Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA2	20	hgsc.bcm.edu	37	9	139907265	139907266	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ABCA2	NM_212533	exon31	c.5070_5071insC	p.P1690fs	.	.	100	14	95	0	.	90
ABCC12	94160	bcgsc.ca	37	16	48117886	48117886	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ABCC12	NM_033226	exon28	c.G3927A	p.L1309L	.	.	198	6	172	0	.	93
ABCD4	5826	bcgsc.ca	37	14	74759320	74759320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ABCD4	NM_005050	exon10	c.T962C	p.I321T	.	.	79	4	86	0	.	292
ACACA	31	bcgsc.ca	37	17	35453940	35453940	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACACA	NM_198834	exon54	c.A6882G	p.G2294G	.	.	84	9	121	6	.	154
ACACB	32	bcgsc.ca	37	12	109613753	109613753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACACB	NM_001093	exon7	c.A1234G	p.T412A	.	.	163	5	171	0	.	98
ACAD9	28976	bcgsc.ca	37	3	128621412	128621412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACAD9	NM_014049	exon9	c.T899C	p.L300P	.	.	123	5	119	0	.	92
ACCS	84680	hgsc.bcm.edu;bcgsc.ca	37	11	44089261	44089262	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACCS	NM_032592	exon2	c.84_85insG	p.H28fs	.	.	143	16	165	0	.	155
ACTR3B	57180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	152549222	152549222	+	Silent	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ACTR3B	NM_020445	exon10	c.C963G	p.L321L	.	.	225	62	217	0	.	514
ADAM7	8756	bcgsc.ca	37	8	24300007	24300007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ADAM7	NM_003817	exon2	c.A74G	p.E25G	.	.	85	5	116	0	.	230
ADAMDEC1	27299	bcgsc.ca	37	8	24254865	24254865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ADAMDEC1	NM_014479	exon6	c.T523C	p.S175P	.	.	82	4	115	0	.	228
ADAMTS12	81792	bcgsc.ca	37	5	33624420	33624420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ADAMTS12	NM_030955	exon14	c.A2059G	p.T687A	.	.	367	10	318	0	.	232
ADAMTS18	170692	bcgsc.ca	37	16	77369798	77369798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ADAMTS18	NM_199355	exon12	c.T1714C	p.C572R	.	.	58	4	62	0	.	1036
ADCY6	112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49165650	49165650	+	Missense_Mutation	SNP	C	C	T	rs143958339	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ADCY6	NM_015270	exon18	c.G2894A	p.R965H	.	.	158	35	144	1	C|0.999;T|0.001	90
ADRBK1	156	bcgsc.ca	37	11	67048965	67048965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ADRBK1	NM_001619	exon9	c.A683G	p.K228R	.	.	75	4	72	0	.	521
AIM1L	55057	ucsc.edu	37	1	26650668	26650668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AIM1L	NM_001039775	exon18	c.A4712G	p.Y1571C	.	.	31	4	59	0	.	91
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	151670985	151670985	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AKAP12	NM_005100	exon4	c.A1459T	p.K487X	.	.	50	29	60	0	.	293
AKAP13	11214	bcgsc.ca	37	15	86225440	86225440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AKAP13	NM_006738	exon15	c.A5165G	p.E1722G	.	.	79	4	88	0	.	258
AKAP6	9472	bcgsc.ca	37	14	33293768	33293768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AKAP6	NM_004274	exon13	c.A6749G	p.D2250G	.	.	93	5	105	0	.	733
ALB	213	hgsc.bcm.edu	37	4	74285229	74285286	+	Frame_Shift_Del	DEL	TTGTTGAGCTCGTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTAT	TTGTTGAGCTCGTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTAT	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TTGTTGAGCTCGTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTAT	TTGTTGAGCTCGTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ALB	NM_000477	exon13	c.1658_1715del	p.553_572del	.	.	42	0	48	0	.	96
ALKBH2	121642	bcgsc.ca	37	12	109530353	109530353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ALKBH2	NM_001205180	exon2	c.A239G	p.E80G	.	.	148	5	132	0	.	227
AMPD1	270	bcgsc.ca	37	1	115220631	115220631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AMPD1	NM_000036	exon9	c.T1223C	p.F408S	.	.	79	4	102	1	.	293
ANK2	287	bcgsc.ca	37	4	114274635	114274635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ANK2	NM_001148	exon38	c.A4861G	p.I1621V	.	.	154	5	131	0	.	583
ANKRD26	22852	bcgsc.ca	37	10	27368039	27368039	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ANKRD26	NM_014915	exon7	c.A792G	p.E264E	.	.	112	5	111	1	.	138
ANKRD50	57182	broad.mit.edu	37	4	125592485	125592485	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ANKRD50	NM_020337	exon4	c.A1947G	p.R649R	.	.	177	6	194	0	.	90
ANXA7	310	bcgsc.ca	37	10	75143101	75143101	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ANXA7	NM_004034	exon10	c.A816G	p.G272G	.	.	97	4	139	0	.	516
AP1G2	8906	bcgsc.ca	37	14	24029514	24029514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AP1G2	NM_003917	exon20	c.T2107C	p.F703L	.	.	82	5	64	0	.	45
AP3M1	26985	bcgsc.ca	37	10	75883602	75883602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AP3M1	NM_012095	exon9	c.T1223C	p.V408A	.	.	191	6	316	2	.	90
AP4S1	11154	bcgsc.ca	37	14	31549838	31549838	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AP4S1	NM_007077	exon5	c.T354C	p.S118S	.	.	115	5	108	0	.	226
APOB	338	bcgsc.ca	37	2	21236271	21236271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	APOB	NM_000384	exon25	c.T3977C	p.V1326A	.	.	88	5	100	0	.	175
ARHGAP20	57569	broad.mit.edu;bcgsc.ca	37	11	110451343	110451343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP20	NM_020809	exon16	c.A2327G	p.N776S	.	.	470	10	528	1	.	230
ARHGAP4	393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153185069	153185069	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP4	NM_001164741	exon6	c.C753A	p.L251L	.	.	201	29	140	0	.	227
ARHGAP44	9912	bcgsc.ca	37	17	12877404	12877404	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP44	NM_014859	exon18	c.1542-2A>G	.	.	.	166	7	182	0	.	90
ARHGAP6	395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11206890	11206890	+	Silent	SNP	C	C	T	rs151308614	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGAP6	NM_006125	exon4	c.G1035A	p.T345T	.	.	680	124	571	0	C|0.999;T|0.001	227
ARHGEF18	23370	bcgsc.ca	37	19	7516047	7516047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGEF18	NM_001130955	exon6	c.T1186C	p.F396L	.	.	127	6	121	0	.	228
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7516109	7516109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGEF18	NM_001130955	exon6	c.C1248T	p.T416T	.	.	130	25	107	0	.	228
ARHGEF38	54848	bcgsc.ca	37	4	106510463	106510463	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARHGEF38	NM_001242729	exon2	c.G255A	p.E85E	.	.	124	6	122	0	.	292
ARMCX5	64860	bcgsc.ca	37	X	101857070	101857070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARMCX5	NM_022838	exon3	c.A1G	p.M1V	.	.	136	5	104	0	.	131
ARNTL2	56938	bcgsc.ca	37	12	27554285	27554285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARNTL2	NM_020183	exon11	c.A1256G	p.K419R	.	.	87	4	108	0	.	92
ARSD	414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2835844	2835844	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ARSD	NM_001669	exon6	c.863+1G>A	.	.	.	143	37	110	0	.	130
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150883617	150883617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ASB10	NM_001142459	exon2	c.G446A	p.R149H	.	.	59	10	58	0	.	226
ASCC3	10973	bcgsc.ca	37	6	101214514	101214514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ASCC3	NM_006828	exon10	c.A1664G	p.E555G	.	.	182	6	194	0	.	96
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108218075	108218075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATM	NM_000051	exon59	c.T8654A	p.L2885H	.	.	257	125	247	0	.	3419
ATP1B4	23439	bcgsc.ca	37	X	119505030	119505030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATP1B4	NM_001142447	exon4	c.A527G	p.Q176R	.	.	194	6	169	0	.	131
ATP5A1	498	broad.mit.edu	37	18	43668184	43668184	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATP5A1	NM_004046	exon6	c.A690G	p.K230K	.	.	103	4	156	0	.	90
ATP6V1A	523	bcgsc.ca	37	3	113507724	113507724	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATP6V1A	NM_001690	exon7	c.879+2T>C	.	.	.	80	4	77	0	.	93
ATP9B	374868	bcgsc.ca	37	18	77089165	77089165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATP9B	NM_198531	exon16	c.A1798G	p.S600G	.	.	86	7	110	1	.	93
ATR	545	bcgsc.ca	37	3	142212118	142212118	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATR	NM_001184	exon35	c.A5934G	p.K1978K	.	.	149	5	177	0	.	1139
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105278897	105278897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ATXN7L1	NM_020725	exon7	c.G1105A	p.A369T	.	.	350	125	288	1	.	90
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	69364274	69364274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	AUTS2	NM_001127231	exon2	c.A312C	p.K104N	.	.	168	30	167	1	.	92
B3GALNT1	8706	bcgsc.ca	37	3	160803962	160803962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	B3GALNT1	NM_001038628	exon8	c.T581C	p.L194P	.	.	98	4	127	0	.	91
B9D1	27077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19261177	19261177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	B9D1	NM_015681	exon3	c.T220A	p.F74I	.	.	60	24	83	0	.	68
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52440295	52440295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	BAP1,uveal_tract,malignant_melanoma,0	BAP1	NM_004656	exon9	c.C757T	p.Q253X	.	.	110	65	156	1	.	1032
BBS4	585	bcgsc.ca	37	15	73023969	73023969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BBS4	NM_033028	exon12	c.T938C	p.V313A	.	.	229	6	236	1	.	90
BEND5	79656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	49242456	49242456	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BEND5	NM_024603	exon1	c.G48A	p.L16L	.	.	61	22	40	0	.	91
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102005369	102005369	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BHLHB9	NM_001142530	exon2	c.C1446A	p.I482I	.	.	566	231	452	1	.	132
BHMT2	23743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78376532	78376532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BHMT2	NM_017614	exon4	c.C281T	p.A94V	.	.	249	18	209	0	.	91
BICC1	80114	bcgsc.ca	37	10	60548144	60548144	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BICC1	NM_001080512	exon6	c.A561G	p.G187G	.	.	79	4	126	0	.	72
BMP3	651	bcgsc.ca	37	4	81967242	81967242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BMP3	NM_001201	exon2	c.T667C	p.S223P	.	.	61	5	98	1	.	518
BNIP2	663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59972472	59972472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BNIP2	NM_004330	exon3	c.T449C	p.I150T	.	.	49	28	56	0	.	228
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49688366	49688366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BSN	NM_003458	exon4	c.A1840G	p.T614A	.	.	53	15	95	0	.	97
BTRC	8945	bcgsc.ca	37	10	103291024	103291024	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BTRC	NM_033637	exon7	c.T774C	p.P258P	.	.	229	6	221	0	.	659
BZRAP1	9256	bcgsc.ca	37	17	56382923	56382923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	BZRAP1	NM_004758	exon28	c.G5339A	p.S1780N	.	.	62	4	54	0	.	229
C10orf129	142827	bcgsc.ca	37	10	96954303	96954303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C10orf129	NM_207321	exon2	c.T61C	p.C21R	.	.	132	5	109	0	.	90
C12orf40	283461	bcgsc.ca	37	12	40040655	40040655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C12orf40	NM_001031748	exon5	c.A349G	p.R117G	.	.	79	4	91	0	.	96
C14orf2	9556	bcgsc.ca	37	14	104379021	104379021	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C14orf2	NM_001127393	exon5	c.T210C	p.P70P	.	.	95	4	90	0	.	90
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60945061	60945061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C14orf39	NM_174978	exon5	c.C280G	p.Q94E	.	.	252	63	311	0	.	94
C17orf97	400566	bcgsc.ca	37	17	263673	263673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C17orf97	NM_001013672	exon2	c.C1039A	p.P347T	.	.	100	7	131	4	.	91
C1orf173	127254	ucsc.edu;bcgsc.ca	37	1	75114955	75114955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1orf173	NM_001002912	exon2	c.G68A	p.G23E	.	.	39	4	73	0	.	94
C1orf63	57035	bcgsc.ca	37	1	25573249	25573249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1orf63	NM_020317	exon2	c.G206A	p.R69H	.	.	60	4	76	0	.	91
C1S	716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7169973	7169973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C1S	NM_201442	exon3	c.A200C	p.Y67S	.	.	97	23	92	1	.	91
C22orf34	348645	bcgsc.ca;mdanderson.org	37	22	50017062	50017062	+	RNA	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	90	16	76	2	.	.
