Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	broad.mit.edu;bcgsc.ca	37	17	67183921	67183921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ABCA10	NM_080282	exon20	c.A2231G	p.K744R	.	.	291	8	99	0	.	93
ABCA1	19	bcgsc.ca	37	9	107582286	107582286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ABCA1	NM_005502	exon21	c.A3025G	p.K1009E	.	.	80	4	44	0	.	1016
ABCA13	154664	bcgsc.ca	37	7	48237923	48237923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ABCA13	NM_152701	exon3	c.T253C	p.F85L	.	.	232	6	60	0	.	521
ABCA7	10347	bcgsc.ca	37	19	1058020	1058020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ABCA7	NM_019112	exon36	c.A4987G	p.S1663G	.	.	202	6	67	0	.	98
ABCB8	11194	bcgsc.ca	37	7	150733680	150733680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ABCB8	NM_007188	exon9	c.G1161T	p.Q387H	.	.	134	6	41	0	.	108
ABCF1	23	bcgsc.ca	37	6	30550226	30550226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ABCF1	NM_001025091	exon9	c.A734G	p.K245R	.	.	245	6	78	0	.	92
ACAT2	39	bcgsc.ca	37	6	160199267	160199267	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACAT2	NM_005891	exon8	c.T978C	p.A326A	.	.	153	5	52	0	.	91
ACO1	48	bcgsc.ca	37	9	32423369	32423369	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACO1	NM_002197	exon9	c.A1023G	p.G341G	.	.	159	5	100	0	.	226
ACOT7	11332	bcgsc.ca	37	1	6324739	6324739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACOT7	NM_181864	exon9	c.A1061G	p.E354G	.	.	94	4	39	0	.	514
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35084616	35084616	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACTC1	NM_005159	exon4	c.C609T	p.V203V	.	.	164	54	66	0	.	92
ACTR10	55860	broad.mit.edu	37	14	58678011	58678011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACTR10	NM_018477	exon5	c.T344C	p.V115A	.	.	773	11	146	0	.	90
ACVR1	90	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158637001	158637001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACVR1	NM_001105	exon4	c.A179G	p.N60S	.	.	163	61	43	0	.	980
ACVRL1	94	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52307800	52307800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ACVRL1	NM_000020	exon5	c.C568T	p.L190F	.	.	171	71	44	0	.	521
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123301311	123301311	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAD1	NM_139243	exon3	c.G87A	p.A29A	.	.	130	87	65	0	.	90
ADAM21	8747	ucsc.edu	37	14	70925818	70925818	+	Silent	SNP	T	T	C	rs59688260	bycluster;byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAM21	NM_003813	exon2	c.T1602C	p.N534N	.	.	110	37	52	0	T|0.233;C|0.767	92
ADAM23	8745	broad.mit.edu;bcgsc.ca	37	2	207345998	207345998	+	Missense_Mutation	SNP	G	G	A	rs146209053	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAM23	NM_003812	exon3	c.G475A	p.G159S	.	.	253	9	111	1	G|0.998;A|0.002	228
ADAM28	10863	bcgsc.ca	37	8	24208743	24208743	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAM28	NM_014265	exon20	c.2100-2A>G	.	.	.	85	4	58	0	.	228
ADAMTS20	80070	bcgsc.ca	37	12	43826603	43826603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAMTS20	NM_025003	exon20	c.T2732C	p.I911T	.	.	146	6	57	0	.	795
ADAT1	23536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	75637056	75637056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADAT1	NM_012091	exon10	c.A1303G	p.K435E	.	.	90	49	55	0	.	92
ADCK1	57143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78353552	78353552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADCK1	NM_020421	exon5	c.A542G	p.K181R	.	.	50	22	23	0	.	334
ADCY10	55811	bcgsc.ca	37	1	167847732	167847732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADCY10	NM_018417	exon12	c.T1358C	p.V453A	.	.	181	6	72	0	.	493
ADGB	79747	bcgsc.ca	37	6	147109712	147109712	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_024694	exon33	c.A4503G	p.E1501E	.	.	56	4	46	1	.	.
ADNP	23394	bcgsc.ca	37	20	49508152	49508152	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ADNP	NM_015339	exon5	c.T3099C	p.Y1033Y	.	.	215	6	68	0	.	92
AGO4	192670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36291032	36291032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_017629	exon4	c.A425G	p.N142S	.	.	264	143	123	0	.	.
AGPAT1	10554	bcgsc.ca	37	6	32137958	32137958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AGPAT1	NM_006411	exon5	c.T590C	p.L197P	.	.	127	5	45	0	.	90
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AHCTF1	NM_015446	exon34	c.6518delA	p.N2173fs	.	.	2629	17	194	1	.	97
AHI1	54806	bcgsc.ca	37	6	135763822	135763822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AHI1	NM_001134832	exon13	c.T1810C	p.S604P	.	.	200	7	74	0	.	227
AKAP11	11215	bcgsc.ca	37	13	42876297	42876297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AKAP11	NM_016248	exon8	c.T3415C	p.S1139P	.	.	144	8	97	0	.	227
AKAP4	8852	bcgsc.ca	37	X	49957654	49957654	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AKAP4	NM_003886	exon5	c.T1710C	p.C570C	.	.	136	6	64	0	.	540
AKD1	221264	bcgsc.ca	37	6	109954247	109954247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AKD1	NM_145025	exon12	c.A1133G	p.N378S	.	.	245	7	78	0	.	91
ALDH1A3	220	bcgsc.ca	37	15	101432799	101432799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALDH1A3	NM_000693	exon4	c.T430C	p.F144L	.	.	236	7	82	0	.	651
ALMS1	7840	broad.mit.edu;bcgsc.ca	37	2	73716774	73716774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALMS1	NM_015120	exon10	c.C7685T	p.P2562L	.	.	145	7	53	0	.	142
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7951723	7951723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ALOX15B	NM_001141	exon14	c.C1871T	p.P624L	.	.	35	20	19	0	.	227
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34005875	34005875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AMACR	NM_014324	exon2	c.A377G	p.Y126C	.	.	61	16	27	0	.	90
AMBP	259	bcgsc.ca	37	9	116823232	116823232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AMBP	NM_001633	exon9	c.A1000G	p.R334G	.	.	76	4	49	0	.	91
AMZ1	155185	bcgsc.ca	37	7	2752488	2752488	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	AMZ1	NM_133463	exon7	c.T1473C	p.R491R	.	.	120	6	37	1	.	90
ANAPC1	64682	hgsc.bcm.edu	37	2	112537964	112537965	+	Splice_Site	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANAPC1	NM_022662	exon45	c.5203-2->T	.	.	.	801	144	151	0	.	228
ANKRD12	23253	bcgsc.ca	37	18	9275529	9275529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD12	NM_015208	exon11	c.T5771C	p.L1924P	.	.	144	5	50	0	.	92
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9256402	9256402	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD12	NM_015208	exon9	c.A3137T	p.K1046I	.	.	239	64	122	0	.	92
ANKRD17	26057	bcgsc.ca	37	4	73957190	73957190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD17	NM_032217	exon29	c.C6155T	p.P2052L	.	.	92	4	56	0	.	234
ANKRD20A5P	440482	ucsc.edu	37	18	14184292	14184292	+	RNA	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD20A5P	.	.	.	.	.	.	20	6	16	2	.	90
ANKRD30B	374860	ucsc.edu	37	18	14851756	14851756	+	Silent	SNP	G	G	A	rs9676225	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ANKRD30B	NM_001145029	exon36	c.G3456A	p.T1152T	.	.	361	114	116	20	G|0.500;A|0.500	24
ANKRD30BP2	149992	ucsc.edu	37	21	14437963	14437963	+	RNA	SNP	T	T	G	rs75453617		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	67	32	34	14	G|1.000;|0.000	.
ANKUB1	389161	bcgsc.ca	37	3	149485670	149485670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001144960	exon5	c.T779C	p.V260A	.	.	161	5	64	0	.	.
APOBEC3F	200316	ucsc.edu	37	22	39441096	39441096	+	Missense_Mutation	SNP	G	G	T	rs77279243		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	APOBEC3F	NM_145298	exon3	c.G322T	p.A108S	.	.	207	73	67	17	T|1.000;|0.000	226
ARAP2	116984	bcgsc.ca	37	4	36230586	36230586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP2	NM_015230	exon2	c.A523G	p.N175D	.	.	106	5	73	0	.	93
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36216083	36216083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP2	NM_015230	exon3	c.A925T	p.N309Y	.	.	397	281	120	0	.	93
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141033643	141033643	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARAP3	NM_022481	exon33	c.G4509T	p.L1503L	.	.	208	86	61	0	.	291
ARFIP1	27236	bcgsc.ca	37	4	153803927	153803927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARFIP1	NM_001025595	exon7	c.A686G	p.E229G	.	.	68	4	60	0	.	91
ARFIP2	23647	bcgsc.ca	37	11	6499115	6499115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARFIP2	NM_001242854	exon7	c.T802C	p.Y268H	.	.	75	4	37	0	.	90
ARHGAP23	57636	broad.mit.edu	37	17	36654048	36654048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARHGAP23	NM_001199417	exon21	c.G3298A	p.E1100K	.	.	577	12	148	1	.	205
ARHGAP31	57514	bcgsc.ca	37	3	119084187	119084187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARHGAP31	NM_020754	exon2	c.C125A	p.A42E	.	.	51	4	27	0	.	92
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	34623647	34623647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARID3C	NM_001017363	exon4	c.C640A	p.Q214K	.	.	32	16	19	0	.	91
ARID4A	5926	hgsc.bcm.edu	37	14	58814451	58814451	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARID4A	NM_002892	exon15	c.1259delA	p.E420fs	.	.	368	9	90	1	.	231
ARID5A	10865	bcgsc.ca	37	2	97215498	97215498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARID5A	NM_212481	exon4	c.T268C	p.W90R	.	.	234	6	58	0	.	226
ARL5C	390790	bcgsc.ca	37	17	37319058	37319058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARL5C	NM_001143968	exon3	c.A161G	p.E54G	.	.	182	6	60	0	.	68
ARNTL	406	bcgsc.ca	37	11	13397225	13397225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ARNTL	NM_001030272	exon14	c.T1238C	p.I413T	.	.	135	5	44	0	.	90
ASB7	140460	bcgsc.ca	37	15	101170003	101170003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ASB7	NM_024708	exon5	c.C573A	p.S191R	.	.	229	6	77	0	.	227
ATF6B	1388	bcgsc.ca	37	6	32084877	32084877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATF6B	NM_004381	exon15	c.A1622G	p.Q541R	.	.	134	6	42	0	.	90
ATF7IP2	80063	broad.mit.edu	37	16	10524585	10524585	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATF7IP2	NM_024997	exon3	c.A108G	p.E36E	.	.	402	9	113	0	.	186
ATF7IP	55729	bcgsc.ca	37	12	14578344	14578344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATF7IP	NM_018179	exon2	c.G1495A	p.E499K	.	.	139	6	47	0	.	252
ATP8B2	57198	bcgsc.ca	37	1	154317551	154317551	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATP8B2	NM_020452	exon22	c.G2490A	p.V830V	.	.	160	5	67	0	.	92
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117228753	117228753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ATRNL1	NM_207303	exon24	c.T3568C	p.S1190P	.	.	84	39	71	0	.	96
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	40757537	40757537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BAHD1	NM_014952	exon6	c.T2056A	p.L686M	.	.	182	69	70	0	.	90
BAI3	577	bcgsc.ca	37	6	70092747	70092747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BAI3	NM_001704	exon31	c.C4300A	p.H1434N	.	.	75	4	52	0	.	1148
BAZ2A	11176	ucsc.edu	37	12	56992654	56992654	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BAZ2A	NM_013449	exon28	c.A5550G	p.G1850G	.	.	26	5	16	1	.	22
BBS9	27241	bcgsc.ca	37	7	33192415	33192415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BBS9	NM_014451	exon3	c.T215C	p.V72A	.	.	124	5	39	0	.	230
BCL2L11	10018	broad.mit.edu	37	2	111881337	111881337	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BCL2L11	NM_138623	exon2	c.T15C	p.P5P	.	.	388	8	99	0	.	1083
BCR	613	broad.mit.edu;bcgsc.ca	37	22	23654007	23654007	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BCR	NM_004327	exon19	c.G3306A	p.K1102K	.	.	326	8	80	0	.	1349
BDH1	622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	197238766	197238766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BDH1	NM_004051	exon7	c.A1032C	p.X344C	.	.	153	51	60	0	.	91
BIN1	274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	127821169	127821169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BIN1	NM_139345	exon9	c.752delA	p.N251fs	.	.	152	52	54	0	.	655
BLID	414899	hgsc.bcm.edu	37	11	121986816	121986817	+	RNA	DEL	CC	CC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	96	0	42	0	.	.
BORA	79866	bcgsc.ca	37	13	73305525	73305525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_024808	exon3	c.G260A	p.R87Q	.	.	76	5	45	0	.	.
BPTF	2186	hgsc.bcm.edu	37	17	65899950	65899951	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BPTF	NM_004459	exon10	c.2967_2968insA	p.V989fs	.	.	951	0	170	0	.	94
BPTF	2186	ucsc.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BPTF	NM_182641	exon24	c.T8028C	p.A2676A	.	.	189	12	44	5	.	94
BRCA2	675	bcgsc.ca	37	13	32906828	32906828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BRCA2	NM_000059	exon10	c.G1213A	p.G405R	.	.	86	5	43	0	.	3153
BSN	8927	bcgsc.ca	37	3	49693115	49693115	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BSN	NM_003458	exon5	c.C6126T	p.V2042V	.	.	154	6	59	0	.	97
BSN	8927	bcgsc.ca	37	3	49694287	49694287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	BSN	NM_003458	exon5	c.A7298G	p.E2433G	.	.	78	4	31	0	.	97
C10orf68	79741	bcgsc.ca	37	10	33018357	33018357	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C10orf68	NM_024688	exon10	c.A798G	p.K266K	.	.	163	5	76	0	.	47
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63585307	63585307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C11orf84	NM_138471	exon2	c.G158C	p.R53T	.	.	87	24	38	0	.	90
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60921835	60921835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C14orf39	NM_174978	exon16	c.G1387C	p.V463L	.	.	252	89	104	0	.	94
C19orf10	56005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4658077	4658077	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C19orf10	NM_019107	exon6	c.A462T	p.A154A	.	.	38	11	23	0	.	90
C1QTNF2	114898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	159776748	159776748	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C1QTNF2	NM_031908	exon3	c.A420G	p.P140P	.	.	37	8	15	0	.	91
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7177505	7177505	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C1S	NM_201442	exon12	c.G1617A	p.V539V	.	.	87	33	35	0	.	91
C2CD3	26005	bcgsc.ca	37	11	73759308	73759308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C2CD3	NM_015531	exon28	c.A5437G	p.T1813A	.	.	172	6	59	0	.	75
C2orf42	54980	bcgsc.ca	37	2	70377628	70377628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C2orf42	NM_017880	exon10	c.C1585A	p.Q529K	.	.	151	5	46	0	.	90
C2orf78	388960	bcgsc.ca	37	2	74043240	74043240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C2orf78	NM_001080474	exon3	c.G1890A	p.M630I	.	.	104	5	48	0	.	24
C4orf21	55345	bcgsc.ca	37	4	113508537	113508537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C4orf21	NM_018392	exon12	c.A3676G	p.K1226E	.	.	153	5	93	0	.	90
C4orf21	55345	bcgsc.ca	37	4	113539686	113539686	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C4orf21	NM_018392	exon6	c.T1512C	p.S504S	.	.	119	5	73	0	.	90
C5orf42	65250	broad.mit.edu	37	5	37125465	37125465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C5orf42	NM_023073	exon46	c.A8677G	p.R2893G	.	.	899	10	149	0	.	94
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128113	88128113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C6orf165	NM_001031743	exon7	c.G819T	p.E273D	.	.	173	71	71	0	.	90
C8orf74	203076	bcgsc.ca	37	8	10557925	10557925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001040032	exon4	c.G829A	p.E277K	.	.	124	7	61	0	.	.
C9orf72	203228	bcgsc.ca	37	9	27561595	27561595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	C9orf72	NM_018325	exon5	c.G653A	p.G218D	.	.	145	5	99	0	.	517
CA2	760	hgsc.bcm.edu	37	8	86386635	86386635	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CA2	NM_000067	exon4	c.434delT	p.I145fs	.	.	1014	13	142	1	.	90
CABYR	26256	bcgsc.ca	37	18	21723326	21723326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CABYR	NM_153769	exon3	c.A148G	p.N50D	.	.	155	6	70	0	.	90
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140901281	140901281	+	Silent	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1B	NM_001243812	exon16	c.C2037G	p.V679V	.	.	210	143	92	0	.	138
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181548355	181548355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1E	NM_001205293	exon5	c.A764T	p.N255I	.	.	545	189	113	0	.	95
CACNA1G	8913	bcgsc.ca	37	17	48696122	48696122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CACNA1G	NM_001256325	exon33	c.T5555C	p.V1852A	.	.	213	6	81	0	.	67
CADPS2	93664	bcgsc.ca	37	7	122130312	122130312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CADPS2	NM_001167940	exon11	c.T1675C	p.F559L	.	.	94	5	47	0	.	94
CARD6	84674	hgsc.bcm.edu	37	5	40853094	40853094	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CARD6	NM_032587	exon3	c.1660delT	p.F554fs	.	.	1198	19	170	1	.	230
CBL	867	ucsc.edu	37	11	119156275	119156275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CBL	NM_005188	exon11	c.T1940C	p.M647T	.	.	47	4	17	0	.	4020
CCDC144B	284047	hgsc.bcm.edu	37	17	18498497	18498498	+	RNA	INS	-	-	AA	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CCDC144B	.	.	.	.	.	.	1516	0	192	0	.	70
CCDC171	203238	bcgsc.ca	37	9	15666163	15666163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_173550	exon9	c.A918T	p.L306F	.	.	69	4	35	0	.	.
CCDC22	28952	bcgsc.ca	37	X	49105713	49105713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CCDC22	NM_014008	exon14	c.T1625C	p.L542P	.	.	72	4	34	0	.	130
CCDC88C	440193	broad.mit.edu	37	14	91808796	91808796	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CCDC88C	NM_001080414	exon6	c.A411G	p.K137K	.	.	523	7	129	1	.	25
CCNB1IP1	57820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	20779825	20779826	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CCNB1IP1	NM_021178	exon7	c.718_719insT	p.A240fs	.	.	291	83	90	0	.	659
CCT6P1	643253	broad.mit.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	69	6	40	0	.	.
CCT6P1	643253	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	452	7	120	0	.	.
CD163L1	283316	broad.mit.edu	37	12	7527456	7527456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CD163L1	NM_174941	exon12	c.T3065C	p.V1022A	.	.	190	5	45	1	.	100
CD2AP	23607	ucsc.edu	37	6	47501336	47501336	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CD2AP	NM_012120	exon3	c.166-2A>G	.	.	.	47	4	18	0	.	92
CD3EAP	10849	bcgsc.ca	37	19	45911496	45911496	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CD3EAP	NM_012099	exon3	c.A270G	p.G90G	.	.	81	4	31	0	.	156
CDC14C	168448	ucsc.edu	37	7	48965427	48965427	+	RNA	SNP	A	A	G	rs388312	bycluster;byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	176	50	48	12	A|0.290;G|0.710	.
