Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	hgsc.bcm.edu	37	19	58863849	58863849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	A1BG	NM_130786	exon4	c.T413C	p.V138A	.	.	78	4	67	0	.	90
AADAC	13	hgsc.bcm.edu	37	3	151545789	151545789	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AADAC	NM_001086	exon5	c.T1029C	p.D343D	.	.	98	4	164	0	.	280
AAK1	22848	hgsc.bcm.edu	37	2	69741753	69741753	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AAK1	NM_014911	exon13	c.G1626A	p.Q542Q	.	.	134	2	148	0	.	333
ABCA7	10347	hgsc.bcm.edu	37	19	1043779	1043779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA7	NM_019112	exon10	c.A986G	p.E329G	.	.	62	8	76	0	.	98
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66873815	66873815	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon31	c.A3924G	p.L1308L	.	.	62	4	95	0	.	93
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66890418	66890418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon21	c.A2812G	p.R938G	.	.	80	4	71	0	.	93
ABCC1	4363	ucsc.edu;bcgsc.ca	37	16	16228238	16228238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCC1	NM_004996	exon28	c.A3998G	p.K1333R	.	.	51	5	62	0	.	94
ABCD1	215	ucsc.edu	37	X	152991269	152991269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCD1	NM_000033	exon1	c.T548C	p.V183A	.	.	50	4	51	0	.	130
ABCF1	23	hgsc.bcm.edu	37	6	30550931	30550931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCF1	NM_001025091	exon10	c.G881A	p.R294H	.	.	89	4	77	0	.	92
ABCF2	10061	hgsc.bcm.edu	37	7	150912710	150912710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCF2	NM_005692	exon13	c.G1510T	p.G504C	.	.	99	4	122	0	.	90
ACE	1636	hgsc.bcm.edu	37	17	61560881	61560881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACE	NM_000789	exon10	c.A1548G	p.G516G	.	.	106	5	156	0	.	94
ACO2	50	hgsc.bcm.edu	37	22	41913597	41913597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACO2	NM_001098	exon7	c.A902G	p.H301R	.	.	78	4	77	0	.	290
ACOX3	8310	bcgsc.ca	37	4	8407721	8407721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACOX3	NM_001101667	exon7	c.A737G	p.D246G	.	.	73	5	120	1	.	90
ACSL1	2180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	185678997	185678997	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACSL1	NM_001995	exon19	c.G1860A	p.S620S	.	.	117	34	211	1	.	92
ACVR1	90	hgsc.bcm.edu	37	2	158636913	158636913	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACVR1	NM_001105	exon4	c.A267G	p.Q89Q	.	.	86	4	102	0	.	980
ADAMTS6	11174	hgsc.bcm.edu;bcgsc.ca	37	5	64510631	64510631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADAMTS6	NM_197941	exon20	c.T2565C	p.T855T	.	.	110	5	119	0	.	226
ADAMTS9	56999	hgsc.bcm.edu	37	3	64524966	64524966	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADAMTS9	NM_182920	exon37	c.T5526C	p.T1842T	.	.	88	5	105	0	.	230
ADCY6	112	hgsc.bcm.edu	37	12	49168824	49168824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADCY6	NM_020983	exon12	c.T1994C	p.V665A	.	.	85	5	100	0	.	90
ADCY9	115	hgsc.bcm.edu;bcgsc.ca	37	16	4164949	4164949	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADCY9	NM_001116	exon2	c.C495A	p.T165T	.	.	50	4	70	0	.	139
ADRA1B	147	hgsc.bcm.edu	37	5	159399016	159399016	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADRA1B	NM_000679	exon2	c.G1080A	p.V360V	.	.	89	4	83	0	.	522
AFF2	2334	hgsc.bcm.edu	37	X	148069086	148069086	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AFF2	NM_002025	exon20	c.A3813G	p.K1271K	.	.	97	4	124	0	.	135
AKAP17A	8227	hgsc.bcm.edu	37	X	1712975	1712975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP17A	NM_005088	exon2	c.T620C	p.F207S	.	.	93	4	87	0	.	40
AKAP6	9472	hgsc.bcm.edu	37	14	33293955	33293955	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP6	NM_004274	exon13	c.A6936G	p.K2312K	.	.	111	5	137	0	.	733
AKAP8	10270	hgsc.bcm.edu	37	19	15472941	15472941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP8	NM_005858	exon10	c.A1282G	p.K428E	.	.	74	4	77	0	.	290
AKAP9	10142	hgsc.bcm.edu;bcgsc.ca	37	7	91706167	91706167	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP9	NM_005751	exon29	c.6613-2A>G	.	.	.	121	5	171	0	.	755
AKNAD1	254268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109394791	109394791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKNAD1	NM_152763	exon2	c.C496T	p.P166S	.	.	294	14	412	0	.	93
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74274385	74274385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALB	NM_000477	exon4	c.T345C	p.C115C	.	.	118	5	212	0	.	96
ALDH1B1	219	bcgsc.ca	37	9	38397021	38397021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH1B1	NM_000692	exon2	c.A1276G	p.K426E	.	.	142	5	224	0	.	227
ALDH4A1	8659	hgsc.bcm.edu	37	1	19212052	19212052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH4A1	NM_003748	exon5	c.A368G	p.D123G	.	.	50	4	64	0	.	226
ALDH8A1	64577	hgsc.bcm.edu	37	6	135253949	135253949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH8A1	NM_022568	exon5	c.A814G	p.I272V	.	.	77	4	112	0	.	94
ALDH8A1	64577	hgsc.bcm.edu;bcgsc.ca	37	6	135239987	135239987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH8A1	NM_022568	exon7	c.A1030G	p.R344G	.	.	106	6	124	0	.	94
ALG14	199857	hgsc.bcm.edu	37	1	95448692	95448692	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALG14	NM_144988	exon4	c.T591C	p.V197V	.	.	100	4	162	0	.	226
ALOX5	240	hgsc.bcm.edu	37	10	45939627	45939627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALOX5	NM_000698	exon13	c.A1738G	p.K580E	.	.	74	4	109	0	.	228
ALOXE3	59344	hgsc.bcm.edu	37	17	8011902	8011902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALOXE3	NM_001165960	exon13	c.T1964C	p.V655A	.	.	58	4	82	0	.	229
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46722798	46722798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALS2CL	NM_001190707	exon13	c.G1374A	p.R458R	.	.	152	53	211	0	.	155
AMBRA1	55626	hgsc.bcm.edu	37	11	46456589	46456589	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AMBRA1	NM_017749	exon15	c.2363-2A>G	.	.	.	96	4	78	0	.	136
AMER2	219287	hgsc.bcm.edu	37	13	25744544	25744544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152704	exon1	c.A1214G	p.K405R	.	.	45	4	60	0	.	.
AMOT	154796	hgsc.bcm.edu	37	X	112021881	112021881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AMOT	NM_001113490	exon11	c.T3169C	p.F1057L	.	.	79	4	89	0	.	131
ANKDD1A	348094	hgsc.bcm.edu	37	15	65219192	65219192	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANKDD1A	NM_182703	exon6	c.A564G	p.K188K	.	.	63	4	112	0	.	69
ANKRD2	26287	hgsc.bcm.edu;bcgsc.ca	37	10	99342105	99342105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANKRD2	NM_020349	exon7	c.A769G	p.T257A	.	.	65	5	113	0	.	90
ANLN	54443	hgsc.bcm.edu	37	7	36447349	36447349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANLN	NM_018685	exon5	c.A880T	p.T294S	.	.	119	7	127	0	.	517
AP1G1	164	bcgsc.ca	37	16	71790002	71790002	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP1G1	NM_001030007	exon13	c.A1158G	p.K386K	.	.	228	6	293	0	.	92
AP2B1	163	hgsc.bcm.edu;bcgsc.ca	37	17	33925250	33925250	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP2B1	NM_001282	exon3	c.A39G	p.G13G	.	.	85	4	110	0	.	91
AP3B1	8546	hgsc.bcm.edu	37	5	77563357	77563357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP3B1	NM_003664	exon2	c.A191G	p.K64R	.	.	88	4	94	0	.	90
AP4B1	10717	bcgsc.ca	37	1	114439012	114439012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP4B1	NM_006594	exon9	c.T1378C	p.F460L	.	.	129	5	172	0	.	93
AP5Z1	9907	hgsc.bcm.edu	37	7	4825066	4825066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_014855	exon8	c.T952C	p.S318P	.	.	55	4	61	0	.	.
API5	8539	bcgsc.ca	37	11	43352072	43352072	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	API5	NM_006595	exon11	c.C1236T	p.V412V	.	.	171	6	162	0	.	136
APOBEC1	339	hgsc.bcm.edu;bcgsc.ca	37	12	7805229	7805229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOBEC1	NM_001644	exon3	c.T247C	p.S83P	.	.	64	4	94	0	.	226
APOL3	80833	hgsc.bcm.edu	37	22	36537572	36537572	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOL3	NM_145640	exon3	c.C885A	p.I295I	.	.	83	4	91	0	.	90
APOM	55937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31623826	31623826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOM	NM_019101	exon1	c.A83C	p.Q28P	.	.	208	41	158	0	.	90
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	148802995	148802995	+	Nonsense_Mutation	SNP	G	G	T	rs138388284	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon10	c.G946T	p.G316X	.	.	110	38	188	0	G|1.000;A|0.000	229
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148984403	148984403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon21	c.C2132A	p.P711H	.	.	131	30	148	0	.	229
ARHGAP28	79822	bcgsc.ca	37	18	6889915	6889915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP28	NM_001010000	exon12	c.T1088C	p.I363T	.	.	105	4	111	0	.	91
ARHGAP30	257106	hgsc.bcm.edu	37	1	161019075	161019075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP30	NM_001025598	exon12	c.A1736G	p.E579G	.	.	108	5	68	0	.	25
ARID5A	10865	hgsc.bcm.edu	37	2	97216921	97216921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARID5A	NM_212481	exon7	c.A656G	p.Q219R	.	.	93	4	122	0	.	226
ARRDC4	91947	hgsc.bcm.edu	37	15	98512600	98512600	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARRDC4	NM_183376	exon5	c.T873C	p.Y291Y	.	.	89	4	121	0	.	90
ARSH	347527	hgsc.bcm.edu	37	X	2928166	2928166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARSH	NM_001011719	exon2	c.T188C	p.L63P	.	.	106	5	124	0	.	130
ASAP2	8853	hgsc.bcm.edu	37	2	9531316	9531316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASAP2	NM_003887	exon23	c.A2509G	p.T837A	.	.	99	4	113	0	.	90
ASCL3	56676	bcgsc.ca	37	11	8959325	8959325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASCL3	NM_020646	exon2	c.A384G	p.R128R	.	.	165	5	192	0	.	90
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25965337	25965337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASXL2	NM_018263	exon12	c.G3869C	p.S1290T	.	.	138	10	187	0	.	23
ATL3	25923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63396832	63396832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATL3	NM_015459	exon13	c.G1585T	p.A529S	.	.	249	102	277	0	.	69
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	90014010	90014010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATP2B1	NM_001001323	exon10	c.A1595G	p.E532G	.	.	96	4	139	0	.	516
ATR	545	hgsc.bcm.edu	37	3	142226796	142226796	+	Missense_Mutation	SNP	G	G	T	rs139135398	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon28	c.C5008A	p.Q1670K	.	.	92	4	111	0	G|1.000;C|0.000	1139
ATR	545	hgsc.bcm.edu	37	3	142272231	142272231	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ATR,upper_arm,malignant_melanoma,-1	ATR	NM_001184	exon13	c.A2643G	p.K881K	.	.	98	4	112	0	.	1139
ATR	545	hgsc.bcm.edu;bcgsc.ca	37	3	142226823	142226823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon28	c.T4981C	p.F1661L	.	.	114	5	139	0	.	1139
ATRNL1	26033	hgsc.bcm.edu	37	10	116931101	116931101	+	Silent	SNP	C	C	T	rs113157696	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATRNL1	NM_001276282	exon8	c.C1399T	p.L467L	.	.	128	1	171	0	C|0.500;T|0.500	96
AUNIP	79000	hgsc.bcm.edu	37	1	26162302	26162302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_024037	exon3	c.T256C	p.S86P	.	.	96	4	139	0	.	.