C6orf170	221322	bcgsc.ca	37	6	121577277	121577277	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	C6orf170	NM_152730	exon16	c.T1888C	p.L630L	.	.	136	5	168	0	.	92
CACNA1C	775	bcgsc.ca	37	12	2794921	2794921	+	Missense_Mutation	SNP	G	G	A	rs71458011		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CACNA1C	NM_199460	exon47	c.G5842A	p.E1948K	.	.	111	6	107	2	G|0.500;A|0.500	34
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2788717	2788717	+	Silent	SNP	G	G	A	rs200638007		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	Q6YL47_HUMAN,NS,carcinoma,0	CACNA1C	NM_199460	exon44	c.G5343A	p.A1781A	.	.	74	19	51	0	G|0.999;A|0.001	34
CACNA2D1	781	bcgsc.ca	37	7	81689819	81689819	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CACNA2D1	NM_000722	exon10	c.A804G	p.T268T	.	.	57	4	69	0	.	96
CACNG8	59283	bcgsc.ca	37	19	54483154	54483154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CACNG8	NM_031895	exon3	c.T401C	p.L134P	.	.	140	7	91	2	.	90
CADPS	8618	bcgsc.ca	37	3	62518677	62518677	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CADPS	NM_003716	exon13	c.A2160G	p.G720G	.	.	65	5	108	0	.	281
CAMKK1	84254	bcgsc.ca	37	17	3783694	3783694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CAMKK1	NM_172207	exon10	c.T856C	p.S286P	.	.	78	5	67	1	.	334
CAMSAP2	23271	bcgsc.ca	37	1	200818975	200818975	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_203459	exon11	c.A3078G	p.G1026G	.	.	187	6	184	0	.	.
CAMTA1	23261	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	7724363	7724363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CAMTA1	NM_015215	exon9	c.T1756G	p.F586V	.	.	53	19	69	0	.	520
CATSPERD	257062	bcgsc.ca	37	19	5749179	5749179	+	Silent	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_152784	exon11	c.A972T	p.P324P	.	.	72	4	79	0	.	.
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57734093	57734093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCDC135	NM_032269	exon4	c.C415A	p.P139T	.	.	104	17	119	0	.	90
CCDC54	84692	bcgsc.ca	37	3	107096511	107096511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCDC54	NM_032600	exon1	c.A77G	p.Q26R	.	.	141	5	155	0	.	90
CCDC83	220047	bcgsc.ca	37	11	85622374	85622374	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCDC83	NM_173556	exon8	c.A723G	p.E241E	.	.	209	6	201	0	.	91
CCDC88A	55704	bcgsc.ca	37	2	55582874	55582874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCDC88A	NM_018084	exon8	c.T641C	p.L214P	.	.	85	4	83	0	.	94
CCPG1	9236	bcgsc.ca	37	15	55669268	55669268	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CCPG1	NM_020739	exon5	c.A333G	p.P111P	.	.	223	7	267	1	.	91
CCT6P3	643180	broad.mit.edu	37	7	64529085	64529085	+	RNA	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NR_033416	exon6	c.783-2A>G	.	.	.	94	15	61	0	.	.
CD163L1	283316	hgsc.bcm.edu;bcgsc.ca	37	12	7556293	7556293	+	Missense_Mutation	SNP	C	C	T	rs151328196	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD163L1	NM_174941	exon6	c.G1246A	p.V416I	.	.	131	9	156	0	C|0.999;T|0.001	100
CD1D	912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158151319	158151319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD1D	NM_001766	exon3	c.G136A	p.G46S	.	.	104	17	66	0	.	92
CD300LG	146894	bcgsc.ca	37	17	41931402	41931402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD300LG	NM_145273	exon4	c.T709C	p.S237P	.	.	93	5	82	2	.	90
CD47	961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107799113	107799113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CD47	NM_198793	exon2	c.T125G	p.F42C	.	.	152	40	181	0	.	91
CDC16	8881	bcgsc.ca	37	13	115028481	115028481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDC16	NM_003903	exon16	c.T1504C	p.F502L	.	.	86	4	210	1	.	226
CDC25B	994	bcgsc.ca	37	20	3781901	3781901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDC25B	NM_021873	exon8	c.T706C	p.C236R	.	.	67	4	74	1	.	849
CDC42BPG	55561	bcgsc.ca	37	11	64606985	64606985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDC42BPG	NM_017525	exon6	c.T640C	p.F214L	.	.	77	4	70	0	.	528
CDC45	8318	broad.mit.edu;bcgsc.ca	37	22	19471437	19471437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDC45	NM_003504	exon5	c.A395G	p.D132G	.	.	126	7	105	0	.	227
CDH26	60437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58564047	58564047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDH26	NM_177980	exon9	c.T1112A	p.L371H	.	.	108	17	72	0	.	93
CDK14	5218	bcgsc.ca	37	7	90356008	90356008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDK14	NM_012395	exon2	c.A197G	p.E66G	.	.	163	6	150	0	.	970
CDK8	1024	bcgsc.ca	37	13	26975669	26975669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDK8	NM_001260	exon12	c.A1177G	p.S393G	.	.	48	4	91	1	.	1023
CDKL5	6792	broad.mit.edu;bcgsc.ca	37	X	18631367	18631367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDKL5	NM_003159	exon15	c.T2248A	p.S750T	.	.	1112	21	897	0	.	838
CDO1	1036	bcgsc.ca	37	5	115142129	115142129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CDO1	NM_001801	exon4	c.T490C	p.C164R	.	.	156	5	161	0	.	154
CEACAM16	388551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45206800	45206800	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CEACAM16	NM_001039213	exon3	c.C219A	p.G73G	.	.	142	20	98	1	.	23
CELF1	10658	bcgsc.ca	37	11	47504410	47504410	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CELF1	NM_006560	exon8	c.526-2A>G	.	.	.	275	7	264	0	.	92
CHCHD6	84303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126445955	126445955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CHCHD6	NM_032343	exon2	c.C122T	p.P41L	.	.	205	51	222	0	.	90
CHD3	1107	bcgsc.ca	37	17	7807930	7807930	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CHD3	NM_001005271	exon25	c.A4242G	p.E1414E	.	.	90	4	95	0	.	228
CKMT2	1160	bcgsc.ca	37	5	80562012	80562012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CKMT2	NM_001825	exon11	c.A1195G	p.K399E	.	.	125	5	132	0	.	90
CLASP2	23122	bcgsc.ca	37	3	33543160	33543160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CLASP2	NM_015097	exon38	c.A4445G	p.Q1482R	.	.	75	5	72	0	.	93
CLUAP1	23059	bcgsc.ca	37	16	3558463	3558463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CLUAP1	NM_015041	exon4	c.T394C	p.S132P	.	.	59	4	78	0	.	137
COASY	80347	bcgsc.ca	37	17	40716551	40716551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	COASY	NM_001042532	exon5	c.A1090G	p.S364G	.	.	90	6	77	0	.	115
COL5A2	1290	bcgsc.ca	37	2	189898944	189898944	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	COL5A2	NM_000393	exon55	c.4354-2A>G	.	.	.	138	5	124	0	.	92
COL7A1	1294	bcgsc.ca	37	3	48606258	48606258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	COL7A1	NM_000094	exon103	c.T7717C	p.S2573P	.	.	74	4	129	1	.	160
COMMD10	51397	bcgsc.ca	37	5	115469845	115469845	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	COMMD10	NM_016144	exon5	c.A480G	p.L160L	.	.	201	6	137	0	.	91
COX20	116228	broad.mit.edu	37	1	245005290	245005290	+	Silent	SNP	C	C	T	rs140032239	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_198076	exon2	c.C87T	p.C29C	.	.	748	7	628	0	C|0.999;T|0.001	.
CPD	1362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28772898	28772898	+	Silent	SNP	G	G	T	rs187666987	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CPD	NM_001304	exon12	c.G2733T	p.A911A	.	.	166	52	247	1	G|0.999;A|0.000	92
CPSF3L	54973	bcgsc.ca	37	1	1256407	1256407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CPSF3L	NM_001256456	exon4	c.A113G	p.D38G	.	.	146	6	198	2	.	90
CREBBP	1387	bcgsc.ca	37	16	3789651	3789651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CREBBP	NM_004380	exon25	c.A4208G	p.D1403G	.	.	64	4	64	0	.	1807
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2836265	2836265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CSMD1	NM_033225	exon55	c.A8435G	p.N2812S	.	.	39	4	91	0	.	86
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100078295	100078295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CSTF2	NM_001325	exon4	c.G322T	p.A108S	.	.	163	25	123	0	.	131
CYBASC3	220002	bcgsc.ca	37	11	61118512	61118512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CYBASC3	NM_001161454	exon7	c.T707C	p.L236P	.	.	82	4	82	0	.	90
CYP2J2	1573	bcgsc.ca	37	1	60375529	60375529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	CYP2J2	NM_000775	exon5	c.A788G	p.D263G	.	.	129	6	156	0	.	91
DAAM1	23002	bcgsc.ca	37	14	59835502	59835502	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DAAM1	NM_014992	exon25	c.A3162G	p.K1054K	.	.	118	5	184	0	.	227
DAGLB	221955	bcgsc.ca	37	7	6465698	6465698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DAGLB	NM_139179	exon7	c.T977C	p.L326P	.	.	110	6	89	0	.	70
DCAF8L1	139425	broad.mit.edu	37	X	27998998	27998998	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DCAF8L1	NM_001017930	exon1	c.C454T	p.R152X	.	.	632	25	433	1	.	112
DDX20	11218	bcgsc.ca	37	1	112303184	112303184	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DDX20	NM_007204	exon4	c.A654G	p.E218E	.	.	164	5	202	0	.	227
DENND5B-AS1	100874249	bcgsc.ca	37	12	31769016	31769016	+	RNA	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	219	69	247	0	.	.
DEPTOR	64798	bcgsc.ca	37	8	121013795	121013795	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DEPTOR	NM_022783	exon5	c.T636C	p.N212N	.	.	58	5	61	0	.	227
DKC1	1736	bcgsc.ca	37	X	154004593	154004593	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DKC1	NM_001363	exon14	c.A1470G	p.G490G	.	.	169	6	151	0	.	227
DLGAP5	9787	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55618447	55618447	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DLGAP5	NM_014750	exon17	c.C2334A	p.I778I	.	.	166	53	218	1	.	92
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124329720	124329720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DMBT1	NM_007329	exon3	c.C134T	p.A45V	.	.	175	47	173	0	.	494
DMXL1	1657	bcgsc.ca	37	5	118582902	118582902	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DMXL1	NM_005509	exon43	c.A9072G	p.K3024K	.	.	144	5	126	0	.	92
DNAH1	25981	bcgsc.ca	37	3	52433780	52433780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNAH1	NM_015512	exon77	c.A12661G	p.T4221A	.	.	76	4	102	0	.	67
DNAH6	1768	bcgsc.ca	37	2	84832661	84832661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNAH6	NM_001370	exon20	c.T3119C	p.L1040P	.	.	215	6	254	0	.	69
DNAJB4	11080	bcgsc.ca	37	1	78471004	78471004	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNAJB4	NM_007034	exon1	c.A210G	p.E70E	.	.	60	4	94	0	.	226
DNASE2	1777	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	12991796	12991796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNASE2	NM_001375	exon2	c.A257G	p.N86S	.	.	82	16	91	0	.	90
DNASE2	1777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12987092	12987092	+	Silent	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNASE2	NM_001375	exon6	c.T795G	p.S265S	.	.	135	21	121	0	.	90
DNM1	1759	bcgsc.ca	37	9	131004521	131004521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DNM1	.	.	.	.	.	.	120	5	142	0	.	228
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117788710	117788710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOCK11	NM_144658	exon43	c.C4841T	p.T1614I	.	.	267	99	240	0	.	93
DOCK3	1795	bcgsc.ca	37	3	51317556	51317556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOCK3	NM_004947	exon27	c.T2843C	p.L948P	.	.	336	8	363	0	.	22
DOCK4	9732	broad.mit.edu	37	7	111575620	111575620	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOCK4	NM_014705	exon12	c.T1041C	p.R347R	.	.	465	10	402	0	.	26
DOCK5	80005	bcgsc.ca	37	8	25265584	25265584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOCK5	NM_024940	exon49	c.A5179G	p.N1727D	.	.	92	4	169	0	.	71
DOPEY2	9980	bcgsc.ca	37	21	37584393	37584393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DOPEY2	NM_005128	exon7	c.T902C	p.L301P	.	.	72	5	65	0	.	91
DPY19L4	286148	broad.mit.edu	37	8	95789954	95789954	+	Silent	SNP	C	C	T	rs199585103		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DPY19L4	NM_181787	exon14	c.C1515T	p.P505P	.	.	455	6	354	1	C|0.999;T|0.001	92
DSCAM	1826	bcgsc.ca	37	21	41711086	41711086	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DSCAM	NM_001271534	exon7	c.G1467A	p.S489S	.	.	130	5	121	0	.	101
DSCR3	10311	bcgsc.ca	37	21	38605695	38605695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DSCR3	NM_006052	exon4	c.A400G	p.T134A	.	.	70	4	57	0	.	90
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56417839	56417846	+	Frame_Shift_Del	DEL	TCAGTGAC	TCAGTGAC	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TCAGTGAC	TCAGTGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DST	NM_015548	exon42	c.7875_7882del	p.2625_2628del	.	.	129	11	102	0	.	523
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	89743032	89743032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DUSP6	NM_001946	exon3	c.G1145T	p.X382L	.	.	80	20	83	0	.	846
DYNC2H1	79659	bcgsc.ca	37	11	103029745	103029745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	DYNC2H1	NM_001377	exon28	c.A4367G	p.K1456R	.	.	196	8	228	0	.	68
EFCAB14	9813	bcgsc.ca	37	1	47155274	47155274	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_014774	exon6	c.T780C	p.S260S	.	.	163	6	236	0	.	.