CDC27	996	bcgsc.ca	37	17	45214519	45214519	+	Missense_Mutation	SNP	A	A	G	rs74348171		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDC27	NM_001114091	exon14	c.T1930C	p.W644R	.	.	66	15	25	1	A|0.500;G|0.500	291
CDC27	996	bcgsc.ca	37	17	45234461	45234461	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDC27	NM_001114091	exon7	c.C660A	p.S220S	.	.	106	14	36	0	.	291
CDC27	996	bcgsc.ca	37	17	45234484	45234484	+	Missense_Mutation	SNP	T	T	C	rs202100614		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDC27	NM_001114091	exon7	c.A637G	p.N213D	.	.	82	9	29	0	.	291
CDC27	996	bcgsc.ca	37	17	45234626	45234626	+	Silent	SNP	T	T	G	rs76359747	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDC27	NM_001114091	exon6	c.A600C	p.T200T	.	.	399	72	98	5	T|0.500;G|0.500	291
CDC27	996	broad.mit.edu;bcgsc.ca	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDC27	NM_001114091	exon6	c.G601A	p.V201I	.	.	396	10	97	0	.	291
CDC45	8318	bcgsc.ca	37	22	19471527	19471527	+	Missense_Mutation	SNP	A	A	G	rs112518152		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDC45	NM_003504	exon5	c.A485G	p.E162G	.	.	150	5	56	0	A|0.500;G|0.500	227
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63430104	63430104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDH7	NM_004361	exon2	c.G26T	p.C9F	.	.	94	31	54	0	.	94
CDHR5	53841	hgsc.bcm.edu	37	11	618896	618896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDHR5	NM_021924	exon13	c.G1663A	p.V555M	.	.	357	18	87	0	.	90
CDHR5	53841	ucsc.edu;bcgsc.ca	37	11	618860	618860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDHR5	NM_021924	exon13	c.A1699G	p.S567G	.	.	389	50	84	0	.	90
CDK12	51755	bcgsc.ca	37	17	37627541	37627541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDK12	NM_016507	exon2	c.A1456G	p.N486D	.	.	122	5	47	0	.	1055
CDK8	1024	bcgsc.ca	37	13	26956988	26956988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CDK8,NS,carcinoma,+1	CDK8	NM_001260	exon5	c.A494G	p.E165G	.	.	77	4	46	0	.	1023
CDT1	81620	bcgsc.ca	37	16	88871240	88871240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CDT1	NM_030928	exon3	c.A422G	p.K141R	.	.	91	4	43	0	.	227
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109795619	109795619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CELSR2	NM_001408	exon1	c.T2918C	p.I973T	.	.	95	42	37	0	.	526
CEP104	9731	bcgsc.ca	37	1	3755581	3755581	+	Missense_Mutation	SNP	G	G	T	rs139901107	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CEP104,abdomen,malignant_melanoma,0	CEP104	NM_014704	exon8	c.C838A	p.R280S	.	.	135	6	75	0	.	92
CEP290	80184	hgsc.bcm.edu;broad.mit.edu	37	12	88449444	88449444	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CEP290	NM_025114	exon50	c.6869delA	p.N2290fs	.	.	496	11	146	0	.	96
CERS3	204219	bcgsc.ca	37	15	101019681	101019681	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_178842	exon8	c.A468G	p.K156K	.	.	70	4	40	0	.	.
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151499552	151499552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CGN	NM_020770	exon10	c.G1865T	p.G622V	.	.	228	79	83	0	.	93
CHD2	1106	bcgsc.ca	37	15	93555660	93555660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CHD2	NM_001271	exon36	c.T4678C	p.S1560P	.	.	118	5	51	0	.	229
CHD3	1107	bcgsc.ca	37	17	7804629	7804629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CHD3	NM_001005271	exon20	c.T3365C	p.M1122T	.	.	77	4	42	0	.	228
CHFR	55743	bcgsc.ca	37	12	133448970	133448970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CHFR	NM_001161347	exon4	c.A244G	p.T82A	.	.	187	6	52	0	.	227
CHM	1121	bcgsc.ca	37	X	85119813	85119813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CHM	NM_000390	exon15	c.T1784C	p.F595S	.	.	86	5	30	0	.	131
CHRM2	1129	bcgsc.ca	37	7	136700944	136700944	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CHRM2	NM_001006632	exon3	c.T1332C	p.N444N	.	.	90	4	100	0	.	94
CHRNA9	55584	bcgsc.ca	37	4	40356077	40356077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CHRNA9	NM_017581	exon5	c.G980A	p.G327E	.	.	95	5	35	0	.	96
CIDEB	27141	bcgsc.ca	37	14	24775190	24775190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CIDEB	NM_014430	exon6	c.T490C	p.C164R	.	.	134	5	41	1	.	90
CIZ1	25792	bcgsc.ca	37	9	130941326	130941326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CIZ1	NM_001257975	exon8	c.G1250C	p.G417A	.	.	183	25	68	0	.	92
CIZ1	25792	bcgsc.ca	37	9	130941349	130941349	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CIZ1	NM_001257975	exon8	c.A1227G	p.V409V	.	.	188	24	62	0	.	92
CIZ1	25792	bcgsc.ca	37	9	130947934	130947934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CIZ1	NM_001257975	exon5	c.G570A	p.L190L	.	.	65	4	35	0	.	92
CLCA1	1179	bcgsc.ca	37	1	86965342	86965342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CLCA1	NM_001285	exon14	c.A2359G	p.K787E	.	.	65	4	37	0	.	91
CLEC18C	283971	bcgsc.ca	37	16	70219820	70219820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CLEC18C	NM_173619	exon11	c.C1244T	p.A415V	.	.	74	6	82	0	.	22
CLIC3	9022	bcgsc.ca	37	9	139890170	139890170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CLIC3	NM_004669	exon2	c.T73C	p.C25R	.	.	63	4	35	0	.	90
CMYA5	202333	bcgsc.ca	37	5	79029257	79029257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CMYA5	NM_153610	exon2	c.A4669G	p.I1557V	.	.	73	4	45	0	.	77
CMYA5	202333	bcgsc.ca	37	5	79034149	79034149	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CMYA5	NM_153610	exon2	c.T9561C	p.P3187P	.	.	66	4	42	0	.	77
CMYA5	202333	bcgsc.ca	37	5	79095405	79095405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CMYA5	NM_153610	exon13	c.G12176A	p.G4059E	.	.	162	6	62	0	.	77
CNGB3	54714	bcgsc.ca	37	8	87656035	87656035	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CNGB3	NM_019098	exon10	c.T1122C	p.A374A	.	.	127	5	87	0	.	93
CNOT6L	246175	broad.mit.edu	37	4	78641756	78641756	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CNOT6L	NM_144571	exon12	c.C1497T	p.N499N	.	.	247	11	122	0	.	67
CNTLN	54875	bcgsc.ca	37	9	17394920	17394920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CNTLN	NM_017738	exon15	c.C2468A	p.T823K	.	.	76	4	59	0	.	91
CNTN5	53942	bcgsc.ca	37	11	100221506	100221506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CNTN5	NM_001243270	exon23	c.T3104C	p.L1035P	.	.	77	4	51	0	.	366
CNTRL	11064	bcgsc.ca	37	9	123902959	123902959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CNTRL	NM_007018	exon15	c.A2378G	p.Q793R	.	.	88	4	50	0	.	661
COG3	83548	bcgsc.ca	37	13	46104882	46104882	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COG3	NM_031431	exon22	c.C2424T	p.D808D	.	.	80	5	36	0	.	154
COL11A1	1301	bcgsc.ca	37	1	103463881	103463881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL11A1	NM_080629	exon25	c.T2217C	p.G739G	.	.	247	7	107	0	.	586
COL11A1	1301	bcgsc.ca	37	1	103496775	103496775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL11A1	NM_001854	exon5	c.C677A	p.T226K	.	.	61	5	38	0	.	586
COL16A1	1307	bcgsc.ca	37	1	32127961	32127961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL16A1	NM_001856	exon58	c.G3655A	p.G1219R	.	.	72	5	37	0	.	98
COL17A1	1308	bcgsc.ca	37	10	105793120	105793120	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL17A1	NM_000494	exon53	c.G4170A	p.L1390L	.	.	56	4	28	0	.	95
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu	37	10	105819448	105819448	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL17A1	NM_000494	exon15	c.1170delA	p.K390fs	.	.	861	17	155	0	.	95
COL27A1	85301	bcgsc.ca	37	9	117027359	117027359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL27A1	NM_032888	exon31	c.A3308G	p.E1103G	.	.	200	24	80	11	.	94
COL6A3	1293	bcgsc.ca	37	2	238268018	238268018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL6A3	NM_004369	exon18	c.T6296C	p.F2099S	.	.	170	5	55	0	.	526
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130286897	130286897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	COL6A6	NM_001102608	exon5	c.A1850G	p.K617R	.	.	121	45	50	0	.	76
CPS1	1373	bcgsc.ca	37	2	211457627	211457627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CPS1	NM_001122633	exon12	c.T1129C	p.F377L	.	.	51	4	46	0	.	162
CR1	1378	broad.mit.edu	37	1	207739214	207739214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CR1	NM_000651	exon24	c.T3898A	p.C1300S	.	.	1291	13	180	0	.	93
CRIPAK	285464	bcgsc.ca	37	4	1388662	1388662	+	Silent	SNP	G	G	C	rs9762106	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CRIPAK	NM_175918	exon1	c.G363C	p.P121P	.	.	180	17	44	0	G|0.993;C|0.007	90
CRIPAK	285464	bcgsc.ca	37	4	1388666	1388666	+	Missense_Mutation	SNP	C	C	T	rs9760377	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CRIPAK	NM_175918	exon1	c.C367T	p.R123W	.	.	168	29	42	1	C|0.999;T|0.001	90
CRIPAK	285464	bcgsc.ca	37	4	1389007	1389007	+	Silent	SNP	C	C	T	rs78871723	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CRIPAK	NM_175918	exon1	c.C708T	p.C236C	.	.	134	16	53	0	C|0.902;T|0.098	90
CRIPAK	285464	broad.mit.edu	37	4	1388398	1388398	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CRIPAK	NM_175918	exon1	c.G99A	p.P33P	.	.	250	9	79	1	.	90
CROCC	9696	bcgsc.ca	37	1	17263137	17263137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CROCC	NM_014675	exon9	c.T962C	p.L321P	.	.	86	4	57	0	.	137
CSF2	1437	ucsc.edu	37	5	131411498	131411498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CSF2	NM_000758	exon4	c.T388C	p.F130L	.	.	43	4	15	0	.	90
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113988234	113988234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CSMD3,NS,carcinoma,0	CSMD3	NM_198123	exon7	c.G1174A	p.E392K	.	.	404	85	101	0	.	1132
CSN3	1448	bcgsc.ca	37	4	71114862	71114862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CSN3	NM_005212	exon4	c.A235G	p.T79A	.	.	67	4	46	0	.	93
CTNNA3	29119	bcgsc.ca	37	10	67862966	67862966	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CTNNA3	NM_001127384	exon14	c.A1926G	p.E642E	.	.	381	8	115	0	.	234
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	.	.	223	71	91	1	.	24361
CTSA	5476	bcgsc.ca	37	20	44520591	44520591	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CTSA	NM_000308	exon3	c.T285C	p.P95P	.	.	106	6	40	0	.	91
CUX1	1523	bcgsc.ca	37	7	101740642	101740642	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CUX1	NM_001202544	exon4	c.254-2A>G	.	.	.	90	5	33	0	.	160
CXCL12	6387	bcgsc.ca	37	10	44868790	44868790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CXCL12	NM_000609	exon4	c.A268G	p.R90G	.	.	160	6	48	0	.	226
CYP1A1	1543	bcgsc.ca	37	15	75013568	75013568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CYP1A1	NM_000499	exon5	c.T1138C	p.S380P	.	.	122	7	34	0	.	156
CYTL1	54360	broad.mit.edu;bcgsc.ca	37	4	5016953	5016953	+	Silent	SNP	T	T	C	rs201652130		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	CYTL1	NM_018659	exon4	c.A336G	p.V112V	.	.	206	7	79	0	T|1.000;C|0.000	91
DAPK1	1612	bcgsc.ca	37	9	90262312	90262312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DAPK1	NM_004938	exon14	c.A1323G	p.K441K	.	.	71	4	44	0	.	359
DARC	2532	bcgsc.ca	37	1	159175994	159175994	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DARC	NM_001122951	exon1	c.T771C	p.P257P	.	.	171	6	59	0	.	659
DBF4B	80174	broad.mit.edu	37	17	42828573	42828573	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DBF4B	NM_145663	exon14	c.T1800C	p.T600T	.	.	105	8	23	0	.	227
DCHS2	54798	bcgsc.ca	37	4	155254097	155254097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DCHS2	NM_001142552	exon5	c.T3263C	p.V1088A	.	.	63	4	43	0	.	94
DCST2	127579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155003099	155003099	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DCST2	NM_144622	exon6	c.G828T	p.R276R	.	.	253	94	67	0	.	92
DDX11	1663	broad.mit.edu	37	12	31242081	31242081	+	Missense_Mutation	SNP	G	G	A	rs201968272		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DDX11	NM_030653	exon7	c.G788A	p.R263Q	.	.	536	47	126	2	G|0.994;A|0.006	229
DDX31	64794	bcgsc.ca	37	9	135487493	135487493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DDX31	NM_022779	exon19	c.A2290G	p.R764G	.	.	108	5	61	0	.	226
DDX3Y	8653	bcgsc.ca	37	Y	15027613	15027613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DDX3Y	NM_004660	exon11	c.A1091G	p.E364G	.	.	76	4	83	0	.	136
DDX50	79009	ucsc.edu	37	10	70706219	70706219	+	Missense_Mutation	SNP	T	T	G	rs200887084		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DDX50	NM_024045	exon15	c.T2047G	p.S683A	.	.	105	39	36	3	T|0.999;G|0.001	91
DENND2A	27147	bcgsc.ca	37	7	140255446	140255446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DENND2A	NM_015689	exon10	c.T2027C	p.L676P	.	.	145	5	47	0	.	138
DENND4C	55667	broad.mit.edu;bcgsc.ca	37	9	19332050	19332050	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DENND4C	NM_017925	exon17	c.T2328C	p.S776S	.	.	488	11	150	1	.	92
DHX37	57647	bcgsc.ca	37	12	125457071	125457071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DHX37	NM_032656	exon7	c.T1055C	p.V352A	.	.	262	7	78	0	.	227
DHX9	1660	bcgsc.ca	37	1	182850728	182850728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DHX9	NM_001357	exon24	c.T2860C	p.W954R	.	.	194	7	77	0	.	92
DLG2	1740	bcgsc.ca	37	11	83770483	83770483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DLG2	NM_001142699	exon11	c.A794G	p.E265G	.	.	146	6	40	0	.	96
DMBT1	1755	broad.mit.edu	37	10	124336117	124336117	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DMBT1	NM_007329	exon7	c.A486G	p.G162G	.	.	175	7	50	0	.	494
DNAH1	25981	bcgsc.ca	37	3	52432095	52432095	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAH1	NM_015512	exon75	c.T12006C	p.P4002P	.	.	145	5	49	0	.	67
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13770967	13770967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAH5	NM_001369	exon56	c.A9496G	p.R3166G	.	.	272	77	66	0	.	182
DNAJA4	55466	bcgsc.ca	37	15	78557173	78557173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAJA4	NM_018602	exon2	c.A155G	p.K52R	.	.	133	6	40	0	.	226
DNAJC10	54431	broad.mit.edu	37	2	183623572	183623572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAJC10	NM_018981	exon20	c.A1952G	p.N651S	.	.	436	9	140	0	.	273
DNAJC1	64215	bcgsc.ca	37	10	22193456	22193456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAJC1	NM_022365	exon7	c.T815C	p.L272P	.	.	487	10	128	0	.	226
DNAJC9	23234	hgsc.bcm.edu	37	10	75006451	75006452	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DNAJC9	NM_015190	exon2	c.316_317insT	p.K106_K107delinsX	.	.	114	12	46	0	.	226
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169141427	169141427	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DOCK2	NM_004946	exon19	c.A1907T	p.K636M	.	.	385	103	100	0	.	97
DOCK9	23348	bcgsc.ca	37	13	99630087	99630087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DOCK9	NM_001130050	exon1	c.A77G	p.K26R	.	.	88	4	50	0	.	90
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7585392	7585392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSP	NM_004415	exon24	c.A7897G	p.I2633V	.	.	88	28	34	0	.	518
DSPP	1834	bcgsc.ca	37	4	88536609	88536609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.A2795G	p.N932S	.	.	309	35	128	0	.	90
DSPP	1834	bcgsc.ca	37	4	88536614	88536614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.A2800G	p.N934D	.	.	312	35	132	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537232	88537232	+	Missense_Mutation	SNP	A	A	G	rs140656082		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.A3418G	p.N1140D	.	.	114	64	73	2	.	90
DSPP	1834	bcgsc.ca	37	4	88537243	88537243	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.C3429T	p.D1143D	.	.	119	17	71	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537261	88537261	+	Missense_Mutation	SNP	A	A	T	rs200612038		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.A3447T	p.E1149D	.	.	122	18	70	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.C3456T	p.D1152D	.	.	124	10	67	0	.	90
DSPP	1834	bcgsc.ca	37	4	88537276	88537276	+	Silent	SNP	T	T	C	rs147477032		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.T3462C	p.S1154S	.	.	115	41	66	6	.	90
DSPP	1834	bcgsc.ca	37	4	88537279	88537279	+	Silent	SNP	C	C	T	rs142684629		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.C3465T	p.D1155D	.	.	114	35	67	2	.	90
DSPP	1834	bcgsc.ca	37	4	88537303	88537303	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DSPP	NM_014208	exon5	c.C3489T	p.S1163S	.	.	143	40	67	4	.	90
DTX3L	151636	broad.mit.edu;bcgsc.ca	37	3	122287562	122287562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	DTX3L,NS,carcinoma,-1	DTX3L	NM_138287	exon3	c.A626G	p.K209R	.	.	128	7	53	0	.	587
DYDC1	143241	bcgsc.ca	37	10	82098256	82098256	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	DYDC1	NM_001269053	exon6	c.A471G	p.R157R	.	.	206	6	90	0	.	68
ECI2	10455	bcgsc.ca	37	6	4117647	4117647	+	Silent	SNP	C	C	T	rs12557	bycluster;byfrequency;by1000genomes	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ECI2	NM_206836	exon9	c.G924A	p.A308A	.	.	261	7	82	0	C|0.985;T|0.015	90
EFTUD1	79631	broad.mit.edu	37	15	82444393	82444393	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EFTUD1	NM_024580	exon18	c.G2402A	p.W801X	.	.	658	9	157	1	.	91
EIF4ENIF1	56478	bcgsc.ca	37	22	31840644	31840644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EIF4ENIF1	NM_019843	exon15	c.T2021C	p.V674A	.	.	168	5	50	0	.	91
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184049265	184049265	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EIF4G1	NM_001194946	exon31	c.G4287A	p.V1429V	.	.	68	28	28	0	.	344
EML2	24139	bcgsc.ca	37	19	46133233	46133233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EML2	NM_001193268	exon10	c.G1185T	p.K395N	.	.	170	6	48	0	.	154
EP400	57634	bcgsc.ca	37	12	132445326	132445326	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EP400	NM_015409	exon2	c.C162A	p.P54P	.	.	128	5	43	0	.	520
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5433469	5433469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPB41L3	NM_012307	exon8	c.A911T	p.K304M	.	.	85	27	42	0	.	95
EPHA5	2044	bcgsc.ca	37	4	66230799	66230799	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPHA5	NM_004439	exon12	c.A2172G	p.E724E	.	.	199	7	138	0	.	1430
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144945358	144945358	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	EPPK1	NM_031308	exon1	c.C2064A	p.V688V	.	.	209	40	37	0	.	25
ERC1	23085	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1517402	1517402	+	Missense_Mutation	SNP	T	T	A	rs140227397	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ERC1	NM_178040	exon17	c.T3013A	p.S1005T	.	.	63	18	17	0	T|1.000;C|0.000	660
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60217888	60217888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ERCC8	NM_000082	exon3	c.A268G	p.I90V	.	.	59	24	36	0	.	227
FAM108B1	51104	bcgsc.ca	37	9	74489940	74489940	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM108B1	NM_016014	exon2	c.A57G	p.P19P	.	.	67	4	30	0	.	90
FAM120C	54954	bcgsc.ca	37	X	54143078	54143078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM120C	NM_017848	exon10	c.A2212G	p.R738G	.	.	86	4	36	0	.	131
FAM166A	401565	bcgsc.ca	37	9	140142110	140142110	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM166A	NM_001001710	exon2	c.56+2T>C	.	.	.	76	4	47	0	.	91
FAM186A	121006	bcgsc.ca	37	12	50745749	50745749	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM186A	NM_001145475	exon4	c.T4866C	p.A1622A	.	.	157	16	51	0	.	68
FAM200B	285550	bcgsc.ca	37	4	15688924	15688924	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001145191	exon2	c.A324G	p.E108E	.	.	143	5	68	0	.	.