AURKB	9212	bcgsc.ca	37	17	8111067	8111067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	AURKB,NS,carcinoma,0	AURKB	NM_004217	exon3	c.T140C	p.V47A	.	.	148	5	177	1	.	1508
AVL9	23080	hgsc.bcm.edu	37	7	32612832	32612832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AVL9	NM_015060	exon12	c.A1372G	p.I458V	.	.	102	5	98	0	.	90
BLM	641	hgsc.bcm.edu	37	15	91328233	91328233	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BLM	NM_000057	exon14	c.T2745C	p.A915A	.	.	84	4	99	0	.	664
BMP5	653	bcgsc.ca	37	6	55739609	55739609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BMP5	NM_021073	exon1	c.T55C	p.W19R	.	.	161	6	146	0	.	516
BMP8A	353500	hgsc.bcm.edu	37	1	39991422	39991422	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BMP8A	NM_181809	exon7	c.C1161A	p.I387I	.	.	85	4	99	0	.	90
BRCA2	675	hgsc.bcm.edu;bcgsc.ca	37	13	32914823	32914823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BRCA2	NM_000059	exon11	c.A6331G	p.K2111E	.	.	96	4	102	0	.	3153
BRD9	65980	hgsc.bcm.edu	37	5	864653	864653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BRD9	NM_023924	exon16	c.A1724G	p.Q575R	.	.	63	4	70	0	.	90
BSND	7809	hgsc.bcm.edu	37	1	55473990	55473990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BSND	NM_057176	exon4	c.A652G	p.R218G	.	.	90	4	99	0	.	92
C10orf12	26148	hgsc.bcm.edu	37	10	98743214	98743214	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C10orf12	NM_015652	exon1	c.C2067A	p.T689T	.	.	57	4	84	0	.	92
C15orf41	84529	hgsc.bcm.edu	37	15	37001438	37001438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C15orf41	NM_001130010	exon9	c.C559A	p.R187S	.	.	93	4	153	0	.	46
C15orf55	256646	hgsc.bcm.edu	37	15	34640689	34640689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C15orf55	NM_175741	exon2	c.G536A	p.W179X	.	.	56	4	63	0	.	206
C17orf64	124773	hgsc.bcm.edu;bcgsc.ca	37	17	58508620	58508620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C17orf64	NM_181707	exon6	c.A704G	p.E235G	.	.	84	5	109	0	.	271
C18orf54	162681	hgsc.bcm.edu;bcgsc.ca	37	18	51889221	51889221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C18orf54	NM_173529	exon4	c.A670G	p.K224E	.	.	81	4	101	0	.	92
C19orf21	126353	hgsc.bcm.edu;bcgsc.ca	37	19	758323	758323	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C19orf21	NM_173481	exon2	c.T1377C	p.T459T	.	.	81	4	75	0	.	91
C19orf33	64073	hgsc.bcm.edu	37	19	38795590	38795590	+	Missense_Mutation	SNP	G	G	A	rs199853866		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C19orf33	NM_033520	exon4	c.G307A	p.E103K	.	.	185	15	178	0	.	90
C1orf141	400757	bcgsc.ca	37	1	67591541	67591541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C1orf141	NM_001276352	exon4	c.A127G	p.T43A	.	.	110	5	169	1	.	91
C1orf173	127254	hgsc.bcm.edu	37	1	75037860	75037860	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C1orf173	NM_001002912	exon14	c.A3534G	p.G1178G	.	.	246	5	365	0	.	94
C1orf173	127254	hgsc.bcm.edu	37	1	75037864	75037864	+	Missense_Mutation	SNP	C	C	T	rs201939582	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C1orf173	NM_001002912	exon14	c.G3530A	p.G1177E	.	.	250	18	360	0	C|0.992;T|0.008	94
C1QTNF7	114905	hgsc.bcm.edu	37	4	15444246	15444246	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C1QTNF7	NM_001135170	exon3	c.T714C	p.A238A	.	.	90	4	95	0	.	90
C20orf194	25943	bcgsc.ca	37	20	3298958	3298958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C20orf194	NM_001009984	exon17	c.T1446C	p.S482S	.	.	155	7	206	1	.	68
C21orf2	755	hgsc.bcm.edu	37	21	45755646	45755646	+	Silent	SNP	C	C	A	rs146104157	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C21orf2	NM_004928	exon3	c.G138T	p.T46T	.	.	100	4	139	0	C|0.997;T|0.003	90
C21orf62	56245	hgsc.bcm.edu;bcgsc.ca	37	21	34166650	34166650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C21orf62	NM_001162495	exon4	c.A83G	p.K28R	.	.	98	5	140	0	.	91
C22orf28	51493	hgsc.bcm.edu	37	22	32795593	32795593	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C22orf28	NM_014306	exon6	c.T651C	p.P217P	.	.	124	5	129	0	.	90
C2CD3	26005	hgsc.bcm.edu;bcgsc.ca	37	11	73824846	73824846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2CD3	NM_015531	exon11	c.T1822C	p.S608P	.	.	76	5	90	0	.	75
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27802654	27802654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.T3215C	p.L1072P	.	.	108	5	142	0	.	67
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27803186	27803186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.A3747G	p.R1249R	.	.	116	5	161	0	.	67
C3AR1	719	hgsc.bcm.edu	37	12	8212440	8212440	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C3AR1	NM_004054	exon2	c.T342C	p.T114T	.	.	81	4	162	0	.	227
C4orf22	255119	hgsc.bcm.edu	37	4	81283933	81283933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C4orf22	NM_152770	exon2	c.T137C	p.V46A	.	.	86	4	116	0	.	93
C6orf211	79624	hgsc.bcm.edu;bcgsc.ca	37	6	151789976	151789976	+	Missense_Mutation	SNP	T	T	C	rs140306203	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C6orf211	NM_024573	exon5	c.T1057C	p.Y353H	.	.	93	4	202	0	T|1.000;C|0.000	90
C7orf25	79020	hgsc.bcm.edu;bcgsc.ca	37	7	42950513	42950513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C7orf25	NM_001099858	exon2	c.A161G	p.N54S	.	.	70	4	103	0	.	69
C9orf57	138240	hgsc.bcm.edu	37	9	74674293	74674293	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001128618	exon2	c.T21C	p.S7S	.	.	86	4	108	0	.	.
C9orf72	203228	hgsc.bcm.edu;bcgsc.ca	37	9	27556627	27556627	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C9orf72	NM_018325	exon8	c.A1023G	p.R341R	.	.	119	5	208	0	.	517
CAAP1	79886	bcgsc.ca	37	9	26887353	26887353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_024828	exon2	c.A462G	p.I154M	.	.	103	4	167	0	.	.
CACNA1B	774	hgsc.bcm.edu	37	9	140773613	140773613	+	Splice_Site	SNP	T	T	A	rs201604190		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CACNA1B,NS,carcinoma,0	CACNA1B	NM_001243812	exon2	c.390+2T>A	.	.	.	29	4	52	1	.	138
CAD	790	hgsc.bcm.edu	37	2	27458485	27458485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAD	NM_004341	exon25	c.T4051C	p.F1351L	.	.	112	6	107	0	.	295
CAMTA2	23125	bcgsc.ca	37	17	4889555	4889555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAMTA2	NM_001171168	exon2	c.T32C	p.L11P	.	.	46	4	118	14	.	91
CAMTA2	23125	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	4883056	4883056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAMTA2	NM_001171167	exon9	c.A1630G	p.I544V	.	.	42	4	91	0	.	91
CAND2	23066	hgsc.bcm.edu	37	3	12854590	12854590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAND2	NM_001162499	exon6	c.A859G	p.R287G	.	.	90	4	116	0	.	72
CAPRIN1	4076	bcgsc.ca	37	11	34098116	34098116	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAPRIN1	NM_203364	exon6	c.A615G	p.E205E	.	.	132	5	132	0	.	91
CARD10	29775	hgsc.bcm.edu	37	22	37888763	37888763	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CARD10	NM_014550	exon17	c.G2523T	p.L841L	.	.	92	5	108	0	.	662
CARD11	84433	hgsc.bcm.edu	37	7	2956991	2956991	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CARD11	NM_032415	exon20	c.C2636A	p.S879X	.	.	57	4	60	0	.	870
CASP6	839	hgsc.bcm.edu	37	4	110612018	110612018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASP6	NM_001226	exon6	c.T631C	p.S211P	.	.	104	5	105	0	.	660
CASQ1	844	hgsc.bcm.edu	37	1	160160793	160160793	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASQ1	NM_001231	exon1	c.A252G	p.Q84Q	.	.	109	5	88	0	.	90
CASR	846	ucsc.edu	37	3	121980761	121980761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASR	NM_001178065	exon4	c.G879T	p.W293C	.	.	70	12	106	12	.	97
CASS4	57091	hgsc.bcm.edu;bcgsc.ca	37	20	55025710	55025710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASS4	NM_020356	exon4	c.T617C	p.L206P	.	.	91	5	120	0	.	25
CASZ1	54897	hgsc.bcm.edu	37	1	10699170	10699170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASZ1	NM_001079843	exon21	c.C5109G	p.D1703E	.	.	47	6	43	0	.	113
CBLC	23624	ucsc.edu	37	19	45284301	45284301	+	Nonsense_Mutation	SNP	G	G	T	rs140442555	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CBLC	NM_001130852	exon2	c.G493T	p.G165X	.	.	37	4	54	0	G|1.000;A|0.000	849
CCDC109B	55013	hgsc.bcm.edu	37	4	110580168	110580168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC109B	NM_017918	exon2	c.T101C	p.V34A	.	.	103	6	182	0	.	90
CCDC116	164592	hgsc.bcm.edu	37	22	21990761	21990761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC116	NM_152612	exon5	c.T1244C	p.L415P	.	.	68	4	92	0	.	92
CCDC121	79635	hgsc.bcm.edu	37	2	27851424	27851424	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC121	NM_001142683	exon1	c.C207T	p.P69P	.	.	123	5	153	0	.	68
CCDC146	57639	hgsc.bcm.edu	37	7	76883831	76883831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC146	NM_020879	exon5	c.A458G	p.E153G	.	.	40	4	52	0	.	70
CCDC17	149483	hgsc.bcm.edu	37	1	46086573	46086573	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC17	NM_001114938	exon12	c.1599+2T>C	.	.	.	88	4	118	0	.	23
CCDC180	0	hgsc.bcm.edu;bcgsc.ca	37	9	100074426	100074426	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_020893	exon4	c.C424A	p.R142R	.	.	73	4	95	0	.	.
CCDC24	149473	hgsc.bcm.edu;bcgsc.ca	37	1	44461509	44461509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC24	NM_152499	exon8	c.T682C	p.C228R	.	.	86	4	116	0	.	90
CCDC37	348807	hgsc.bcm.edu	37	3	126152005	126152005	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC37	NM_182628	exon14	c.A1380G	p.K460K	.	.	100	4	113	0	.	92
CCDC66	285331	hgsc.bcm.edu	37	3	56650054	56650054	+	Missense_Mutation	SNP	T	T	C	rs111934125		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC66	NM_001141947	exon13	c.T1816C	p.S606P	.	.	174	11	212	0	C|1.000;|0.000	135
CCER1	196477	hgsc.bcm.edu;ucsc.edu	37	12	91348403	91348403	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152638	exon1	c.T117C	p.H39H	.	.	47	5	34	0	.	.
CCL5	6352	hgsc.bcm.edu	37	17	34205643	34205643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCL5	NM_002985	exon2	c.A77G	p.Y26C	.	.	75	4	112	0	.	90
CCM2	83605	hgsc.bcm.edu;bcgsc.ca	37	7	45077891	45077891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCM2	NM_001029835	exon2	c.G133T	p.G45C	.	.	71	4	93	0	.	90
CCNA2	890	hgsc.bcm.edu	37	4	122738818	122738818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCNA2	NM_001237	exon8	c.A1274G	p.N425S	.	.	86	4	104	0	.	848
CCNB3	85417	hgsc.bcm.edu	37	X	50053332	50053332	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCNB3	NM_033031	exon5	c.A2163G	p.E721E	.	.	176	7	194	0	.	482
CCNF	899	hgsc.bcm.edu	37	16	2503452	2503452	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCNF	NM_001761	exon15	c.A1629G	p.T543T	.	.	65	4	70	0	.	658
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40831707	40831707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCR10	NM_016602	exon2	c.G953A	p.R318H	.	.	63	20	59	0	.	522
CD101	9398	hgsc.bcm.edu	37	1	117552527	117552527	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CD101	NM_001256109	exon2	c.A99G	p.R33R	.	.	84	4	113	0	.	94
CD44	960	hgsc.bcm.edu	37	11	35222635	35222635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CD44	NM_000610	exon8	c.C929T	p.T310I	.	.	67	4	62	0	.	227
CD97	976	hgsc.bcm.edu	37	19	14516617	14516617	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CD97	NM_078481	exon14	c.C1687T	p.L563L	.	.	85	4	107	0	.	570
CDC45	8318	hgsc.bcm.edu;bcgsc.ca	37	22	19502321	19502321	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDC45	NM_001178010	exon15	c.C1363T	p.L455L	.	.	59	4	74	0	.	227
CDH18	1016	hgsc.bcm.edu;bcgsc.ca	37	5	19544066	19544066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDH18	NM_001167667	exon9	c.T1302C	p.D434D	.	.	114	6	169	0	.	159
CDH23	64072	bcgsc.ca	37	10	73472509	73472509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDH23	NM_022124	exon27	c.T3308C	p.L1103P	.	.	169	6	201	0	.	563
CDK5RAP2	55755	bcgsc.ca	37	9	123152062	123152062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDK5RAP2	NM_018249	exon37	c.T5582C	p.V1861A	.	.	117	5	169	1	.	229
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123156882	123156882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDK5RAP2	NM_018249	exon36	c.A5486T	p.H1829L	.	.	252	35	319	0	.	229
CDRT1	374286	bcgsc.ca	37	17	15522451	15522451	+	Missense_Mutation	SNP	C	C	A	rs76061382		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDRT1	NM_006382	exon1	c.G376T	p.A126S	.	.	348	54	676	76	.	68
CDYL	9425	hgsc.bcm.edu	37	6	4892284	4892284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDYL	NM_004824	exon2	c.A362G	p.K121R	.	.	92	4	87	0	.	90
CEACAM20	125931	hgsc.bcm.edu	37	19	45015089	45015089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEACAM20	NM_001102597	exon12	c.A1736G	p.E579G	.	.	124	5	137	0	.	67
CEBPA	1050	hgsc.bcm.edu	37	19	33793069	33793069	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CEBPA,NS,haematopoietic_neoplasm,-1	CEBPA	NM_004364	exon1	c.C252T	p.H84H	.	.	74	4	66	0	.	7558
CELSR2	1952	hgsc.bcm.edu	37	1	109805547	109805547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CELSR2	NM_001408	exon7	c.A4664G	p.H1555R	.	.	94	4	111	0	.	526
CEP350	9857	bcgsc.ca	37	1	180068101	180068101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEP350	NM_014810	exon37	c.A9170G	p.D3057G	.	.	233	8	176	0	.	26
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134270790	134270790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEP63	NM_025180	exon13	c.C1403T	p.S468L	.	.	93	4	83	0	.	493
CERK	64781	bcgsc.ca	37	22	47091179	47091179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CERK	NM_022766	exon9	c.A977G	p.E326G	.	.	59	4	72	0	.	251
CERKL	375298	bcgsc.ca	37	2	182430841	182430841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CERKL	NM_001030311	exon4	c.A621G	p.E207E	.	.	273	7	276	2	.	228
CFL1	1072	broad.mit.edu	37	11	65623416	65623416	+	Missense_Mutation	SNP	A	A	G	rs11550149		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CFL1	NM_005507	exon2	c.T301C	p.F101L	.	.	193	6	206	0	.	90
CFTR	1080	hgsc.bcm.edu;bcgsc.ca	37	7	117232660	117232660	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CFTR	NM_000492	exon14	c.T2439C	p.S813S	.	.	61	4	83	0	.	518
CGREF1	10669	hgsc.bcm.edu	37	2	27325406	27325406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CGREF1	NM_001166239	exon3	c.A134G	p.Q45R	.	.	74	4	68	0	.	91
CHAF1A	10036	hgsc.bcm.edu	37	19	4409173	4409173	+	Missense_Mutation	SNP	A	A	G	rs148067278	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHAF1A	NM_005483	exon3	c.A377G	p.Q126R	.	.	93	5	122	0	A|0.998;G|0.002	92
CHAT	1103	hgsc.bcm.edu	37	10	50830196	50830196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHAT	NM_020549	exon5	c.G752T	p.S251I	.	.	100	4	147	0	.	514
CHGB	1114	hgsc.bcm.edu	37	20	5903053	5903053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHGB	NM_001819	exon4	c.A263G	p.D88G	.	.	116	5	121	0	.	96
CHTF8	54921	hgsc.bcm.edu;bcgsc.ca	37	16	69154536	69154536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHTF8	NM_001039690	exon4	c.T158C	p.I53T	.	.	79	4	90	0	.	87
CILP2	148113	hgsc.bcm.edu	37	19	19650506	19650506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CILP2	NM_153221	exon2	c.A83G	p.E28G	.	.	99	4	105	0	.	91
CILP	8483	hgsc.bcm.edu	37	15	65499173	65499173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CILP	NM_003613	exon4	c.A371G	p.Q124R	.	.	44	3	60	0	.	97
CISD1	55847	hgsc.bcm.edu;bcgsc.ca	37	10	60047332	60047332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CISD1	NM_018464	exon3	c.T249C	p.C83C	.	.	99	4	134	0	.	90
CLASP1	23332	hgsc.bcm.edu;bcgsc.ca	37	2	122205082	122205082	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLASP1	NM_001207051	exon19	c.T1743C	p.A581A	.	.	83	4	109	0	.	91
CLPTM1	1209	hgsc.bcm.edu	37	19	45493763	45493763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLPTM1	NM_001294	exon10	c.A1243G	p.T415A	.	.	123	5	131	0	.	91
CLSPN	63967	bcgsc.ca	37	1	36212578	36212578	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLSPN	NM_022111	exon15	c.A2643G	p.R881R	.	.	142	5	195	0	.	293
CMPK1	51727	hgsc.bcm.edu	37	1	47840605	47840605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CMPK1	NM_016308	exon4	c.A496G	p.R166G	.	.	91	4	135	0	.	116
CMYA5	202333	hgsc.bcm.edu	37	5	79029187	79029187	+	Silent	SNP	A	A	G	rs76025356	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CMYA5	NM_153610	exon2	c.A4599G	p.L1533L	.	.	78	4	96	0	A|0.995;G|0.005	77
CNBD1	168975	hgsc.bcm.edu;bcgsc.ca	37	8	88218281	88218281	+	Silent	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNBD1	NM_173538	exon5	c.A492C	p.P164P	.	.	113	5	63	0	.	3
CNGB1	1258	hgsc.bcm.edu;bcgsc.ca	37	16	57998104	57998104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNGB1	NM_001297	exon4	c.A220G	p.T74A	.	.	89	4	83	0	.	137
CNNM1	26507	hgsc.bcm.edu	37	10	101136951	101136951	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNNM1	NM_020348	exon7	c.C2316A	p.I772I	.	.	100	4	154	0	.	68
CNTN1	1272	hgsc.bcm.edu	37	12	41337846	41337846	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNTN1	NM_001256063	exon14	c.A1557G	p.G519G	.	.	74	4	132	0	.	1149
CNTNAP5	129684	hgsc.bcm.edu	37	2	125367485	125367485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNTNAP5	NM_130773	exon12	c.T1861C	p.C621R	.	.	42	4	71	0	.	524
COBL	23242	hgsc.bcm.edu	37	7	51085259	51085259	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon13	c.T3775C	p.L1259L	.	.	98	4	125	0	.	95
COBL	23242	hgsc.bcm.edu	37	7	51098573	51098573	+	Missense_Mutation	SNP	T	T	A	rs76265922	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon9	c.A1440T	p.E480D	.	.	157	7	200	0	T|0.988;A|0.012	95
COBL	23242	hgsc.bcm.edu;bcgsc.ca	37	7	51096495	51096495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon10	c.A2298G	p.K766K	.	.	86	5	150	0	.	95
COL1A2	1278	hgsc.bcm.edu	37	7	94057035	94057035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COL1A2	NM_000089	exon49	c.C3364A	p.P1122T	.	.	95	4	86	0	.	521
COL4A3	1285	hgsc.bcm.edu	37	2	228162401	228162401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COL4A3	NM_000091	exon42	c.G3577T	p.D1193Y	.	.	95	4	144	0	.	132
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130174346	130174346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_153264	exon37	c.T6626C	p.I2209T	.	.	277	38	301	0	.	.