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	44091923	44091923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EFHC2	NM_025184	exon10	c.G1424A	p.G475E	.	.	154	66	98	0	.	135
EIF2B5	8893	bcgsc.ca	37	3	183855584	183855584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EIF2B5	NM_003907	exon3	c.A497G	p.E166G	.	.	141	5	235	0	.	95
EML3	256364	bcgsc.ca	37	11	62378426	62378426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EML3	NM_153265	exon4	c.A491G	p.E164G	.	.	76	5	75	0	.	91
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71508293	71508293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ENAM	NM_031889	exon9	c.C1150G	p.P384A	.	.	305	53	239	0	.	93
ENTPD1	953	bcgsc.ca	37	10	97599526	97599526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ENTPD1	NM_001164178	exon3	c.A259G	p.T87A	.	.	298	7	316	0	.	93
EPB41	2035	bcgsc.ca	37	1	29391622	29391622	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EPB41	NM_001166005	exon16	c.A2136G	p.S712S	.	.	97	5	121	2	.	91
EPCAM	4072	bcgsc.ca	37	2	47600600	47600600	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EPCAM	NM_002354	exon2	c.77-2A>G	.	.	.	54	4	42	1	.	91
EPGN	255324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75174267	75174267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EPGN	NM_001270993	exon1	c.C17T	p.P6L	.	.	343	43	391	0	.	90
EPHB3	2049	bcgsc.ca	37	3	184290422	184290422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EPHB3	NM_004443	exon3	c.T314C	p.V105A	.	.	97	5	98	0	.	1455
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56487230	56487230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ERBB3	NM_001982	exon12	c.A1376G	p.N459S	.	.	94	24	142	0	.	1403
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65303132	65303132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	EYS	NM_001142800	exon25	c.G3755T	p.R1252I	.	.	320	49	258	0	.	660
F8	2157	bcgsc.ca	37	X	154176097	154176097	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	F8	NM_000132	exon13	c.A1989G	p.A663A	.	.	221	6	180	0	.	182
FAF1	11124	bcgsc.ca	37	1	51253753	51253753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAF1	NM_007051	exon4	c.A286G	p.R96G	.	.	145	5	278	1	.	652
FAH	2184	bcgsc.ca	37	15	80473408	80473408	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAH	NM_000137	exon13	c.T1087C	p.L363L	.	.	128	5	127	0	.	90
FAM101B	359845	broad.mit.edu	37	17	295704	295704	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	182	6	219	0	.	.
FAM120B	84498	bcgsc.ca	37	6	170657385	170657385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAM120B	NM_032448	exon5	c.T2164C	p.C722R	.	.	88	4	144	0	.	91
FAM131A	131408	bcgsc.ca	37	3	184060625	184060625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAM131A	NM_144635	exon5	c.A602G	p.D201G	.	.	80	4	91	0	.	153
FAM160B2	64760	bcgsc.ca	37	8	21960049	21960049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_022749	exon16	c.A2003G	p.D668G	.	.	59	4	102	3	.	.
FAM227B	196951	bcgsc.ca	37	15	49860500	49860500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_152647	exon9	c.A689G	p.E230G	.	.	91	4	90	0	.	.
FAM45B	55855	broad.mit.edu	37	X	129629131	129629131	+	RNA	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAM45B	.	.	.	.	.	.	218	6	196	0	.	63
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150932949	150932949	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAT2	NM_001447	exon6	c.3946-1G>C	.	.	.	99	17	85	0	.	96
FAT4	79633	bcgsc.ca	37	4	126242049	126242049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FAT4	NM_024582	exon1	c.A4483G	p.T1495A	.	.	140	5	116	1	.	108
FBLN7	129804	broad.mit.edu;mdanderson.org	37	2	112942913	112942913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FBLN7	NM_153214	exon7	c.C944A	p.P315Q	.	.	63	10	64	0	.	69
FBXO33	254170	bcgsc.ca	37	14	39871646	39871646	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FBXO33	NM_203301	exon2	c.A669G	p.T223T	.	.	108	5	122	0	.	658
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	34261446	34261446	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FHOD3	NM_025135	exon12	c.1358delA	p.E453fs	.	.	253	139	366	0	.	139
FKTN	2218	bcgsc.ca	37	9	108382224	108382224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FKTN	NM_006731	exon9	c.A1054G	p.S352G	.	.	76	4	74	0	.	155
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281525	152281525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FLG	NM_002016	exon3	c.C5837T	p.A1946V	.	.	734	151	683	0	.	106
FLT1	2321	bcgsc.ca	37	13	28896425	28896425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FLT1	NM_002019	exon22	c.G3025T	p.G1009C	.	.	55	4	89	0	.	1406
FLT4	2324	bcgsc.ca	37	5	180047611	180047611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FLT4	NM_182925	exon16	c.A2404G	p.R802G	.	.	128	7	127	1	.	1490
FMN1	342184	bcgsc.ca	37	15	33194110	33194110	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FMN1	NM_001103184	exon10	c.2838+2T>C	.	.	.	104	5	81	0	.	23
FMN2	56776	bcgsc.ca	37	1	240370247	240370247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FMN2	NM_020066	exon5	c.A2135G	p.E712G	.	.	139	5	124	0	.	145
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216248174	216248174	+	Missense_Mutation	SNP	C	C	T	rs140153061		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FN1	NM_212482	exon31	c.G4927A	p.D1643N	.	.	224	41	254	1	C|0.999;T|0.000	584
FRMD6	122786	bcgsc.ca	37	14	52178300	52178300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FRMD6	NM_001267046	exon8	c.A766G	p.I256V	.	.	81	4	113	0	.	524
FTO	79068	bcgsc.ca	37	16	53859999	53859999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	FTO	NM_001080432	exon3	c.T347C	p.V116A	.	.	64	5	87	0	.	68
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151806785	151806785	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GABRQ	NM_018558	exon1	c.C129T	p.V43V	.	.	254	48	188	0	.	133
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51773444	51773444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GALNT6	NM_007210	exon3	c.C122T	p.P41L	.	.	96	23	95	1	.	92
GAS2L3	283431	bcgsc.ca	37	12	101005875	101005875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GAS2L3	NM_174942	exon6	c.A401G	p.D134G	.	.	294	8	266	1	.	227
GH1	2688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61995228	61995228	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GH1	NM_000515	exon4	c.G348A	p.V116V	.	.	99	28	111	0	.	522
GIPC2	54810	bcgsc.ca	37	1	78585158	78585158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GIPC2	NM_017655	exon4	c.A689G	p.K230R	.	.	79	6	111	0	.	91
GLIPR1L1	256710	bcgsc.ca	37	12	75763929	75763929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GLIPR1L1	NM_152779	exon5	c.A675G	p.L225L	.	.	90	4	90	0	.	90
GLT1D1	144423	bcgsc.ca	37	12	129442160	129442160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GLT1D1	NM_144669	exon7	c.T611C	p.V204A	.	.	52	4	66	0	.	90
GNA15	2769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3162793	3162793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GNA15	NM_002068	exon7	c.C901T	p.P301S	.	.	42	11	54	0	.	229
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	.	.	213	35	163	0	C|1.000	4767
GNB5	10681	bcgsc.ca	37	15	52476746	52476746	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GNB5	NM_016194	exon3	c.126+2T>C	.	.	.	84	4	80	0	.	227
GPR123	84435	bcgsc.ca	37	10	134942164	134942164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR123	NM_001083909	exon7	c.T832C	p.S278P	.	.	84	7	80	2	.	90
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368126	72368126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR142	NM_181790	exon4	c.C776T	p.A259V	.	.	61	13	76	0	.	93
GPR156	165829	broad.mit.edu	37	3	119892287	119892287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR156	NM_153002	exon8	c.A964G	p.N322D	.	.	670	8	650	0	.	92
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246895	97246895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR63	NM_030784	exon2	c.G713T	p.G238V	.	.	71	21	149	0	.	92
GPR85	54329	bcgsc.ca	37	7	112723930	112723930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPR85	NM_001146265	exon3	c.A847G	p.I283V	.	.	80	4	88	0	.	91
GPRASP1	9737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101911927	101911927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GPRASP1	NM_001099411	exon3	c.C3086T	p.T1029M	.	.	243	49	193	1	.	131
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122538727	122538727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GRIA3	NM_000828	exon10	c.A1462G	p.K488E	.	.	529	102	461	0	.	134
GRIK3	2899	bcgsc.ca	37	1	37271801	37271801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GRIK3	NM_000831	exon14	c.T2218C	p.S740P	.	.	140	5	203	0	.	158
GRK5	2869	bcgsc.ca	37	10	121214567	121214567	+	Silent	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	GRK5	NM_005308	exon16	c.C1761A	p.T587T	.	.	139	6	144	0	.	547
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73944105	73944105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	GTF2IRD1,NS,carcinoma,0	GTF2IRD1	NM_001199207	exon9	c.C1228T	p.R410W	.	.	121	27	91	0	.	94
HDGFL1	154150	bcgsc.ca	37	6	22570046	22570046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HDGFL1	NM_138574	exon1	c.A242G	p.E81G	.	.	73	7	43	1	.	90
HEATR4	399671	bcgsc.ca	37	14	73988987	73988987	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HEATR4	NM_203309	exon2	c.C870A	p.P290P	.	.	85	4	112	0	.	91
HELZ	9931	bcgsc.ca	37	17	65144713	65144713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HELZ	NM_014877	exon20	c.A2593G	p.N865D	.	.	70	4	92	0	.	92
HGF	3082	bcgsc.ca	37	7	81388112	81388112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HGF	NM_000601	exon3	c.T263C	p.V88A	.	.	156	5	143	0	.	516
HIST1H4B	8366	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027241	26027241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIST1H4B	NM_003544	exon1	c.G240T	p.K80N	.	.	198	30	168	1	.	70
HIST1H4E	8367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26204899	26204899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIST1H4E	NM_003545	exon1	c.G27C	p.K9N	.	.	159	35	139	0	.	69
HIVEP1	3096	bcgsc.ca	37	6	12161746	12161746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HIVEP1	NM_002114	exon8	c.A6562G	p.N2188D	.	.	122	5	98	0	.	139
HS3ST1	9957	bcgsc.ca	37	4	11401480	11401480	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HS3ST1	NM_005114	exon2	c.T150C	p.S50S	.	.	92	6	44	0	.	91
HSDL2	84263	bcgsc.ca	37	9	115181189	115181189	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HSDL2	NM_032303	exon6	c.A549G	p.A183A	.	.	157	7	125	0	.	90
HSPA12A	259217	bcgsc.ca	37	10	118439178	118439178	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	HSPA12A	NM_025015	exon10	c.A1122G	p.K374K	.	.	155	5	168	0	.	206
IBTK	25998	bcgsc.ca	37	6	82906066	82906066	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IBTK	NM_015525	exon22	c.A3123G	p.R1041R	.	.	57	4	101	0	.	92
IFI6	2537	bcgsc.ca	37	1	27995026	27995026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IFI6	NM_022873	exon3	c.A115G	p.S39G	.	.	60	4	52	0	.	91
IFLTD1	160492	broad.mit.edu	37	12	25705815	25705815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IFLTD1	NM_001145728	exon2	c.A79G	p.K27E	.	.	586	9	579	1	.	92
IGF1R	3480	bcgsc.ca	37	15	99465478	99465478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IGF1R	NM_000875	exon11	c.C2303A	p.P768Q	.	.	103	5	83	0	.	1490
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159912756	159912756	+	Missense_Mutation	SNP	C	C	A	rs113355407	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	IGSF9,NS,carcinoma,0	IGSF9	NM_001135050	exon3	c.G244T	p.V82L	.	.	97	20	93	0	C|0.500;T|0.500	156
IL12RB2	3595	bcgsc.ca	37	1	67796350	67796350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL12RB2	NM_001559	exon7	c.T815C	p.V272A	.	.	61	4	71	1	.	92
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117895250	117895250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL13RA1	NM_001560	exon6	c.T826A	p.Y276N	.	.	402	82	325	1	.	554
IL6ST	3572	bcgsc.ca	37	5	55259220	55259220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL6ST	NM_175767	exon7	c.A773G	p.N258S	.	.	159	6	120	0	.	290
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	55272094	55272094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IL6ST	NM_175767	exon3	c.C13T	p.Q5X	.	.	336	89	299	0	.	290
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86408465	86408465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IMMT	NM_006839	exon2	c.C76G	p.P26A	.	.	84	18	90	0	.	91
IQGAP1	8826	broad.mit.edu;bcgsc.ca	37	15	91020963	91020963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IQGAP1	NM_003870	exon26	c.T3171C	p.S1057S	.	.	93	5	94	0	.	950
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279675	53279675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IQSEC2	NM_001111125	exon5	c.G2083A	p.D695N	.	.	214	49	175	0	.	178
IRAK1BP1	134728	bcgsc.ca	37	6	79577556	79577556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	IRAK1BP1	NM_001010844	exon1	c.T263C	p.V88A	.	.	67	5	71	0	.	90
ITIH3	3699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52835121	52835121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ITIH3	NM_002217	exon11	c.C1342T	p.R448W	.	.	60	26	79	0	.	93
JAM2	58494	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	27078305	27078305	+	Missense_Mutation	SNP	A	A	G	rs201705901		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	JAM2	NM_021219	exon7	c.A712G	p.S238G	.	.	257	62	252	4	.	90
JMJD1C	221037	ucsc.edu;bcgsc.ca	37	10	64967085	64967085	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	JMJD1C	NM_032776	exon10	c.C4344T	p.C1448C	.	.	34	4	45	0	.	275
KALRN	8997	bcgsc.ca	37	3	124181459	124181459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KALRN	NM_003947	exon25	c.A4004G	p.E1335G	.	.	90	4	90	0	.	738
KAT6A	7994	ucsc.edu;bcgsc.ca	37	8	41806816	41806816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001099412	exon11	c.A1664G	p.Q555R	.	.	34	4	72	0	.	.