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	A	G	rs145580328	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM47C	NM_001013736	exon1	c.A1942G	p.N648D	.	.	152	8	64	0	A|1.000;G|0.000	111
FAM60A	58516	hgsc.bcm.edu	37	12	31448177	31448178	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM60A	NM_021238	exon4	c.219_220insA	p.N73fs	.	.	928	0	163	0	.	90
FAM74A3	728495	hgsc.bcm.edu	37	9	40715911	40715944	+	RNA	DEL	GAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCA	GAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	GAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCA	GAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM74A3	.	.	.	.	.	.	339	0	58	0	.	23
FAM78A	286336	bcgsc.ca	37	9	134136456	134136456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM78A	NM_033387	exon2	c.A605G	p.D202G	.	.	145	6	60	0	.	91
FAM86C2P	645332	broad.mit.edu	37	11	67560644	67560644	+	RNA	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	304	8	70	0	.	.
FAM90A1	55138	ucsc.edu	37	12	8375052	8375052	+	Missense_Mutation	SNP	A	A	G	rs17857269	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FAM90A1	NM_018088	exon7	c.T761C	p.V254A	.	.	118	17	34	5	A|0.849;G|0.151	91
FANCD2	2177	hgsc.bcm.edu	37	3	10088408	10088444	+	Splice_Site	DEL	GTAAGTGTCAGAGACTATTGATTTTTAATCTAAAACA	GTAAGTGTCAGAGACTATTGATTTTTAATCTAAAACA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	GTAAGTGTCAGAGACTATTGATTTTTAATCTAAAACA	GTAAGTGTCAGAGACTATTGATTTTTAATCTAAAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FANCD2	.	.	.	.	.	.	811	0	127	0	.	229
FBN1	2200	bcgsc.ca	37	15	48707865	48707865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FBN1	NM_000138	exon64	c.A7919G	p.E2640G	.	.	194	7	55	0	.	92
FBXO34	55030	broad.mit.edu;bcgsc.ca	37	14	55818182	55818182	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FBXO34	NM_017943	exon2	c.T1074C	p.C358C	.	.	277	7	84	0	.	228
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40424311	40424311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FCGBP	NM_003890	exon4	c.C1892G	p.P631R	.	.	104	40	44	0	.	98
FCGBP	8857	ucsc.edu	37	19	40408268	40408268	+	Missense_Mutation	SNP	G	G	T	rs34938990	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FCGBP	NM_003890	exon8	c.C4571A	p.T1524N	.	.	217	36	77	0	G|0.782;T|0.218	98
FHAD1	114827	bcgsc.ca	37	1	15635132	15635132	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FHAD1	NM_052929	exon7	c.C939T	p.Y313Y	.	.	122	5	69	0	.	69
FLT3	2322	bcgsc.ca	37	13	28631596	28631596	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FLT3	NM_004119	exon4	c.A372G	p.G124G	.	.	62	4	38	0	.	42117
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180047636	180047636	+	Silent	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FLT4	NM_182925	exon16	c.C2379G	p.L793L	.	.	172	64	47	0	.	1490
FMN2	56776	bcgsc.ca	37	1	240341244	240341244	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FMN2	NM_020066	exon3	c.T1806C	p.A602A	.	.	124	5	51	0	.	145
FMO1	2326	broad.mit.edu;mdanderson.org	37	1	171251160	171251160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FMO1	NM_002021	exon7	c.C871T	p.R291C	.	.	37	7	39	0	.	515
FOXM1	2305	bcgsc.ca	37	12	2977916	2977916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FOXM1	NM_202003	exon4	c.A659G	p.E220G	.	.	161	6	52	0	.	227
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26851109	26851109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FOXN1	NM_003593	exon1	c.G122T	p.S41I	.	.	78	34	37	0	.	226
FOXP4	116113	hgsc.bcm.edu	37	6	41533560	41533561	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FOXP4	NM_001012427	exon2	c.62_63insC	p.G21fs	.	.	179	12	46	0	.	289
FRAS1	80144	bcgsc.ca	37	4	79372937	79372937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRAS1	NM_025074	exon46	c.T6475C	p.Y2159H	.	.	73	4	44	0	.	68
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39265478	39265478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FREM2	NM_207361	exon1	c.G3997C	p.D1333H	.	.	73	42	64	0	.	100
FRG1	2483	bcgsc.ca	37	4	190876269	190876269	+	Missense_Mutation	SNP	T	T	C	rs149113074	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1	NM_004477	exon5	c.T395C	p.I132T	.	.	986	50	161	2	T|0.999;C|0.001	90
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1	NM_004477	exon6	c.G506A	p.S169N	.	.	1445	60	190	5	G|0.500;A|0.500	90
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	RNA	SNP	G	G	C	rs200164543		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	2448	95	144	1	.	22
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	1278	46	187	4	.	22
FRG1B	284802	bcgsc.ca	37	20	29623231	29623231	+	RNA	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	1174	33	177	3	.	22
FRG1B	284802	bcgsc.ca	37	20	29625875	29625875	+	RNA	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	401	15	125	2	.	22
FRG1B	284802	bcgsc.ca;mdanderson.org	37	20	29628233	29628233	+	RNA	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	3832	127	199	1	.	22
FRG1B	284802	hgsc.bcm.edu	37	20	29625928	29625950	+	RNA	DEL	GTTGGGCATTCAGATGCAATTGG	GTTGGGCATTCAGATGCAATTGG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	GTTGGGCATTCAGATGCAATTGG	GTTGGGCATTCAGATGCAATTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	382	0	93	0	.	22
FRG1B	284802	ucsc.edu	37	20	29625935	29625935	+	RNA	SNP	A	A	G	rs62198354	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRG1B	.	.	.	.	.	.	384	194	87	1	A|0.417;G|0.583	22
FRYL	285527	broad.mit.edu;bcgsc.ca	37	4	48537758	48537758	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FRYL	NM_015030	exon48	c.T6480C	p.C2160C	.	.	401	9	138	0	.	69
FSIP2	401024	bcgsc.ca	37	2	186672208	186672208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FSIP2	NM_173651	exon17	c.A18442G	p.I6148V	.	.	72	4	53	0	.	90
FTSJ1	24140	bcgsc.ca	37	X	48341400	48341400	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FTSJ1	NM_012280	exon12	c.A984G	p.S328S	.	.	169	5	50	0	.	130
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3527733	3527733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	FZR1	NM_001136198	exon6	c.T575G	p.L192R	.	.	160	47	50	0	.	227
GALNT14	79623	bcgsc.ca	37	2	31152332	31152332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GALNT14	NM_001253826	exon12	c.A1095G	p.E365E	.	.	173	7	63	0	.	93
GALNT15	117248	bcgsc.ca	37	3	16250105	16250105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_054110	exon4	c.A1007G	p.K336R	.	.	139	5	42	0	.	.
GATSL3	652968	bcgsc.ca	37	22	30681819	30681819	+	Splice_Site	SNP	A	A	C	rs115548734		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GATSL3	NM_001037666	exon9	c.921+2T>G	.	.	.	161	9	42	1	.	135
GBP4	115361	ucsc.edu	37	1	89652078	89652078	+	Missense_Mutation	SNP	A	A	T	rs608339	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GBP4	NM_052941	exon10	c.T1645A	p.L549M	.	.	714	168	146	6	A|0.658;T|0.342	90
GBP4	115361	ucsc.edu	37	1	89652094	89652094	+	Silent	SNP	G	G	A	rs1142887	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GBP4	NM_052941	exon10	c.C1629T	p.A543A	.	.	753	151	149	0	G|0.527;A|0.473	90
GCM2	9247	bcgsc.ca	37	6	10874521	10874521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GCM2	NM_004752	exon5	c.A1228G	p.S410G	.	.	179	7	79	0	.	92
GCNT2	2651	bcgsc.ca	37	6	10621623	10621623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GCNT2	NM_145649	exon4	c.A965G	p.N322S	.	.	175	5	57	0	.	92
GGT5	2687	ucsc.edu	37	22	24622155	24622155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GGT5	NM_001099781	exon8	c.T1118C	p.L373P	.	.	92	19	23	2	.	71
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110385195	110385195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GIT2	NM_001135214	exon15	c.A1507G	p.R503G	.	.	282	98	88	0	.	226
GLIS3	169792	bcgsc.ca	37	9	3898743	3898743	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GLIS3	NM_001042413	exon7	c.T2076C	p.A692A	.	.	77	4	37	0	.	91
GLTSCR2	29997	hgsc.bcm.edu	37	19	48248964	48248965	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GLTSCR2	NM_015710	exon1	c.148_149insG	p.R50fs	.	.	106	10	22	0	.	514
GNAL	2774	bcgsc.ca	37	18	11868605	11868605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GNAL	NM_182978	exon9	c.A974G	p.N325S	.	.	140	5	39	0	.	228
GPM6A	2823	bcgsc.ca	37	4	176622783	176622783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPM6A	NM_201591	exon2	c.T173C	p.L58P	.	.	196	6	92	0	.	90
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46976681	46976681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR110	NM_153840	exon11	c.G2490C	p.Q830H	.	.	171	60	81	0	.	71
GPR112	139378	bcgsc.ca	37	X	135429104	135429104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR112	NM_153834	exon6	c.C3239T	p.T1080I	.	.	50	4	69	0	.	183
GPR1	2825	bcgsc.ca	37	2	207041271	207041271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR1	NM_001098199	exon3	c.A701G	p.K234R	.	.	82	4	32	0	.	90
GPR156	165829	bcgsc.ca	37	3	119886918	119886918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR156	NM_153002	exon9	c.A1406G	p.K469R	.	.	156	5	55	0	.	92
GPR18	2841	bcgsc.ca	37	13	99907824	99907824	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR18	NM_001098200	exon2	c.A303G	p.T101T	.	.	99	6	70	0	.	90
GPR98	84059	bcgsc.ca	37	5	89999480	89999480	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GPR98	NM_032119	exon35	c.8156-2A>G	.	.	.	176	7	65	0	.	103
GRHL2	79977	bcgsc.ca	37	8	102631843	102631843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GRHL2	NM_024915	exon9	c.A1175G	p.Q392R	.	.	178	7	37	0	.	93
GRID1	2894	bcgsc.ca	37	10	87487678	87487678	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GRID1	NM_017551	exon10	c.T1467C	p.D489D	.	.	186	6	69	0	.	142
GRID2	2895	bcgsc.ca	37	4	94436485	94436485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GRID2	NM_001510	exon13	c.T2116C	p.S706P	.	.	73	4	49	0	.	159
GRIK2	2898	bcgsc.ca	37	6	102513771	102513771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GRIK2	NM_001166247	exon16	c.T2662C	p.L888L	.	.	57	4	72	0	.	157
GXYLT1	283464	hgsc.bcm.edu	37	12	42512967	42512967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	GXYLT1	NM_173601	exon3	c.T321A	p.S107R	.	.	300	21	80	0	.	22
HACL1	26061	bcgsc.ca	37	3	15621495	15621495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HACL1	NM_012260	exon9	c.T725C	p.L242P	.	.	124	5	39	0	.	90
HCAR2	338442	hgsc.bcm.edu	37	12	123186741	123186745	+	Frame_Shift_Del	DEL	AAGGA	AAGGA	-	rs63475561		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AAGGA	AAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HCAR2	NM_177551	exon1	c.1086_1090del	p.362_364del	.	.	618	2	155	0	.	91
HCN2	610	ucsc.edu	37	19	603634	603634	+	Silent	SNP	T	T	C	rs56131056	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HCN2	NM_001194	exon2	c.T723C	p.T241T	.	.	97	21	36	3	T|0.856;C|0.144	90
HDAC5	10014	bcgsc.ca	37	17	42155752	42155752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HDAC5	NM_001015053	exon27	c.G3364A	p.A1122T	.	.	139	6	30	0	.	227
HDHD1	8226	broad.mit.edu;bcgsc.ca	37	X	7035008	7035008	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HDHD1	NM_001135565	exon2	c.G129A	p.T43T	.	.	105	5	31	0	.	130
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197084796	197084796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HECW2	NM_020760	exon26	c.A4375G	p.S1459G	.	.	120	38	56	0	.	668
HERC2P9	440248	broad.mit.edu;ucsc.edu	37	15	28900722	28900722	+	RNA	SNP	T	T	C	rs12593502	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	54	18	27	1	T|0.801;C|0.199	.
HERC2P9	440248	ucsc.edu	37	15	28900710	28900710	+	RNA	SNP	T	T	C	rs12593498	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	53	18	24	1	T|0.763;C|0.237	.
HESX1	8820	hgsc.bcm.edu	37	3	57232250	57232250	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HESX1	NM_003865	exon4	c.533delA	p.N178fs	.	.	1072	13	175	3	.	227
HGSNAT	138050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	43033222	43033222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HGSNAT	NM_152419	exon10	c.T857A	p.V286E	.	.	197	110	114	0	.	68
HHIP	64399	bcgsc.ca	37	4	145627695	145627695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HHIP	NM_022475	exon5	c.A844G	p.R282G	.	.	135	5	73	0	.	283
HIP1	3092	broad.mit.edu;bcgsc.ca	37	7	75184773	75184773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HIP1	NM_005338	exon19	c.A1910G	p.D637G	.	.	281	11	84	0	.	1085
HIPK3	10114	bcgsc.ca	37	11	33370740	33370740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HIPK3	NM_005734	exon14	c.T2714C	p.I905T	.	.	336	8	81	0	.	336
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19376069	19376069	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HIRA	NM_003325	exon10	c.T945C	p.C315C	.	.	100	41	41	0	.	91
HIST1H2BH	8345	bcgsc.ca	37	6	26251897	26251897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HIST1H2BH	NM_003524	exon1	c.T19C	p.S7P	.	.	268	9	100	2	.	93
HLA-B	3106	bcgsc.ca	37	6	31324100	31324100	+	Missense_Mutation	SNP	G	G	T	rs1050654	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HLA-B	NM_005514	exon3	c.C463A	p.R155S	.	.	203	16	69	6	T|0.427;G|0.573	90
HLA-DRB1	3123	bcgsc.ca	37	6	32549481	32549481	+	Missense_Mutation	SNP	C	C	T	rs78916069	bycluster	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HLA-DRB1	NM_002124	exon3	c.G505A	p.A169T	.	.	450	48	123	1	.	1
HLA-DRB1	3123	bcgsc.ca	37	6	32557423	32557423	+	Silent	SNP	G	G	T	rs9256943	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HLA-DRB1	NM_002124	exon1	c.C97A	p.R33R	.	.	191	30	40	2	G|0.691;T|0.309	1
HLA-DRB1	3123	bcgsc.ca	37	6	32557436	32557436	+	Missense_Mutation	SNP	C	C	G	rs201614260	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HLA-DRB1	NM_002124	exon1	c.G84C	p.L28F	.	.	239	15	45	0	C|0.936;G|0.064	1
HLA-DRB1	3123	bcgsc.ca	37	6	32557446	32557446	+	Missense_Mutation	SNP	G	G	C	rs148093782	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HLA-DRB1	NM_002124	exon1	c.C74G	p.P25R	.	.	292	18	56	0	G|0.919;C|0.081	1
HMCN1	83872	bcgsc.ca	37	1	185894182	185894182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HMCN1	NM_031935	exon9	c.C1289T	p.A430V	.	.	137	6	53	0	.	113
HMCN1	83872	bcgsc.ca	37	1	186151412	186151412	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HMCN1	NM_031935	exon105	c.A16407G	p.T5469T	.	.	225	6	69	0	.	113
HMGXB4	10042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35661228	35661228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HMGXB4	NM_001003681	exon5	c.G847A	p.D283N	.	.	228	72	72	0	.	272
HNRNPCL1	343069	bcgsc.ca	37	1	12907777	12907777	+	Silent	SNP	T	T	C	rs28391533	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HNRNPCL1	NM_001013631	exon2	c.A366G	p.G122G	.	.	86	57	55	2	T|0.750;C|0.250	68
HNRNPCL1	343069	bcgsc.ca	37	1	12907781	12907781	+	Missense_Mutation	SNP	T	T	C	rs28441396	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HNRNPCL1	NM_001013631	exon2	c.A362G	p.D121G	.	.	93	65	59	3	T|0.750;C|0.250	68
HNRNPH2	3188	bcgsc.ca	37	X	100668094	100668094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HNRNPH2	NM_001032393	exon2	c.A1118G	p.D373G	.	.	142	5	56	0	.	130
HOPX	84525	bcgsc.ca	37	4	57516907	57516907	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HOPX	NM_001145460	exon4	c.T270C	p.H90H	.	.	165	5	77	0	.	22
HPS5	11234	bcgsc.ca	37	11	18319175	18319175	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HPS5	NM_181507	exon11	c.A1254G	p.E418E	.	.	229	6	53	0	.	133
HRH4	59340	bcgsc.ca	37	18	22057062	22057062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HRH4	NM_021624	exon3	c.T709C	p.S237P	.	.	150	5	54	0	.	92
HS1BP3	64342	hgsc.bcm.edu	37	2	20818851	20818852	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HS1BP3	NM_022460	exon7	c.1075_1076insG	p.Q359fs	.	.	135	8	35	0	.	91
HSD17B13	345275	bcgsc.ca	37	4	88236720	88236720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HSD17B13	NM_178135	exon4	c.A482G	p.E161G	.	.	72	4	39	0	.	90
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123517143	123517143	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HYAL4	NM_012269	exon5	c.T1380A	p.P460P	.	.	302	112	106	0	.	91
HYDIN	54768	ucsc.edu	37	16	70866760	70866760	+	Silent	SNP	C	C	T	rs3843041	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	HYDIN	NM_001270974	exon80	c.G13890A	p.A4630A	.	.	20	9	12	1	C|0.802;T|0.198	92
IFIT1B	439996	bcgsc.ca	37	10	91143255	91143255	+	Missense_Mutation	SNP	A	A	G	rs201316227	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IFIT1B	NM_001010987	exon2	c.A185G	p.K62R	.	.	141	5	71	0	A|0.999;C|0.001	90
IFRD2	7866	broad.mit.edu	37	3	50326768	50326768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IFRD2	NM_006764	exon8	c.T995C	p.L332P	.	.	222	6	59	1	.	212
IGDCC4	57722	ucsc.edu	37	15	65678378	65678378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IGDCC4	NM_020962	exon18	c.T2971C	p.S991P	.	.	56	4	21	0	.	93
IGSF1	3547	bcgsc.ca	37	X	130411847	130411847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IGSF1	NM_001170961	exon13	c.T2318C	p.L773P	.	.	145	5	51	0	.	133
IL17RD	54756	bcgsc.ca	37	3	57140030	57140030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IL17RD	NM_017563	exon7	c.A602G	p.K201R	.	.	122	6	35	0	.	500
IL1RAPL2	26280	bcgsc.ca	37	X	105010997	105010997	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IL1RAPL2	NM_017416	exon11	c.A1404G	p.R468R	.	.	143	5	76	0	.	194
ILF3	3609	bcgsc.ca	37	19	10794137	10794137	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ILF3	NM_017620	exon15	c.T1782C	p.P594P	.	.	144	5	47	0	.	93
IMPG1	3617	bcgsc.ca	37	6	76657184	76657184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IMPG1	NM_001563	exon14	c.G1891T	p.G631W	.	.	92	4	61	0	.	93
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212184718	212184718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	INTS7	NM_015434	exon5	c.A555G	p.Q185Q	.	.	559	39	153	0	.	90
INTS9	55756	bcgsc.ca	37	8	28627459	28627459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	INTS9	NM_018250	exon16	c.C1747T	p.P583S	.	.	65	4	42	0	.	24
IRF5	3663	bcgsc.ca	37	7	128587374	128587374	+	Missense_Mutation	SNP	G	G	A	rs113806178	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IRF5	NM_001098629	exon6	c.G572A	p.R191Q	.	.	81	0	18	0	G|0.715;A|0.285	226
IRF5	3663	bcgsc.ca	37	7	128587381	128587381	+	Silent	SNP	T	T	C	rs79724471	byfrequency;by1000genomes	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IRF5	NM_001098629	exon6	c.T579C	p.P193P	.	.	82	1	20	3	T|0.661;C|0.339	226
ITGA2	3673	bcgsc.ca	37	5	52376363	52376363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ITGA2	NM_002203	exon25	c.T2951C	p.V984A	.	.	78	4	46	0	.	226
ITGB5	3693	bcgsc.ca	37	3	124485106	124485106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ITGB5	NM_002213	exon13	c.G2104A	p.G702R	.	.	175	6	47	0	.	227
ITIH1	3697	broad.mit.edu	37	3	52821620	52821620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ITIH1	NM_002215	exon16	c.C1916T	p.P639L	.	.	305	8	92	0	.	93
ITIH6	347365	bcgsc.ca	37	X	54800517	54800517	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_198510	exon6	c.A900G	p.E300E	.	.	244	6	92	0	.	.