COL9A3	1299	hgsc.bcm.edu	37	20	61460123	61460123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COL9A3	NM_001853	exon18	c.C908T	p.P303L	.	.	56	4	59	0	.	514
COPG1	22820	hgsc.bcm.edu	37	3	128984637	128984637	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_016128	exon14	c.1468+2T>C	.	.	.	96	4	123	0	.	.
CPM	1368	hgsc.bcm.edu	37	12	69326513	69326513	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CPM	NM_001005502	exon2	c.T105C	p.V35V	.	.	108	5	156	0	.	650
CPNE8	144402	bcgsc.ca	37	12	39268292	39268292	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CPNE8	NM_153634	exon2	c.A120G	p.T40T	.	.	242	7	289	0	.	91
CREB3L2	64764	hgsc.bcm.edu	37	7	137567210	137567210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CREB3L2	NM_194071	exon11	c.T1435C	p.S479P	.	.	122	5	115	0	.	92
CREBBP	1387	hgsc.bcm.edu	37	16	3799678	3799678	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CREBBP	NM_004380	exon21	c.T3786C	p.I1262I	.	.	123	5	114	0	.	1807
CRHR2	1395	hgsc.bcm.edu	37	7	30704769	30704769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CRHR2	NM_001202475	exon6	c.A541G	p.N181D	.	.	97	4	117	0	.	524
CRMP1	1400	broad.mit.edu	37	4	5827242	5827242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CRMP1	NM_001014809	exon13	c.C1948A	p.Q650K	.	.	184	6	297	1	.	92
CSF2RB	1439	hgsc.bcm.edu	37	22	37334252	37334252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CSF2RB	NM_000395	exon14	c.C2402T	p.A801V	.	.	51	4	54	0	.	93
CTCF	10664	hgsc.bcm.edu;bcgsc.ca	37	16	67644896	67644896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CTCF	NM_006565	exon3	c.T161C	p.V54A	.	.	56	4	80	0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	.	.	209	13	260	1	G|1.000;T|0.000	24361
CUL3	8452	bcgsc.ca	37	2	225400315	225400315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CUL3	NM_001257198	exon3	c.A326G	p.Q109R	.	.	144	5	199	0	.	229
CUX1	1523	hgsc.bcm.edu	37	7	101839938	101839938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CUX1	NM_001202543	exon15	c.A1280G	p.D427G	.	.	96	4	132	0	.	160
CXADR	1525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	18933790	18933790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXADR	NM_001207066	exon6	c.A829G	p.I277V	.	.	179	11	240	0	.	227
CXCR2P1	3580	ucsc.edu	37	2	218924109	218924109	+	RNA	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	27	4	30	0	.	.
CXCR7	57007	hgsc.bcm.edu	37	2	237489664	237489664	+	Missense_Mutation	SNP	G	G	T	rs143561143	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXCR7	NM_020311	exon2	c.G556T	p.V186F	.	.	89	4	85	0	G|0.999;A|0.001	1145
CXorf48	54967	hgsc.bcm.edu	37	X	134292208	134292208	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXorf48	NM_017863	exon4	c.A453G	p.L151L	.	.	98	4	97	0	.	130
CYB5RL	606495	hgsc.bcm.edu;bcgsc.ca	37	1	54640392	54640392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001031672	exon8	c.A848G	p.K283R	.	.	41	4	62	0	.	.
DAAM2	23500	hgsc.bcm.edu	37	6	39869662	39869662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DAAM2	NM_001201427	exon25	c.A3056G	p.E1019G	.	.	66	11	26	0	.	228
DACH2	117154	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	86069720	86069720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DACH2	NM_053281	exon10	c.A1567G	p.K523E	.	.	46	4	41	0	.	136
DBF4	10926	bcgsc.ca	37	7	87514315	87514315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DBF4	NM_006716	exon3	c.A241G	p.K81E	.	.	106	4	133	0	.	253
DCAF7	10238	broad.mit.edu;bcgsc.ca	37	17	61662583	61662583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DCAF7	NM_005828	exon7	c.T749C	p.L250P	.	.	205	7	212	0	.	91
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	30900222	30900222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DCDC5	NM_020869	exon19	c.C2582G	p.A861G	.	.	95	39	90	0	.	23
DDB1	1642	hgsc.bcm.edu;bcgsc.ca	37	11	61097525	61097525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DDB1	NM_001923	exon3	c.T232C	p.F78L	.	.	142	6	141	0	.	661
DDX1	1653	hgsc.bcm.edu	37	2	15746378	15746378	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DDX1	NM_004939	exon12	c.A807G	p.S269S	.	.	149	6	158	0	.	253
DENND4C	55667	hgsc.bcm.edu	37	9	19350716	19350716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DENND4C	NM_017925	exon23	c.A4187G	p.D1396G	.	.	70	5	94	0	.	92
DENND5B	160518	hgsc.bcm.edu;bcgsc.ca	37	12	31605207	31605207	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DENND5B	NM_144973	exon5	c.A1296G	p.K432K	.	.	88	4	144	0	.	24
DFNA5	1687	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	24756897	24756897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DFNA5	NM_001127453	exon5	c.T673C	p.Y225H	.	.	43	4	61	0	.	91
DHRS7	51635	hgsc.bcm.edu;bcgsc.ca	37	14	60619873	60619873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHRS7	NM_016029	exon4	c.T417C	p.G139G	.	.	102	5	123	0	.	91
DHX36	170506	hgsc.bcm.edu;bcgsc.ca	37	3	153998561	153998561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHX36	NM_020865	exon21	c.A2467G	p.I823V	.	.	88	4	109	0	.	226
DHX8	1659	bcgsc.ca	37	17	41585844	41585844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHX8	NM_004941	exon16	c.A2458G	p.M820V	.	.	153	5	205	0	.	229
DIO2	1734	bcgsc.ca	37	14	80669145	80669145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DIO2	.	.	.	.	.	.	95	4	134	1	.	22
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	83173062	83173062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DLG2	NM_001142699	exon27	c.T2804C	p.F935S	.	.	496	53	552	0	.	96
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32366626	32366626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DMD	NM_004006	exon38	c.A5345G	p.E1782G	.	.	74	5	106	0	.	265
DMXL1	1657	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118464996	118464996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DMXL1	NM_005509	exon10	c.A1193C	p.K398T	.	.	343	92	327	3	.	92
DNAAF1	123872	hgsc.bcm.edu	37	16	84199541	84199541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAAF1	NM_178452	exon7	c.A1016G	p.E339G	.	.	94	4	116	0	.	73
DNAH10	196385	bcgsc.ca	37	12	124371776	124371776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAH10	NM_207437	exon51	c.A8557G	p.N2853D	.	.	72	4	94	0	.	95
DNAH14	127602	hgsc.bcm.edu	37	1	225328438	225328438	+	Missense_Mutation	SNP	G	G	T	rs202118490		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAH14	NM_001373	exon27	c.G4172T	p.R1391I	.	.	28	4	21	0	.	23
DNAJC13	23317	hgsc.bcm.edu	37	3	132172158	132172158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAJC13	NM_015268	exon7	c.A554G	p.E185G	.	.	118	5	119	0	.	272
DNHD1	144132	hgsc.bcm.edu	37	11	6567219	6567219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNHD1	NM_144666	exon21	c.A5050G	p.T1684A	.	.	118	5	145	0	.	24
DNM1L	10059	hgsc.bcm.edu;bcgsc.ca	37	12	32854462	32854462	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNM1L	NM_012062	exon2	c.A216G	p.Q72Q	.	.	88	4	93	0	.	92
DOCK5	80005	hgsc.bcm.edu	37	8	25191685	25191685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DOCK5	NM_024940	exon21	c.A2165G	p.K722R	.	.	100	4	373	0	.	71
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62995054	62995054	+	Silent	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DOCK7	NM_001271999	exon30	c.A3675C	p.S1225S	.	.	119	12	161	0	.	92
DONSON	29980	hgsc.bcm.edu	37	21	34957031	34957031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DONSON	NM_017613	exon4	c.G650T	p.S217I	.	.	100	4	134	0	.	91
DPP3	10072	hgsc.bcm.edu;broad.mit.edu	37	11	66249887	66249887	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DPP3	NM_001256670	exon2	c.C216T	p.P72P	.	.	34	4	30	0	.	46
DSC3	1825	bcgsc.ca	37	18	28598068	28598068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DSC3	NM_024423	exon9	c.A1232G	p.E411G	.	.	211	6	237	1	.	94
DSP	1832	hgsc.bcm.edu	37	6	7581098	7581098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DSP	NM_004415	exon23	c.T4675C	p.F1559L	.	.	99	4	82	0	.	518
DSP	1832	hgsc.bcm.edu	37	6	7585893	7585893	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DSP	NM_004415	exon24	c.C8398T	p.L2800L	.	.	95	4	66	0	.	518
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49935632	49935632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DTWD1	NM_001144955	exon5	c.C772T	p.L258L	.	.	220	13	255	0	.	226
EDN1	1906	hgsc.bcm.edu	37	6	12296284	12296284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EDN1	NM_001955	exon5	c.A623G	p.N208S	.	.	109	4	86	0	.	91
EDN3	1908	hgsc.bcm.edu	37	20	57896094	57896094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EDN3	NM_207034	exon3	c.T388C	p.S130P	.	.	95	4	118	0	.	91
EFCAB14	9813	bcgsc.ca	37	1	47162290	47162290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_014774	exon4	c.T512C	p.L171P	.	.	118	5	142	1	.	.
