0	.	94
ZNF236	7776	ucsc.edu;bcgsc.ca	37	18	74637445	74637445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF236	NM_007345	exon22	c.A3956G	p.Q1319R	.	.	50	5	85	0	.	94
ZNF345	25850	bcgsc.ca	37	19	37367808	37367808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF345	NM_001242476	exon4	c.A76G	p.R26G	.	.	105	5	127	0	.	91
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52538685	52538685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF432	NM_014650	exon5	c.G247A	p.E83K	.	.	163	61	246	0	.	154
ZNF439	90594	bcgsc.ca	37	19	11979116	11979116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF439	NM_152262	exon3	c.A1232G	p.E411G	.	.	81	5	142	0	.	91
ZNF560	147741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9580387	9580387	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF560	NM_152476	exon9	c.449-1G>A	.	.	.	78	9	167	1	.	158
ZNF615	284370	bcgsc.ca	37	19	52496322	52496322	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF615	NM_001199324	exon7	c.A2040G	p.T680T	.	.	309	8	408	0	.	95
ZNF639	51193	bcgsc.ca	37	3	179051545	179051545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF639	NM_016331	exon7	c.T793C	p.C265R	.	.	108	5	182	0	.	90
ZNF729	100287226	bcgsc.ca	37	19	22496476	22496476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF729	NM_001242680	exon4	c.T257C	p.M86T	.	.	96	5	154	0	.	24
ZNF7	7553	bcgsc.ca	37	8	146068470	146068470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF7	NM_003416	exon5	c.A1978G	p.K660E	.	.	75	5	151	0	.	94
ZNF804B	219578	bcgsc.ca	37	7	88964662	88964662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF804B	NM_181646	exon4	c.A2366G	p.E789G	.	.	149	5	220	1	.	101
ZSCAN22	342945	ucsc.edu	37	19	58849647	58849647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZSCAN22	NM_181846	exon3	c.A431G	p.E144G	.	.	44	5	73	0	.	91
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71823203	71823204	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	p.G83V	.	.	.	.	.	.	.	
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247615107	247615108	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	p.H60N	.	.	.	.	.	.	.	