IVL	3713	bcgsc.ca	37	1	152882521	152882521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	IVL	NM_005547	exon2	c.A248G	p.Q83R	.	.	62	4	28	0	.	93
JMY	133746	bcgsc.ca	37	5	78573873	78573873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	JMY	NM_152405	exon2	c.A1173G	p.R391R	.	.	104	5	40	0	.	227
KAT8	84148	bcgsc.ca	37	16	31138587	31138587	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_182958	exon5	c.C594T	p.P198P	.	.	202	6	69	0	.	.
KCNH2	3757	bcgsc.ca	37	7	150644749	150644749	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KCNH2	NM_000238	exon12	c.G2910A	p.G970G	.	.	116	5	36	0	.	94
KCNJ18	100134444	bcgsc.ca	37	17	21319465	21319465	+	Silent	SNP	T	T	C	rs77724065	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001194958	exon3	c.T811C	p.L271L	.	.	229	25	64	0	T|0.500;C|0.500	.
KCNJ18	100134444	bcgsc.ca	37	17	21319488	21319488	+	Silent	SNP	C	C	T	rs77176173	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001194958	exon3	c.C834T	p.S278S	.	.	220	22	60	1	C|0.989;T|0.011	.
KCNN1	3780	bcgsc.ca	37	19	18099285	18099285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KCNN1	NM_002248	exon7	c.C1121T	p.A374V	.	.	74	4	36	0	.	22
KCTD3	51133	hgsc.bcm.edu	37	1	215747171	215747171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KCTD3	NM_016121	exon2	c.126delT	p.S42fs	.	.	610	7	159	3	.	93
KERA	11081	bcgsc.ca	37	12	91449766	91449766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KERA	NM_007035	exon2	c.G293T	p.R98I	.	.	77	4	139	0	.	91
KIAA0020	9933	bcgsc.ca	37	9	2831343	2831343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIAA0020	NM_014878	exon6	c.T518C	p.I173T	.	.	161	5	79	0	.	91
KIAA0947	23379	broad.mit.edu;bcgsc.ca	37	5	5463051	5463051	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIAA0947	NM_015325	exon13	c.C3604G	p.L1202V	.	.	655	13	116	0	.	48
KIF20B	9585	broad.mit.edu;bcgsc.ca	37	10	91497228	91497228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIF20B	NM_016195	exon20	c.T2510C	p.I837T	.	.	328	9	105	0	.	93
KIF4B	285643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154396242	154396242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIF4B	NM_001099293	exon1	c.C2823G	p.S941R	.	.	484	86	103	1	.	1
KIF5B	3799	hgsc.bcm.edu	37	10	32311826	32311826	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIF5B	NM_004521	exon16	c.1864delA	p.M622fs	.	.	1084	12	160	1	.	399
KIR3DL1	3811	ucsc.edu	37	19	55329901	55329901	+	Missense_Mutation	SNP	A	A	G	rs643347	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KIR3DL1	NM_013289	exon3	c.A202G	p.I68V	.	.	85	30	32	12	A|0.545;G|0.455	95
KLHDC2	23588	broad.mit.edu	37	14	50249607	50249607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KLHDC2	NM_014315	exon13	c.T1157C	p.L386P	.	.	253	7	75	1	.	91
KLK2	3817	bcgsc.ca	37	19	51380252	51380252	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KLK2	NM_001002231	exon4	c.A618G	p.K206K	.	.	226	7	73	0	.	227
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	135025348	135025348	+	Missense_Mutation	SNP	G	G	T	rs201175312	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KNDC1	NM_152643	exon23	c.G4222T	p.G1408C	.	.	36	21	11	0	G|0.999;A|0.001	229
KRBA1	84626	bcgsc.ca	37	7	149422538	149422538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRBA1	.	.	.	.	.	.	70	5	33	0	.	91
KRT25	147183	bcgsc.ca	37	17	38911473	38911473	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRT25	NM_181534	exon1	c.C51T	p.T17T	.	.	122	6	37	0	.	92
KRT3	3850	bcgsc.ca	37	12	53189427	53189427	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRT3	NM_057088	exon1	c.G400C	p.A134P	.	.	149	31	40	3	.	90
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52826871	52826871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRT75	NM_004693	exon2	c.G664T	p.E222X	.	.	192	83	53	0	.	90
KRTAP13-2	337959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31744410	31744410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP13-2	NM_181621	exon1	c.G122T	p.C41F	.	.	225	76	79	0	.	90
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP4-3	NM_033187	exon1	c.T321C	p.S107S	.	.	310	26	91	0	.	22
KRTAP5-10	387273	bcgsc.ca	37	11	71276921	71276921	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP5-10	NM_001012710	exon1	c.C288T	p.S96S	.	.	168	40	39	0	.	91
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71277197	71277197	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP5-10	NM_001012710	exon1	c.T564C	p.C188C	.	.	234	33	76	0	.	91
KRTAP5-10	387273	hgsc.bcm.edu;bcgsc.ca	37	11	71276918	71276918	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP5-10	NM_001012710	exon1	c.C285T	p.G95G	.	.	158	40	39	0	.	91
KRTAP5-4	387267	bcgsc.ca	37	11	1642985	1642985	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001012709	exon1	c.C339T	p.S113S	.	.	200	49	36	0	.	.
KRTAP5-6	440023	bcgsc.ca	37	11	1718676	1718676	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP5-6	NM_001012416	exon1	c.A201G	p.K67K	.	.	282	31	77	3	.	90
KRTAP6-3	337968	bcgsc.ca	37	21	31964941	31964944	+	Frame_Shift_Del	DEL	AGGC	AGGC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AGGC	AGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_181605	exon1	c.177_180del	p.59_60del	.	.	489	60	72	0	.	.
KRTAP9-2	83899	ucsc.edu	37	17	39382942	39382942	+	Silent	SNP	C	C	A	rs79961737		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	KRTAP9-2	NM_031961	exon1	c.C36A	p.T12T	.	.	178	63	64	23	C|0.125;A|0.875	23
L3MBTL3	84456	broad.mit.edu;bcgsc.ca	37	6	130404841	130404841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	L3MBTL3	NM_032438	exon15	c.T1398C	p.A466A	.	.	406	9	134	0	.	96
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52251010	52251010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LEO1	NM_138792	exon6	c.C1174A	p.Q392K	.	.	280	101	101	0	.	68
LEUTX	342900	bcgsc.ca	37	19	40276455	40276455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001143832	exon3	c.T187C	p.S63P	.	.	95	14	37	0	.	.
LILRA6	79168	ucsc.edu	37	19	54745989	54745989	+	Missense_Mutation	SNP	G	G	C	rs16985555	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LILRA6	NM_024318	exon3	c.C268G	p.Q90E	.	.	833	287	127	9	G|0.667;C|0.333	24
LILRA6	79168	ucsc.edu	37	19	54745993	54745993	+	Missense_Mutation	SNP	C	C	T	rs11673178	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LILRA6	NM_024318	exon3	c.G264A	p.M88I	.	.	869	313	130	9	C|0.955;T|0.045	24
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55148212	55148212	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LILRB1	NM_001081637	exon15	c.G1842A	p.V614V	.	.	385	105	119	0	.	137
LILRB1	10859	mdanderson.org	37	19	55145453	55145453	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LILRB1	NM_001081637	exon9	c.C1344T	p.T448T	.	.	378	28	95	0	.	137
LMBRD1	55788	bcgsc.ca	37	6	70407493	70407493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LMBRD1	NM_018368	exon14	c.T1379C	p.L460P	.	.	89	4	45	0	.	91
LNP1	348801	ucsc.edu	37	3	100170596	100170596	+	Missense_Mutation	SNP	T	T	C	rs75122231	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LNP1	NM_001085451	exon3	c.T190C	p.C64R	.	.	246	47	58	1	A|0.001;C|0.044;T|0.955	22
LNP1	348801	ucsc.edu	37	3	100170598	100170598	+	Silent	SNP	C	C	T	rs78633312	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LNP1	NM_001085451	exon3	c.C192T	p.C64C	.	.	238	46	57	2	C|0.817;T|0.183	22
LNP1	348801	ucsc.edu	37	3	100170600	100170600	+	Missense_Mutation	SNP	A	A	T	rs76354691	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LNP1	NM_001085451	exon3	c.A194T	p.H65L	.	.	235	46	57	4	A|0.818;T|0.182	22
LNX2	222484	bcgsc.ca	37	13	28141781	28141781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LNX2	NM_153371	exon4	c.T851C	p.L284P	.	.	84	4	48	0	.	228
LOC100130700	0	bcgsc.ca	37	16	34741120	34741120	+	RNA	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	164	6	78	0	.	.
LOC400891	0	bcgsc.ca	37	22	21402305	21402305	+	RNA	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	93	5	34	0	.	.
LOC440563	0	bcgsc.ca	37	1	13183567	13183567	+	Silent	SNP	C	C	T	rs78160026	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001136561	exon2	c.G306A	p.A102A	.	.	215	66	95	2	C|0.333;T|0.667	.
LOC642236	0	bcgsc.ca	37	9	68433481	68433481	+	RNA	SNP	T	T	C	rs201799974		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	693	3	144	0	.	.
LOC643387	0	broad.mit.edu	37	2	239141600	239141600	+	RNA	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	590	14	109	1	.	.
LOC644669	0	broad.mit.edu	37	18	15323273	15323273	+	RNA	SNP	G	G	C	rs71354235		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	864	12	150	1	G|0.500;C|0.500	.
LOC645166	0	broad.mit.edu	37	1	148933289	148933289	+	RNA	SNP	A	A	G	rs9729175	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NR_027355	exon3	c.236-2A>G	.	.	.	116	14	24	0	A|0.939;G|0.061	.
LPAR4	2846	ucsc.edu;bcgsc.ca	37	X	78011334	78011334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LPAR4	NM_005296	exon2	c.A968T	p.Y323F	.	.	40	4	50	0	.	133
LPHN3	23284	bcgsc.ca	37	4	62903553	62903553	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LPHN3	NM_015236	exon21	c.A3492G	p.G1164G	.	.	91	4	53	0	.	508
LPO	4025	bcgsc.ca	37	17	56324872	56324872	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LPO	NM_006151	exon4	c.C198T	p.T66T	.	.	95	6	34	0	.	91
LRP2	4036	bcgsc.ca	37	2	170103905	170103905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRP2	NM_004525	exon20	c.A2891G	p.D964G	.	.	137	6	44	0	.	175
LRP6	4040	hgsc.bcm.edu	37	12	12315260	12315261	+	Frame_Shift_Ins	INS	-	-	A	rs148592779	by1000genomes	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRP6	NM_002336	exon10	c.2146_2147insT	p.G716fs	.	.	195	15	57	0	.	661
LRRC18	474354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50122143	50122143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRC18	NM_001006939	exon1	c.A58G	p.N20D	.	.	53	21	37	0	.	92
LRRC33	375387	ucsc.edu	37	3	196387163	196387163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRC33	NM_198565	exon3	c.C649T	p.L217F	.	.	42	4	22	0	.	92
LRRC38	126755	bcgsc.ca	37	1	13802469	13802469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001010847	exon2	c.T730C	p.S244P	.	.	129	6	64	0	.	.
LRRFIP1	9208	bcgsc.ca	37	2	238661959	238661959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRFIP1	NM_001137550	exon15	c.T875C	p.L292P	.	.	80	4	29	0	.	153
LRRK2	120892	bcgsc.ca	37	12	40757330	40757330	+	Silent	SNP	A	A	G	rs33962975	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRK2	NM_198578	exon48	c.A7155G	p.G2385G	.	.	91	5	94	0	A|0.901;G|0.099	533
LRRK2	120892	bcgsc.ca	37	12	40758731	40758731	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LRRK2	NM_198578	exon49	c.T7269C	p.T2423T	.	.	49	4	59	0	.	533
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65320914	65320914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	LTBP3	NM_001130144	exon4	c.A952C	p.K318Q	.	.	160	66	48	0	.	91
MACF1	23499	bcgsc.ca	37	1	39908107	39908107	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MACF1	NM_012090	exon74	c.G12795A	p.L4265L	.	.	134	5	70	0	.	165
MACF1	23499	bcgsc.ca	37	1	39914393	39914393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MACF1	NM_012090	exon81	c.T14039C	p.V4680A	.	.	84	4	49	0	.	165
MADCAM1	8174	bcgsc.ca	37	19	501802	501802	+	Missense_Mutation	SNP	G	G	C	rs75905809		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MADCAM1	NM_130760	exon4	c.G801C	p.K267N	.	.	97	29	26	1	G|0.500;C|0.500	90
MAGEA10	4109	bcgsc.ca	37	X	151303127	151303127	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAGEA10	NM_001011543	exon5	c.T966C	p.D322D	.	.	117	5	47	0	.	130
MAGEB16	139604	bcgsc.ca	37	X	35820422	35820422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAGEB16	NM_001099921	exon2	c.A109G	p.T37A	.	.	74	4	34	0	.	66
MAGEC1	9947	bcgsc.ca	37	X	140993913	140993913	+	Silent	SNP	C	C	G	rs176041	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAGEC1	NM_005462	exon4	c.C723G	p.S241S	.	.	323	57	93	5	C|0.664;G|0.336	133
MAGEC1	9947	bcgsc.ca	37	X	140994037	140994037	+	Missense_Mutation	SNP	C	C	A	rs176045	bycluster;byfrequency;by1000genomes	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAGEC1	NM_005462	exon4	c.C847A	p.L283I	.	.	172	34	44	0	C|0.567;A|0.433	133
MAGEC1	9947	bcgsc.ca	37	X	140994085	140994085	+	Missense_Mutation	SNP	C	C	G	rs176046	bycluster;byfrequency;by1000genomes	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAGEC1	NM_005462	exon4	c.C895G	p.P299A	.	.	176	57	62	6	C|0.789;G|0.211	133
MAMDC2	256691	broad.mit.edu;bcgsc.ca	37	9	72746454	72746454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAMDC2	NM_153267	exon7	c.T920C	p.F307S	.	.	335	9	151	1	.	91
MAMSTR	284358	bcgsc.ca	37	19	49217002	49217002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAMSTR	NM_001130915	exon9	c.A935G	p.D312G	.	.	129	6	37	0	.	91
MAN2B2	23324	bcgsc.ca	37	4	6612641	6612641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAN2B2	NM_015274	exon14	c.A2294G	p.E765G	.	.	203	6	61	0	.	92
MANSC4	100287284	bcgsc.ca	37	12	27924187	27924187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001146221	exon1	c.T23C	p.V8A	.	.	142	6	53	0	.	.
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	12016635	12016636	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP2K4	NM_003010	exon7	c.771_772del	p.257_258del	.	.	71	37	50	0	.	3134
MAP3K6	9064	bcgsc.ca	37	1	27688075	27688075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP3K6	NM_004672	exon11	c.T1622C	p.L541P	.	.	65	4	48	0	.	1523
MAP3K9	4293	bcgsc.ca	37	14	71199698	71199698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP3K9	NM_033141	exon12	c.T2430C	p.G810G	.	.	102	7	41	0	.	546
MAP4K2	5871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64564456	64564456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP4K2	NM_004579	exon20	c.C1405A	p.H469N	.	.	130	57	53	0	.	360
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu	37	2	102452432	102452432	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP4K4	NM_004834	exon9	c.765delA	p.S255fs	.	.	769	11	154	0	.	547
MAP7D1	55700	bcgsc.ca	37	1	36641816	36641816	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP7D1	NM_018067	exon7	c.G867T	p.L289L	.	.	72	5	31	1	.	138
MAP7D2	256714	bcgsc.ca	37	X	20029079	20029079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAP7D2	NM_001168465	exon16	c.G2164A	p.G722S	.	.	73	4	37	0	.	195
MAPKAPK5	8550	bcgsc.ca	37	12	112321574	112321574	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MAPKAPK5	NM_139078	exon9	c.848+2T>C	.	.	.	50	4	28	0	.	1215
MARVELD2	153562	hgsc.bcm.edu	37	5	68736316	68736316	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MARVELD2	NM_001038603	exon6	c.1543delA	p.K515fs	.	.	474	12	148	3	.	22
MBD6	114785	broad.mit.edu;bcgsc.ca	37	12	57920367	57920367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MBD6	NM_052897	exon7	c.C1439G	p.A480G	.	.	186	7	73	0	.	516
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6296583	6296583	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MCPH1	NM_001172574	exon6	c.G546A	p.E182E	.	.	95	28	36	0	.	229
MED21	9412	bcgsc.ca	37	12	27181381	27181381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MED21	NM_004264	exon4	c.T422C	p.L141P	.	.	106	5	31	0	.	227
MED23	9439	bcgsc.ca	37	6	131912509	131912509	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MED23	NM_015979	exon27	c.T3648C	p.A1216A	.	.	68	4	39	0	.	24
MEP1B	4225	bcgsc.ca	37	18	29793086	29793086	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MEP1B	NM_005925	exon11	c.C1143T	p.P381P	.	.	244	6	73	0	.	92
MEPE	56955	bcgsc.ca	37	4	88766248	88766248	+	Silent	SNP	A	A	G	rs200535605	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MEPE	NM_020203	exon4	c.A228G	p.E76E	.	.	73	4	75	0	A|0.999;T|0.000	93
METTL15	196074	ucsc.edu	37	11	28134974	28134974	+	Missense_Mutation	SNP	C	C	A	rs60970073	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	METTL15	NM_152636	exon3	c.C93A	p.N31K	.	.	486	148	110	11	C|0.526;A|0.474	91
METTL21C	196541	broad.mit.edu;bcgsc.ca	37	13	103339359	103339359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	METTL21C	NM_001010977	exon3	c.T331C	p.F111L	.	.	78	7	46	0	.	90
MFSD6L	162387	bcgsc.ca	37	17	8701822	8701822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MFSD6L	NM_152599	exon1	c.T617C	p.V206A	.	.	54	4	37	0	.	90
MIR320B2	100313769	hgsc.bcm.edu	37	1	224444737	224444738	+	RNA	INS	-	-	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	1085	0	176	0	.	.
MKI67	4288	hgsc.bcm.edu;broad.mit.edu	37	10	129904535	129904535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MKI67	NM_002417	exon13	c.5569delA	p.I1857fs	.	.	1203	18	189	0	.	519
MKRN9P	400058	bcgsc.ca	37	12	88177288	88177288	+	RNA	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	168	6	57	0	.	.
MLL3	58508	broad.mit.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MLL3	NM_170606	exon20	c.T3309A	p.C1103X	.	.	609	9	127	1	.	1398
MPG	4350	hgsc.bcm.edu	37	16	135653	135654	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MPG	NM_002434	exon5	c.774_775insG	p.A258fs	.	.	90	11	25	0	.	228
MPV17L	255027	bcgsc.ca	37	16	15501901	15501901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MPV17L	NM_001128423	exon4	c.T523C	p.F175L	.	.	156	5	59	0	.	90
MRPL10	124995	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	45906024	45906024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MRPL10	NM_148887	exon3	c.C95T	p.T32I	.	.	39	16	15	0	.	91
MRPS27	23107	bcgsc.ca	37	5	71528344	71528344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MRPS27	NM_015084	exon7	c.T517C	p.F173L	.	.	86	4	64	0	.	90
MS4A14	84689	bcgsc.ca	37	11	60184447	60184447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MS4A14	NM_001261828	exon6	c.T2105C	p.V702A	.	.	64	4	34	0	.	90
MST1L	11223	ucsc.edu	37	1	17085564	17085564	+	Missense_Mutation	SNP	A	A	G	rs80308386	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001271733	exon9	c.T1157C	p.L386P	.	.	95	34	59	7	A|0.625;G|0.375	.