EFCAB4B	84766	hgsc.bcm.edu	37	12	3788250	3788250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EFCAB4B	NM_001144958	exon6	c.A355G	p.S119G	.	.	69	4	130	0	.	92
EFTUD1	79631	bcgsc.ca	37	15	82533669	82533669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EFTUD1	NM_024580	exon5	c.T320C	p.V107A	.	.	97	4	157	1	.	91
EHBP1	23301	hgsc.bcm.edu	37	2	63086387	63086387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EHBP1	NM_015252	exon9	c.G823A	p.A275T	.	.	80	4	128	0	.	154
EHBP1L1	254102	hgsc.bcm.edu	37	11	65351097	65351097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EHBP1L1	NM_001099409	exon9	c.A2954G	p.E985G	.	.	83	4	80	0	.	69
ELP3	55140	hgsc.bcm.edu	37	8	28016144	28016144	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ELP3	NM_018091	exon12	c.A1251G	p.P417P	.	.	44	4	147	0	.	90
ELTD1	64123	hgsc.bcm.edu;bcgsc.ca	37	1	79385900	79385900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ELTD1	NM_022159	exon10	c.T1429C	p.F477L	.	.	75	4	91	0	.	24
EML5	161436	broad.mit.edu	37	14	89178788	89178788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EML5	NM_183387	exon10	c.T1484C	p.V495A	.	.	296	7	332	1	.	93
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77075681	77075681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ENGASE	NM_001042573	exon4	c.G527C	p.W176S	.	.	124	52	123	0	.	91
ENO2	2026	bcgsc.ca	37	12	7026226	7026226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ENO2	NM_001975	exon5	c.A265G	p.K89E	.	.	67	4	76	1	.	226
EP300	2033	hgsc.bcm.edu	37	22	41513713	41513713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EP300	NM_001429	exon2	c.A617G	p.Q206R	.	.	73	5	115	0	.	2011
EP400	57634	hgsc.bcm.edu	37	12	132549247	132549247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EP400	NM_015409	exon48	c.A8369G	p.Q2790R	.	.	64	4	64	0	.	520
EPG5	57724	bcgsc.ca	37	18	43528510	43528510	+	Silent	SNP	A	A	G	rs141397058		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EPG5	NM_020964	exon6	c.T1530C	p.F510F	.	.	91	4	101	1	A|0.999;G|0.000	580
EPS8L1	54869	hgsc.bcm.edu	37	19	55597306	55597306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EPS8L1	NM_133180	exon15	c.A1483G	p.S495G	.	.	100	4	68	0	.	115
ERAP1	51752	hgsc.bcm.edu;bcgsc.ca	37	5	96119656	96119656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERAP1	NM_001198541	exon14	c.A2072G	p.D691G	.	.	89	4	110	0	.	70
ERCC6	2074	hgsc.bcm.edu	37	10	50701191	50701191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERCC6	NM_000124	exon8	c.C1793G	p.T598R	.	.	98	4	138	0	.	1153
ERCC6	2074	hgsc.bcm.edu	37	10	50701217	50701217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERCC6	NM_000124	exon8	c.C1767A	p.F589L	.	.	109	5	150	0	.	1153
ERP29	10961	hgsc.bcm.edu	37	12	112451275	112451275	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERP29	NM_001034025	exon1	c.T6C	p.A2A	.	.	86	4	58	0	.	90
ERVFRD-1	405754	hgsc.bcm.edu	37	6	11104838	11104838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERVFRD-1	NM_207582	exon2	c.T706C	p.S236P	.	.	91	4	57	0	.	94
ESPL1	9700	bcgsc.ca	37	12	53670429	53670429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ESPL1	NM_012291	exon8	c.T1726C	p.W576R	.	.	26	4	36	0	.	228
ETFDH	2110	bcgsc.ca	37	4	159603429	159603429	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ETFDH	NM_004453	exon3	c.T258C	p.R86R	.	.	95	5	152	1	.	154
EVC2	132884	hgsc.bcm.edu	37	4	5624634	5624634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EVC2	NM_147127	exon14	c.A2131G	p.R711G	.	.	135	7	160	0	.	155
EXD1	161829	hgsc.bcm.edu	37	15	41482300	41482300	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXD1	NM_152596	exon9	c.A717G	p.R239R	.	.	90	4	98	0	.	91
EXOC3	11336	hgsc.bcm.edu	37	5	466898	466898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXOC3	NM_007277	exon13	c.A2123G	p.K708R	.	.	109	6	147	0	.	90
EXPH5	23086	hgsc.bcm.edu;bcgsc.ca	37	11	108398908	108398908	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon4	c.T447C	p.C149C	.	.	66	4	84	0	.	95
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108464205	108464205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon1	c.A59G	p.K20R	.	.	199	8	202	0	.	95
F5	2153	hgsc.bcm.edu	37	1	169510014	169510014	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	F5	NM_000130	exon13	c.C4314T	p.L1438L	.	.	215	9	161	0	.	157
FAF1	11124	hgsc.bcm.edu	37	1	50941209	50941209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAF1	NM_007051	exon18	c.T1796C	p.V599A	.	.	97	4	115	0	.	652
FAM131B	9715	hgsc.bcm.edu;bcgsc.ca	37	7	143054115	143054115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM131B	NM_001031690	exon7	c.A611G	p.D204G	.	.	74	4	74	0	.	90
FAM132A	388581	hgsc.bcm.edu	37	1	1178923	1178923	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM132A	NM_001014980	exon5	c.C541T	p.Q181X	.	.	43	4	38	0	.	68
FAM153C	653316	broad.mit.edu	37	5	177473944	177473944	+	RNA	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	1640	16	1462	2	.	.
FAM160A1	729830	hgsc.bcm.edu;bcgsc.ca	37	4	152571430	152571430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001109977	exon11	c.C2237T	p.P746L	.	.	79	4	87	0	.	.
FAM207A	85395	bcgsc.ca	37	21	46363666	46363666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_058190	exon2	c.A197G	p.K66R	.	.	65	4	107	0	.	.
FAM221A	340277	ucsc.edu;bcgsc.ca	37	7	23729036	23729036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_199136	exon3	c.G388A	p.A130T	.	.	38	4	50	0	.	.
FAM22F	54754	hgsc.bcm.edu	37	9	97080944	97080944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM22F	NM_017561	exon7	c.C2074G	p.P692A	.	.	312	2	390	0	.	68
FAM64A	54478	hgsc.bcm.edu	37	17	6352638	6352638	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM64A	NM_019013	exon4	c.T597C	p.S199S	.	.	85	4	134	0	.	90
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	34	8	37	0	.	.
FAM83F	113828	hgsc.bcm.edu	37	22	40415308	40415308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM83F	NM_138435	exon2	c.A626G	p.Q209R	.	.	116	5	114	0	.	153
FAM98B	283742	hgsc.bcm.edu	37	15	38776830	38776830	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM98B	NM_173611	exon8	c.T1272A	p.G424G	.	.	88	7	119	0	.	515
FASTKD2	22868	hgsc.bcm.edu	37	2	207652780	207652780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FASTKD2	NM_001136193	exon9	c.T1714C	p.S572P	.	.	66	4	95	0	.	118
FAT4	79633	hgsc.bcm.edu	37	4	126371393	126371393	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAT4	NM_024582	exon9	c.T9222C	p.T3074T	.	.	97	4	135	0	.	108
FBRSL1	57666	hgsc.bcm.edu	37	12	133102339	133102339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBRSL1	NM_001142641	exon3	c.A509G	p.K170R	.	.	80	4	58	0	.	70
FBXL7	23194	hgsc.bcm.edu	37	5	15936656	15936656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBXL7	NM_012304	exon4	c.G837A	p.M279I	.	.	63	4	62	0	.	228
FBXO10	26267	hgsc.bcm.edu	37	9	37525156	37525156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBXO10	NM_012166	exon6	c.T1720C	p.F574L	.	.	78	4	88	0	.	637
FBXW5	54461	hgsc.bcm.edu	37	9	139837940	139837940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBXW5	NM_018998	exon3	c.A212G	p.E71G	.	.	62	4	71	0	.	226
FCN3	8547	hgsc.bcm.edu	37	1	27697419	27697419	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FCN3	NM_003665	exon6	c.T438C	p.S146S	.	.	95	5	118	0	.	90
FES	2242	hgsc.bcm.edu	37	15	91434318	91434318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FES	NM_002005	exon11	c.A1427G	p.H476R	.	.	104	5	91	0	.	546
FGD4	121512	hgsc.bcm.edu	37	12	32735126	32735126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGD4	NM_139241	exon4	c.A325G	p.T109A	.	.	100	5	162	0	.	229
FGF10	2255	hgsc.bcm.edu	37	5	44388683	44388683	+	Silent	SNP	A	A	G	rs140279180	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGF10	NM_004465	exon1	c.T102C	p.P34P	.	.	141	6	128	0	A|1.000;C|0.000	522
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4553334	4553334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGF6	NM_020996	exon2	c.G415A	p.V139I	.	.	95	24	103	0	.	659
FGFR2	2263	bcgsc.ca	37	10	123274762	123274762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGFR2	NM_022970	exon9	c.T1159C	p.F387L	.	.	255	7	362	0	.	2607
FGFR4	2264	hgsc.bcm.edu	37	5	176520392	176520392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGFR4	NM_022963	exon8	c.T1117C	p.S373P	.	.	166	7	113	0	.	1460
FHAD1	114827	hgsc.bcm.edu	37	1	15616080	15616080	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FHAD1	NM_052929	exon4	c.C486T	p.S162S	.	.	79	4	64	0	.	69
FHDC1	85462	hgsc.bcm.edu;bcgsc.ca	37	4	153884235	153884235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FHDC1	NM_033393	exon7	c.A982G	p.T328A	.	.	68	4	93	0	.	136
FIBIN	387758	hgsc.bcm.edu	37	11	27016470	27016470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIBIN	NM_203371	exon1	c.T397C	p.S133P	.	.	51	5	43	0	.	68
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164467698	164467698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIGN	NM_018086	exon3	c.A644G	p.H215R	.	.	178	50	193	1	.	156
FIGN	55137	hgsc.bcm.edu	37	2	164467712	164467712	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIGN	NM_018086	exon3	c.T630C	p.H210H	.	.	167	7	198	0	.	156
FLOT1	10211	hgsc.bcm.edu	37	6	30709964	30709964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FLOT1	NM_005803	exon2	c.G3A	p.M1I	.	.	93	4	72	0	.	90
FLT1	2321	hgsc.bcm.edu	37	13	28913323	28913323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FLT1	NM_002019	exon17	c.C2470T	p.R824W	.	.	88	4	124	0	.	1406
FLT4	2324	broad.mit.edu	37	5	180038412	180038412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FLT4	NM_182925	exon27	c.T3605C	p.V1202A	.	.	215	8	163	1	.	1490
FMN1	342184	hgsc.bcm.edu	37	15	33359640	33359640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FMN1	NM_001103184	exon1	c.A446G	p.D149G	.	.	94	5	124	0	.	23
FN1	2335	ucsc.edu	37	2	216235053	216235053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FN1	NM_212482	exon41	c.A6817G	p.K2273E	.	.	173	3	202	0	.	584
FOXJ2	55810	hgsc.bcm.edu	37	12	8202064	8202064	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FOXJ2	NM_018416	exon9	c.T1434C	p.G478G	.	.	70	4	81	0	.	230
FOXN3	1112	hgsc.bcm.edu	37	14	89878687	89878687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FOXN3	NM_005197	exon2	c.T134C	p.L45P	.	.	83	4	92	0	.	229
FOXO4	4303	hgsc.bcm.edu	37	X	70320733	70320733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FOXO4	NM_005938	exon2	c.T653C	p.V218A	.	.	39	4	33	0	.	986
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRG1B	.	.	.	.	.	.	898	37	1084	18	.	22
FRMD1	79981	broad.mit.edu	37	6	168457860	168457860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRMD1	NM_024919	exon11	c.G1567T	p.A523S	.	.	68	11	86	1	.	91
FRMPD2	143162	hgsc.bcm.edu	37	10	49457197	49457197	+	Missense_Mutation	SNP	G	G	A	rs142764597	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRMPD2	NM_001018071	exon3	c.C176T	p.P59L	.	.	83	4	89	0	G|1.000;T|0.000	153
FRS2	10818	hgsc.bcm.edu;bcgsc.ca	37	12	69968235	69968235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRS2	NM_001042555	exon10	c.A1027G	p.R343G	.	.	64	4	89	0	.	658
FRY	10129	bcgsc.ca	37	13	32835797	32835797	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRY	NM_023037	exon52	c.T7461C	p.S2487S	.	.	100	6	121	1	.	142
FTSJ3	117246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61902423	61902423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FTSJ3	NM_017647	exon8	c.T696C	p.T232T	.	.	86	5	98	0	.	91
FUT11	170384	hgsc.bcm.edu	37	10	75532420	75532420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FUT11	NM_173540	exon1	c.G329A	p.R110Q	.	.	20	4	15	0	.	90
FYB	2533	bcgsc.ca	37	5	39127882	39127882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FYB	NM_001243093	exon11	c.A1898G	p.D633G	.	.	212	7	220	2	.	24
FYB	2533	hgsc.bcm.edu;bcgsc.ca	37	5	39130699	39130699	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FYB	NM_001243093	exon10	c.A1863G	p.G621G	.	.	73	5	72	0	.	24
GAB1	2549	bcgsc.ca	37	4	144336695	144336695	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GAB1	NM_207123	exon2	c.A138G	p.E46E	.	.	185	6	226	0	.	1146
GABPB2	126626	broad.mit.edu	37	1	151090724	151090724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABPB2	NM_144618	exon9	c.T1339C	p.S447P	.	.	983	13	813	0	.	90
GABRB3	2562	bcgsc.ca	37	15	27017915	27017915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRB3	NM_021912	exon2	c.A85G	p.N29D	.	.	38	4	48	1	.	518
GABRG1	2565	hgsc.bcm.edu;bcgsc.ca	37	4	46067446	46067446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRG1	NM_173536	exon4	c.C477T	p.H159H	.	.	77	4	117	0	.	92
GABRR1	2569	hgsc.bcm.edu	37	6	89890099	89890099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRR1	NM_002042	exon9	c.T1058C	p.V353A	.	.	74	4	122	0	.	91
GAD1	2571	bcgsc.ca	37	2	171686009	171686009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GAD1	NM_000817	exon4	c.T170C	p.L57P	.	.	80	4	84	1	.	91
GALNT6	11226	broad.mit.edu	37	12	51773531	51773531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GALNT6	NM_007210	exon3	c.G35T	p.R12L	.	.	19	7	28	0	.	92
GALNT9	50614	hgsc.bcm.edu	37	12	132688051	132688051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GALNT9	NM_001122636	exon7	c.C1262T	p.S421L	.	.	74	4	65	0	.	90
GALT	2592	hgsc.bcm.edu	37	9	34649497	34649497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GALT	NM_000155	exon10	c.T995C	p.V332A	.	.	92	4	117	0	.	90
GCNT2	2651	bcgsc.ca	37	6	10556694	10556694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GCNT2	NM_001491	exon1	c.T38C	p.V13A	.	.	153	5	152	0	.	92
GDI1	2664	bcgsc.ca	37	X	153668335	153668335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GDI1	NM_001493	exon5	c.T436C	p.F146L	.	.	156	5	165	1	.	90
GKAP1	80318	hgsc.bcm.edu	37	9	86395306	86395306	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GKAP1	NM_025211	exon7	c.A576T	p.K192N	.	.	243	16	280	0	.	90
GLG1	2734	hgsc.bcm.edu;bcgsc.ca	37	16	74528672	74528672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLG1	NM_001145667	exon6	c.T1036C	p.S346P	.	.	88	4	94	0	.	136
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816819	75816819	+	Missense_Mutation	SNP	G	G	C	rs77365041	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLIPR1L2	NM_152436	exon4	c.G720C	p.K240N	.	.	114	9	128	0	G|0.872;C|0.128	91
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816822	75816822	+	Silent	SNP	A	A	G	rs75261424		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLIPR1L2	NM_152436	exon4	c.A723G	p.K241K	.	.	113	7	124	0	.	91
GLT6D1	360203	hgsc.bcm.edu;bcgsc.ca	37	9	138516329	138516329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLT6D1	NM_182974	exon5	c.G445A	p.V149M	.	.	47	4	80	0	.	91
GMPS	8833	hgsc.bcm.edu;bcgsc.ca	37	3	155629067	155629067	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GMPS	NM_003875	exon7	c.A885G	p.K295K	.	.	89	4	117	0	.	229
GNAL	2774	hgsc.bcm.edu;bcgsc.ca	37	18	11862404	11862404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNAL	NM_182978	exon6	c.A733G	p.R245G	.	.	76	6	88	0	.	228
GNAT1	2779	hgsc.bcm.edu	37	3	50231568	50231568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNAT1	NM_144499	exon6	c.A622G	p.I208V	.	.	88	4	91	0	.	417
GNE	10020	hgsc.bcm.edu	37	9	36222836	36222836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNE	NM_001128227	exon9	c.C1664T	p.A555V	.	.	96	4	159	0	.	115
GPATCH4	54865	hgsc.bcm.edu	37	1	156565051	156565051	+	Missense_Mutation	SNP	G	G	C	rs75463812	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPATCH4	NM_015590	exon8	c.C1082G	p.T361S	.	.	692	27	543	0	C|1.000;|0.000	91
GPR111	222611	hgsc.bcm.edu	37	6	47649442	47649442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR111	NM_153839	exon7	c.A943G	p.K315E	.	.	98	4	78	0	.	91
GPR112	139378	hgsc.bcm.edu	37	X	135430116	135430116	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR112	NM_153834	exon6	c.T4251C	p.D1417D	.	.	86	4	106	0	.	183
GPR132	29933	hgsc.bcm.edu	37	14	105517339	105517339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR132	NM_013345	exon4	c.T1135C	p.S379P	.	.	99	5	124	0	.	92
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	131616271	131616271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR133	NM_198827	exon21	c.T2177C	p.V726A	.	.	167	7	140	0	.	191
GPR143	4935	hgsc.bcm.edu;bcgsc.ca	37	X	9711666	9711666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR143	NM_000273	exon6	c.A706G	p.R236G	.	.	70	4	67	0	.	131
GPR148	344561	hgsc.bcm.edu	37	2	131486858	131486858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR148	NM_207364	exon1	c.C134T	p.P45L	.	.	93	4	103	0	.	91
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91700443	91700443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR68	NM_001177676	exon2	c.G952A	p.E318K	.	.	23	6	18	0	.	91
GRB7	2886	hgsc.bcm.edu	37	17	37901211	37901211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GRB7	NM_001242442	exon9	c.T1054C	p.W352R	.	.	83	4	84	0	.	848
GREB1	9687	hgsc.bcm.edu	37	2	11772120	11772120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GREB1	NM_014668	exon27	c.A4697G	p.D1566G	.	.	146	6	187	0	.	91
GREB1L	80000	hgsc.bcm.edu	37	18	19095396	19095396	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001142966	exon29	c.A4920G	p.G1640G	.	.	66	4	79	0	.	.