KBTBD8	84541	bcgsc.ca	37	3	67058640	67058640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KBTBD8	NM_032505	exon4	c.A1637G	p.E546G	.	.	46	4	87	0	.	587
KCNAB1	7881	bcgsc.ca	37	3	155861131	155861131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KCNAB1	NM_003471	exon1	c.A164G	p.K55R	.	.	52	4	73	0	.	94
KHNYN	23351	bcgsc.ca	37	14	24905682	24905682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KHNYN	NM_015299	exon7	c.A1774G	p.K592E	.	.	73	5	64	0	.	93
KIAA0100	9703	bcgsc.ca	37	17	26961558	26961558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA0100	NM_014680	exon16	c.A3047G	p.K1016R	.	.	80	4	109	0	.	93
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75136704	75136704	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA0317	NM_001039479	exon14	c.T1734C	p.A578A	.	.	52	5	72	0	.	525
KIAA1109	84162	bcgsc.ca	37	4	123265640	123265640	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA1109	NM_015312	exon72	c.A12657G	p.G4219G	.	.	98	7	108	0	.	80
KIAA1522	57648	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	33236078	33236078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIAA1522	NM_020888	exon6	c.C1298T	p.S433F	.	.	28	5	35	0	.	90
KIAA1551	55196	broad.mit.edu	37	12	32135427	32135427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_018169	exon4	c.G1538A	p.R513Q	.	.	56	3	57	0	.	.
KIF18A	81930	bcgsc.ca	37	11	28112981	28112981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIF18A	NM_031217	exon4	c.T563C	p.V188A	.	.	77	4	75	0	.	92
KIF20B	9585	bcgsc.ca	37	10	91522511	91522511	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIF20B	NM_016195	exon29	c.A4788G	p.A1596A	.	.	72	4	91	1	.	93
KIF2A	3796	bcgsc.ca	37	5	61677048	61677048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KIF2A	NM_001098511	exon20	c.A2117G	p.E706G	.	.	225	6	174	0	.	228
KLF11	8462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10188154	10188154	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KLF11	NM_003597	exon3	c.C690T	p.S230S	.	.	62	20	58	0	.	228
KLHL21	9903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6661869	6661869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KLHL21	NM_014851	exon1	c.A1009T	p.I337F	.	.	82	25	101	1	.	514
KLRC4-KLRK1	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10541374	10541374	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001199805	exon7	c.C36T	p.S12S	.	.	46	8	69	0	.	.
KRT1	3848	hgsc.bcm.edu	37	12	53073845	53073846	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KRT1	NM_006121	exon1	c.288_289insG	p.G96fs	.	.	584	36	540	0	.	92
KRT23	25984	broad.mit.edu	37	17	39092832	39092832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KRT23	NM_015515	exon2	c.C24G	p.S8R	.	.	246	8	173	0	.	91
KRT82	3888	bcgsc.ca	37	12	52794400	52794400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KRT82	NM_033033	exon4	c.G688A	p.D230N	.	.	70	4	49	0	.	92
KRTAP4-11	653240	ucsc.edu;bcgsc.ca	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_033059	exon1	c.A277G	p.M93V	.	.	33	21	45	9	.	.
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	128	18	136	0	C|0.500;T|0.500	91
KTN1	3895	bcgsc.ca	37	14	56138584	56138584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	KTN1	NM_001079521	exon37	c.A3520G	p.T1174A	.	.	148	5	185	0	.	1147
L3MBTL1	26013	broad.mit.edu	37	20	42143196	42143196	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	L3MBTL1	NM_015478	exon1	c.A12G	p.R4R	.	.	112	7	90	0	.	227
LAIR1	3903	bcgsc.ca	37	19	54871681	54871681	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LAIR1	NM_002287	exon5	c.365-2A>G	.	.	.	157	5	104	0	.	94
LAMB4	22798	bcgsc.ca	37	7	107735744	107735744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LAMB4	NM_007356	exon12	c.A1399G	p.T467A	.	.	66	4	53	0	.	140
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33670547	33670547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LARGE	NM_004737	exon16	c.G2137A	p.D713N	.	.	187	41	148	0	.	92
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225609820	225609820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LBR	NM_194442	exon3	c.G325T	p.A109S	.	.	76	16	69	0	.	228
LCOR	84458	bcgsc.ca	37	10	98714784	98714784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LCOR	NM_001170766	exon8	c.A407G	p.Q136R	.	.	46	4	54	0	.	189
LDLRAP1	26119	broad.mit.edu	37	1	25883644	25883644	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LDLRAP1	NM_015627	exon4	c.G345A	p.R115R	.	.	350	7	476	1	.	91
LGI4	163175	bcgsc.ca	37	19	35624615	35624615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LGI4	NM_139284	exon3	c.T296C	p.L99P	.	.	63	4	45	0	.	91
LGR5	8549	bcgsc.ca	37	12	71972641	71972641	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LGR5	NM_003667	exon15	c.T1338C	p.T446T	.	.	190	6	175	0	.	527
LIMCH1	22998	bcgsc.ca	37	4	41648895	41648895	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LIMCH1	NM_014988	exon12	c.T1650C	p.V550V	.	.	110	5	74	0	.	26
LINC00085	147650	broad.mit.edu	37	19	52196399	52196399	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	32	16	24	0	.	.
LIPC	3990	bcgsc.ca	37	15	58830543	58830543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LIPC	NM_000236	exon2	c.A100G	p.R34G	.	.	95	4	85	0	.	91
LOC727924	0	bcgsc.ca	37	15	22298322	22298322	+	RNA	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	888	90	1047	0	.	.
LOC81691	0	bcgsc.ca	37	16	20838420	20838420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LOC81691	NM_030941	exon9	c.A862G	p.T288A	.	.	93	5	92	0	.	92
LPA	4018	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160952838	160952838	+	Missense_Mutation	SNP	G	G	A	rs3124784	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LPA	NM_005577	exon40	c.C6046T	p.R2016C	.	.	722	198	916	2	G|0.769;A|0.231	74
LPAL2	80350	bcgsc.ca	37	6	160899662	160899662	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LPAL2	.	.	.	.	.	.	94	5	120	0	.	90
LRBA	987	bcgsc.ca	37	4	151935753	151935753	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRBA	NM_006726	exon2	c.A42G	p.T14T	.	.	71	4	84	0	.	157
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141598619	141598619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRP1B	NM_018557	exon30	c.G4982A	p.R1661H	.	.	170	45	193	0	.	311
LRRC14	9684	bcgsc.ca	37	8	145745678	145745678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRRC14	NM_001272036	exon4	c.A386G	p.Q129R	.	.	57	4	54	0	.	90
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76371941	76371941	+	Silent	SNP	G	G	T	rs180783243	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRRC32	NM_005512	exon3	c.C696A	p.A232A	.	.	80	20	85	0	G|0.999;C|0.001	90
LRRC66	339977	bcgsc.ca	37	4	52861092	52861092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRRC66	NM_001024611	exon4	c.T2096C	p.L699S	.	.	129	5	86	0	.	92
LRRFIP1	9208	bcgsc.ca	37	2	238688142	238688142	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LRRFIP1	NM_001137550	exon24	c.A1890G	p.K630K	.	.	80	4	72	0	.	153
LUZP2	338645	bcgsc.ca	37	11	24753698	24753698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	LUZP2	NM_001252010	exon3	c.A215G	p.D72G	.	.	90	4	73	0	.	92
MAATS1	89876	bcgsc.ca	37	3	119422030	119422030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_033364	exon1	c.A85G	p.S29G	.	.	126	5	139	2	.	.
MAGI2	9863	broad.mit.edu	37	7	77973211	77973211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAGI2	NM_012301	exon9	c.A1292G	p.K431R	.	.	533	8	419	2	.	461
MAGI3	260425	broad.mit.edu	37	1	114224871	114224871	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAGI3	NM_152900	exon21	c.C3366T	p.P1122P	.	.	166	6	223	0	.	524
MAMDC4	158056	ucsc.edu;bcgsc.ca	37	9	139755018	139755018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAMDC4	NM_206920	exon27	c.G3377C	p.G1126A	.	.	45	4	64	0	.	156
MAP3K14	9020	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	43367973	43367973	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MAP3K14	.	.	.	.	.	.	281	55	322	0	.	1453
MARCH8	220972	bcgsc.ca	37	10	45953724	45953724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MARCH8	NM_001002266	exon7	c.A839G	p.E280G	.	.	127	5	130	0	.	68
MATR3	9782	bcgsc.ca	37	5	138651775	138651775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MATR3	NM_018834	exon5	c.T1027C	p.F343L	.	.	216	6	172	0	.	91
MCOLN2	255231	bcgsc.ca	37	1	85431365	85431365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MCOLN2	NM_153259	exon2	c.A104G	p.E35G	.	.	79	4	114	0	.	94
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90371908	90371908	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MDN1	NM_014611	exon87	c.A14463G	p.S4821S	.	.	565	146	735	0	.	100
MEI1	150365	bcgsc.ca	37	22	42128481	42128481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MEI1	NM_152513	exon11	c.A1205G	p.E402G	.	.	91	4	77	0	.	70
MIA3	375056	bcgsc.ca	37	1	222802200	222802200	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MIA3	NM_198551	exon4	c.A1638G	p.G546G	.	.	117	5	95	0	.	98
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222802656	222802656	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MIA3	NM_198551	exon4	c.2094delG	p.Q698fs	.	.	153	27	147	0	.	98
MIR22HG	84981	ucsc.edu	37	17	1617164	1617164	+	RNA	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	161	47	196	1	.	.
MKRN9P	400058	bcgsc.ca	37	12	88177523	88177523	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	65	4	72	0	.	.