MTIF2	4528	bcgsc.ca	37	2	55463923	55463923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MTIF2	NM_002453	exon16	c.A2045G	p.D682G	.	.	81	4	31	0	.	91
MTMR2	8898	bcgsc.ca	37	11	95595462	95595462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MTMR2	NM_016156	exon4	c.A331G	p.R111G	.	.	95	4	41	0	.	91
MUC16	94025	bcgsc.ca	37	19	8966663	8966663	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon81	c.T43290C	p.S14430S	.	.	177	6	66	0	.	566
MUC16	94025	hgsc.bcm.edu	37	19	8961997	8961998	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon83	c.43380_43381insT	p.L14460fs	.	.	110	8	37	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9002558	9002558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon51	c.C40258A	p.H13420N	.	.	362	117	99	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087113	9087113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC16	NM_024690	exon1	c.A4702G	p.T1568A	.	.	406	153	139	0	.	566
MUC21	394263	bcgsc.ca	37	6	30955127	30955127	+	Missense_Mutation	SNP	C	C	A	rs9262397	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC21	NM_001010909	exon2	c.C1175A	p.T392N	.	.	185	28	58	3	C|0.899;A|0.101	92
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC2	NM_002457	exon30	c.C4766A	p.T1589N	.	.	173	6	61	1	.	90
MUC4	4585	bcgsc.ca	37	3	195510910	195510910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.C7541A	p.P2514H	.	.	513	23	114	0	.	90
MUC4	4585	bcgsc.ca	37	3	195511412	195511412	+	Missense_Mutation	SNP	T	T	A	rs199878638		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.A7039T	p.T2347S	.	.	238	50	69	0	.	90
MUC4	4585	bcgsc.ca	37	3	195511431	195511431	+	Silent	SNP	A	A	G	rs201715837	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.T7020C	p.T2340T	.	.	258	59	69	3	A|0.981;G|0.019	90
MUC4	4585	bcgsc.ca	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.C6540T	p.T2180T	.	.	318	22	70	1	G|0.998;A|0.002	90
MUC4	4585	broad.mit.edu	37	3	195508406	195508406	+	Missense_Mutation	SNP	C	C	T	rs200551462		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.G10045A	p.D3349N	.	.	298	10	80	0	C|0.998;T|0.002	90
MUC4	4585	broad.mit.edu	37	3	195509498	195509498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.G8953A	p.A2985T	.	.	181	12	46	0	.	90
MUC4	4585	broad.mit.edu	37	3	195512629	195512629	+	Missense_Mutation	SNP	C	C	A	rs74830022		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.G5822T	p.S1941I	.	.	369	14	116	1	C|0.500;A|0.500	90
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195513413	195513413	+	Missense_Mutation	SNP	G	G	A	rs7374593	by2hit2allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.C5038T	p.P1680S	.	.	464	26	99	1	.	90
MUC4	4585	hgsc.bcm.edu	37	3	195511294	195511294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.C7157A	p.P2386H	.	.	351	17	108	0	.	90
MUC4	4585	ucsc.edu;bcgsc.ca	37	3	195510912	195510912	+	Silent	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC4	NM_018406	exon2	c.A7539T	p.L2513L	.	.	500	58	111	2	.	90
MUC5B	727897	ucsc.edu	37	11	1267475	1267475	+	Missense_Mutation	SNP	T	T	C	rs58125533		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_002458	exon31	c.T9365C	p.M3122T	.	.	159	35	54	0	T|0.926;C|0.074	.
MUC6	4588	hgsc.bcm.edu	37	11	1017892	1017894	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC6	NM_005961	exon31	c.4907_4909del	p.1636_1637del	.	.	1860	0	198	0	.	23
MUC7	4589	ucsc.edu;bcgsc.ca	37	4	71347240	71347240	+	Missense_Mutation	SNP	T	T	C	rs145745951	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MUC7	NM_001145007	exon4	c.T779C	p.V260A	.	.	458	71	155	9	T|1.000;C|0.000	93
MYCT1	80177	bcgsc.ca	37	6	153043353	153043353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYCT1	NM_025107	exon2	c.T673C	p.Y225H	.	.	122	5	35	0	.	91
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23866803	23866803	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYH6	NM_002471	exon16	c.A1911T	p.K637N	.	.	89	23	37	0	.	94
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23883217	23883217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYH7	NM_000257	exon38	c.C5654T	p.A1885V	.	.	121	51	58	0	.	94
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	45002481	45002481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYO1G	NM_033054	exon22	c.C2914A	p.L972M	.	.	47	18	8	0	.	137
MYO7B	4648	bcgsc.ca	37	2	128394411	128394411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYO7B	NM_001080527	exon46	c.A6172G	p.S2058G	.	.	139	5	46	2	.	47
MYO9A	4649	bcgsc.ca	37	15	72286846	72286846	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYO9A	NM_006901	exon10	c.A1551G	p.A517A	.	.	119	6	52	0	.	93
MYO9A	4649	bcgsc.ca	37	15	72313309	72313309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MYO9A	NM_006901	exon5	c.A1048G	p.R350G	.	.	167	5	61	0	.	93
MZT1	440145	bcgsc.ca	37	13	73301728	73301728	+	Missense_Mutation	SNP	T	T	C	rs1465896	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	MZT1	NM_001071775	exon1	c.A13G	p.S5G	.	.	23	23	12	1	T|0.093;C|0.907	22
N4BP3	23138	bcgsc.ca	37	5	177547470	177547470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	N4BP3	NM_015111	exon3	c.T622C	p.F208L	.	.	148	6	50	0	.	90
NAP1L1	4673	bcgsc.ca	37	12	76461152	76461152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NAP1L1	NM_004537	exon4	c.A205G	p.S69G	.	.	89	4	39	0	.	92
NBPF9	400818	bcgsc.ca	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	C	G	rs3183413		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	751	63	173	1	.	.
NBPF9	400818	bcgsc.ca	37	1	144828688	144828688	+	Silent	SNP	C	C	T	rs3183414		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	752	58	170	0	.	.
NBPF9	400818	broad.mit.edu	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	153	39	62	0	G|0.500;A|0.500	.
NCAM1	4684	bcgsc.ca	37	11	113078592	113078592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NCAM1	NM_001242608	exon8	c.A784G	p.K262E	.	.	120	6	42	0	.	23
NCAM1	4684	hgsc.bcm.edu	37	11	112832341	112832392	+	Frame_Shift_Del	DEL	CAAACTAAGGATTTCATTTGGACTTTGTTTTTCCTGGGAACTGCAGGTACAT	CAAACTAAGGATTTCATTTGGACTTTGTTTTTCCTGGGAACTGCAGGTACAT	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CAAACTAAGGATTTCATTTGGACTTTGTTTTTCCTGGGAACTGCAGGTACAT	CAAACTAAGGATTTCATTTGGACTTTGTTTTTCCTGGGAACTGCAGGTACAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NCAM1	NM_001242608	exon2	c.7_52del	p.3_18del	.	.	203	0	23	0	.	23
NCKAP1	10787	broad.mit.edu	37	2	183822244	183822244	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NCKAP1	NM_205842	exon20	c.A1980G	p.E660E	.	.	596	9	145	0	.	92
NCKAP5L	57701	ucsc.edu;bcgsc.ca	37	12	50189512	50189512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NCKAP5L	NM_001037806	exon8	c.T2131C	p.S711P	.	.	106	19	40	3	.	68
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	.	.	173	7	46	0	.	292
NCOR1P1	149934	bcgsc.ca	37	20	26084228	26084228	+	RNA	SNP	G	G	A	rs75212180	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	423	43	115	0	G|0.500;A|0.500	.
NCOR1P1	149934	bcgsc.ca	37	20	26084251	26084251	+	RNA	SNP	C	C	T	rs61752036	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	386	45	109	0	C|0.400;T|0.600	.
NDUFAF4	29078	bcgsc.ca	37	6	97339038	97339038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NDUFAF4	NM_014165	exon3	c.T470C	p.V157A	.	.	202	6	89	0	.	91
NEDD1	121441	bcgsc.ca	37	12	97339577	97339577	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NEDD1	NM_001135175	exon13	c.T1782C	p.I594I	.	.	152	5	63	0	.	90
NEU1	4758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31830507	31830507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NEU1	NM_000434	exon1	c.G47T	p.G16V	.	.	105	32	33	0	.	91
NID2	22795	bcgsc.ca	37	14	52496367	52496367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NID2	NM_007361	exon10	c.A2299G	p.S767G	.	.	141	5	50	0	.	158
NLGN1	22871	bcgsc.ca	37	3	173998963	173998963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NLGN1	NM_014932	exon7	c.T2342C	p.I781T	.	.	55	4	49	0	.	231
NLN	57486	bcgsc.ca	37	5	65081690	65081690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NLN	NM_020726	exon7	c.T911C	p.L304P	.	.	118	6	44	0	.	90
NLRP12	91662	bcgsc.ca	37	19	54313806	54313806	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NLRP12	NM_144687	exon3	c.A1107G	p.E369E	.	.	112	5	39	0	.	211
NMBR	4829	bcgsc.ca	37	6	142396963	142396963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NMBR	NM_002511	exon3	c.G995A	p.R332K	.	.	131	5	53	0	.	946
NME9	347736	bcgsc.ca	37	3	138043771	138043771	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	390	10	106	0	.	.
NOL6	65083	bcgsc.ca	37	9	33468064	33468064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NOL6	NM_022917	exon11	c.C1388T	p.P463L	.	.	74	4	45	0	.	92
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117696926	117696926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NOS1	NM_000620	exon15	c.A2377G	p.M793V	.	.	156	58	43	0	.	154
NOTCH1	4851	broad.mit.edu	37	9	139413250	139413250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NOTCH1	NM_017617	exon6	c.G892A	p.E298K	.	.	25	3	10	0	.	5459
NPAS3	64067	bcgsc.ca	37	14	34243620	34243620	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NPAS3	NM_001164749	exon8	c.T930C	p.G310G	.	.	132	7	56	0	.	93
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21125036	21125036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NPC1	NM_000271	exon12	c.A1835G	p.E612G	.	.	334	115	89	0	.	92
NPC1L1	29881	bcgsc.ca	37	7	44573113	44573113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NPC1L1	NM_001101648	exon8	c.T2326C	p.S776P	.	.	229	6	79	0	.	94
NPM1	4869	bcgsc.ca	37	5	170827195	170827195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NPM1	NM_199185	exon7	c.A563G	p.E188G	.	.	162	6	45	0	.	12448
NR5A2	2494	bcgsc.ca	37	1	200080373	200080373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NR5A2	NM_205860	exon6	c.A1154C	p.E385A	.	.	130	6	41	0	.	227
NUMA1	4926	bcgsc.ca	37	11	71726209	71726209	+	Silent	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NUMA1	NM_006185	exon15	c.T2340G	p.A780A	.	.	70	12	23	0	.	633
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu	37	11	71726211	71726220	+	Frame_Shift_Del	DEL	CCTGATGGGC	CCTGATGGGC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CCTGATGGGC	CCTGATGGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NUMA1	NM_006185	exon15	c.2329_2338del	p.777_780del	.	.	70	10	23	0	.	633
NUP98	4928	bcgsc.ca	37	11	3697764	3697764	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	NUP98	NM_016320	exon32	c.T5160C	p.S1720S	.	.	165	5	61	0	.	703
ODF1	4956	ucsc.edu	37	8	103573015	103573015	+	Missense_Mutation	SNP	A	A	G	rs62523271	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ODF1	NM_024410	exon2	c.A656G	p.N219S	.	.	236	1	22	4	A|0.711;G|0.289	70
OR10A5	144124	mdanderson.org	37	11	6867462	6867462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR10A5	NM_178168	exon1	c.G549A	p.P183P	.	.	438	37	104	0	.	71
OR10A5	144124	mdanderson.org	37	11	6867473	6867473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR10A5	NM_178168	exon1	c.A560G	p.K187R	.	.	458	46	114	2	.	71
OR10J3	441911	broad.mit.edu;bcgsc.ca	37	1	159284310	159284310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR10J3	NM_001004467	exon1	c.T140C	p.M47T	.	.	277	9	103	1	.	70
OR13A1	79290	hgsc.bcm.edu	37	10	45799377	45799377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR13A1	NM_001004297	exon4	c.C494A	p.A165D	.	.	30	18	4	0	.	68
OR13C2	392376	ucsc.edu;bcgsc.ca	37	9	107367431	107367431	+	Missense_Mutation	SNP	A	A	T	rs61735925	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR13C2	NM_001004481	exon1	c.T478A	p.S160T	.	.	193	125	109	11	A|0.158;T|0.842	69
OR2L3	391192	hgsc.bcm.edu	37	1	248224587	248224587	+	Missense_Mutation	SNP	A	A	G	rs61525219	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR2L3	NM_001004687	exon1	c.A604G	p.T202A	.	.	564	30	140	0	A|0.998;G|0.002	68
OR2M1P	388762	bcgsc.ca	37	1	248285382	248285382	+	RNA	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR2M1P	.	.	.	.	.	.	345	103	122	0	.	46
OR2T12	127064	broad.mit.edu	37	1	248458051	248458051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR2T12	NM_001004692	exon1	c.C830G	p.T277S	.	.	575	13	142	0	.	71
OR2T4	127074	ucsc.edu	37	1	248525285	248525285	+	Missense_Mutation	SNP	T	T	C	rs28637620	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR2T4	NM_001004696	exon1	c.T403C	p.F135L	.	.	823	179	152	5	T|0.865;C|0.135	68
OR4D9	390199	broad.mit.edu;bcgsc.ca	37	11	59282556	59282556	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR4D9	NM_001004711	exon1	c.G171A	p.T57T	.	.	447	17	120	0	.	68
OR52I2	143502	ucsc.edu	37	11	4608262	4608262	+	Missense_Mutation	SNP	A	A	C	rs79116379		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR52I2	NM_001005170	exon1	c.A220C	p.I74L	.	.	593	150	166	45	A|0.500;C|0.500	91
OR5K2	402135	bcgsc.ca	37	3	98217385	98217385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR5K2	NM_001004737	exon1	c.T861C	p.P287P	.	.	294	7	117	1	.	92
OR8U1	219417	bcgsc.ca	37	11	56143252	56143252	+	Silent	SNP	G	G	A	rs75101573		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR8U1	NM_001005204	exon1	c.G153A	p.A51A	.	.	140	11	113	1	G|0.500;A|0.500	72
OR9A4	130075	bcgsc.ca	37	7	141619408	141619408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OR9A4	NM_001001656	exon1	c.T733C	p.F245L	.	.	162	5	59	0	.	91
OSBP2	23762	bcgsc.ca	37	22	31285218	31285218	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OSBP2	NM_030758	exon6	c.C1473T	p.D491D	.	.	135	5	36	0	.	114
OTOGL	283310	bcgsc.ca	37	12	80735848	80735848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_173591	exon43	c.C5144T	p.T1715I	.	.	223	6	74	0	.	.
OTUD4	54726	broad.mit.edu	37	4	146058966	146058966	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OTUD4	NM_001102653	exon21	c.C2766T	p.S922S	.	.	490	12	173	0	.	565
OTUD4	54726	broad.mit.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OTUD4	NM_001102653	exon21	c.C2726T	p.T909I	.	.	413	12	155	0	.	565
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	.	.	250	7	117	1	.	565
OTUD7A	161725	bcgsc.ca	37	15	31795992	31795992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	OTUD7A	NM_130901	exon7	c.A902G	p.E301G	.	.	141	5	49	0	.	502
PANK3	79646	bcgsc.ca	37	5	167986113	167986113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PANK3	NM_024594	exon6	c.T986C	p.L329P	.	.	140	5	34	0	.	91
PANX2	56666	hgsc.bcm.edu	37	22	50617585	50617608	+	In_Frame_Del	DEL	AGGACGGGGGCCCCCGCCTGCCGC	AGGACGGGGGCCCCCGCCTGCCGC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AGGACGGGGGCCCCCGCCTGCCGC	AGGACGGGGGCCCCCGCCTGCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PANX2	NM_052839	exon3	c.1913_1936del	p.638_646del	.	.	95	31	20	0	.	131
PAPPA	5069	ucsc.edu	37	9	118982371	118982371	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PAPPA	NM_002581	exon5	c.G2074T	p.E692X	.	.	31	4	16	0	.	77
PARD6B	84612	bcgsc.ca	37	20	49366604	49366604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PARD6B	NM_032521	exon3	c.A698G	p.D233G	.	.	117	5	48	0	.	91
PARVG	64098	bcgsc.ca	37	22	44581720	44581720	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PARVG	NM_001254742	exon3	c.C313A	p.R105R	.	.	70	4	30	0	.	90
PAWR	5074	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	80083895	80083895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PAWR	NM_002583	exon2	c.G130T	p.G44W	.	.	22	6	15	0	.	90
PAX3	5077	bcgsc.ca	37	2	223086105	223086105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PAX3	NM_181457	exon6	c.T794C	p.V265A	.	.	83	5	28	0	.	1821
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52588770	52588770	+	Missense_Mutation	SNP	C	C	A	rs143564112	byfrequency;alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PBRM1	NM_018313	exon27	c.G4258T	p.V1420L	.	.	229	83	69	0	C|0.999;T|0.001	575
PBXIP1	57326	bcgsc.ca	37	1	154918584	154918584	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PBXIP1	NM_020524	exon10	c.A1566G	p.P522P	.	.	129	5	48	0	.	153
PBXIP1	57326	bcgsc.ca	37	1	154918728	154918728	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PBXIP1	NM_020524	exon10	c.A1422G	p.G474G	.	.	174	6	46	0	.	153
PCDHB8	56128	hgsc.bcm.edu	37	5	140558314	140558317	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PCDHB8	NM_019120	exon1	c.699_702del	p.233_234del	.	.	111	0	11	0	.	131
PCDHGA1	56114	ucsc.edu	37	5	140712210	140712210	+	Silent	SNP	G	G	T	rs62378403	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PCDHGA1	NM_018912	exon1	c.G1959T	p.P653P	.	.	82	45	21	4	G|0.825;T|0.175	137
PCLO	27445	hgsc.bcm.edu	37	7	82595385	82595385	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PCLO	NM_014510	exon4	c.3719delA	p.K1240fs	.	.	1944	13	198	1	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu	37	7	82595406	82595406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PCLO	NM_014510	exon4	c.3698delA	p.K1233fs	.	.	1823	8	199	0	.	29
PCNT	5116	bcgsc.ca	37	21	47858248	47858248	+	Missense_Mutation	SNP	A	A	G	rs4818842	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PCNT	NM_006031	exon41	c.A9271G	p.S3091G	.	.	154	6	49	0	A|0.979;G|0.021	141
PDILT	204474	hgsc.bcm.edu	37	16	20370700	20370702	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CCA	CCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PDILT	NM_174924	exon12	c.1694_1696del	p.565_566del	.	.	866	16	168	0	.	153
PDK3	5165	broad.mit.edu;bcgsc.ca	37	X	24549826	24549826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PDK3	NM_005391	exon10	c.A1016C	p.Q339P	.	.	395	22	98	1	.	377
PDLIM1	9124	bcgsc.ca	37	10	97006995	97006995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PDLIM1	NM_020992	exon5	c.A662G	p.E221G	.	.	126	5	50	0	.	90
PDP1	54704	bcgsc.ca	37	8	94935753	94935753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PDP1	NM_001161780	exon3	c.A1541G	p.N514S	.	.	199	7	45	0	.	229
PENK	5179	broad.mit.edu	37	8	57358467	57358467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PENK	NM_001135690	exon3	c.C46T	p.P16S	.	.	171	8	40	0	.	517
PFDN2	5202	bcgsc.ca	37	1	161071851	161071851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PFDN2	NM_012394	exon3	c.A275G	p.N92S	.	.	127	5	48	0	.	90
PGK1	5230	bcgsc.ca	37	X	77378756	77378756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PGK1	NM_000291	exon8	c.A821G	p.E274G	.	.	155	5	55	0	.	228
PGM3	5238	broad.mit.edu;bcgsc.ca	37	6	83891485	83891485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PGM3	NM_001199917	exon7	c.T841C	p.F281L	.	.	288	7	82	0	.	90
PGR	5241	bcgsc.ca	37	11	100922171	100922171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PGR	NM_000926	exon5	c.G2341A	p.D781N	.	.	164	6	96	0	.	652
PHF21A	51317	hgsc.bcm.edu	37	11	46001356	46001358	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PHF21A	NM_016621	exon6	c.313_315del	p.105_105del	.	.	1403	16	156	0	.	92
PHLDB3	653583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43983597	43983597	+	Missense_Mutation	SNP	C	C	A	rs200179651	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PHLDB3	NM_198850	exon14	c.G1634T	p.R545L	.	.	165	63	39	0	.	68
PIEZO1	9780	hgsc.bcm.edu	37	16	88789667	88789672	+	In_Frame_Del	DEL	CCTGCT	CCTGCT	-	rs11281795		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CCTGCT	CCTGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001142864	exon32	c.4400_4405del	p.1467_1469del	.	.	31	15	11	0	CCTGCT|0.103;-|0.897	.