GREB1L	80000	hgsc.bcm.edu	37	18	19100757	19100757	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001142966	exon32	c.G5581C	p.D1861H	.	.	196	12	225	0	.	.
GREB1L	80000	hgsc.bcm.edu	37	18	19100763	19100763	+	Missense_Mutation	SNP	A	A	C	rs201565664		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001142966	exon32	c.A5587C	p.K1863Q	.	.	174	12	198	0	.	.
GRIPAP1	56850	ucsc.edu;bcgsc.ca	37	X	48853705	48853705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GRIPAP1	NM_020137	exon5	c.A263G	p.D88G	.	.	33	4	35	0	.	227
GSR	2936	bcgsc.ca	37	8	30541627	30541627	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GSR	NM_000637	exon10	c.T1131C	p.C377C	.	.	102	6	273	1	.	94
GUCY1B3	2983	ucsc.edu;bcgsc.ca	37	4	156724822	156724822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_000857	exon11	c.A1460G	p.E487G	.	.	50	4	78	1	.	.
GUCY2F	2986	hgsc.bcm.edu	37	X	108628445	108628445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GUCY2F	NM_001522	exon16	c.A3023G	p.N1008S	.	.	99	4	97	0	.	540
H1FNT	341567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48723755	48723755	+	Silent	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	H1FNT	NM_181788	exon1	c.G681C	p.P227P	.	.	37	8	51	1	.	91
H2AFV	94239	hgsc.bcm.edu	37	7	44875219	44875219	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	H2AFV	NM_012412	exon4	c.A234G	p.K78K	.	.	81	5	132	0	.	90
HAMP	57817	hgsc.bcm.edu	37	19	35775715	35775715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HAMP	NM_021175	exon2	c.A114G	p.Q38Q	.	.	81	4	98	0	.	90
HAVCR1	26762	hgsc.bcm.edu	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	.	.	440	38	419	0	.	92
HDAC1	3065	hgsc.bcm.edu;bcgsc.ca	37	1	32797350	32797350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HDAC1	NM_004964	exon11	c.G1162A	p.A388T	.	.	70	4	87	0	.	659
HECTD3	79654	hgsc.bcm.edu	37	1	45469234	45469234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HECTD3	NM_024602	exon21	c.A2516G	p.E839G	.	.	109	5	146	0	.	658
HECW1	23072	bcgsc.ca	37	7	43519300	43519300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HECW1	NM_015052	exon17	c.A3191G	p.H1064R	.	.	129	5	132	0	.	669
HEG1	57493	hgsc.bcm.edu	37	3	124724182	124724182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEG1	NM_020733	exon9	c.A3224G	p.K1075R	.	.	58	4	88	0	.	70
HEG1	57493	hgsc.bcm.edu	37	3	124732410	124732410	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEG1	NM_020733	exon6	c.T2013C	p.S671S	.	.	75	25	76	0	.	70
HELQ	113510	bcgsc.ca	37	4	84350751	84350751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HELQ	NM_133636	exon12	c.A2444G	p.D815G	.	.	238	7	341	0	.	155
HEPHL1	341208	hgsc.bcm.edu	37	11	93844145	93844145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEPHL1	NM_001098672	exon18	c.A3122G	p.H1041R	.	.	125	5	134	0	.	71
HEPHL1	341208	hgsc.bcm.edu	37	11	93845031	93845031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEPHL1	NM_001098672	exon20	c.T3451C	p.S1151P	.	.	94	4	138	0	.	71
HERC2	8924	hgsc.bcm.edu;bcgsc.ca	37	15	28493786	28493786	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HERC2	NM_004667	exon21	c.T3147C	p.A1049A	.	.	82	4	125	0	.	234
HERC2	8924	ucsc.edu	37	15	28422147	28422147	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HERC2	NM_004667	exon61	c.G9381A	p.E3127E	.	.	44	4	89	0	.	234
HINFP	25988	hgsc.bcm.edu	37	11	119004976	119004976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HINFP	NM_015517	exon11	c.A1322G	p.E441G	.	.	90	4	118	0	.	320
HIP1	3092	hgsc.bcm.edu	37	7	75184733	75184733	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIP1	NM_005338	exon19	c.C1950T	p.C650C	.	.	100	4	146	0	.	1085
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26156943	26156943	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A325T	p.K109X	.	.	141	52	119	0	.	154
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26156946	26156946	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A328T	p.K110X	.	.	146	55	110	0	.	154
HK3	3101	hgsc.bcm.edu	37	5	176314004	176314004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HK3	NM_002115	exon13	c.A1856G	p.Q619R	.	.	72	4	52	0	.	294
HLCS	3141	hgsc.bcm.edu	37	21	38309237	38309237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HLCS	NM_000411	exon5	c.T508C	p.S170P	.	.	95	4	157	0	.	157
HMGCS2	3158	hgsc.bcm.edu	37	1	120295968	120295968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HMGCS2	NM_005518	exon7	c.T1229C	p.F410S	.	.	97	4	144	0	.	92
HMGXB4	10042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35661108	35661108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HMGXB4	NM_001003681	exon5	c.A727G	p.S243G	.	.	132	16	142	0	.	272
HNRNPM	4670	hgsc.bcm.edu	37	19	8550522	8550522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HNRNPM	NM_005968	exon14	c.A1210G	p.M404V	.	.	74	4	62	0	.	68
HOXC6	3223	bcgsc.ca	37	12	54422481	54422481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HOXC6	NM_004503	exon1	c.A176G	p.E59G	.	.	76	8	118	2	.	93
HOXC8	3224	ucsc.edu;bcgsc.ca	37	12	54403261	54403261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HOXC8	NM_022658	exon1	c.T193C	p.S65P	.	.	48	4	66	4	.	91
HPS6	79803	hgsc.bcm.edu;bcgsc.ca	37	10	103827332	103827332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HPS6	NM_024747	exon1	c.C2101T	p.P701S	.	.	56	4	55	0	.	90
HR	55806	hgsc.bcm.edu	37	8	21984816	21984816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HR	NM_018411	exon3	c.A1139G	p.K380R	.	.	75	4	156	0	.	154
HSP90AA1	3320	hgsc.bcm.edu	37	14	102551269	102551269	+	Missense_Mutation	SNP	C	C	T	rs3208444		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HSP90AA1	NM_001017963	exon6	c.G1096A	p.E366K	.	.	186	11	246	0	.	949
HSP90AA1	3320	hgsc.bcm.edu	37	14	102551278	102551278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HSP90AA1	NM_001017963	exon6	c.A1087G	p.K363E	.	.	177	25	225	0	.	949
HSPG2	3339	hgsc.bcm.edu	37	1	22181466	22181466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HSPG2	NM_005529	exon48	c.A6008G	p.E2003G	.	.	139	6	161	0	.	141
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231973880	231973880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HTR2B	NM_000867	exon4	c.C797T	p.T266I	.	.	147	57	248	0	.	90
HTT	3064	hgsc.bcm.edu	37	4	3227454	3227454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HTT	NM_002111	exon57	c.G7832T	p.S2611I	.	.	123	5	136	0	.	281
HUWE1	10075	bcgsc.ca	37	X	53592061	53592061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HUWE1	NM_031407	exon50	c.T6847C	p.S2283P	.	.	137	5	197	3	.	280
HYPK	25764	hgsc.bcm.edu	37	15	44093963	44093963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_016400	exon4	c.A349G	p.M117V	.	.	97	4	81	0	.	.
IFIT1	3434	bcgsc.ca	37	10	91162491	91162491	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT1	NM_001548	exon2	c.A459G	p.G153G	.	.	132	5	196	1	.	90
IFIT1B	439996	hgsc.bcm.edu;bcgsc.ca	37	10	91144106	91144106	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT1B	NM_001010987	exon2	c.C1036T	p.L346L	.	.	61	4	60	0	.	90
IFIT2	3433	hgsc.bcm.edu	37	10	91066406	91066406	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT2	NM_001547	exon2	c.A693G	p.E231E	.	.	72	4	92	0	.	92
IFNA2	3440	bcgsc.ca	37	9	21384797	21384797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFNA2	NM_000605	exon1	c.A532G	p.T178A	.	.	241	6	384	0	.	153
IGF2R	3482	hgsc.bcm.edu	37	6	160469467	160469467	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IGF2R	NM_000876	exon18	c.A2406G	p.E802E	.	.	62	4	124	0	.	118
IKBKAP	8518	hgsc.bcm.edu	37	9	111656321	111656321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IKBKAP	NM_003640	exon26	c.T2762C	p.L921P	.	.	69	4	118	0	.	318
IL11RA	3590	hgsc.bcm.edu	37	9	34656848	34656848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL11RA	NM_001142784	exon4	c.T274C	p.Y92H	.	.	75	4	131	0	.	227
IL1RAP	3556	hgsc.bcm.edu	37	3	190366343	190366343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL1RAP	NM_001167929	exon11	c.T1562C	p.L521P	.	.	81	4	140	0	.	91
IL22RA1	58985	hgsc.bcm.edu	37	1	24460747	24460747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL22RA1	NM_021258	exon4	c.A485G	p.D162G	.	.	85	4	147	0	.	91
IL22RA1	58985	hgsc.bcm.edu	37	1	24463631	24463631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL22RA1	NM_021258	exon3	c.T345C	p.S115S	.	.	49	4	61	0	.	91
IL2RB	3560	bcgsc.ca	37	22	37538553	37538553	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL2RB	NM_000878	exon5	c.204-1G>T	.	.	.	75	4	117	0	.	90
IMPDH1	3614	bcgsc.ca	37	7	128038530	128038530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IMPDH1	NM_000883	exon10	c.C1012T	p.R338C	.	.	84	4	116	0	.	230
ING4	51147	hgsc.bcm.edu	37	12	6761445	6761445	+	Missense_Mutation	SNP	T	T	C	rs201257362		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ING4	NM_001127582	exon6	c.A640G	p.N214D	.	.	81	4	127	0	T|0.999;C|0.000	515
INSR	3643	hgsc.bcm.edu	37	19	7267868	7267868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INSR	NM_000208	exon2	c.T140C	p.L47S	.	.	68	4	69	0	.	1381
INTS2	57508	bcgsc.ca	37	17	60002420	60002420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INTS2	NM_020748	exon3	c.T358C	p.S120P	.	.	131	5	160	0	.	206
INTS2	57508	hgsc.bcm.edu	37	17	59981858	59981858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INTS2	NM_020748	exon9	c.T1294C	p.S432P	.	.	94	4	129	0	.	206
INTS5	80789	hgsc.bcm.edu	37	11	62416122	62416122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INTS5	NM_030628	exon2	c.T1430C	p.L477P	.	.	69	4	66	0	.	92
IPCEF1	26034	hgsc.bcm.edu;bcgsc.ca	37	6	154480993	154480993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IPCEF1	NM_001130699	exon13	c.T1287C	p.P429P	.	.	57	5	79	0	.	90
IQCB1	9657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	121527778	121527778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IQCB1	NM_001023570	exon6	c.G472T	p.E158X	.	.	271	103	240	0	.	90
IQCD	115811	hgsc.bcm.edu	37	12	113633675	113633675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IQCD	NM_138451	exon3	c.A749G	p.D250G	.	.	81	4	98	0	.	91
IRF2	3660	hgsc.bcm.edu	37	4	185340657	185340657	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IRF2	NM_002199	exon3	c.T153C	p.D51D	.	.	74	4	96	0	.	91
IST1	9798	bcgsc.ca	37	16	71956403	71956403	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001270976	exon8	c.A618G	p.T206T	.	.	142	5	233	0	.	.