MLL3	58508	bcgsc.ca	37	7	151962269	151962269	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MLL3	NM_170606	exon8	c.G1038A	p.V346V	.	.	230	18	313	4	.	1398
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	58079051	58079051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MMP15	NM_002428	exon10	c.G1711A	p.D571N	.	.	70	32	28	0	.	713
MMP17	4326	bcgsc.ca	37	12	132323227	132323227	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MMP17	NM_016155	exon3	c.T363C	p.A121A	.	.	95	5	96	0	.	226
MPDZ	8777	hgsc.bcm.edu	37	9	13108980	13108981	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MPDZ	NM_003829	exon45	c.5934_5935insG	p.S1978fs	.	.	97	18	106	0	.	231
MPP5	64398	bcgsc.ca	37	14	67787032	67787032	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MPP5	NM_022474	exon12	c.T1455C	p.I485I	.	.	65	4	86	0	.	91
MRPL14	64928	bcgsc.ca	37	6	44081843	44081843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	MRPL14,NS,carcinoma,0	MRPL14	NM_032111	exon3	c.C175A	p.H59N	.	.	143	5	108	0	.	91
MRPS14	63931	bcgsc.ca	37	1	174983827	174983827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MRPS14	NM_022100	exon3	c.G365T	p.G122V	.	.	69	4	68	0	.	186
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	64957171	64957171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MSN	NM_002444	exon10	c.C1222T	p.R408W	.	.	324	46	275	0	.	1086
MTBP	27085	broad.mit.edu	37	8	121509688	121509688	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MTBP	NM_022045	exon14	c.T1503C	p.S501S	.	.	509	8	426	0	.	228
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30415674	30415674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MTMR3	NM_153050	exon17	c.G2026A	p.A676T	.	.	70	18	71	0	.	292
MTUS2	23281	bcgsc.ca	37	13	30071472	30071472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MTUS2	NM_001033602	exon11	c.A3707G	p.E1236G	.	.	22	3	66	0	.	218
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9087246	9087246	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MUC16	NM_024690	exon1	c.C4569A	p.I1523I	.	.	298	54	210	0	.	566
MUC4	4585	bcgsc.ca	37	3	195510005	195510005	+	Missense_Mutation	SNP	A	A	G	rs199924409	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MUC4	NM_018406	exon2	c.T8446C	p.S2816P	.	.	270	19	457	20	C|0.001;G|0.999	90
MUC4	4585	bcgsc.ca	37	3	195515242	195515242	+	Missense_Mutation	SNP	A	A	G	rs2948678		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MUC4	NM_018406	exon2	c.T3209C	p.V1070A	.	.	170	18	317	16	.	90
MYBL2	4605	bcgsc.ca	37	20	42328488	42328488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYBL2	NM_002466	exon7	c.A755G	p.K252R	.	.	134	5	108	0	.	415
MYH11	4629	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15814851	15814851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYH11	NM_001040114	exon34	c.A4657G	p.T1553A	.	.	169	27	160	5	.	666
MYH13	8735	bcgsc.ca	37	17	10206776	10206776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYH13	NM_003802	exon38	c.A5506G	p.R1836G	.	.	217	6	255	0	.	6
MYL1	4632	bcgsc.ca	37	2	211163159	211163159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYL1	NM_079420	exon3	c.A289G	p.N97D	.	.	98	4	119	0	.	91
MYO6	4646	bcgsc.ca	37	6	76580364	76580364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYO6	NM_004999	exon19	c.A1945G	p.T649A	.	.	80	4	97	0	.	92
MYO7A	4647	bcgsc.ca	37	11	76858922	76858922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYO7A	NM_001127179	exon4	c.A211G	p.I71V	.	.	65	4	52	0	.	138
MYOCD	93649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12626295	12626295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	MYOCD	NM_001146312	exon5	c.G385T	p.V129L	.	.	112	42	145	1	.	93
NASP	4678	bcgsc.ca	37	1	46073115	46073115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NASP	NM_002482	exon6	c.A532G	p.M178V	.	.	156	5	203	0	.	91
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46083194	46083194	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NASP	NM_002482	exon14	c.G2217A	p.P739P	.	.	35	12	47	0	.	91
NCAPH	23397	bcgsc.ca	37	2	97033106	97033106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NCAPH	NM_015341	exon15	c.G1993A	p.A665T	.	.	132	6	119	1	.	228
NCBP1	4686	bcgsc.ca	37	9	100423259	100423259	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NCBP1	NM_002486	exon16	c.T1509C	p.C503C	.	.	165	6	212	2	.	90
NCK2	8440	bcgsc.ca	37	2	106509478	106509478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NCK2	NM_001004720	exon4	c.A989G	p.N330S	.	.	83	4	77	0	.	415
NCOA1	8648	bcgsc.ca	37	2	24928070	24928070	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NCOA1	NM_147223	exon10	c.A1065G	p.Q355Q	.	.	136	6	120	0	.	228
NCOA3	8202	mdanderson.org	37	20	46279827	46279827	+	Silent	SNP	G	G	A	rs6018623	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NCOA3	NM_181659	exon20	c.G3753A	p.Q1251Q	.	.	92	36	72	0	G|0.861;A|0.139	229
NCOR1	9611	bcgsc.ca	37	17	16005110	16005110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NCOR1	NM_001190440	exon19	c.A2192G	p.N731S	.	.	56	4	86	0	.	229
NEBL	10529	bcgsc.ca	37	10	21462733	21462733	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEBL	NM_001173484	exon1	c.A30G	p.K10K	.	.	52	5	42	0	.	92
NEDD9	4739	bcgsc.ca	37	6	11201278	11201278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEDD9	NM_182966	exon3	c.T461C	p.V154A	.	.	192	6	170	0	.	226
NEK6	10783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127074912	127074912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEK6	NM_001166171	exon4	c.C317T	p.A106V	.	.	26	6	49	0	.	334
NEO1	4756	broad.mit.edu;bcgsc.ca	37	15	73558728	73558728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NEO1	NM_001172623	exon16	c.A2470G	p.S824G	.	.	124	6	141	0	.	116
NETO1	81832	bcgsc.ca	37	18	70532077	70532077	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NETO1	NM_001201465	exon3	c.T186C	p.Y62Y	.	.	172	6	240	1	.	94
NF1	4763	bcgsc.ca	37	17	29687678	29687678	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NF1	NM_001042492	exon57	c.T8334C	p.L2778L	.	.	148	6	194	1	.	3353
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24845640	24845640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFATC4	NM_001198967	exon10	c.G2386A	p.E796K	.	.	108	23	147	0	.	92
NFE2L1	4779	hgsc.bcm.edu;bcgsc.ca	37	17	46128958	46128959	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFE2L1	NM_003204	exon2	c.478_479insC	p.A160fs	.	.	63	19	65	0	.	91
NFS1	9054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34286442	34286442	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NFS1	NM_021100	exon2	c.G168A	p.L56L	.	.	337	51	260	0	.	92
NKX1-2	390010	bcgsc.ca	37	10	126138337	126138337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001146340	exon1	c.C176T	p.A59V	.	.	60	4	67	0	.	.
NKX2-3	159296	bcgsc.ca	37	10	101292962	101292962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NKX2-3	NM_145285	exon1	c.A74G	p.Q25R	.	.	71	4	112	0	.	91
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5811323	5811323	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NLGN4X	NM_181332	exon6	c.T1986C	p.T662T	.	.	896	334	739	1	.	195
NLRP1	22861	ucsc.edu	37	17	5487031	5487031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NLRP1	NM_033007	exon1	c.T247C	p.C83R	.	.	52	5	62	1	.	274
NLRP9	338321	broad.mit.edu;bcgsc.ca	37	19	56220375	56220375	+	Missense_Mutation	SNP	T	T	C	rs201878652		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NLRP9	NM_176820	exon9	c.A2879G	p.K960R	.	.	290	9	230	0	T|0.999;C|0.000	294
NMU	10874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56475318	56475318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NMU	NM_006681	exon4	c.T248G	p.F83C	.	.	194	33	131	0	.	650
NOL10	79954	bcgsc.ca	37	2	10743214	10743214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_024894	exon15	c.T1223C	p.L408P	.	.	125	5	110	0	.	.
NOP2	4839	bcgsc.ca	37	12	6672782	6672782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOP2	NM_001258309	exon8	c.A785G	p.Q262R	.	.	89	4	79	0	.	92
NOS1	4842	bcgsc.ca	37	12	117705934	117705934	+	Missense_Mutation	SNP	T	T	C	rs79487279	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOS1	NM_000620	exon11	c.A1855G	p.M619V	.	.	104	5	96	0	T|0.378;A|0.622	154
NOS2	4843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26088234	26088234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOS2	NM_000625	exon23	c.G2824A	p.G942S	.	.	133	38	182	0	.	156
NOS3	4846	ucsc.edu	37	7	150696390	150696390	+	Missense_Mutation	SNP	T	T	G	rs201023253		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOS3	NM_001160111	exon8	c.T1069G	p.Y357D	.	.	40	17	56	14	T|0.998;G|0.002	1011
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32181471	32181471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOTCH4	NM_004557	exon14	c.G2314T	p.V772L	.	.	115	20	87	0	.	1321
NOVA2	4858	bcgsc.ca	37	19	46443354	46443354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NOVA2	NM_002516	exon4	c.A1246G	p.N416D	.	.	108	6	74	0	.	226
NPC1	4864	bcgsc.ca	37	18	21114489	21114489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NPC1	NM_000271	exon23	c.T3512C	p.I1171T	.	.	73	4	101	0	.	92
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271533	164271533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NPY5R	NM_006174	exon4	c.T108G	p.S36R	.	.	374	89	335	0	.	523
NRP1	8829	bcgsc.ca	37	10	33552644	33552644	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NRP1	NM_001024629	exon4	c.T588C	p.P196P	.	.	128	5	125	0	.	525
NTNG1	22854	bcgsc.ca	37	1	107691401	107691401	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	NTNG1	NM_014917	exon2	c.A186G	p.K62K	.	.	55	4	62	0	.	140
NUSAP1	51203	bcgsc.ca	37	15	41672294	41672294	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_016359	exon11	c.A1236G	p.E412E	.	.	97	4	106	0	.	.
OAS1	4938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	113344971	113344971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OAS1	NM_001032409	exon1	c.G127T	p.E43X	.	.	305	92	332	0	.	70
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228553142	228553142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OBSCN	NM_001271223	exon93	c.A21815G	p.E7272G	.	.	171	41	143	4	.	403
ODF2L	57489	bcgsc.ca	37	1	86820494	86820494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ODF2L	NM_001007022	exon15	c.A1567G	p.N523D	.	.	63	4	116	0	.	69
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549059	158549059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR10X1	NM_001004477	exon1	c.A631G	p.T211A	.	.	235	39	159	0	.	69
OR1C1	26188	bcgsc.ca	37	1	247921128	247921128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR1C1	NM_012353	exon1	c.T581C	p.F194S	.	.	221	7	159	0	.	91
OR1L1	26737	bcgsc.ca	37	9	125424514	125424514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR1L1	NM_001005236	exon1	c.A520G	p.I174V	.	.	280	7	336	1	.	72
OR2AP1	121129	bcgsc.ca	37	12	55968788	55968788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR2AP1	NM_001258285	exon1	c.T590C	p.V197A	.	.	12	3	19	0	.	69
OR51G1	79324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4945133	4945133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR51G1	NM_001005237	exon1	c.T437C	p.M146T	.	.	50	10	44	0	.	70
OR52A5	390054	bcgsc.ca	37	11	5153253	5153253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR52A5	NM_001005160	exon1	c.T620C	p.F207S	.	.	152	5	116	0	.	71
OR52A5	390054	broad.mit.edu	37	11	5153280	5153280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR52A5	NM_001005160	exon1	c.A593G	p.N198S	.	.	194	6	148	0	.	71
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4567048	4567048	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR52M1	NM_001004137	exon1	c.T628C	p.L210L	.	.	374	78	324	0	.	68
OR56A3	390083	bcgsc.ca	37	11	5969163	5969163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR56A3	NM_001003443	exon1	c.T587C	p.V196A	.	.	164	5	191	0	.	68
OR5AU1	390445	bcgsc.ca	37	14	21624124	21624124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR5AU1	NM_001004731	exon1	c.T61C	p.S21P	.	.	136	5	130	0	.	68
OR8G2	26492	bcgsc.ca	37	11	124095856	124095856	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001007249	exon1	c.C459T	p.H153H	.	.	237	8	264	0	.	.