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207110487	207110487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PIGR	NM_002644	exon4	c.T998C	p.L333P	.	.	112	30	53	0	.	92
PKHD1	5314	bcgsc.ca	37	6	51523826	51523826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PKHD1	NM_138694	exon61	c.G11098C	p.G3700R	.	.	85	4	54	0	.	603
PLEKHA4	57664	bcgsc.ca	37	19	49355507	49355507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PLEKHA4	NM_020904	exon13	c.T1403C	p.L468P	.	.	137	7	36	0	.	227
PLEKHM1	9842	broad.mit.edu	37	17	43555372	43555372	+	Missense_Mutation	SNP	C	C	T	rs2868645		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PLEKHM1	NM_014798	exon3	c.G190A	p.A64T	.	.	356	24	82	0	.	90
PLP1	5354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103041518	103041518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PLP1	NM_001128834	exon4	c.A316G	p.T106A	.	.	169	131	86	0	.	555
PLXNA4	91584	bcgsc.ca	37	7	132192635	132192635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PLXNA4	NM_001105543	exon2	c.A818G	p.E273G	.	.	131	5	45	0	.	91
PNLIP	5406	bcgsc.ca	37	10	118306810	118306810	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PNLIP	NM_000936	exon3	c.A51G	p.K17K	.	.	78	4	34	0	.	92
POLE2	5427	bcgsc.ca	37	14	50117022	50117022	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POLE2	NM_001197331	exon17	c.T1458C	p.P486P	.	.	182	7	49	0	.	229
POLE2	5427	bcgsc.ca	37	14	50133104	50133104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POLE2	NM_001197331	exon7	c.A520G	p.S174G	.	.	159	5	62	0	.	229
POM121L4P	266697	broad.mit.edu;ucsc.edu	37	22	21044998	21044998	+	RNA	SNP	C	C	T	rs5751737	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	92	22	22	0	C|0.878;T|0.122	.
POM121L4P	266697	ucsc.edu	37	22	21045012	21045012	+	RNA	SNP	T	T	C	rs5760028	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	106	25	28	1	T|0.828;C|0.172	.
POM121L9P	29774	ucsc.edu	37	22	24649633	24649633	+	RNA	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	36	4	21	0	.	.
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	C	T	rs79575795		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POTEC	NM_001137671	exon10	c.G1430A	p.R477Q	.	.	1416	30	189	1	.	3
POTEG	404785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	19553573	19553573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POTEG	NM_001005356	exon1	c.G157T	p.A53S	.	.	1087	131	173	0	.	1
POTEG	404785	ucsc.edu	37	14	19553642	19553642	+	Missense_Mutation	SNP	A	A	G	rs57000026		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POTEG	NM_001005356	exon1	c.A226G	p.S76G	.	.	556	158	127	5	G|1.000;|0.000	1
POU1F1	5449	broad.mit.edu	37	3	87313517	87313517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	POU1F1	NM_001122757	exon3	c.G438T	p.E146D	.	.	246	6	94	0	.	226
PPAPDC1A	196051	bcgsc.ca	37	10	122348972	122348972	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPAPDC1A	NM_001030059	exon7	c.A774G	p.A258A	.	.	159	6	58	0	.	135
PPFIA2	8499	bcgsc.ca	37	12	81693146	81693146	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPFIA2	NM_001220476	exon22	c.A2658G	p.E886E	.	.	72	4	35	0	.	231
PPFIA3	8541	hgsc.bcm.edu	37	19	49651389	49651390	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPFIA3	NM_003660	exon24	c.2885_2886insG	p.L962fs	.	.	132	12	28	0	.	226
PPFIBP2	8495	bcgsc.ca	37	11	7670419	7670419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPFIBP2	NM_003621	exon20	c.T1951C	p.F651L	.	.	328	8	103	1	.	273
PPIAL4G	644591	ucsc.edu	37	1	143767643	143767643	+	Missense_Mutation	SNP	T	T	C	rs78862507	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001123068	exon1	c.A206G	p.H69R	.	.	361	111	70	0	T|0.667;C|0.333	.
PPP1CB	5500	bcgsc.ca	37	2	29016849	29016849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPP1CB	NM_206876	exon8	c.A865G	p.M289V	.	.	357	8	96	1	.	658
PPP1CC	5501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	111162541	111162541	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPP1CC	NM_002710	exon4	c.G447A	p.W149X	.	.	362	40	99	0	.	1082
PPP4R1	9989	bcgsc.ca	37	18	9570523	9570523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PPP4R1	NM_001042388	exon11	c.T1205C	p.L402P	.	.	301	7	79	0	.	227
PRAMEF1	65121	ucsc.edu	37	1	12854356	12854356	+	Missense_Mutation	SNP	T	T	C	rs80079739	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRAMEF1	NM_023013	exon3	c.T580C	p.Y194H	.	.	389	268	152	44	T|0.500;C|0.500	22
PRB4	5545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11461456	11461456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRB4	NM_002723	exon3	c.G461T	p.G154V	.	.	500	173	144	0	.	91
PRCP	5547	hgsc.bcm.edu	37	11	82549604	82549610	+	Frame_Shift_Del	DEL	CTTCTGT	CTTCTGT	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CTTCTGT	CTTCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRCP	NM_199418	exon9	c.1156_1162del	p.386_388del	.	.	69	0	18	0	.	91
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68939468	68939468	+	Silent	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PREX2	NM_025170	exon5	c.G453T	p.L151L	.	.	200	45	71	0	.	390
PRSS53	339105	bcgsc.ca	37	16	31096576	31096576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRSS53	NM_001039503	exon7	c.G889A	p.G297R	.	.	89	5	38	0	.	68
PRSS54	221191	bcgsc.ca	37	16	58314533	58314533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PRSS54	NM_001080492	exon7	c.C783A	p.S261R	.	.	94	5	50	0	.	70
PTPRM	5797	bcgsc.ca	37	18	8085721	8085721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PTPRM	NM_001105244	exon10	c.A1604G	p.Q535R	.	.	175	6	89	0	.	228
PYGL	5836	bcgsc.ca	37	14	51379772	51379772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PYGL	NM_002863	exon13	c.T1595C	p.L532P	.	.	185	6	62	0	.	91
PYGM	5837	bcgsc.ca	37	11	64518887	64518887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	PYGM	NM_005609	exon16	c.A1879G	p.I627V	.	.	155	6	48	0	.	92
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122250816	122250816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	QRFPR	NM_198179	exon6	c.G949A	p.V317M	.	.	108	64	63	0	.	90
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	QRICH2	NM_032134	exon4	c.A1802T	p.D601V	.	.	287	4	67	0	.	94
QRICH2	84074	broad.mit.edu	37	17	74287802	74287802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	QRICH2	NM_032134	exon4	c.A2508G	p.I836M	.	.	385	7	83	0	.	94
R3HCC1	203069	bcgsc.ca	37	8	23152376	23152376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	R3HCC1	NM_001136108	exon7	c.A630G	p.P210P	.	.	65	4	49	0	.	69
RAB11FIP1	80223	bcgsc.ca	37	8	37729978	37729978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAB11FIP1	NM_001002814	exon4	c.T2342C	p.V781A	.	.	91	5	53	0	.	92
RAB2A	5862	broad.mit.edu	37	8	61504462	61504462	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAB2A	NM_002865	exon6	c.T408C	p.A136A	.	.	370	9	86	0	.	659
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220356254	220356254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAB3GAP2	NM_012414	exon20	c.G2018C	p.R673T	.	.	373	116	103	0	.	90
RACGAP1P	83956	bcgsc.ca	37	12	45458678	45458678	+	RNA	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	66	4	32	0	.	.
RAET1L	154064	ucsc.edu	37	6	150343211	150343211	+	Missense_Mutation	SNP	A	A	G	rs912565	bycluster;by2hit2allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAET1L	NM_130900	exon2	c.T254C	p.M85T	.	.	996	286	170	21	G|1.000;|0.000	90
RALGAPA1	253959	hgsc.bcm.edu	37	14	36211617	36211618	+	In_Frame_Ins	INS	-	-	TGACATTTT	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RALGAPA1	NM_014990	exon11	c.1406_1407insAAAATGTCA	p.T469delinsKNVT	.	.	530	73	140	0	.	138
RALGAPB	57148	bcgsc.ca	37	20	37195831	37195831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RALGAPB	NM_020336	exon26	c.G3910A	p.E1304K	.	.	110	5	47	0	.	92
RAP2A	5911	bcgsc.ca	37	13	98086852	98086852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAP2A	NM_021033	exon1	c.A128G	p.E43G	.	.	89	4	55	0	.	1271
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134497245	134497245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RAPGEF1	NM_198679	exon11	c.G1846A	p.G616R	.	.	140	80	58	0	.	849
RASSF6	166824	bcgsc.ca	37	4	74481645	74481645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RASSF6	NM_001270392	exon2	c.T71C	p.F24S	.	.	71	4	47	0	.	319
RBBP6	5930	bcgsc.ca	37	16	24581289	24581289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RBBP6	NM_006910	exon17	c.C3278T	p.S1093F	.	.	308	8	100	0	.	230
RBM45	129831	hgsc.bcm.edu	37	2	178988919	178988920	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RBM45	NM_152945	exon8	c.1134_1135insA	p.C378fs	.	.	494	0	126	0	.	22
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114424168	114424168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001145346	exon1	c.C164A	p.T55N	.	.	62	55	27	0	.	.
RELB	5971	bcgsc.ca	37	19	45506240	45506240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RELB	.	.	.	.	.	.	86	6	31	0	.	847
REP15	387849	bcgsc.ca	37	12	27850153	27850153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	REP15	NM_001029874	exon1	c.A658G	p.S220G	.	.	181	6	54	0	.	91
RERE	473	hgsc.bcm.edu	37	1	8716109	8716109	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RERE	NM_001042681	exon2	c.248delA	p.K83fs	.	.	687	12	174	3	.	515
RETNLB	84666	hgsc.bcm.edu	37	3	108474715	108474716	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RETNLB	NM_032579	exon3	c.246_247insG	p.C82fs	.	.	373	28	57	0	.	91
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56387675	56387675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RFX7	NM_022841	exon9	c.T2251G	p.S751A	.	.	81	37	57	0	.	90
RGAG1	57529	bcgsc.ca	37	X	109694516	109694516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RGAG1	NM_020769	exon3	c.C671A	p.P224H	.	.	67	4	46	0	.	132
RGL1	23179	bcgsc.ca	37	1	183857680	183857680	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RGL1	NM_015149	exon9	c.C1129A	p.R377R	.	.	78	4	51	0	.	725
RGN	9104	bcgsc.ca	37	X	46943949	46943949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RGN	NM_004683	exon3	c.A296G	p.N99S	.	.	118	5	43	0	.	130
RHOQ	23433	hgsc.bcm.edu	37	2	46808174	46808174	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RHOQ	NM_012249	exon5	c.570delA	p.V190fs	.	.	760	24	165	6	.	228
RING1	6015	bcgsc.ca	37	6	33177751	33177751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RING1	NM_002931	exon4	c.A299G	p.D100G	.	.	107	6	34	0	.	159
RIPK2	8767	bcgsc.ca	37	8	90775171	90775171	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RIPK2	NM_003821	exon2	c.A288G	p.E96E	.	.	360	8	92	0	.	523
RLIM	51132	broad.mit.edu	37	X	73812403	73812403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RLIM	NM_183353	exon5	c.G747C	p.Q249H	.	.	115	4	53	0	.	228
RNF139	11236	bcgsc.ca	37	8	125499803	125499803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RNF139	NM_007218	exon2	c.A1913G	p.D638G	.	.	201	6	41	0	.	226
RNF180	285671	bcgsc.ca	37	5	63509479	63509479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RNF180	NM_001113561	exon4	c.A326G	p.Q109R	.	.	156	5	80	0	.	90
RNR2	6053	broad.mit.edu	37	MT	1949	1949	+	RNA	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	243	14	92	0	.	.
ROM1	6094	bcgsc.ca	37	11	62381906	62381906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ROM1	NM_000327	exon2	c.T767C	p.V256A	.	.	86	4	32	0	.	92
RP1	6101	bcgsc.ca	37	8	55537730	55537730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RP1	NM_006269	exon4	c.G1288A	p.V430M	.	.	167	5	62	0	.	102
RP1L1	94137	bcgsc.ca	37	8	10464867	10464867	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RP1L1	NM_178857	exon4	c.T6741C	p.G2247G	.	.	73	4	50	0	.	139
RP1L1	94137	bcgsc.ca	37	8	10467702	10467702	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RP1L1	NM_178857	exon4	c.A3906G	p.Q1302Q	.	.	253	78	93	0	.	139
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10467671	10467673	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CTC	CTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RP1L1	NM_178857	exon4	c.3935_3937del	p.1312_1313del	.	.	450	97	111	0	.	139
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10467681	10467686	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TCCTTC	TCCTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RP1L1	NM_178857	exon4	c.3922_3927del	p.1308_1309del	.	.	355	0	107	0	.	139
RPA1	6117	bcgsc.ca	37	17	1783964	1783964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RPA1	NM_002945	exon12	c.A1220G	p.E407G	.	.	98	4	63	0	.	651
RPAP1	26015	bcgsc.ca	37	15	41828820	41828820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RPAP1	NM_015540	exon3	c.T209C	p.V70A	.	.	116	5	37	0	.	153
RPAP3	79657	broad.mit.edu	37	12	48095308	48095308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RPAP3	NM_024604	exon3	c.A233G	p.E78G	.	.	1836	14	192	0	.	69
RPLP1	6176	bcgsc.ca	37	15	69747786	69747786	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RPLP1	NM_001003	exon4	c.A285G	p.E95E	.	.	75	4	38	0	.	90
RRM1	6240	bcgsc.ca	37	11	4154842	4154842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RRM1	NM_001033	exon17	c.A1955G	p.H652R	.	.	200	7	68	0	.	227
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45094517	45094517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RRP1B	NM_015056	exon5	c.C358A	p.L120M	.	.	175	55	60	0	.	91
RRP7B	91695	broad.mit.edu;bcgsc.ca	37	22	42972029	42972029	+	RNA	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	76	23	22	0	.	.
RTN3	10313	broad.mit.edu	37	11	63486209	63486209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RTN3	NM_001265589	exon3	c.T235C	p.S79P	.	.	113	5	36	0	.	91
RYR1	6261	bcgsc.ca	37	19	39063886	39063886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RYR1	NM_000540	exon96	c.A14068G	p.T4690A	.	.	99	6	31	0	.	100
RYR2	6262	hgsc.bcm.edu	37	1	237969493	237969494	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RYR2	NM_001035	exon99	c.14208_14209insT	p.N4736fs	.	.	891	0	162	0	.	158
RYR3	6263	bcgsc.ca	37	15	33954845	33954845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	RYR3	NM_001243996	exon35	c.G5114A	p.C1705Y	.	.	164	6	67	0	.	520
SAAL1	113174	bcgsc.ca	37	11	18102009	18102009	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SAAL1	NM_138421	exon12	c.A1362G	p.E454E	.	.	91	4	37	0	.	90
SACS	26278	bcgsc.ca	37	13	23904542	23904542	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SACS	NM_014363	exon10	c.T13473C	p.A4491A	.	.	100	4	87	0	.	298
SAMD15	161394	ucsc.edu;bcgsc.ca	37	14	77845345	77845345	+	Silent	SNP	C	C	T	rs61729322	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SAMD15	NM_001010860	exon1	c.C1584T	p.D528D	.	.	292	106	80	1	C|0.980;T|0.020	90
SCARA3	51435	bcgsc.ca	37	8	27516899	27516899	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SCARA3	NM_182826	exon5	c.C1212T	p.S404S	.	.	47	4	27	0	.	228
SCARB1	949	bcgsc.ca	37	12	125302188	125302188	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SCARB1	NM_005505	exon2	c.T192C	p.Y64Y	.	.	146	6	51	0	.	226
SCN1A	6323	bcgsc.ca	37	2	166848888	166848888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SCN1A	NM_001165963	exon26	c.A4897G	p.T1633A	.	.	164	5	66	0	.	147
SCTR	6344	hgsc.bcm.edu	37	2	120197740	120197741	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SCTR	NM_002980	exon13	c.1276_1277insC	p.S426fs	.	.	131	10	42	0	.	524
SCYL1	57410	hgsc.bcm.edu	37	11	65292730	65292732	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SCYL1	NM_020680	exon1	c.106_108del	p.36_36del	.	.	48	0	8	1	.	333
SDHAP2	727956	ucsc.edu	37	3	195395399	195395399	+	RNA	SNP	G	G	A	rs62287990	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	663	156	133	29	G|0.731;A|0.269	.
SDHAP2	727956	ucsc.edu	37	3	195395402	195395402	+	RNA	SNP	C	C	A	rs2688572	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	680	163	136	30	C|0.500;A|0.500	.
SEC22C	9117	bcgsc.ca	37	3	42594919	42594919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEC22C	NM_032970	exon7	c.A733G	p.S245G	.	.	65	4	32	0	.	90
SEC23A	10484	bcgsc.ca	37	14	39555084	39555084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEC23A	NM_006364	exon7	c.A710G	p.D237G	.	.	92	5	47	0	.	95
SEC24B	10427	bcgsc.ca	37	4	110460773	110460773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEC24B	NM_006323	exon24	c.A3749G	p.E1250G	.	.	191	6	89	0	.	137
SECISBP2	79048	bcgsc.ca	37	9	91961926	91961926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SECISBP2	NM_024077	exon11	c.A1565G	p.E522G	.	.	63	4	55	0	.	93
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83037733	83037733	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEMA3E	NM_012431	exon6	c.G621A	p.G207G	.	.	214	71	69	0	.	93
SEPN1	57190	broad.mit.edu	37	1	26127549	26127549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SEPN1	.	.	.	.	.	.	123	9	72	1	.	92
SERPINA7	6906	bcgsc.ca	37	X	105277644	105277644	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SERPINA7	NM_000354	exon5	c.A1095G	p.A365A	.	.	86	5	51	0	.	226
SERPINE2	5270	bcgsc.ca	37	2	224842292	224842292	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SERPINE2	NM_001136530	exon8	c.T1161C	p.P387P	.	.	312	7	91	0	.	290
SESN3	143686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94918494	94918494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SESN3	NM_144665	exon5	c.A688G	p.N230D	.	.	134	47	95	0	.	90
SESTD1	91404	bcgsc.ca	37	2	179977474	179977474	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SESTD1	NM_178123	exon17	c.T1938C	p.T646T	.	.	151	5	44	0	.	228
SETDB2	83852	bcgsc.ca	37	13	50034318	50034318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SETDB2	NM_001160308	exon2	c.T92C	p.V31A	.	.	95	5	59	0	.	91
SETX	23064	bcgsc.ca	37	9	135205446	135205446	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SETX	NM_015046	exon10	c.A1539G	p.K513K	.	.	85	5	68	0	.	93
SF3A1	10291	bcgsc.ca	37	22	30735228	30735228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SF3A1	NM_005877	exon10	c.A1388G	p.E463G	.	.	155	5	57	0	.	157
SFTPA1	653509	ucsc.edu	37	10	81372994	81372994	+	Silent	SNP	T	T	C	rs1059056	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001093770	exon5	c.T387C	p.F129F	.	.	626	146	126	1	T|0.994;C|0.006	.