ITGA11	22801	hgsc.bcm.edu	37	15	68599732	68599732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITGA11	NM_001004439	exon28	c.A3335G	p.Q1112R	.	.	86	6	88	0	.	538
ITGAX	3687	hgsc.bcm.edu	37	16	31384577	31384577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITGAX	NM_000887	exon20	c.T2374C	p.S792P	.	.	99	4	128	0	.	229
ITGB3BP	23421	hgsc.bcm.edu	37	1	63975830	63975830	+	Missense_Mutation	SNP	T	T	C	rs6588047		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITGB3BP	NM_001206739	exon2	c.A28G	p.R10G	.	.	6	6	0	0	T|0.038;C|0.962	90
ITGB6	3694	bcgsc.ca	37	2	160994026	160994026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITGB6	NM_000888	exon10	c.T1579C	p.S527P	.	.	62	4	84	0	.	227
ITIH6	347365	hgsc.bcm.edu	37	X	54786268	54786268	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_198510	exon7	c.A996G	p.K332K	.	.	93	4	119	0	.	.
ITPA	3704	ucsc.edu	37	20	3204047	3204047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITPA	NM_033453	exon8	c.T524C	p.V175A	.	.	46	4	57	1	.	91
ITSN1	6453	bcgsc.ca	37	21	35229047	35229047	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITSN1	NM_003024	exon30	c.A3669G	p.S1223S	.	.	159	6	196	0	.	94
ITSN1	6453	hgsc.bcm.edu	37	21	35094909	35094910	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITSN1	NM_001001132	exon4	c.138_139insT	p.N46fs	.	.	293	113	362	0	.	94
JAK1	3716	hgsc.bcm.edu	37	1	65335078	65335078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK1	NM_002227	exon6	c.A563G	p.E188G	.	.	87	4	149	0	.	3900
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65307245	65307245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK1	NM_002227	exon18	c.C2443T	p.P815S	.	.	148	45	177	0	.	3900
JAK3	3718	bcgsc.ca	37	19	17955195	17955195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK3	NM_000215	exon2	c.T32C	p.I11T	.	.	78	5	79	1	.	2418
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62739084	62739084	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KANK4	NM_181712	exon3	c.G1692T	p.V564V	.	.	151	22	251	0	.	74
KAT6A	7994	hgsc.bcm.edu	37	8	41794799	41794799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001099412	exon17	c.A3327T	p.E1109D	.	.	65	4	171	0	.	.
KAT6A	7994	hgsc.bcm.edu;bcgsc.ca	37	8	41791422	41791422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001099412	exon18	c.A4316G	p.H1439R	.	.	61	5	109	0	.	.
KAT6B	23522	hgsc.bcm.edu	37	10	76788662	76788662	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_012330	exon18	c.A4080G	p.E1360E	.	.	43	5	65	0	.	.
KCNB2	9312	broad.mit.edu;bcgsc.ca	37	8	73480279	73480279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNB2	NM_004770	exon2	c.C310T	p.R104W	.	.	302	21	178	1	.	158
KCNK4	50801	hgsc.bcm.edu	37	11	64060629	64060629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNK4	NM_033310	exon2	c.C139A	p.L47M	.	.	68	4	74	0	.	90
KCNMA1	3778	bcgsc.ca	37	10	78846254	78846254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNMA1	NM_002247	exon11	c.A1432G	p.R478G	.	.	151	5	184	0	.	93
KCNN2	3781	bcgsc.ca	37	5	113740187	113740187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNN2	NM_021614	exon3	c.A635G	p.E212G	.	.	135	5	130	0	.	92
KCNN3	3782	bcgsc.ca	37	1	154842330	154842330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNN3	NM_001204087	exon1	c.A111G	p.Q37Q	.	.	56	5	51	1	.	91
KDM2A	22992	hgsc.bcm.edu	37	11	67020287	67020287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM2A	NM_012308	exon18	c.T2891C	p.I964T	.	.	73	3	86	0	.	661
KDM3A	55818	hgsc.bcm.edu	37	2	86705806	86705806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM3A	NM_001146688	exon15	c.A2264G	p.N755S	.	.	87	4	132	0	.	291
KDM4B	23030	hgsc.bcm.edu	37	19	5041177	5041177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM4B	NM_015015	exon5	c.A347G	p.D116G	.	.	92	4	126	0	.	226
KDM5C	8242	hgsc.bcm.edu	37	X	53223019	53223019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM5C	NM_004187	exon24	c.G4053A	p.L1351L	.	.	79	4	93	0	.	1272
KIAA0319L	79932	hgsc.bcm.edu;bcgsc.ca	37	1	35972224	35972224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0319L	NM_024874	exon3	c.G655A	p.G219S	.	.	123	5	184	0	.	92
KIAA0391	9692	hgsc.bcm.edu;bcgsc.ca	37	14	35596745	35596745	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0391	NM_014672	exon4	c.T1095C	p.Y365Y	.	.	92	4	110	0	.	226
KIAA0947	23379	hgsc.bcm.edu	37	5	5461628	5461628	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0947	NM_015325	exon13	c.A2181G	p.K727K	.	.	102	5	116	0	.	48
KIAA0947	23379	hgsc.bcm.edu	37	5	5461675	5461675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0947	NM_015325	exon13	c.T2228C	p.F743S	.	.	81	4	99	0	.	48
KIAA1109	84162	hgsc.bcm.edu	37	4	123210267	123210267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1109	NM_015312	exon52	c.C9308T	p.T3103I	.	.	113	5	165	0	.	80
KIAA1210	57481	hgsc.bcm.edu	37	X	118284386	118284386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1210	NM_020721	exon1	c.A157G	p.T53A	.	.	87	5	88	0	.	67
KIAA1244	57221	hgsc.bcm.edu	37	6	138629880	138629880	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1244	NM_020340	exon24	c.A3978G	p.K1326K	.	.	89	4	163	0	.	228
KIAA1324	57535	hgsc.bcm.edu	37	1	109716107	109716107	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1324	NM_020775	exon6	c.T708C	p.N236N	.	.	91	4	107	0	.	157
KIAA1377	57562	broad.mit.edu	37	11	101857693	101857693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1377	NM_020802	exon9	c.A3165C	p.Q1055H	.	.	182	5	201	0	.	136
KIAA1731	85459	hgsc.bcm.edu	37	11	93432054	93432054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1731	NM_033395	exon15	c.A3976G	p.S1326G	.	.	100	4	148	0	.	22
KIAA1755	85449	hgsc.bcm.edu	37	20	36851965	36851965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1755	NM_001029864	exon9	c.A2243G	p.K748R	.	.	82	4	94	0	.	95
KIF11	3832	bcgsc.ca	37	10	94396976	94396976	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF11	NM_004523	exon15	c.A1911G	p.E637E	.	.	102	4	144	0	.	227
KIF18B	146909	hgsc.bcm.edu	37	17	43010044	43010044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	KIF18B,NS,carcinoma,-1	KIF18B	NM_001264573	exon9	c.A1235G	p.E412G	.	.	73	3	74	0	.	70
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901222	51901222	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF2B	NM_032559	exon1	c.C828T	p.N276N	.	.	112	36	102	0	.	98
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154394167	154394167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF4B	NM_001099293	exon1	c.A748C	p.T250P	.	.	269	19	227	0	.	1
KIF6	221458	bcgsc.ca	37	6	39607387	39607387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF6	NM_145027	exon4	c.A398G	p.K133R	.	.	184	6	150	0	.	713
KLF11	8462	hgsc.bcm.edu	37	2	10188645	10188645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLF11	NM_003597	exon3	c.A1181G	p.Y394C	.	.	78	4	81	0	.	228
KLHDC7A	127707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	18809370	18809370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHDC7A	NM_152375	exon1	c.G1895A	p.R632H	.	.	26	13	47	0	.	93
KLHL13	90293	hgsc.bcm.edu	37	X	117079481	117079481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHL13	NM_001168299	exon3	c.G165A	p.M55I	.	.	97	4	126	0	.	556
KLHL4	56062	bcgsc.ca	37	X	86773097	86773097	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHL4	NM_019117	exon1	c.T201C	p.S67S	.	.	119	5	132	2	.	133
KLRF1	51348	hgsc.bcm.edu	37	12	9994450	9994450	+	Missense_Mutation	SNP	G	G	A	rs111928232		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLRF1	NM_016523	exon4	c.G377A	p.C126Y	.	.	221	13	230	0	G|0.500;A|0.500	135
KPNA3	3839	hgsc.bcm.edu;bcgsc.ca	37	13	50285129	50285129	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KPNA3	NM_002267	exon11	c.A801G	p.S267S	.	.	68	4	100	0	.	226
KRT19	3880	hgsc.bcm.edu	37	17	39680207	39680207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRT19	NM_002276	exon6	c.T991C	p.F331L	.	.	121	5	96	0	.	90
KRT84	3890	hgsc.bcm.edu	37	12	52779324	52779324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRT84	NM_033045	exon1	c.A46G	p.N16D	.	.	61	4	83	0	.	91
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31692292	31692292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRTAP26-1	NM_203405	exon1	c.A62C	p.H21P	.	.	109	16	136	0	.	69
KRTAP27-1	643812	hgsc.bcm.edu	37	21	31709981	31709981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRTAP27-1	NM_001077711	exon1	c.T6C	p.P2P	.	.	132	7	214	0	.	24
KXD1	79036	ucsc.edu	37	19	18679431	18679431	+	Missense_Mutation	SNP	C	C	T	rs200331878		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001171948	exon6	c.C521T	p.T174M	.	.	19	3	20	0	C|0.999;T|0.001	.
KYNU	8942	bcgsc.ca	37	2	143713842	143713842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KYNU	NM_001199241	exon7	c.A506G	p.H169R	.	.	162	5	210	0	.	92
L3HYPDH	112849	ucsc.edu	37	14	59950690	59950690	+	Silent	SNP	A	A	C	rs2296842	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_144581	exon1	c.T345G	p.A115A	.	.	17	6	13	0	A|0.785;C|0.215	.
LAMA4	3910	hgsc.bcm.edu	37	6	112435867	112435867	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMA4	NM_001105206	exon37	c.A5205G	p.T1735T	.	.	99	4	167	0	.	140
LAMB2	3913	hgsc.bcm.edu	37	3	49162306	49162306	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMB2	NM_002292	exon21	c.A2937G	p.P979P	.	.	43	4	54	0	.	93
LAMB3	3914	hgsc.bcm.edu	37	1	209788716	209788716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMB3	NM_000228	exon23	c.T3419C	p.I1140T	.	.	98	4	75	0	.	156
LAMB3	3914	hgsc.bcm.edu	37	1	209799289	209799289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMB3	NM_000228	exon14	c.C1680T	p.T560T	.	.	77	4	30	0	.	156
LAMP1	3916	hgsc.bcm.edu;bcgsc.ca	37	13	113973926	113973926	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMP1	NM_005561	exon5	c.C705T	p.S235S	.	.	35	4	43	0	.	514
LCE4A	199834	hgsc.bcm.edu	37	1	152681696	152681696	+	Missense_Mutation	SNP	G	G	T	rs79268808		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LCE4A	NM_178356	exon1	c.G145T	p.G49C	.	.	326	26	232	0	.	90
LCN8	138307	hgsc.bcm.edu;bcgsc.ca	37	9	139651509	139651509	+	Missense_Mutation	SNP	C	C	T	rs140571672		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LCN8	NM_178469	exon2	c.G136A	p.V46M	.	.	76	4	90	0	C|1.000;T|0.000	91
LEPRE1	64175	hgsc.bcm.edu;bcgsc.ca	37	1	43224582	43224582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LEPRE1	NM_001146289	exon4	c.A881G	p.K294R	.	.	70	4	102	0	.	94
LGI2	55203	broad.mit.edu	37	4	25005757	25005757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LGI2	NM_018176	exon8	c.A954G	p.I318M	.	.	197	5	222	1	.	90
LMTK3	114783	hgsc.bcm.edu	37	19	49001397	49001397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LMTK3	NM_001080434	exon12	c.G3016A	p.G1006R	.	.	122	5	160	0	.	1357
LOC285696	0	bcgsc.ca	37	5	17202561	17202561	+	RNA	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	21	3	36	0	.	.
LOC96610	0	bcgsc.ca	37	22	22658372	22658372	+	RNA	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	65	4	75	0	.	.