OR8H2	390151	bcgsc.ca	37	11	55873146	55873146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OR8H2	NM_001005200	exon1	c.T628C	p.S210P	.	.	187	6	220	0	.	70
ORC5	5001	bcgsc.ca	37	7	103807262	103807262	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ORC5	NM_002553	exon10	c.T948C	p.A316A	.	.	137	5	101	0	.	206
OTOF	9381	bcgsc.ca	37	2	26690080	26690080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OTOF	NM_194248	exon35	c.T4249C	p.S1417P	.	.	65	4	69	0	.	135
OVGP1	5016	bcgsc.ca	37	1	111964286	111964286	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	OVGP1	NM_002557	exon7	c.T618C	p.D206D	.	.	59	4	98	0	.	135
P2RX1	5023	bcgsc.ca	37	17	3819509	3819509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	P2RX1	NM_002558	exon1	c.G11T	p.R4L	.	.	33	4	78	0	.	70
PABPC1	26986	bcgsc.ca	37	8	101727702	101727702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PABPC1	NM_002568	exon4	c.T631C	p.F211L	.	.	142	5	127	0	.	68
PAPOLB	56903	hgsc.bcm.edu	37	7	4899719	4899720	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PAPOLB	NM_020144	exon1	c.1723_1724insA	p.F575fs	.	.	208	17	137	0	.	493
PARN	5073	bcgsc.ca	37	16	14723513	14723513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PARN	NM_002582	exon2	c.A38G	p.H13R	.	.	73	4	78	0	.	24
PARP4	143	bcgsc.ca	37	13	25052321	25052321	+	Silent	SNP	A	A	G	rs149727830	alternate_allele	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PARP4	NM_006437	exon13	c.T1542C	p.H514H	.	.	54	4	105	0	A|1.000;C|0.000	94
PAXIP1	22976	bcgsc.ca	37	7	154751635	154751635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PAXIP1	NM_007349	exon13	c.A2443G	p.R815G	.	.	129	5	125	0	.	228
PCDH8	5100	ucsc.edu;bcgsc.ca	37	13	53422356	53422356	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDH8	NM_032949	exon1	c.T216C	p.S72S	.	.	41	5	33	0	.	153
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140216086	140216086	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDHA7	NM_031852	exon1	c.G2118T	p.A706A	.	.	490	279	364	0	.	94
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140222188	140222188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCDHA8	NM_031856	exon1	c.C1282T	p.R428W	.	.	339	58	322	0	.	92
PCM1	5108	bcgsc.ca	37	8	17822155	17822155	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCM1	NM_006197	exon18	c.A2733G	p.G911G	.	.	63	4	122	0	.	742
PCM1	5108	bcgsc.ca	37	8	17838098	17838098	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCM1	NM_006197	exon24	c.3944-2A>G	.	.	.	49	4	85	0	.	742
PCSK4	54760	bcgsc.ca	37	19	1484128	1484128	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PCSK4	NM_017573	exon10	c.1069-2A>G	.	.	.	99	6	142	2	.	90
PDE8A	5151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85660890	85660890	+	Silent	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PDE8A	NM_002605	exon17	c.T1554A	p.G518G	.	.	406	92	343	0	.	94
PDE9A	5152	broad.mit.edu	37	21	44163890	44163890	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PDE9A	NM_002606	exon8	c.A573G	p.E191E	.	.	271	6	246	1	.	92
PDGFRA	5156	bcgsc.ca	37	4	55138602	55138602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PDGFRA	NM_006206	exon9	c.T1279C	p.S427P	.	.	215	6	176	0	.	9497
PDK4	5166	bcgsc.ca	37	7	95225538	95225538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PDK4	NM_002612	exon1	c.A68G	p.E23G	.	.	136	6	101	4	.	358
PEAK1	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77407621	77407621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_024776	exon8	c.A4118G	p.H1373R	.	.	64	9	78	0	.	.
PGBD5	79605	bcgsc.ca	37	1	230459363	230459363	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PGBD5	NM_001258311	exon7	c.T1383C	p.Y461Y	.	.	153	6	130	2	.	93
PHC3	80012	bcgsc.ca	37	3	169846937	169846937	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PHC3	NM_024947	exon8	c.T1323C	p.A441A	.	.	85	4	145	0	.	227
PIGS	94005	ucsc.edu	37	17	26898183	26898183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PIGS	NM_033198	exon2	c.G58A	p.A20T	.	.	40	4	59	1	.	289
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130830386	130830386	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PIWIL1	NM_004764	exon4	c.A279G	p.T93T	.	.	161	28	153	0	.	92
PLCH2	9651	bcgsc.ca	37	1	2428065	2428065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PLCH2	NM_014638	exon14	c.A1855G	p.T619A	.	.	76	5	147	1	.	229
PLEKHS1	79949	bcgsc.ca	37	10	115527140	115527140	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_024889	exon5	c.A261G	p.E87E	.	.	98	5	120	0	.	.
PLK3	1263	bcgsc.ca	37	1	45266751	45266751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PLK3	NM_004073	exon3	c.A362G	p.H121R	.	.	145	5	178	0	.	333
PLOD1	5351	bcgsc.ca	37	1	12024230	12024230	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PLOD1	NM_000302	exon12	c.1203-2A>G	.	.	.	64	4	81	0	.	155
PLXNA4	91584	bcgsc.ca	37	7	132174212	132174212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PLXNA4	NM_001105543	exon3	c.T1210C	p.F404L	.	.	66	4	58	0	.	91
PLXNB2	23654	bcgsc.ca	37	22	50720443	50720443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PLXNB2	NM_012401	exon20	c.A3185G	p.E1062G	.	.	55	4	50	0	.	211
PLXNB2	23654	broad.mit.edu	37	22	50716042	50716042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PLXNB2	NM_012401	exon33	c.G5174A	p.R1725H	.	.	147	4	174	0	.	211
PMPCB	9512	bcgsc.ca	37	7	102939142	102939142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PMPCB	NM_004279	exon2	c.T227C	p.L76P	.	.	96	4	88	0	.	94
PMPCB	9512	bcgsc.ca	37	7	102940674	102940674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PMPCB	NM_004279	exon4	c.T377C	p.M126T	.	.	171	6	117	0	.	94
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133240672	133240672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	POLE	NM_006231	exon23	c.A2624C	p.N875T	.	.	214	59	244	0	.	233
PPIL2	23759	bcgsc.ca	37	22	22049697	22049697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PPIL2	NM_014337	exon20	c.A1481G	p.E494G	.	.	117	8	117	1	.	92
PPIL4	85313	bcgsc.ca	37	6	149846283	149846283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PPIL4	NM_139126	exon9	c.A866G	p.E289G	.	.	163	5	188	0	.	90
PPP1R12B	4660	bcgsc.ca	37	1	202407165	202407165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PPP1R12B	NM_001167857	exon10	c.A1471G	p.R491G	.	.	114	5	101	1	.	229
PPP1R8	5511	bcgsc.ca	37	1	28165334	28165334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PPP1R8	NM_014110	exon3	c.A242G	p.K81R	.	.	229	6	302	0	.	226
PRAMEF1	65121	broad.mit.edu	37	1	12853484	12853484	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PRAMEF1	NM_023013	exon2	c.T108C	p.Y36Y	.	.	306	8	417	4	.	22
PRDM10	56980	bcgsc.ca	37	11	129793198	129793198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PRDM10	NM_020228	exon14	c.T1991C	p.L664P	.	.	115	6	134	0	.	91
PRELP	5549	bcgsc.ca	37	1	203453018	203453018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PRELP	NM_201348	exon2	c.A706G	p.M236V	.	.	180	6	138	1	.	516
PREX2	80243	bcgsc.ca	37	8	69046443	69046443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PREX2	NM_024870	exon32	c.A3916G	p.R1306G	.	.	130	5	97	0	.	390
PRICKLE2	166336	bcgsc.ca	37	3	64138882	64138882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PRICKLE2	NM_198859	exon6	c.T763C	p.C255R	.	.	69	5	102	0	.	95
PRKDC	5591	bcgsc.ca	37	8	48751726	48751726	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PRKDC	.	.	.	.	.	.	104	5	194	0	.	1515
PROC	5624	bcgsc.ca	37	2	128184703	128184703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PROC	NM_000312	exon8	c.A701G	p.K234R	.	.	59	4	49	0	.	90
PRRC2B	84726	bcgsc.ca	37	9	134322028	134322028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PRRC2B	NM_013318	exon6	c.T854C	p.F285S	.	.	67	4	77	0	.	24
PSAPL1	768239	bcgsc.ca	37	4	7435681	7435681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PSAPL1	NM_001085382	exon1	c.T926C	p.M309T	.	.	78	5	55	0	.	68
PTPRD	5789	broad.mit.edu;bcgsc.ca	37	9	8486092	8486092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	PTPRD	NM_002839	exon28	c.A2725G	p.K909E	.	.	352	8	341	2	.	912
R3HCC1L	27291	bcgsc.ca	37	10	99967947	99967947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001256620	exon4	c.A76G	p.R26G	.	.	164	5	183	0	.	.
RAB5B	5869	bcgsc.ca	37	12	56385980	56385980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RAB5B	NM_002868	exon6	c.A632G	p.Q211R	.	.	114	5	116	0	.	227
RAB9A	9367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13727290	13727290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RAB9A	NM_004251	exon3	c.G425A	p.C142Y	.	.	102	20	83	0	.	660
RABGAP1	23637	bcgsc.ca	37	9	125746985	125746985	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RABGAP1	NM_012197	exon3	c.A372G	p.K124K	.	.	46	4	63	0	.	500
RAG1	5896	bcgsc.ca	37	11	36594986	36594986	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RAG1	NM_000448	exon2	c.A132G	p.E44E	.	.	68	4	73	0	.	230
RBM26	64062	bcgsc.ca	37	13	79946027	79946027	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RBM26	NM_022118	exon4	c.A366G	p.R122R	.	.	65	4	73	0	.	91
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155556582	155556582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RBM33	NM_053043	exon15	c.A3056T	p.Q1019L	.	.	106	26	101	0	.	23
RBM5	10181	bcgsc.ca	37	3	50153388	50153388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RBM5	NM_005778	exon22	c.A2069G	p.E690G	.	.	75	4	107	0	.	278
RBM6	10180	broad.mit.edu;bcgsc.ca	37	3	50005941	50005941	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RBM6	NM_005777	exon3	c.A1083G	p.Q361Q	.	.	197	7	250	0	.	280
REC8	9985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24646590	24646590	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	REC8	NM_005132	exon10	c.734+1G>T	.	.	.	220	51	249	0	.	90
RECQL5	9400	bcgsc.ca	37	17	73658983	73658983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RECQL5	NM_001003715	exon4	c.T347C	p.L116P	.	.	156	5	185	0	.	538
RESP18	389075	bcgsc.ca	37	2	220193716	220193716	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RESP18	NM_001007089	exon6	c.T570C	p.C190C	.	.	86	4	80	0	.	90
RHOT2	89941	hgsc.bcm.edu	37	16	723073	723074	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RHOT2	NM_138769	exon18	c.1673_1674insC	p.G558fs	.	.	116	12	130	0	.	91
RMDN3	55177	bcgsc.ca	37	15	41030737	41030737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_018145	exon8	c.A1009G	p.S337G	.	.	53	5	74	0	.	.
RNF6	6049	bcgsc.ca	37	13	26788241	26788241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RNF6	NM_183043	exon5	c.1778delT	p.L593fs	.	.	68	7	153	1	.	228
RNU5F-1	26828	ucsc.edu	37	1	220091886	220091886	+	RNA	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	29	15	19	0	.	.
ROCK2	9475	broad.mit.edu	37	2	11351808	11351808	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ROCK2	NM_004850	exon18	c.A2202G	p.K734K	.	.	568	10	624	1	.	546
RPA1	6117	bcgsc.ca	37	17	1782584	1782584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RPA1	NM_002945	exon10	c.A835G	p.T279A	.	.	86	4	99	0	.	651
RPP30	10556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92638835	92638835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RPP30	NM_006413	exon5	c.A286G	p.R96G	.	.	81	21	129	0	.	226
RUFY2	55680	bcgsc.ca	37	10	70105615	70105615	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RUFY2	NM_017987	exon18	c.A1836G	p.E612E	.	.	92	4	132	0	.	91
RUNDC3A	10900	bcgsc.ca	37	17	42392615	42392615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001144825	exon7	c.T722C	p.V241A	.	.	77	5	58	0	.	.
RYR1	6261	bcgsc.ca	37	19	39034222	39034222	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	RYR1	NM_000540	exon86	c.A11829G	p.E3943E	.	.	113	5	110	0	.	100
SAMM50	25813	bcgsc.ca	37	22	44385115	44385115	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SAMM50	NM_015380	exon13	c.A1200G	p.G400G	.	.	62	4	53	0	.	91
SBNO2	22904	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1109390	1109390	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_014963	exon29	c.G3249A	p.A1083A	.	.	27	13	12	0	.	.