SFXN3	81855	broad.mit.edu	37	10	102796962	102796962	+	Splice_Site	SNP	T	T	C	rs139685753	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SFXN3	NM_030971	exon8	c.733+2T>C	.	.	.	60	3	22	0	T|0.999;C|0.001	91
SH3D19	152503	bcgsc.ca	37	4	152049448	152049448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SH3D19	NM_001009555	exon19	c.G2032A	p.D678N	.	.	87	4	45	0	.	92
SHMT1	6470	bcgsc.ca	37	17	18233921	18233921	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SHMT1	NM_004169	exon10	c.T1119C	p.A373A	.	.	62	4	44	0	.	91
SHROOM2	357	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	9863964	9863964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SHROOM2	NM_001649	exon4	c.G2016T	p.Q672H	.	.	33	21	9	0	.	198
SHROOM3	57619	bcgsc.ca	37	4	77660944	77660944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SHROOM3	NM_020859	exon5	c.T1618C	p.S540P	.	.	89	5	35	0	.	93
SIGLEC16	400709	broad.mit.edu	37	19	50473221	50473221	+	RNA	SNP	T	T	C	rs440731	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	90	10	29	0	T|0.500;C|0.500	.
SLC13A5	284111	bcgsc.ca	37	17	6604381	6604381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC13A5	NM_001143838	exon6	c.A781G	p.M261V	.	.	51	4	30	0	.	90
SLC1A1	6505	bcgsc.ca	37	9	4585544	4585544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC1A1	NM_004170	exon12	c.A1561G	p.T521A	.	.	78	4	50	0	.	514
SLC25A5	292	bcgsc.ca	37	X	118603925	118603925	+	Missense_Mutation	SNP	G	G	A	rs200550329		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC25A5	NM_001152	exon2	c.G413A	p.R138H	.	.	145	15	42	0	.	131
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	40499574	40499574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC2A13	NM_052885	exon1	c.C37G	p.L13V	.	.	56	22	9	0	.	515
SLC2A3	6515	ucsc.edu	37	12	8082367	8082367	+	Silent	SNP	T	T	C	rs17847967	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC2A3	NM_006931	exon6	c.A774G	p.L258L	.	.	474	148	100	0	T|0.846;C|0.154	94
SLC35G5	83650	bcgsc.ca	37	8	11189604	11189604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_054028	exon1	c.G989T	p.C330F	.	.	141	19	78	0	.	.
SLC35G5	83650	ucsc.edu	37	8	11189535	11189535	+	Missense_Mutation	SNP	T	T	C	rs12681991	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_054028	exon1	c.T920C	p.L307P	.	.	141	96	66	19	T|0.557;C|0.443	.
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142231707	142231707	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC45A4	NM_001080431	exon2	c.C246T	p.G82G	.	.	157	39	27	0	.	70
SLC5A2	6524	bcgsc.ca	37	16	31499479	31499479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC5A2	NM_003041	exon8	c.C1006T	p.R336C	.	.	185	6	67	0	.	91
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	151	15	56	2	T|0.993;C|0.007	.
SLC6A14	11254	bcgsc.ca	37	X	115586533	115586533	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC6A14	NM_007231	exon12	c.A1515G	p.R505R	.	.	190	6	75	0	.	133
SLC6A8	6535	bcgsc.ca	37	X	152957469	152957469	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC6A8	NM_005629	exon4	c.A684G	p.P228P	.	.	319	9	108	0	.	131
SLC7A5P2	387254	ucsc.edu	37	16	21531133	21531133	+	RNA	SNP	C	C	G	rs518428		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	79	18	16	1	C|0.080;G|0.920	.
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	474998	474998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLC9A3	NM_004174	exon16	c.T2501A	p.M834K	.	.	68	20	23	0	.	90
SLX4	84464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	3651153	3651153	+	Silent	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SLX4	NM_032444	exon5	c.G990T	p.V330V	.	.	166	58	58	0	.	94
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112343665	112343665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMC3	NM_005445	exon12	c.G1036A	p.E346K	.	.	311	101	89	0	.	92
SMCHD1	23347	bcgsc.ca	37	18	2724942	2724942	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMCHD1	NM_015295	exon21	c.T2649C	p.C883C	.	.	59	4	34	0	.	46
SMCHD1	23347	bcgsc.ca	37	18	2724965	2724965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMCHD1	NM_015295	exon21	c.A2672G	p.K891R	.	.	76	5	39	0	.	46
SMCHD1	23347	bcgsc.ca	37	18	2796408	2796408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMCHD1	NM_015295	exon47	c.T5882C	p.M1961T	.	.	148	5	57	0	.	46
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156220788	156220788	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMG5	NM_015327	exon22	c.2829-1G>T	.	.	.	58	31	22	0	.	231
SMG6	23293	broad.mit.edu;bcgsc.ca	37	17	2202968	2202968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMG6	NM_017575	exon2	c.A1079G	p.N360S	.	.	273	7	111	0	.	228
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4163387	4163387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SMOX	NM_175839	exon5	c.G1261T	p.G421C	.	.	165	67	62	0	.	153
SORL1	6653	bcgsc.ca	37	11	121457020	121457020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SORL1	NM_003105	exon27	c.T3796C	p.S1266P	.	.	215	6	71	0	.	228
SPATA31C1	441452	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	90535228	90535228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001145124	exon4	c.G406A	p.G136S	.	.	348	187	123	0	.	.
SPATA31C2	645961	ucsc.edu	37	9	90747137	90747137	+	Missense_Mutation	SNP	C	C	G	rs78101790		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001166137	exon4	c.G815C	p.G272A	.	.	72	11	21	5	.	.
SPATS2L	26010	bcgsc.ca	37	2	201304031	201304031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SPATS2L	NM_001100423	exon7	c.A632G	p.D211G	.	.	202	6	86	0	.	48
SPG11	80208	broad.mit.edu;bcgsc.ca	37	15	44912532	44912532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SPG11	NM_025137	exon15	c.T2690C	p.I897T	.	.	252	8	59	0	.	95
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74383503	74383503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SPHK1	NM_182965	exon6	c.C1249G	p.P417A	.	.	187	56	51	0	.	1107
SPINK5	11005	bcgsc.ca	37	5	147466082	147466082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SPINK5	NM_001127699	exon5	c.T397C	p.C133R	.	.	93	5	52	0	.	138
SPRTN	83932	bcgsc.ca	37	1	231474239	231474239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_032018	exon1	c.A110G	p.E37G	.	.	181	14	64	5	.	.
SRGAP3	9901	hgsc.bcm.edu	37	3	9027370	9027370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SRGAP3	NM_014850	exon22	c.G3133A	p.A1045T	.	.	31	16	2	0	.	344
SRRM1	10250	broad.mit.edu	37	1	24993374	24993374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SRRM1	NM_005839	exon13	c.C1697A	p.P566H	.	.	154	8	83	1	.	93
SRRM1	10250	broad.mit.edu	37	1	24993386	24993386	+	Missense_Mutation	SNP	G	G	T	rs78787676	byfrequency;alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SRRM1	NM_005839	exon13	c.G1709T	p.R570L	.	.	145	9	80	1	G|0.999;A|0.001	93
SSFA2	6744	bcgsc.ca	37	2	182784094	182784094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SSFA2	NM_001130445	exon14	c.T3065C	p.L1022P	.	.	101	6	33	0	.	153
ST3GAL5	8869	bcgsc.ca	37	2	86075058	86075058	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ST3GAL5	NM_003896	exon4	c.G588A	p.V196V	.	.	152	6	54	0	.	90
ST8SIA6	338596	bcgsc.ca	37	10	17363254	17363254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ST8SIA6	NM_001004470	exon8	c.A820G	p.R274G	.	.	178	6	73	0	.	91
STAB1	23166	bcgsc.ca	37	3	52539359	52539359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STAB1	NM_015136	exon14	c.T1543C	p.S515P	.	.	155	6	46	0	.	139
STAB2	55576	broad.mit.edu;bcgsc.ca	37	12	104015882	104015882	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STAB2	NM_017564	exon5	c.T480C	p.C160C	.	.	210	7	79	0	.	104
STAMBPL1	57559	bcgsc.ca	37	10	90681125	90681125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STAMBPL1	NM_020799	exon9	c.C1127T	p.A376V	.	.	88	4	45	0	.	523
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854615	89854615	+	Silent	SNP	G	G	A	rs145786195	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STEAP2	NM_001244946	exon3	c.G219A	p.V73V	.	.	160	51	93	0	G|1.000;T|0.000	92
STK10	6793	bcgsc.ca	37	5	171509975	171509975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STK10	NM_005990	exon11	c.A1799G	p.Q600R	.	.	365	9	88	0	.	1022
STK32B	55351	broad.mit.edu	37	4	5468557	5468557	+	Missense_Mutation	SNP	C	C	A	rs146908689	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	STK32B	NM_018401	exon10	c.C1037A	p.P346Q	.	.	101	4	28	0	C|1.000;T|0.000	1002
SUCLG1	8802	bcgsc.ca	37	2	84676788	84676788	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SUCLG1	NM_003849	exon2	c.T186C	p.G62G	.	.	280	8	78	0	.	90
SUPT16H	11198	bcgsc.ca	37	14	21822663	21822663	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SUPT16H	NM_007192	exon23	c.C2697T	p.S899S	.	.	126	5	51	0	.	90
SUPT6H	6830	bcgsc.ca	37	17	27023946	27023946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SUPT6H	NM_003170	exon30	c.A4055G	p.Q1352R	.	.	235	7	72	0	.	93
SYCE2	256126	bcgsc.ca	37	19	13029125	13029125	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYCE2	NM_001105578	exon2	c.A42G	p.K14K	.	.	139	5	48	0	.	68
SYCP2	10388	hgsc.bcm.edu	37	20	58490593	58490593	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYCP2	NM_014258	exon8	c.526delA	p.M176X	.	.	957	22	158	3	.	525
SYCP3	50511	hgsc.bcm.edu	37	12	102122900	102122901	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYCP3	NM_153694	exon8	c.644_645insA	p.I215fs	.	.	947	0	165	0	.	90
SYK	6850	bcgsc.ca	37	9	93640015	93640015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYK	NM_003177	exon10	c.G1344A	p.M448I	.	.	137	6	69	0	.	1402
SYNE2	23224	bcgsc.ca	37	14	64595168	64595168	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYNE2	NM_182914	exon74	c.13918-2A>G	.	.	.	226	6	86	0	.	164
SYNE2	23224	bcgsc.ca	37	14	64644164	64644164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYNE2	NM_182914	exon96	c.T17519C	p.L5840P	.	.	346	8	86	0	.	164
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	40850324	40850324	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYT4	NM_020783	exon4	c.C1260T	p.H420H	.	.	172	10	79	0	.	132
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu	37	11	85437269	85437269	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYTL2	NM_206927	exon1	c.231delA	p.K77fs	.	.	995	9	175	0	.	137
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85436897	85436897	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	SYTL2	NM_206927	exon1	c.T603C	p.N201N	.	.	451	158	134	0	.	137
TACC2	10579	bcgsc.ca	37	10	123842343	123842343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TACC2	NM_206862	exon4	c.T328C	p.S110P	.	.	112	7	34	0	.	296
TACC2	10579	bcgsc.ca	37	10	123971198	123971200	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TACC2	NM_206862	exon9	c.7258_7260del	p.2420_2420del	.	.	101	33	29	0	.	296
TAS2R46	259292	hgsc.bcm.edu	37	12	11214495	11214510	+	Frame_Shift_Del	DEL	TAGTATCACCAGAACA	TAGTATCACCAGAACA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TAGTATCACCAGAACA	TAGTATCACCAGAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TAS2R46	NM_176887	exon1	c.384_399del	p.128_133del	.	.	187	0	116	0	.	1
TBK1	29110	bcgsc.ca	37	12	64889281	64889281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TBK1	NM_013254	exon14	c.A1540G	p.T514A	.	.	215	6	78	0	.	1459
TBX10	347853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	67399113	67399113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TBX10	NM_005995	exon8	c.C1121T	p.T374I	.	.	44	18	12	0	.	90
TCEAL3	85012	mdanderson.org	37	X	102864334	102864334	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCEAL3	NM_001006933	exon3	c.G342A	p.T114T	.	.	414	42	105	0	.	90
TCEAL5	340543	broad.mit.edu	37	X	102529084	102529084	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCEAL5	NM_001012979	exon3	c.A408G	p.Q136Q	.	.	568	13	143	0	.	175
TCF20	6942	bcgsc.ca	37	22	42607031	42607031	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCF20	NM_181492	exon1	c.G4281A	p.E1427E	.	.	135	5	54	0	.	95
TCHH	7062	bcgsc.ca	37	1	152083665	152083665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCHH	NM_007113	exon3	c.T2028G	p.H676Q	.	.	372	30	81	1	.	72
TCHH	7062	bcgsc.ca	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCHH	NM_007113	exon3	c.1873_1875del	p.625_625del	.	.	359	60	90	0	.	72
TCN1	6947	bcgsc.ca	37	11	59633889	59633889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCN1	NM_001062	exon1	c.C55T	p.P19S	.	.	178	6	80	0	.	92
TCP10	6953	ucsc.edu	37	6	167791530	167791530	+	Missense_Mutation	SNP	G	G	C	rs56018421	bycluster	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCP10	NM_004610	exon4	c.C330G	p.D110E	.	.	540	161	118	18	C|1.000;|0.000	89
TCP10	6953	ucsc.edu	37	6	167791549	167791549	+	Missense_Mutation	SNP	T	T	G	rs55819058	bycluster	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TCP10	NM_004610	exon4	c.A311C	p.H104P	.	.	523	143	116	12	G|1.000;|0.000	89
TEKT1	83659	bcgsc.ca	37	17	6703456	6703456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TEKT1	NM_053285	exon8	c.A1147G	p.I383V	.	.	83	4	35	0	.	92
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20872028	20872028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TEP1	NM_007110	exon6	c.G1048T	p.D350Y	.	.	56	26	22	0	.	95
TESK2	10420	bcgsc.ca	37	1	45887475	45887475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TESK2	NM_007170	exon3	c.A266G	p.N89S	.	.	139	6	80	0	.	624
TGFBR1	7046	bcgsc.ca	37	9	101891344	101891344	+	Missense_Mutation	SNP	A	A	G	rs200860457		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TGFBR1	NM_001130916	exon2	c.A305G	p.N102S	.	.	121	5	71	0	.	954
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	89177754	89177754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TGIF2LX	NM_138960	exon2	c.G670A	p.A224T	.	.	275	216	78	0	.	92
THAP11	57215	ucsc.edu	37	16	67877308	67877308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	THAP11	NM_020457	exon1	c.A851G	p.H284R	.	.	38	5	19	0	.	90
TIFAB	497189	bcgsc.ca	37	5	134785179	134785179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TIFAB	NM_001099221	exon2	c.A451G	p.I151V	.	.	171	6	64	0	.	22
TIGD7	91151	hgsc.bcm.edu;broad.mit.edu	37	16	3350520	3350536	+	Frame_Shift_Del	DEL	ATTACACTTTTAAGTGA	ATTACACTTTTAAGTGA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	ATTACACTTTTAAGTGA	ATTACACTTTTAAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TIGD7	NM_033208	exon2	c.79_95del	p.27_32del	.	.	260	75	64	0	.	90
TIMD4	91937	hgsc.bcm.edu	37	5	156378745	156378747	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TIMD4	NM_138379	exon3	c.455_457del	p.152_153del	.	.	3072	18	197	1	.	92
TIRAP	114609	bcgsc.ca	37	11	126162876	126162876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TIRAP	NM_148910	exon5	c.T572C	p.L191P	.	.	79	4	36	0	.	523
TLK2	11011	broad.mit.edu	37	17	60637441	60637441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TLK2	NM_006852	exon10	c.G785A	p.R262Q	.	.	1313	11	176	0	.	464
TLR10	81793	bcgsc.ca	37	4	38776311	38776311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TLR10	NM_001017388	exon2	c.A901G	p.T301A	.	.	226	6	90	0	.	522
TMED6	146456	bcgsc.ca	37	16	69377358	69377358	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMED6	NM_144676	exon4	c.T675C	p.R225R	.	.	148	5	71	0	.	91
TMED6	146456	bcgsc.ca	37	16	69381823	69381823	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMED6	NM_144676	exon3	c.T357C	p.C119C	.	.	175	6	82	0	.	91
TMEM101	84336	bcgsc.ca	37	17	42089357	42089357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMEM101	NM_032376	exon4	c.A713G	p.K238R	.	.	131	5	46	0	.	91
TMEM102	284114	bcgsc.ca	37	17	7339711	7339711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMEM102	NM_178518	exon3	c.A413G	p.E138G	.	.	56	4	37	0	.	90
TMEM132B	114795	bcgsc.ca	37	12	126139020	126139020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMEM132B	NM_052907	exon9	c.T3001C	p.S1001P	.	.	77	4	34	0	.	185
TMEM242	729515	bcgsc.ca	37	6	157743770	157743770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_018452	exon2	c.G156T	p.L52F	.	.	169	6	62	0	.	.
TMEM63B	55362	bcgsc.ca	37	6	44115224	44115224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMEM63B	NM_018426	exon12	c.G974T	p.R325L	.	.	229	7	76	0	.	92
TMEM63B	55362	bcgsc.ca	37	6	44120382	44120382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMEM63B	NM_018426	exon20	c.T1889C	p.V630A	.	.	83	5	40	0	.	92
TMEM95	339168	bcgsc.ca	37	17	7258959	7258959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMEM95	NM_198154	exon2	c.T224C	p.M75T	.	.	85	4	49	0	.	90
TMTC4	84899	bcgsc.ca	37	13	101315240	101315240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TMTC4	NM_032813	exon5	c.T530C	p.V177A	.	.	66	4	33	0	.	155
TNIK	23043	bcgsc.ca	37	3	170895145	170895145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TNIK	NM_001161562	exon8	c.A664G	p.T222A	.	.	110	5	36	0	.	550
TNKS	8658	bcgsc.ca	37	8	9623806	9623806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TNKS	NM_003747	exon25	c.T3611C	p.I1204T	.	.	91	4	53	0	.	660
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	72144245	72144245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TNPO1	NM_002270	exon2	c.G49T	p.E17X	.	.	99	21	43	0	.	228
TNS1	7145	bcgsc.ca	37	2	218712242	218712242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TNS1	NM_022648	exon17	c.A2623G	p.R875G	.	.	135	5	35	0	.	156
TPR	7175	broad.mit.edu	37	1	186320564	186320564	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TPR	NM_003292	exon20	c.G2508A	p.R836R	.	.	806	8	148	0	.	228
TPTE2P6	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	C	G	rs3874227	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	373	73	116	0	C|0.917;G|0.083	.
TRABD2A	129293	hgsc.bcm.edu	37	2	85059187	85059201	+	In_Frame_Del	DEL	GGGTCGTCCAGCAGG	GGGTCGTCCAGCAGG	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	GGGTCGTCCAGCAGG	GGGTCGTCCAGCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001080824	exon4	c.913_927del	p.305_309del	.	.	67	0	24	0	.	.
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	118006517	118006517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRAM1L1	NM_152402	exon1	c.C33T	p.P11P	.	.	63	45	40	0	.	90
TRAPPC11	60684	bcgsc.ca	37	4	184614267	184614267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_021942	exon20	c.A2204G	p.H735R	.	.	130	5	62	0	.	.
TRHDE	29953	bcgsc.ca	37	12	72969040	72969040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRHDE	NM_013381	exon11	c.C2002T	p.H668Y	.	.	212	6	87	1	.	93
TRIM33	51592	bcgsc.ca	37	1	114967368	114967368	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRIM33	NM_033020	exon10	c.T1705C	p.L569L	.	.	104	5	48	0	.	1351
TRIM33	51592	hgsc.bcm.edu	37	1	114968116	114968118	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRIM33	NM_033020	exon9	c.1648_1650del	p.550_550del	.	.	1261	21	179	3	.	1351
TRIM42	287015	bcgsc.ca	37	3	140406696	140406696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRIM42	NM_152616	exon3	c.A1172G	p.E391G	.	.	302	8	90	0	.	227
TRIM77	390231	ucsc.edu	37	11	89443808	89443808	+	Silent	SNP	A	A	C	rs11018745	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001146162	exon1	c.A342C	p.L114L	.	.	48	19	25	9	A|0.705;C|0.295	.