LONP2	83752	bcgsc.ca	37	16	48303957	48303957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LONP2	NM_031490	exon7	c.T1013C	p.L338P	.	.	101	4	116	0	.	90
LPCAT1	79888	hgsc.bcm.edu	37	5	1463792	1463792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPCAT1	NM_024830	exon14	c.A1579G	p.K527E	.	.	90	4	115	0	.	92
LPCAT2	54947	ucsc.edu;bcgsc.ca	37	16	55563789	55563789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPCAT2	NM_017839	exon4	c.A572G	p.D191G	.	.	64	6	69	0	.	90
LPO	4025	hgsc.bcm.edu	37	17	56345321	56345321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPO	NM_006151	exon13	c.T2105C	p.L702P	.	.	77	4	105	0	.	91
LRIT1	26103	hgsc.bcm.edu	37	10	86001096	86001096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRIT1	NM_015613	exon1	c.A100G	p.M34V	.	.	84	4	89	0	.	90
LRP1B	53353	hgsc.bcm.edu	37	2	141707824	141707824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRP1B	NM_018557	exon20	c.A3116G	p.Q1039R	.	.	124	5	133	0	.	311
LRP5	4041	bcgsc.ca	37	11	68204430	68204430	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRP5	NM_002335	exon19	c.C4074T	p.F1358F	.	.	67	5	87	0	.	661
LRP6	4040	hgsc.bcm.edu	37	12	12279675	12279675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRP6	NM_002336	exon20	c.T4262C	p.V1421A	.	.	106	5	132	0	.	661
LRRC16B	90668	hgsc.bcm.edu;bcgsc.ca	37	14	24533482	24533482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC16B	NM_138360	exon32	c.A3007G	p.N1003D	.	.	56	4	51	0	.	139
LRRC24	441381	hgsc.bcm.edu;broad.mit.edu	37	8	145748134	145748134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC24	NM_001024678	exon5	c.G1267A	p.A423T	.	.	34	7	16	0	.	90
LRRC2	79442	hgsc.bcm.edu	37	3	46569020	46569020	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC2	NM_024512	exon7	c.T825C	p.L275L	.	.	100	4	99	0	.	91
LRRC29	26231	hgsc.bcm.edu	37	16	67241508	67241508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC29	NM_001004055	exon6	c.A672G	p.X224W	.	.	53	4	61	0	.	226
LRRC3B	116135	hgsc.bcm.edu	37	3	26751506	26751506	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC3B	NM_052953	exon2	c.T343C	p.L115L	.	.	81	4	76	0	.	94
LRRC3B	116135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	26751740	26751740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC3B	NM_052953	exon2	c.G577T	p.D193Y	.	.	146	10	197	0	.	94
LRRC56	115399	hgsc.bcm.edu	37	11	552650	552650	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC56	NM_198075	exon13	c.A1263G	p.Q421Q	.	.	124	5	116	0	.	91
LRRC8A	56262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131670854	131670855	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC8A	NM_001127244	exon3	c.1411_1412del	p.471_471del	.	.	40	11	68	0	.	90
LRRIQ4	344657	bcgsc.ca	37	3	169540223	169540223	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001080460	exon1	c.C514T	p.L172L	.	.	104	6	132	1	.	.
LTN1	26046	bcgsc.ca	37	21	30325540	30325540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LTN1	NM_015565	exon17	c.A3376G	p.R1126G	.	.	145	5	194	0	.	530
LYPD1	116372	bcgsc.ca	37	2	133403836	133403836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LYPD1	NM_144586	exon3	c.T208C	p.S70P	.	.	105	5	117	1	.	90
MACROD2	140733	hgsc.bcm.edu;bcgsc.ca	37	20	15967784	15967784	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MACROD2	NM_080676	exon15	c.A1134G	p.E378E	.	.	78	4	91	0	.	22
MAGI1	9223	hgsc.bcm.edu	37	3	65342529	65342529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAGI1	NM_001033057	exon23	c.A3913G	p.R1305G	.	.	161	11	146	0	.	661
MAK	4117	broad.mit.edu;bcgsc.ca	37	6	10802123	10802123	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAK	NM_005906	exon9	c.831+2T>C	.	.	.	223	7	215	0	.	335
MAN2A1	4124	hgsc.bcm.edu	37	5	109190938	109190938	+	Missense_Mutation	SNP	C	C	T	rs200723635		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAN2A1	NM_002372	exon20	c.C3074T	p.S1025F	.	.	185	15	174	0	.	92
MAP2	4133	hgsc.bcm.edu	37	2	210558428	210558428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAP2	NM_002374	exon7	c.A1534G	p.M512V	.	.	76	4	107	0	.	591
MAP3K5	4217	hgsc.bcm.edu	37	6	136935339	136935339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAP3K5	NM_005923	exon16	c.G2236T	p.E746X	.	.	87	4	113	0	.	982
MAPK8IP1	9479	bcgsc.ca	37	11	45926542	45926542	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAPK8IP1	NM_005456	exon10	c.T1914C	p.F638F	.	.	131	5	153	0	.	973
MARCH8	220972	bcgsc.ca	37	10	45953740	45953740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MARCH8	NM_001002266	exon7	c.T823C	p.S275P	.	.	159	6	179	0	.	68
MAT1A	4143	hgsc.bcm.edu;bcgsc.ca	37	10	82049166	82049166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAT1A	NM_000429	exon1	c.T14C	p.V5A	.	.	85	6	179	0	.	90
MBOAT4	619373	hgsc.bcm.edu	37	8	29989847	29989847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MBOAT4	NM_001100916	exon3	c.A920G	p.N307S	.	.	100	4	263	0	.	68
MC5R	4161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13826628	13826628	+	Silent	SNP	C	C	T	rs142287236	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MC5R	NM_005913	exon1	c.C864T	p.S288S	.	.	311	41	360	1	C|1.000;T|0.000	526
MED12L	116931	bcgsc.ca	37	3	151102932	151102932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED12L	NM_053002	exon34	c.A4936G	p.T1646A	.	.	291	7	272	1	.	576
MED17	9440	hgsc.bcm.edu;bcgsc.ca	37	11	93528080	93528080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED17	NM_004268	exon6	c.C866T	p.P289L	.	.	84	4	99	0	.	187
MED21	9412	hgsc.bcm.edu;bcgsc.ca	37	12	27181241	27181241	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED21	NM_004264	exon4	c.A282G	p.E94E	.	.	75	4	90	0	.	227
MED24	9862	bcgsc.ca	37	17	38182514	38182514	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED24	NM_014815	exon19	c.A1880C	p.H627P	.	.	67	40	66	11	.	187
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38179530	38179530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED24	NM_014815	exon20	c.C2104T	p.P702S	.	.	94	20	128	0	.	187
MEGF8	1954	hgsc.bcm.edu;bcgsc.ca	37	19	42874933	42874933	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEGF8	NM_001271938	exon40	c.A7086G	p.K2362K	.	.	80	4	66	0	.	23
MEN1	4221	hgsc.bcm.edu	37	11	64577196	64577196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEN1	NM_130800	exon2	c.T386C	p.L129P	.	.	118	8	105	0	.	3017
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29790544	29790544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEP1B	NM_005925	exon10	c.C1000A	p.P334T	.	.	58	25	82	0	.	92
MEPE	56955	hgsc.bcm.edu	37	4	88766433	88766433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEPE	NM_020203	exon4	c.A413G	p.D138G	.	.	86	4	182	0	.	93
METTL21D	79609	hgsc.bcm.edu	37	14	50583176	50583176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	METTL21D	NM_024558	exon1	c.A95G	p.Q32R	.	.	84	4	98	0	.	90
MIB1	57534	bcgsc.ca	37	18	19345906	19345906	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MIB1	NM_020774	exon2	c.401+2T>C	.	.	.	72	4	100	1	.	526
MICU1	10367	hgsc.bcm.edu	37	10	74267928	74267928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001195518	exon6	c.A637G	p.T213A	.	.	97	4	100	0	.	.
MID2	11043	bcgsc.ca	37	X	107147257	107147257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MID2	NM_012216	exon4	c.A886G	p.R296G	.	.	150	5	171	0	.	227
MKS1	54903	hgsc.bcm.edu;bcgsc.ca	37	17	56290446	56290446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MKS1	NM_017777	exon8	c.A755G	p.E252G	.	.	53	4	74	0	.	91
MLL3	58508	bcgsc.ca	37	7	151873844	151873844	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLL3	NM_170606	exon38	c.T8694C	p.T2898T	.	.	221	9	221	1	.	1398
MLL4	8085	hgsc.bcm.edu	37	19	36221615	36221615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLL4	NM_014727	exon26	c.C5284A	p.R1762S	.	.	58	4	83	0	.	697
MLL4	8085	hgsc.bcm.edu	37	19	36223465	36223465	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLL4	NM_014727	exon28	c.A6015G	p.E2005E	.	.	77	7	91	0	.	697
MLLT10	8028	bcgsc.ca	37	10	22019929	22019929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLLT10	NM_004641	exon18	c.A2212G	p.R738G	.	.	168	6	192	1	.	658
MLLT10	8028	hgsc.bcm.edu	37	10	22030912	22030912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLLT10	NM_001195626	exon22	c.A3207G	p.X1069W	.	.	104	6	166	0	.	658
MMP14	4323	bcgsc.ca	37	14	23311820	23311820	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MMP14	NM_004995	exon4	c.T582C	p.G194G	.	.	64	4	75	1	.	226
MMP14	4323	hgsc.bcm.edu;broad.mit.edu	37	14	23310816	23310816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MMP14	NM_004995	exon2	c.A225G	p.Q75Q	.	.	44	4	48	0	.	226
MON2	23041	hgsc.bcm.edu;bcgsc.ca	37	12	62887709	62887709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MON2	NM_015026	exon3	c.A190G	p.S64G	.	.	86	4	142	0	.	514
MORC4	79710	bcgsc.ca	37	X	106185432	106185432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MORC4	NM_001085354	exon16	c.A2396G	p.E799G	.	.	135	5	166	1	.	131
MPDZ	8777	hgsc.bcm.edu	37	9	13188853	13188853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MPDZ	NM_003829	exon17	c.A2294G	p.E765G	.	.	97	4	141	0	.	231
MROH2B	133558	bcgsc.ca	37	5	40999805	40999805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_173489	exon40	c.T4559C	p.I1520T	.	.	206	6	301	1	.	.
MROH7	374977	hgsc.bcm.edu	37	1	55139780	55139780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001039464	exon10	c.T1892C	p.L631P	.	.	147	6	172	0	.	.
MRVI1	10335	bcgsc.ca	37	11	10622539	10622539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MRVI1	NM_130385	exon15	c.A1943G	p.E648G	.	.	221	6	275	0	.	25
MS4A14	84689	hgsc.bcm.edu	37	11	60165354	60165354	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MS4A14	NM_001261828	exon2	c.T168A	p.I56I	.	.	361	16	411	0	.	90
MS4A6A	64231	hgsc.bcm.edu	37	11	59947428	59947428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MS4A6A	NM_001247999	exon4	c.T242C	p.I81T	.	.	145	6	153	0	.	90
MTFR2	113115	hgsc.bcm.edu;bcgsc.ca	37	6	136564084	136564084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_138419	exon4	c.T196C	p.S66P	.	.	56	4	71	0	.	.
MTMR1	8776	hgsc.bcm.edu	37	X	149905886	149905886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MTMR1	NM_003828	exon11	c.A1415G	p.K472R	.	.	88	4	103	0	.	131
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56586080	56586080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MTMR4	NM_004687	exon6	c.T416C	p.L139P	.	.	86	26	118	0	.	91
MUC6	4588	hgsc.bcm.edu	37	11	1025876	1025876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MUC6	NM_005961	exon22	c.A2728G	p.I910V	.	.	81	4	113	0	.	23
MVD	4597	hgsc.bcm.edu	37	16	88721665	88721665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MVD	NM_002461	exon7	c.T839C	p.I280T	.	.	119	5	98	0	.	90
MYO15A	51168	hgsc.bcm.edu	37	17	18063265	18063265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO15A	NM_016239	exon55	c.A9320G	p.E3107G	.	.	66	4	96	0	.	97
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27414105	27414105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO18A	NM_078471	exon38	c.A5561T	p.K1854M	.	.	144	52	174	0	.	22
MYO1H	283446	hgsc.bcm.edu	37	12	109853345	109853345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001101421	exon14	c.G1469A	p.G490D	.	.	80	4	71	0	.	.
MYO5B	4645	bcgsc.ca	37	18	47511097	47511097	+	Missense_Mutation	SNP	T	T	C	rs182144565		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO5B	NM_001080467	exon8	c.A937G	p.T313A	.	.	142	5	163	1	T|0.999;C|0.000	72
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72119321	72119321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO9A	NM_006901	exon42	c.G7247A	p.R2416Q	.	.	59	7	59	0	.	93
N4BP2L2	10443	bcgsc.ca	37	13	33111038	33111038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	N4BP2L2	NM_014887	exon2	c.T127C	p.F43L	.	.	295	7	381	0	.	68
N4BP2L2	10443	hgsc.bcm.edu	37	13	33012840	33012840	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	N4BP2L2	NM_033111	exon8	c.T2184C	p.L728L	.	.	111	5	96	0	.	68
NAB1	4664	bcgsc.ca	37	2	191524646	191524646	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NAB1	NM_005966	exon4	c.A744G	p.E248E	.	.	285	8	334	0	.	226
NALCN	259232	hgsc.bcm.edu;bcgsc.ca	37	13	102047689	102047689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NALCN	NM_052867	exon3	c.G136T	p.A46S	.	.	64	4	89	0	.	167
NBEA	26960	hgsc.bcm.edu	37	13	36229065	36229065	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NBEA	NM_015678	exon53	c.T8046C	p.C2682C	.	.	92	4	127	0	.	144
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47043918	47043918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NBEAL2	NM_015175	exon32	c.A5209T	p.M1737L	.	.	91	26	92	0	.	69
NCAPG2	54892	bcgsc.ca	37	7	158457282	158457282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NCAPG2	NM_017760	exon14	c.A1640G	p.N547S	.	.	77	4	137	1	.	272
NCL	4691	hgsc.bcm.edu	37	2	232325390	232325390	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NCL	NM_005381	exon4	c.G801A	p.E267E	.	.	211	17	319	0	.	230
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3745	3745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	ENST00000361390	exon1	c.G439A	p.A147T	.	.	244	15	179	0	.	.
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11484	11484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	ENST00000361381	exon1	c.G725A	p.G242D	.	.	243	13	217	1	.	.
ND5	0	bcgsc.ca	37	MT	13476	13476	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	ENST00000361567	exon1	c.A1140G	p.L380L	.	.	282	268	232	6	.	.
NFASC	23114	hgsc.bcm.edu	37	1	204937944	204937944	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFASC	NM_015090	exon10	c.A870G	p.A290A	.	.	100	4	87	0	.	139
NFATC3	4775	hgsc.bcm.edu;bcgsc.ca	37	16	68208375	68208375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFATC3	NM_173163	exon6	c.T1873C	p.F625L	.	.	74	4	104	0	.	92
NFE2L1	4779	hgsc.bcm.edu	37	17	46136184	46136184	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFE2L1	NM_003204	exon6	c.T1500C	p.S500S	.	.	87	4	71	0	.	91
NFE2L1	4779	hgsc.bcm.edu;bcgsc.ca	37	17	46128683	46128683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFE2L1	NM_003204	exon2	c.A203G	p.H68R	.	.	81	4	99	0	.	91
NFKB2	4791	hgsc.bcm.edu	37	10	104160556	104160556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFKB2	NM_002502	exon17	c.G1943A	p.G648E	.	.	100	4	115	0	.	522
NFRKB	4798	hgsc.bcm.edu;bcgsc.ca	37	11	129752348	129752348	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFRKB	NM_006165	exon8	c.A1155G	p.E385E	.	.	120	6	96	0	.	93
NIP7	51388	hgsc.bcm.edu;bcgsc.ca	37	16	69375544	69375544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NIP7	NM_016101	exon5	c.A532G	p.T178A	.	.	84	5	137	0	.	153
NLRC5	84166	hgsc.bcm.edu;bcgsc.ca	37	16	57067552	57067552	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRC5	NM_032206	exon11	c.A2514G	p.K838K	.	.	70	4	67	0	.	159
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56565030	56565030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRP5	NM_153447	exon13	c.C3155T	p.A1052V	.	.	151	21	131	1	.	162
NLRP6	171389	bcgsc.ca	37	11	281614	281614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRP6	NM_138329	exon4	c.A1880G	p.E627G	.	.	137	5	170	0	.	583
NOP14-AS1	317648	ucsc.edu	37	4	2940397	2940397	+	RNA	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	15	1	24	0	.	.