SCGB2A1	4246	broad.mit.edu	37	11	61978048	61978048	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SCGB2A1	NM_002407	exon2	c.T219C	p.T73T	.	.	205	6	198	0	.	90
SDCBP2	27111	bcgsc.ca	37	20	1293012	1293012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SDCBP2	NM_080489	exon7	c.A701G	p.E234G	.	.	79	4	66	0	.	154
SDHAP2	727956	ucsc.edu	37	3	195398271	195398271	+	RNA	SNP	A	A	G	rs4927673		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	.	.	.	33	8	24	3	.	.
SECISBP2	79048	bcgsc.ca	37	9	91956303	91956303	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SECISBP2	NM_024077	exon10	c.G1344A	p.V448V	.	.	87	4	75	0	.	93
SEMA3A	10371	bcgsc.ca	37	7	83640613	83640613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SEMA3A	NM_006080	exon8	c.A811G	p.N271D	.	.	155	5	140	0	.	156
SEMA4D	10507	bcgsc.ca	37	9	91991938	91991938	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SEMA4D	NM_001142287	exon18	c.T1692C	p.P564P	.	.	73	4	72	0	.	92
SEMA4G	57715	bcgsc.ca	37	10	102732708	102732708	+	Silent	SNP	C	C	T	rs141766082	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SEMA4G	NM_001203244	exon1	c.C39T	p.L13L	.	.	67	4	72	0	C|1.000;T|0.000	154
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21133628	21133628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPIND1	NM_000185	exon2	c.A28G	p.I10V	.	.	36	5	46	0	.	414
SERPINE1	5054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100771835	100771835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPINE1	NM_000602	exon2	c.A161G	p.N54S	.	.	125	13	100	0	.	652
SERPINI1	5274	bcgsc.ca	37	3	167542309	167542309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SERPINI1	NM_005025	exon8	c.T1115C	p.V372A	.	.	190	6	241	2	.	226
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26695027	26695027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SEZ6L	NM_021115	exon5	c.G1240A	p.V414M	.	.	142	25	95	0	.	95
SGK1	6446	bcgsc.ca	37	6	134494225	134494225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SGK1	NM_001143676	exon8	c.T770C	p.L257P	.	.	152	6	206	0	.	981
SH3KBP1	30011	hgsc.bcm.edu	37	X	19560246	19560247	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SH3KBP1	NM_031892	exon16	c.1689_1690insC	p.P563fs	.	.	192	14	147	0	.	130
SH3PXD2A	9644	bcgsc.ca	37	10	105363436	105363436	+	Silent	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SH3PXD2A	NM_014631	exon14	c.C1455A	p.R485R	.	.	111	5	87	0	.	226
SIGLEC15	284266	bcgsc.ca	37	18	43417007	43417007	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SIGLEC15	NM_213602	exon2	c.A66G	p.R22R	.	.	61	4	98	0	.	90
SKIV2L	6499	broad.mit.edu;bcgsc.ca	37	6	31930790	31930790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SKIV2L	NM_006929	exon13	c.T1325C	p.I442T	.	.	163	6	131	0	.	290
SLAMF7	57823	broad.mit.edu	37	1	160720206	160720206	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLAMF7	NM_021181	exon4	c.A762G	p.R254R	.	.	462	8	420	1	.	93
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22398984	22398984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC17A6	NM_020346	exon12	c.G1447A	p.A483T	.	.	319	62	342	0	.	580
SLC22A25	387601	bcgsc.ca	37	11	62932009	62932009	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC22A25	NM_199352	exon8	c.T1383C	p.P461P	.	.	70	4	91	0	.	72
SLC24A5	283652	bcgsc.ca	37	15	48434338	48434338	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC24A5	NM_205850	exon9	c.A1293G	p.A431A	.	.	159	5	202	0	.	90
SLC26A7	115111	bcgsc.ca	37	8	92261998	92261998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC26A7	NM_134266	exon2	c.A119G	p.H40R	.	.	113	5	111	0	.	92
SLC35G5	83650	bcgsc.ca	37	8	11189433	11189433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_054028	exon1	c.C818T	p.A273V	.	.	172	6	344	0	.	.
SLC48A1	55652	bcgsc.ca	37	12	48172850	48172850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC48A1	NM_017842	exon2	c.A176G	p.Y59C	.	.	191	7	197	0	.	90
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656071	40656071	+	Silent	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLC8A1	NM_001252624	exon1	c.A1350T	p.T450T	.	.	70	10	83	0	.	93
SLFN11	91607	bcgsc.ca	37	17	33687361	33687361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SLFN11	NM_152270	exon3	c.T1099C	p.C367R	.	.	78	4	84	0	.	159
SMC1A	8243	bcgsc.ca	37	X	53435994	53435994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SMC1A	NM_006306	exon9	c.T1544C	p.V515A	.	.	92	4	72	0	.	232
SMG5	23381	bcgsc.ca	37	1	156246881	156246881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SMG5	NM_015327	exon4	c.T449C	p.L150P	.	.	170	5	131	0	.	231
SMPDL3A	10924	bcgsc.ca	37	6	123116841	123116841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SMPDL3A	NM_006714	exon2	c.T132C	p.T44T	.	.	134	5	196	0	.	90
SMYD2	56950	bcgsc.ca	37	1	214505402	214505402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SMYD2	NM_020197	exon10	c.A979G	p.K327E	.	.	87	4	72	0	.	227
SNRNP200	23020	bcgsc.ca	37	2	96957522	96957522	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SNRNP200	NM_014014	exon17	c.A2277G	p.T759T	.	.	66	4	88	0	.	162
SNX14	57231	bcgsc.ca	37	6	86248584	86248584	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SNX14	NM_153816	exon17	c.1449-2A>G	.	.	.	149	6	212	0	.	226
SNX2	6643	broad.mit.edu;bcgsc.ca	37	5	122163330	122163330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SNX2	NM_003100	exon14	c.A1498G	p.T500A	.	.	275	7	183	1	.	226
SORCS1	114815	hgsc.bcm.edu	37	10	108339122	108339122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SORCS1	NM_001206571	exon25	c.G3376A	p.V1126M	.	.	105	7	118	0	.	153
SP1	6667	bcgsc.ca	37	12	53777330	53777330	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SP1	NM_138473	exon3	c.C1599T	p.N533N	.	.	85	4	86	0	.	228
SPEG	10290	bcgsc.ca	37	2	220347962	220347962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SPEG	NM_005876	exon30	c.A5777G	p.E1926G	.	.	118	5	111	0	.	383
SPI1	6688	bcgsc.ca	37	11	47381416	47381416	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SPI1	NM_001080547	exon3	c.T321C	p.S107S	.	.	49	4	63	0	.	226
SPINK8	646424	bcgsc.ca	37	3	48361005	48361005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001080525	exon3	c.A221G	p.H74R	.	.	81	5	96	0	.	.
SPSB3	90864	bcgsc.ca	37	16	1827804	1827804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SPSB3	NM_080861	exon6	c.T665C	p.V222A	.	.	80	5	89	0	.	226
SPTBN5	51332	bcgsc.ca	37	15	42152889	42152889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SPTBN5	NM_016642	exon47	c.A7778G	p.Q2593R	.	.	136	5	126	0	.	91
SREBF1	6720	broad.mit.edu;bcgsc.ca	37	17	17718247	17718247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SREBF1	NM_001005291	exon15	c.A2594G	p.D865G	.	.	83	6	96	0	.	91
SRGAP2D	100996712	broad.mit.edu	37	1	121116009	121116009	+	Silent	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001271887	exon2	c.A205C	p.R69R	.	.	705	30	655	1	.	.
SRGAP2D	100996712	broad.mit.edu;bcgsc.ca	37	1	206566223	206566223	+	Silent	SNP	A	A	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001271887	exon2	c.A205C	p.R69R	.	.	1592	56	1263	2	.	.
SRPX	8406	bcgsc.ca	37	X	38020262	38020262	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SRPX	NM_001170752	exon6	c.A699G	p.G233G	.	.	189	6	205	2	.	130
SRRM1	10250	broad.mit.edu	37	1	24993374	24993374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SRRM1	NM_005839	exon13	c.C1697A	p.P566H	.	.	136	6	216	1	.	93
ST3GAL6	10402	bcgsc.ca	37	3	98503792	98503792	+	Missense_Mutation	SNP	A	A	G	rs112115496	byfrequency	TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ST3GAL6	NM_001271145	exon6	c.A498G	p.I166M	.	.	98	5	103	1	A|0.967;G|0.033	91
STAM2	10254	bcgsc.ca	37	2	153003709	153003709	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	STAM2	NM_005843	exon5	c.A414G	p.E138E	.	.	80	4	95	0	.	187
STAMBPL1	57559	bcgsc.ca	37	10	90673010	90673010	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	STAMBPL1	NM_020799	exon6	c.A573G	p.R191R	.	.	110	6	125	0	.	523
STK24	8428	bcgsc.ca	37	13	99118670	99118670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	STK24	NM_003576	exon6	c.A779G	p.K260R	.	.	95	4	157	0	.	979
STK36	27148	bcgsc.ca	37	2	219549939	219549939	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	STK36	NM_015690	exon11	c.A1368G	p.E456E	.	.	105	5	146	0	.	1004
STK3	6788	bcgsc.ca	37	8	99779472	99779472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	STK3	NM_001256312	exon5	c.A319G	p.S107G	.	.	85	5	79	0	.	978
STRIP1	85369	bcgsc.ca	37	1	110592973	110592973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_033088	exon18	c.T1898C	p.V633A	.	.	246	6	304	1	.	.
SUGP2	10147	bcgsc.ca	37	19	19136951	19136951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SUGP2	NM_014884	exon3	c.T206C	p.V69A	.	.	55	4	58	0	.	91
SULT6B1	391365	bcgsc.ca	37	2	37406688	37406688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SULT6B1	NM_001032377	exon4	c.T328C	p.S110P	.	.	92	5	89	0	.	91
SV2A	9900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149881036	149881036	+	Missense_Mutation	SNP	G	G	A	rs200303127		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SV2A	NM_014849	exon7	c.C1267T	p.R423W	.	.	274	36	173	0	G|0.999;A|0.000	97
SYDE1	85360	bcgsc.ca	37	19	15224760	15224760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SYDE1	NM_033025	exon8	c.A2194G	p.N732D	.	.	86	4	69	0	.	92
SYMPK	8189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	46319169	46319169	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SYMPK	NM_004819	exon26	c.C3627T	p.D1209D	.	.	113	17	104	0	.	91
SYNE2	23224	bcgsc.ca	37	14	64600830	64600830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SYNE2	NM_182914	exon78	c.A14558G	p.D4853G	.	.	145	5	171	0	.	164
SZT2	23334	bcgsc.ca	37	1	43896004	43896004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	SZT2	NM_015284	exon30	c.T4253C	p.V1418A	.	.	127	5	171	0	.	144
TAF1	6872	bcgsc.ca	37	X	70604873	70604873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TAF1	NM_004606	exon14	c.T2260C	p.S754P	.	.	234	6	208	0	.	900
TAS2R14	50840	bcgsc.ca	37	12	11091532	11091532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TAS2R14	NM_023922	exon1	c.T275C	p.I92T	.	.	100	5	97	0	.	90
TBL1XR1	79718	bcgsc.ca	37	3	176750834	176750834	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TBL1XR1	NM_024665	exon14	c.T1341C	p.S447S	.	.	229	7	387	0	.	187
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102842040	102842040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TCEAL4	NM_001006935	exon3	c.A437T	p.H146L	.	.	227	90	185	0	.	130
TCOF1	6949	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	149769583	149769583	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TCOF1	NM_001135243	exon19	c.T3180C	p.T1060T	.	.	146	88	82	2	.	155
TDRD1	56165	broad.mit.edu;bcgsc.ca	37	10	115963274	115963274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TDRD1	NM_198795	exon8	c.A929G	p.D310G	.	.	109	5	99	0	.	90
TEFM	79736	bcgsc.ca	37	17	29226196	29226196	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_024683	exon4	c.T1074C	p.S358S	.	.	51	4	52	0	.	.
TFRC	7037	bcgsc.ca	37	3	195798993	195798993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	TFRC,NS,carcinoma,-1	TFRC	NM_001128148	exon5	c.T465C	p.R155R	.	.	134	7	168	1	.	653
THAP4	51078	bcgsc.ca	37	2	242572595	242572595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_015963	exon2	c.T977C	p.M326T	.	.	53	5	48	0	.	.