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72966074	72966074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPA1	NM_007332	exon13	c.C1558G	p.H520D	.	.	151	24	49	0	.	230
TRPC4	7223	bcgsc.ca	37	13	38229410	38229410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPC4	NM_003306	exon7	c.A1699G	p.T567A	.	.	82	4	55	0	.	159
TRPM1	4308	bcgsc.ca	37	15	31294519	31294519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPM1	NM_001252020	exon27	c.T4435C	p.F1479L	.	.	234	6	66	0	.	94
TRPM1	4308	broad.mit.edu	37	15	31342669	31342669	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPM1	NM_001252020	exon11	c.A1431G	p.K477K	.	.	894	14	169	0	.	94
TRPM3	80036	bcgsc.ca	37	9	73235179	73235179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPM3	NM_001007471	exon15	c.T1906C	p.F636L	.	.	243	6	100	0	.	521
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77400791	77400791	+	Missense_Mutation	SNP	A	A	G	rs142068228		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPM6	NM_017662	exon21	c.T2918C	p.M973T	.	.	99	58	48	0	A|1.000;G|0.000	335
TRPV6	55503	broad.mit.edu	37	7	142571408	142571408	+	Silent	SNP	G	G	T	rs181131940	alternate_allele	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TRPV6	NM_018646	exon13	c.C1581A	p.P527P	.	.	180	6	68	0	G|0.999;A|0.000	92
TSPAN33	340348	bcgsc.ca	37	7	128802260	128802260	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TSPAN33	NM_178562	exon3	c.G186A	p.V62V	.	.	165	5	40	0	.	91
TTC39B	158219	bcgsc.ca	37	9	15307138	15307138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TTC39B	NM_001168340	exon1	c.A184G	p.S62G	.	.	62	4	49	0	.	187
TTLL2	83887	bcgsc.ca	37	6	167754858	167754858	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TTLL2	NM_031949	exon3	c.A1470G	p.G490G	.	.	156	5	53	0	.	92
TTN	7273	bcgsc.ca	37	2	179396250	179396250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TTN	NM_001267550	exon358	c.T105092C	p.V35031A	.	.	90	4	40	0	.	636
TTN	7273	bcgsc.ca	37	2	179458694	179458694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TTN	NM_001267550	exon297	c.G58426A	p.V19476I	.	.	191	6	80	0	.	636
TTN	7273	bcgsc.ca	37	2	179586650	179586650	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TTN	NM_001267550	exon78	c.A22740G	p.G7580G	.	.	218	7	100	0	.	636
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179396555	179396555	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TTN	NM_001267550	exon358	c.A104787G	p.E34929E	.	.	270	7	82	0	.	636
TUBA3E	112714	ucsc.edu	37	2	130949553	130949553	+	Missense_Mutation	SNP	A	A	G	rs1052422	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TUBA3E	NM_207312	exon5	c.T1204C	p.W402R	.	.	194	64	59	18	A|0.657;G|0.343	69
TUBA3E	112714	ucsc.edu	37	2	130952038	130952038	+	Missense_Mutation	SNP	G	G	A	rs13000721	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TUBA3E	NM_207312	exon4	c.C377T	p.A126V	.	.	336	80	77	16	G|0.676;A|0.324	69
TUBA3E	112714	ucsc.edu	37	2	130952718	130952718	+	Silent	SNP	G	G	A	rs3853852	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TUBA3E	NM_207312	exon3	c.C309T	p.Y103Y	.	.	450	126	107	27	G|0.637;A|0.363	69
TUBA3E	112714	ucsc.edu	37	2	130952725	130952725	+	Missense_Mutation	SNP	C	C	T	rs74378236	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TUBA3E	NM_207312	exon3	c.G302A	p.S101N	.	.	426	120	106	24	C|0.500;T|0.500	69
TUBD1	51174	bcgsc.ca	37	17	57944074	57944074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TUBD1	NM_016261	exon7	c.T971C	p.L324P	.	.	194	7	76	1	.	227
TUBGCP3	10426	bcgsc.ca	37	13	113174335	113174335	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TUBGCP3	NM_006322	exon15	c.A1746G	p.K582K	.	.	92	4	47	0	.	90
TVP23C	201158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15406424	15406424	+	Missense_Mutation	SNP	C	C	A	rs17850827		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_145301	exon6	c.G585T	p.R195S	.	.	64	41	29	0	C|1.000;|0.000	.
TXNDC16	57544	bcgsc.ca	37	14	52981627	52981627	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TXNDC16	NM_020784	exon8	c.C576T	p.T192T	.	.	147	5	54	0	.	22
TYW1	55253	ucsc.edu	37	7	66660247	66660247	+	Silent	SNP	T	T	C	rs71563186		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	TYW1	NM_018264	exon15	c.T1900C	p.L634L	.	.	227	44	62	8	T|0.500;C|0.500	91
UBE3B	89910	ucsc.edu;bcgsc.ca	37	12	109939174	109939174	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UBE3B	NM_183415	exon13	c.1119-2A>G	.	.	.	44	5	29	0	.	660
UBR4	23352	bcgsc.ca	37	1	19501470	19501470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UBR4	NM_020765	exon21	c.A2831G	p.D944G	.	.	90	4	59	0	.	612
UGT1A5	54579	bcgsc.ca	37	2	234676922	234676922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UGT1A5	NM_019078	exon4	c.A1144G	p.S382G	.	.	273	7	85	0	.	3
UGT1A5	54579	ucsc.edu	37	2	234622412	234622412	+	Missense_Mutation	SNP	G	G	C	rs3892170	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UGT1A5	NM_019078	exon1	c.G775C	p.G259R	.	.	283	65	72	8	G|0.714;C|0.286	3
UGT2B4	7363	bcgsc.ca	37	4	70361409	70361409	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UGT2B4	NM_021139	exon1	c.A171G	p.A57A	.	.	86	5	71	0	.	92
UGT3A1	133688	broad.mit.edu	37	5	35965691	35965691	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UGT3A1	NM_152404	exon4	c.C640T	p.Q214X	.	.	257	6	92	0	.	92
UNC5D	137970	bcgsc.ca	37	8	35608104	35608104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UNC5D	NM_080872	exon13	c.T1940C	p.V647A	.	.	246	7	106	0	.	96
UNC79	57578	broad.mit.edu;bcgsc.ca	37	14	94139731	94139731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_020818	exon42	c.T6257C	p.V2086A	.	.	383	10	105	0	.	.
UPRT	139596	bcgsc.ca	37	X	74494173	74494173	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UPRT	NM_145052	exon1	c.G84A	p.Q28Q	.	.	66	4	36	0	.	130
URM1	81605	bcgsc.ca	37	9	131151981	131151981	+	Missense_Mutation	SNP	G	G	A	rs150966477	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	URM1	NM_030914	exon5	c.G274A	p.V92I	.	.	48	4	32	0	G|0.997;A|0.003	90
USH2A	7399	bcgsc.ca	37	1	216420497	216420497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USH2A	NM_007123	exon13	c.T2239C	p.C747R	.	.	126	5	55	0	.	115
USH2A	7399	bcgsc.ca	37	1	216420554	216420554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USH2A	NM_007123	exon13	c.C2182T	p.H728Y	.	.	92	4	43	0	.	115
USP26	83844	bcgsc.ca	37	X	132161319	132161319	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP26	NM_031907	exon1	c.A930G	p.L310L	.	.	97	4	54	0	.	661
USP32	84669	bcgsc.ca	37	17	58300785	58300785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP32	NM_032582	exon14	c.A1595G	p.Q532R	.	.	200	6	67	0	.	704
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76802273	76802273	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP36	NM_025090	exon15	c.C2181T	p.P727P	.	.	141	69	34	0	.	659
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11927068	11927068	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP47	NM_017944	exon7	c.T738C	p.Y246Y	.	.	230	89	86	0	.	660
USP6	9098	ucsc.edu;bcgsc.ca	37	17	5036224	5036224	+	Missense_Mutation	SNP	C	C	G	rs72830922		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	USP6	NM_004505	exon5	c.C215G	p.T72R	.	.	161	19	69	1	.	662
UTP14A	10813	bcgsc.ca	37	X	129042086	129042086	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UTP14A	NM_006649	exon3	c.T153C	p.S51S	.	.	228	7	71	0	.	132
UTP14C	9724	bcgsc.ca	37	13	52604025	52604025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UTP14C	NM_021645	exon2	c.A1085G	p.E362G	.	.	177	6	108	0	.	138
UTRN	7402	bcgsc.ca	37	6	145157541	145157541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UTRN	NM_007124	exon70	c.A9929G	p.E3310G	.	.	206	6	68	0	.	95
UTY	7404	bcgsc.ca	37	Y	15435513	15435513	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	UTY	NM_001258249	exon21	c.T3198C	p.R1066R	.	.	241	6	179	0	.	136
VARS	7407	bcgsc.ca	37	6	31752060	31752060	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VARS	NM_006295	exon13	c.A1602G	p.A534A	.	.	208	7	73	0	.	93
VEZF1	7716	bcgsc.ca	37	17	56056604	56056604	+	Silent	SNP	T	T	C	rs138088904	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VEZF1	NM_007146	exon5	c.A1047G	p.Q349Q	.	.	297	11	58	0	T|0.999;C|0.001	136
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17277863	17277863	+	Silent	SNP	A	A	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VIM	NM_003380	exon8	c.A1248T	p.P416P	.	.	391	151	114	0	.	291
VTN	7448	broad.mit.edu;bcgsc.ca	37	17	26694414	26694414	+	Silent	SNP	G	G	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	VTN	NM_000638	exon8	c.C1413G	p.G471G	.	.	95	38	29	2	.	227
VWA5B1	127731	bcgsc.ca	37	1	20645944	20645944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001039500	exon7	c.A911G	p.K304R	.	.	94	4	52	0	.	.
WASH2P	375260	broad.mit.edu	37	2	114355194	114355194	+	RNA	SNP	A	A	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	75	8	28	3	.	.
WDR7	23335	bcgsc.ca	37	18	54629732	54629732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	WDR7	NM_015285	exon26	c.T4136C	p.L1379P	.	.	82	4	58	0	.	93
WHSC1L1	54904	bcgsc.ca	37	8	38194940	38194940	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	WHSC1L1	NM_017778	exon4	c.G793C	p.G265R	.	.	93	5	42	0	.	658
WHSC1L1	54904	hgsc.bcm.edu	37	8	38205092	38205092	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	WHSC1L1	NM_017778	exon2	c.598delA	p.S200fs	.	.	869	13	188	1	.	658
WNT7A	7476	bcgsc.ca	37	3	13860913	13860913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	WNT7A	NM_004625	exon4	c.A578G	p.E193G	.	.	63	4	29	0	.	948
WNT7B	7477	bcgsc.ca	37	22	46318774	46318774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	WNT7B	NM_058238	exon4	c.A1012G	p.T338A	.	.	154	6	48	1	.	522
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167891765	167891765	+	Missense_Mutation	SNP	G	G	A	rs139653620		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	WWC1,NS,carcinoma,0	WWC1	NM_001161662	exon21	c.G2966A	p.R989H	.	.	194	53	39	0	G|1.000;A|0.000	157
XPNPEP1	7511	bcgsc.ca	37	10	111624968	111624968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	XPNPEP1	NM_020383	exon21	c.A1975G	p.T659A	.	.	139	6	54	0	.	94
XRCC6P5	0	bcgsc.ca	37	X	99141913	99141913	+	RNA	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	54	33	29	0	.	.
YRDC	79693	bcgsc.ca	37	1	38270098	38270098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	YRDC	NM_024640	exon4	c.C643T	p.P215S	.	.	58	4	41	0	.	90
YTHDF3	253943	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	64098980	64098980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	770	176	122	0	.	.
ZDHHC19	131540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195935366	195935366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZDHHC19	NM_001039617	exon4	c.G474A	p.M158I	.	.	269	91	81	0	.	93
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77767241	77767241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFHX4	NM_024721	exon10	c.G8084T	p.R2695L	.	.	175	36	36	0	.	98
ZFP106	64397	bcgsc.ca	37	15	42736441	42736441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFP106	NM_022473	exon6	c.C3311T	p.A1104V	.	.	384	9	98	0	.	515
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu	37	15	42742957	42742957	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFP106	NM_022473	exon2	c.1444delT	p.S482fs	.	.	676	13	155	0	.	515
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50769740	50769740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFP64	NM_018197	exon6	c.C991T	p.R331W	.	.	244	101	78	0	.	155
ZFYVE20	64145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15115343	15115343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFYVE20	NM_022340	exon14	c.G2301T	p.E767D	.	.	143	56	50	0	.	92
ZFYVE26	23503	bcgsc.ca	37	14	68249872	68249872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZFYVE26	NM_015346	exon21	c.A3997G	p.S1333G	.	.	146	5	51	0	.	162
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124267557	124267557	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZHX1	NM_007222	exon3	c.A630G	p.K210K	.	.	608	126	109	0	.	91
ZMIZ2	83637	bcgsc.ca	37	7	44802909	44802909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZMIZ2	NM_031449	exon13	c.A1757G	p.E586G	.	.	122	6	53	0	.	137
ZMYM1	79830	bcgsc.ca	37	1	35575918	35575918	+	Silent	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZMYM1	NM_024772	exon7	c.T831C	p.S277S	.	.	212	6	89	0	.	90
ZNF143	7702	bcgsc.ca	37	11	9534102	9534102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF143	NM_003442	exon13	c.A1483G	p.S495G	.	.	80	4	44	0	.	90
ZNF17	7565	bcgsc.ca	37	19	57932650	57932650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF17	NM_006959	exon3	c.T1790C	p.L597P	.	.	207	6	77	0	.	90
ZNF233	353355	bcgsc.ca	37	19	44778549	44778549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF233	NM_001207005	exon5	c.T1736C	p.L579P	.	.	236	6	83	0	.	92
ZNF274	10782	bcgsc.ca	37	19	58698398	58698398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF274	.	.	.	.	.	.	125	5	40	0	.	91
ZNF28	7576	bcgsc.ca	37	19	53303460	53303460	+	Silent	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF28	NM_006969	exon4	c.T1638C	p.T546T	.	.	148	5	89	1	.	91
ZNF292	23036	bcgsc.ca	37	6	87971161	87971161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF292	NM_015021	exon8	c.A7814G	p.K2605R	.	.	149	5	78	0	.	72
ZNF304	57343	bcgsc.ca	37	19	57868391	57868391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF304	NM_020657	exon3	c.A1154G	p.H385R	.	.	135	5	66	0	.	91
ZNF317	57693	bcgsc.ca	37	19	9267348	9267348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF317	NM_020933	exon3	c.A86G	p.D29G	.	.	124	6	43	0	.	90
ZNF414	84330	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	8576572	8576572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF414	NM_032370	exon5	c.G803T	p.R268L	.	.	34	19	11	0	.	90
ZNF441	126068	bcgsc.ca	37	19	11891437	11891437	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF441	NM_152355	exon4	c.C798T	p.Y266Y	.	.	121	6	57	0	.	69
ZNF461	92283	bcgsc.ca	37	19	37130868	37130868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_153257	exon6	c.A379G	p.N127D	.	.	175	6	63	0	.	.
ZNF462	58499	bcgsc.ca	37	9	109688586	109688586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF462	NM_021224	exon3	c.A2393G	p.E798G	.	.	159	5	80	0	.	95
ZNF485	220992	bcgsc.ca	37	10	44112786	44112786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF485	NM_145312	exon5	c.A1295G	p.H432R	.	.	80	4	44	0	.	90
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31038933	31038933	+	Missense_Mutation	SNP	C	C	T	rs140147461		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF536	NM_014717	exon4	c.C2407T	p.R803W	.	.	118	47	37	0	C|1.000;T|0.000	144
ZNF540	163255	bcgsc.ca	37	19	38103771	38103771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF540	NM_152606	exon5	c.G1590T	p.K530N	.	.	78	4	41	0	.	153
ZNF585B	92285	bcgsc.ca	37	19	37697972	37697972	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF585B	NM_152279	exon2	c.G42A	p.L14L	.	.	119	5	43	0	.	91
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58489830	58489830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF606	NM_025027	exon7	c.C2218T	p.H740Y	.	.	269	11	100	0	.	92
ZNF609	23060	bcgsc.ca	37	15	64966405	64966405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF609	NM_015042	exon4	c.A1352G	p.N451S	.	.	84	4	34	0	.	92
ZNF644	84146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	91405648	91405648	+	Silent	SNP	C	C	T	rs78456645	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF644	NM_201269	exon3	c.G1263A	p.E421E	.	.	170	76	90	0	C|0.997;T|0.003	155
ZNF655	79027	bcgsc.ca	37	7	99160082	99160082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF655	NM_024061	exon4	c.T314C	p.V105A	.	.	276	8	83	0	.	91
ZNF658	26149	hgsc.bcm.edu	37	9	40773225	40773226	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF658	NM_033160	exon5	c.2050_2051insG	p.K684fs	.	.	444	67	148	0	.	45
ZNF658	26149	hgsc.bcm.edu	37	9	40773228	40773228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF658	NM_033160	exon5	c.2047delA	p.R683fs	.	.	448	67	146	0	.	45
ZNF676	163223	bcgsc.ca	37	19	22363650	22363650	+	Missense_Mutation	SNP	G	G	A	rs79444294	byfrequency	TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF676	NM_001001411	exon3	c.C869T	p.S290F	.	.	76	8	33	0	G|0.767;A|0.233	90
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22363957	22363958	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF676	NM_001001411	exon3	c.561_562del	p.187_188del	.	.	110	30	61	0	.	90
ZNF678	339500	bcgsc.ca	37	1	227843132	227843132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF678	NM_178549	exon4	c.A1346G	p.Q449R	.	.	70	4	49	0	.	91
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151260007	151260007	+	Silent	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF687	NM_020832	exon2	c.C1240T	p.L414L	.	.	71	26	19	0	.	92
ZNF714	148206	bcgsc.ca	37	19	21300164	21300164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF714	NM_182515	exon5	c.G694A	p.E232K	.	.	85	4	32	0	.	67
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37309866	37309869	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AAGA	AAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF790	NM_206894	exon5	c.1377_1380del	p.459_460del	.	.	174	51	68	0	.	92
ZNF808	388558	bcgsc.ca	37	19	53058276	53058276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001039886	exon5	c.G2107A	p.G703R	.	.	169	5	87	0	.	.
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T	rs201682072		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	NM_001144989	exon3	c.C1212A	p.D404E	.	.	592	70	139	0	.	.
ZNF91	7644	bcgsc.ca	37	19	23542615	23542615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	ZNF91	NM_003430	exon4	c.G3166A	p.G1056S	.	.	156	5	54	0	.	90
ZNF676	163223	hgsc.bcm.edu;bcgsc.ca	37	19	22363952	22363953	+	Missense_Mutation	DNP	AC	AC	TA	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.S189I	.	.	.	.	.	.	.	
ZNF880	400713	ucsc.edu	37	19	52888049	52888050	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.Q406R	.	.	.	.	.	.	.	
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.V137L	.	.	.	.	.	.	.	
FRG1B	284802	bcgsc.ca	37	20	29628299	29628300	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.S101D	.	.	.	.	.	.	.	
UGT2B28	54490	ucsc.edu;bcgsc.ca	37	4	70160342	70160343	+	Missense_Mutation	DNP	TG	TG	CC	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	p.C469P	.	.	.	.	.	.	.	
CTD-2089O24.1	0	bcgsc.ca	37	5	110284399	110284400	+	RNA	DNP	CT	CT	TC	novel		TCGA-DD-A116-01A-11D-A12Z-10	TCGA-DD-A116-10A-01D-A12Z-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	62bed857-df38-4647-9db4-b95bca893cfb	3e8275bd-f6e8-43cc-956f-83a6c36c0b09	.	.	.	.	.	.	.	.	.	.	.	.	.	