THG1L	54974	bcgsc.ca	37	5	157164994	157164994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	THG1L	NM_017872	exon5	c.T727C	p.W243R	.	.	66	4	61	0	.	90
THNSL1	79896	bcgsc.ca	37	10	25312784	25312784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	THNSL1	NM_024838	exon3	c.A632G	p.E211G	.	.	116	6	129	0	.	91
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	36757042	36757042	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	THRAP3	NM_005119	exon6	c.C1813T	p.Q605X	.	.	213	67	267	0	.	663
TICRR	90381	bcgsc.ca	37	15	90167850	90167850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_152259	exon20	c.A4309G	p.R1437G	.	.	53	4	51	0	.	.
TIMELESS	8914	bcgsc.ca	37	12	56817413	56817413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TIMELESS	NM_003920	exon17	c.T2045C	p.V682A	.	.	73	5	101	0	.	159
TLE2	7089	bcgsc.ca	37	19	3005499	3005499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001144761	exon18	c.A1874G	p.N625S	.	.	94	5	110	0	.	.
TLE4	7091	bcgsc.ca	37	9	82333782	82333782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TLE4	NM_007005	exon15	c.A1486G	p.S496G	.	.	149	5	138	0	.	524
TMEM151B	441151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44241031	44241031	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001137560	exon2	c.A364T	p.M122L	.	.	165	28	155	1	.	.
TMEM198	130612	bcgsc.ca	37	2	220409601	220409601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TMEM198	NM_001005209	exon2	c.T152C	p.V51A	.	.	237	7	249	0	.	23
TMPRSS9	360200	bcgsc.ca	37	19	2413950	2413950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TMPRSS9	NM_182973	exon9	c.C1405T	p.P469S	.	.	51	4	61	0	.	91
TNFRSF10B	8795	bcgsc.ca	37	8	22888296	22888296	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TNFRSF10B	NM_147187	exon3	c.T340C	p.L114L	.	.	80	4	158	0	.	1083
TRDN	10345	bcgsc.ca	37	6	123786117	123786117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TRDN	NM_006073	exon10	c.G865A	p.A289T	.	.	48	4	97	0	.	91
TREX2	11219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152710779	152710779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TREX2	NM_080701	exon2	c.G110A	p.R37H	.	.	177	56	115	0	.	227
TRIB2	28951	bcgsc.ca	37	2	12858687	12858687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TRIB2	NM_021643	exon1	c.A254G	p.E85G	.	.	226	7	228	0	.	333
TSC1	7248	bcgsc.ca	37	9	135781279	135781279	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TSC1	NM_000368	exon15	c.T1686C	p.A562A	.	.	140	4	127	0	.	1906
TTN	7273	bcgsc.ca	37	2	179639820	179639820	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TTN	NM_001267550	exon29	c.A6618G	p.K2206K	.	.	211	7	236	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179440745	179440745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TTN	NM_001267550	exon326	c.C70114G	p.P23372A	.	.	56	13	68	0	.	636
TUBA3C	7278	broad.mit.edu	37	13	19751492	19751492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TUBA3C	NM_006001	exon4	c.G631T	p.D211Y	.	.	207	6	374	1	.	95
TUBA8	51807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18604433	18604433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TUBA8	NM_018943	exon2	c.G191A	p.R64Q	.	.	203	80	189	1	.	90
TULP4	56995	bcgsc.ca	37	6	158924570	158924570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	TULP4	NM_020245	exon13	c.T3875C	p.V1292A	.	.	73	4	85	0	.	91
UBA1	7317	broad.mit.edu	37	X	47061624	47061624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UBA1	NM_153280	exon9	c.A881G	p.Q294R	.	.	362	7	280	0	.	227
UBASH3A	53347	broad.mit.edu	37	21	43833213	43833213	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UBASH3A	NM_018961	exon4	c.C435T	p.A145A	.	.	44	3	56	0	.	93
UBR1	197131	bcgsc.ca	37	15	43256226	43256226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UBR1	NM_174916	exon42	c.A4607G	p.E1536G	.	.	78	4	98	0	.	91
UBXN8	7993	bcgsc.ca	37	8	30614348	30614348	+	RNA	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UBXN8	.	.	.	.	.	.	85	4	139	0	.	90
UMOD	7369	bcgsc.ca	37	16	20348049	20348049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UMOD	NM_003361	exon9	c.A1741G	p.T581A	.	.	77	4	67	0	.	92
UNC5D	137970	bcgsc.ca	37	8	35606113	35606113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UNC5D	NM_080872	exon12	c.T1835C	p.V612A	.	.	83	5	140	0	.	96
UPF3A	65110	bcgsc.ca	37	13	115067260	115067260	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UPF3A	NM_023011	exon9	c.A1062G	p.Q354Q	.	.	95	4	180	0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216073535	216073535	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	USH2A	NM_206933	exon40	c.G7476A	p.S2492S	.	.	83	19	71	0	.	115
USP25	29761	bcgsc.ca	37	21	17172122	17172122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	USP25	NM_013396	exon6	c.A602G	p.K201R	.	.	302	7	317	0	.	663
USP32	84669	bcgsc.ca	37	17	58343362	58343362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	USP32	NM_032582	exon8	c.A902G	p.K301R	.	.	84	4	94	0	.	704
USP54	159195	bcgsc.ca	37	10	75258613	75258613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	USP54	NM_152586	exon22	c.T4829C	p.L1610P	.	.	84	4	105	0	.	721
UVRAG	7405	bcgsc.ca	37	11	75827020	75827020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	UVRAG	NM_003369	exon14	c.A1358G	p.N453S	.	.	89	4	93	0	.	229
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77896666	77896666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VAT1L	NM_020927	exon4	c.T601A	p.C201S	.	.	137	39	133	0	.	90
VCAN	1462	bcgsc.ca	37	5	82817669	82817669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VCAN	NM_004385	exon7	c.T3544C	p.S1182P	.	.	132	5	127	1	.	238
VEPH1	79674	ucsc.edu;bcgsc.ca	37	3	157031412	157031412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VEPH1	NM_001167912	exon11	c.A2008G	p.K670E	.	.	40	4	41	0	.	155
VPS26A	9559	ucsc.edu;bcgsc.ca	37	10	70915569	70915569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VPS26A	NM_001035260	exon3	c.T155G	p.V52G	.	.	86	15	85	3	.	90
VPS53	55275	bcgsc.ca	37	17	440280	440280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VPS53	NM_001128159	exon18	c.T2003C	p.V668A	.	.	66	4	89	0	.	90
VWA3B	200403	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98744813	98744813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	VWA3B	NM_144992	exon6	c.G814T	p.A272S	.	.	112	23	151	1	.	139
WDFY2	115825	bcgsc.ca	37	13	52332349	52332349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	WDFY2	NM_052950	exon11	c.C1086A	p.F362L	.	.	96	4	197	0	.	90
WDFY3	23001	ucsc.edu	37	4	85762366	85762366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	WDFY3	NM_014991	exon6	c.G355A	p.E119K	.	.	79	13	95	3	.	93
WDR4	10785	bcgsc.ca	37	21	44296823	44296823	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	WDR4	NM_018669	exon2	c.A144G	p.Q48Q	.	.	117	5	113	0	.	91
WDR52	55779	bcgsc.ca	37	3	113114626	113114626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	WDR52	NM_001164496	exon15	c.T1861C	p.C621R	.	.	197	6	221	1	.	90
WWP1	11059	bcgsc.ca	37	8	87386348	87386348	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	WWP1	NM_007013	exon3	c.T69C	p.T23T	.	.	74	4	82	0	.	659
XBP1	7494	bcgsc.ca	37	22	29195046	29195046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	XBP1	NM_001079539	exon2	c.A323G	p.E108G	.	.	141	5	122	0	.	290
XDH	7498	broad.mit.edu;bcgsc.ca	37	2	31591508	31591508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	XDH	NM_000379	exon19	c.A1999G	p.I667V	.	.	200	6	181	0	.	158
YAP1	10413	bcgsc.ca	37	11	102033203	102033203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	YAP1	NM_001130145	exon3	c.A589G	p.T197A	.	.	65	4	63	0	.	659
YLPM1	56252	broad.mit.edu	37	14	75290974	75290974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	YLPM1	NM_019589	exon18	c.A6127G	p.S2043G	.	.	442	7	624	0	.	71
ZBED1	9189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	2407376	2407376	+	Missense_Mutation	SNP	G	G	A	rs199678782		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZBED1	NM_001171135	exon2	c.C1385T	p.T462M	.	.	387	84	319	0	G|0.999;A|0.001	40
ZBTB46	140685	bcgsc.ca	37	20	62384086	62384086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZBTB46	NM_025224	exon4	c.T1351C	p.C451R	.	.	56	5	44	0	.	154
ZBTB49	166793	bcgsc.ca	37	4	4303982	4303982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZBTB49	NM_145291	exon3	c.T419C	p.L140P	.	.	153	6	105	0	.	92
ZC3HC1	51530	bcgsc.ca	37	7	129658512	129658512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZC3HC1	NM_016478	exon10	c.T1501C	p.S501P	.	.	157	5	139	0	.	90
ZCCHC4	29063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	25351159	25351159	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZCCHC4	NM_024936	exon7	c.G805T	p.E269X	.	.	321	41	228	0	.	70
ZCCHC6	79670	bcgsc.ca	37	9	88918019	88918019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZCCHC6	NM_024617	exon25	c.A4076G	p.D1359G	.	.	131	5	137	0	.	92
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	77203532	77203532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_015336	exon5	c.T438C	p.Y146Y	.	.	90	26	71	0	.	.
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57466174	57466174	+	Silent	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZDHHC5	NM_015457	exon11	c.C1266T	p.S422S	.	.	117	19	111	0	.	226
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77765482	77765482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZFHX4	NM_024721	exon10	c.C6325T	p.L2109F	.	.	158	37	135	0	.	98
ZFYVE19	84936	bcgsc.ca	37	15	41102296	41102296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZFYVE19	NM_001077268	exon5	c.A599G	p.E200G	.	.	122	5	91	0	.	91
ZNF101	94039	bcgsc.ca	37	19	19790440	19790440	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF101	NM_033204	exon4	c.A642G	p.K214K	.	.	71	4	53	0	.	92
ZNF197	10168	bcgsc.ca	37	3	44685486	44685486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF197	NM_006991	exon6	c.A2864G	p.E955G	.	.	187	6	148	0	.	230
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	22155549	22155549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF208	NM_007153	exon4	c.A2287G	p.T763A	.	.	46	16	47	0	.	7
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156821	22156821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF208	NM_007153	exon4	c.A1015G	p.K339E	.	.	131	24	96	0	.	7
ZNF449	203523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134494230	134494230	+	Silent	SNP	G	G	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF449	NM_152695	exon5	c.G786A	p.L262L	.	.	476	71	439	0	.	132
ZNF470	388566	bcgsc.ca	37	19	57089729	57089729	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF470	NM_001001668	exon6	c.A1932G	p.T644T	.	.	76	4	92	0	.	92
ZNF540	163255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38102620	38102620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF540	NM_152606	exon5	c.A439G	p.K147E	.	.	183	73	168	0	.	153
ZNF649	65251	broad.mit.edu	37	19	52394874	52394874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF649	NM_023074	exon5	c.A515G	p.H172R	.	.	1038	13	814	1	.	92
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	88964869	88964869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZNF804B	NM_181646	exon4	c.C2573A	p.S858X	.	.	152	21	130	0	.	101
ZNF844	284391	bcgsc.ca	37	19	12187045	12187045	+	Silent	SNP	A	A	G	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001136501	exon4	c.A1110G	p.E370E	.	.	68	4	71	0	.	.
ZNF850	342892	ucsc.edu;bcgsc.ca	37	19	37239874	37239874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	NM_001193552	exon5	c.C2068A	p.Q690K	.	.	22	4	26	0	.	.
ZZEF1	23140	bcgsc.ca	37	17	3978415	3978415	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZZEF1	NM_015113	exon23	c.A3459G	p.K1153K	.	.	151	5	257	0	.	93
ZZZ3	26009	bcgsc.ca	37	1	78050289	78050289	+	Silent	SNP	T	T	C	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	ZZZ3	NM_015534	exon6	c.A1557G	p.Q519Q	.	.	81	4	141	0	.	157
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223567608	223567609	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	p.L264P	.	.	.	.	.	.	.	
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101666978	101666979	+	Missense_Mutation	DNP	CC	CC	GA	novel		TCGA-DD-A118-01A-11D-A12Z-10	TCGA-DD-A118-11A-11D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	48d84dbb-ab16-4a9d-8a01-2700d8c457d6	c8499913-0f62-4b43-a7d4-49fb5e292768	.	.	.	.	.	p.D253H	.	.	.	.	.	.	.	