NOS1AP	9722	hgsc.bcm.edu	37	1	162335312	162335312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NOS1AP	NM_014697	exon9	c.T1058C	p.V353A	.	.	85	4	68	0	.	228
NOX3	50508	hgsc.bcm.edu	37	6	155750089	155750089	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NOX3	NM_015718	exon9	c.A984G	p.P328P	.	.	79	4	114	0	.	91
NOXRED1	122945	bcgsc.ca	37	14	77873108	77873108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001113475	exon4	c.A641G	p.D214G	.	.	136	6	180	0	.	.
NPEPPS	9520	hgsc.bcm.edu	37	17	45679095	45679095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NPEPPS	NM_006310	exon15	c.A1722G	p.K574K	.	.	118	5	147	0	.	90
NPHS2	7827	bcgsc.ca	37	1	179528847	179528847	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NPHS2	NM_014625	exon4	c.T501C	p.L167L	.	.	217	7	155	0	.	90
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	.	.	72	12	78	0	G|0.903;A|0.097	186
NRP1	8829	hgsc.bcm.edu	37	10	33552610	33552610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NRP1	NM_001024629	exon4	c.T622C	p.Y208H	.	.	84	4	89	0	.	525
NRXN1	9378	hgsc.bcm.edu;bcgsc.ca	37	2	51254792	51254792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NRXN1	NM_004801	exon2	c.A620G	p.E207G	.	.	114	5	119	0	.	92
NTRK3	4916	hgsc.bcm.edu	37	15	88423565	88423565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NTRK3	NM_001012338	exon19	c.G2270A	p.G757E	.	.	131	6	167	0	.	3538
NUCB2	4925	hgsc.bcm.edu	37	11	17352477	17352477	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUCB2	NM_005013	exon13	c.T1202A	p.L401X	.	.	304	2	300	0	.	90
NUDC	10726	hgsc.bcm.edu;bcgsc.ca	37	1	27269479	27269479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDC	NM_006600	exon6	c.C664A	p.L222I	.	.	72	4	110	0	.	91
NUDCD1	84955	bcgsc.ca	37	8	110305733	110305733	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDCD1	NM_032869	exon4	c.T480C	p.L160L	.	.	153	5	77	0	.	227
NUDT1	4521	hgsc.bcm.edu	37	7	2284331	2284331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDT1	NM_198949	exon3	c.A191G	p.E64G	.	.	67	4	65	0	.	90
NUP155	9631	bcgsc.ca	37	5	37305274	37305274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUP155	NM_153485	exon26	c.A2942G	p.E981G	.	.	287	8	325	0	.	205
NXF1	10482	bcgsc.ca	37	11	62570968	62570968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NXF1	NM_006362	exon3	c.A292G	p.R98G	.	.	131	5	140	0	.	228
NXF3	56000	hgsc.bcm.edu	37	X	102339711	102339711	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NXF3	NM_022052	exon2	c.T129C	p.S43S	.	.	113	5	130	0	.	205
NXPH4	11247	hgsc.bcm.edu	37	12	57619481	57619481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NXPH4	NM_007224	exon2	c.A878G	p.K293R	.	.	53	5	52	0	.	68
OAF	220323	hgsc.bcm.edu	37	11	120096467	120096467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OAF	NM_178507	exon2	c.A329G	p.E110G	.	.	70	4	62	0	.	68
OAS1	4938	hgsc.bcm.edu	37	12	113357213	113357213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OAS1	NM_016816	exon6	c.A1058G	p.D353G	.	.	85	4	78	0	.	70
OASL	8638	bcgsc.ca	37	12	121458502	121458502	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OASL	NM_003733	exon6	c.T1407C	p.L469L	.	.	131	5	163	0	.	69
OCEL1	79629	hgsc.bcm.edu	37	19	17339715	17339715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OCEL1	NM_024578	exon6	c.A776G	p.E259G	.	.	19	4	22	0	.	68
ODF2	4957	hgsc.bcm.edu;bcgsc.ca	37	9	131231625	131231625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ODF2	NM_153435	exon5	c.A605G	p.K202R	.	.	63	4	89	0	.	69
OPRD1	4985	hgsc.bcm.edu	37	1	29185650	29185650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OPRD1	NM_000911	exon2	c.A412G	p.T138A	.	.	89	4	115	0	.	69
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62729930	62729930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OPRL1	NM_000913	exon4	c.C891T	p.A297A	.	.	96	38	104	0	.	69
OR14A16	284532	hgsc.bcm.edu	37	1	247978543	247978543	+	Silent	SNP	G	G	T	rs200138400		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR14A16	NM_001001966	exon1	c.C489A	p.S163S	.	.	109	6	83	0	.	46
OR1E2	8388	hgsc.bcm.edu	37	17	3336727	3336727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR1E2	NM_003554	exon1	c.T409C	p.F137L	.	.	116	6	260	0	.	131
OR2W5	441932	broad.mit.edu;bcgsc.ca	37	1	247654704	247654704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR2W5	NM_001004698	exon1	c.T275A	p.I92N	.	.	158	13	117	1	.	115
OR4B1	119765	hgsc.bcm.edu;bcgsc.ca	37	11	48239231	48239231	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR4B1	NM_001005470	exon1	c.A870G	p.A290A	.	.	74	4	61	0	.	72
OR4K14	122740	hgsc.bcm.edu	37	14	20482991	20482991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR4K14	NM_001004712	exon1	c.A362G	p.Y121C	.	.	86	4	124	0	.	115
OR51B4	79339	hgsc.bcm.edu;bcgsc.ca	37	11	5322255	5322255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR51B4	NM_033179	exon1	c.A922G	p.S308G	.	.	72	4	84	0	.	70
OR5B21	219968	hgsc.bcm.edu	37	11	58275280	58275280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR5B21	NM_001005218	exon1	c.T299C	p.F100S	.	.	94	4	123	0	.	71
OR5M1	390168	hgsc.bcm.edu	37	11	56380553	56380553	+	Silent	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR5M1	NM_001004740	exon1	c.C426G	p.V142V	.	.	168	9	199	0	.	94
OR6S1	341799	hgsc.bcm.edu	37	14	21109228	21109228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR6S1	NM_001001968	exon1	c.T623C	p.L208P	.	.	46	4	67	0	.	70
OR8B4	283162	hgsc.bcm.edu	37	11	124294157	124294157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR8B4	NM_001005196	exon1	c.T611A	p.V204E	.	.	112	6	126	0	.	69
OR9A4	130075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141619595	141619595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR9A4	NM_001001656	exon1	c.G920T	p.R307L	.	.	61	24	69	0	.	91
P2RY2	5029	hgsc.bcm.edu	37	11	72945625	72945625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	P2RY2	NM_176071	exon3	c.T421C	p.S141P	.	.	74	4	41	0	.	503
PADI2	11240	hgsc.bcm.edu	37	1	17402249	17402249	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	PADI2,NS,NS,-2	PADI2	NM_007365	exon12	c.G1380A	p.V460V	.	.	101	5	132	0	.	208
PAF1	54623	hgsc.bcm.edu	37	19	39880716	39880716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PAF1	NM_019088	exon3	c.C163A	p.Q55K	.	.	79	4	90	0	.	69
PAFAH1B2	5049	hgsc.bcm.edu	37	11	117031926	117031926	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PAFAH1B2	NM_001184747	exon4	c.A237G	p.R79R	.	.	107	5	116	0	.	204
PARP11	57097	hgsc.bcm.edu	37	12	3931065	3931065	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PARP11	NM_020367	exon6	c.C522T	p.N174N	.	.	90	4	119	0	.	523
PAX2	5076	bcgsc.ca	37	10	102541121	102541121	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PAX2	NM_003987	exon5	c.A615G	p.E205E	.	.	96	5	114	1	.	90
PC	5091	hgsc.bcm.edu	37	11	66636393	66636393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PC	NM_000920	exon9	c.A946G	p.R316G	.	.	148	7	181	0	.	228
PCDH11X	27328	broad.mit.edu	37	X	91131984	91131984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDH11X	NM_001168363	exon2	c.T745C	p.F249L	.	.	275	8	358	0	.	193
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140250200	140250200	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHA11	NM_018902	exon1	c.G1512A	p.S504S	.	.	142	11	114	0	.	67
PCDHA3	56145	hgsc.bcm.edu	37	5	140180864	140180864	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHA3	NM_031497	exon1	c.A82C	p.S28R	.	.	95	4	83	0	.	98
PCDHB3	56132	hgsc.bcm.edu	37	5	140480645	140480645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHB3	NM_018937	exon1	c.A412G	p.M138V	.	.	87	4	65	0	.	92
PCM1	5108	hgsc.bcm.edu	37	8	17830021	17830021	+	Silent	SNP	A	A	G	rs138011703		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCM1	NM_006197	exon23	c.A3768G	p.E1256E	.	.	95	4	190	0	A|0.999;G|0.000	742
PCNT	5116	hgsc.bcm.edu	37	21	47786943	47786943	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCNT	NM_006031	exon15	c.A3054G	p.K1018K	.	.	77	4	94	0	.	141
PCP2	126006	hgsc.bcm.edu	37	19	7696666	7696666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCP2	NM_174895	exon4	c.T320C	p.L107P	.	.	99	7	78	0	.	90
PDE11A	50940	bcgsc.ca	37	2	178565895	178565895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDE11A	NM_016953	exon14	c.T2198C	p.L733S	.	.	160	5	172	0	.	93
PDE11A	50940	hgsc.bcm.edu	37	2	178494173	178494173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDE11A	NM_016953	exon20	c.C2764T	p.P922S	.	.	254	3	268	0	.	93
PDE9A	5152	hgsc.bcm.edu	37	21	44174131	44174131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDE9A	NM_002606	exon10	c.T767C	p.L256P	.	.	51	3	49	0	.	92
PDIA6	10130	hgsc.bcm.edu	37	2	10925108	10925108	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDIA6	NM_005742	exon12	c.T1206C	p.A402A	.	.	79	4	88	0	.	90
PDK3	5165	hgsc.bcm.edu	37	X	24521601	24521601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDK3	NM_005391	exon4	c.T478C	p.S160P	.	.	98	4	115	0	.	377
PES1	23481	hgsc.bcm.edu;bcgsc.ca	37	22	30975865	30975865	+	Silent	SNP	G	G	T	rs140808409	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PES1	NM_014303	exon12	c.C1227A	p.P409P	.	.	81	6	79	0	G|0.980;A|0.020	90
PEX5L	51555	broad.mit.edu	37	3	179597869	179597869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PEX5L	NM_016559	exon5	c.T353C	p.V118A	.	.	828	8	1123	2	.	156
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	42933450	42933450	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PEX6	NM_000287	exon13	c.C2440T	p.R814X	.	.	184	17	148	0	.	91
PGBD4	161779	hgsc.bcm.edu	37	15	34395101	34395101	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PGBD4	NM_152595	exon1	c.A369G	p.E123E	.	.	78	4	118	0	.	90
PGS1	9489	bcgsc.ca	37	17	76395498	76395498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PGS1	NM_024419	exon5	c.T581C	p.L194P	.	.	66	5	71	0	.	90
PHF17	79960	hgsc.bcm.edu	37	4	129782996	129782996	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHF17	NM_199320	exon9	c.A1119G	p.K373K	.	.	92	4	167	0	.	90
PHF7	51533	bcgsc.ca	37	3	52455025	52455025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHF7	NM_016483	exon7	c.A520G	p.N174D	.	.	123	5	191	0	.	153
PHF8	23133	hgsc.bcm.edu	37	X	54011486	54011486	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHF8	NM_001184896	exon18	c.T2412C	p.S804S	.	.	46	4	52	0	.	133
PHIP	55023	bcgsc.ca	37	6	79735816	79735816	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHIP	NM_017934	exon8	c.A666G	p.R222R	.	.	157	5	254	1	.	579
PHLPP1	23239	hgsc.bcm.edu;bcgsc.ca	37	18	60642674	60642674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_194449	exon16	c.T3800C	p.L1267P	.	.	141	6	145	0	.	.
PHYHD1	254295	hgsc.bcm.edu	37	9	131689459	131689459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHYHD1	NM_001100877	exon2	c.A176G	p.E59G	.	.	70	4	102	0	.	90
PIBF1	10464	hgsc.bcm.edu	37	13	73401963	73401963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PIBF1	NM_006346	exon8	c.T1008C	p.H336H	.	.	50	4	73	0	.	136
PIPOX	51268	hgsc.bcm.edu	37	17	27371932	27371932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PIPOX	NM_016518	exon2	c.A170G	p.K57R	.	.	114	5	147	0	.	90
PIR	8544	hgsc.bcm.edu	37	X	15477841	15477841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PIR	NM_001018109	exon4	c.G212A	p.G71D	.	.	84	4	112	0	.	131
PITPNM3	83394	hgsc.bcm.edu	37	17	6367544	6367544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PITPNM3	NM_031220	exon16	c.T2102C	p.V701A	.	.	63	4	100	0	.	228
PITPNM3	83394	hgsc.bcm.edu	37	17	6386875	6386875	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PITPNM3	NM_031220	exon6	c.T549C	p.C183C	.	.	83	4	200	0	.	228
PKD1	5310	hgsc.bcm.edu;bcgsc.ca	37	16	2147400	2147400	+	Missense_Mutation	SNP	G	G	A	rs144593342	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD1	NM_001009944	exon33	c.C10325T	p.A3442V	.	.	18	4	31	0	G|0.998;A|0.002	91
PKD1L1	168507	bcgsc.ca	37	7	47944183	47944183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD1L1	NM_138295	exon12	c.A1723G	p.M575V	.	.	56	4	96	0	.	145
PKD2L2	27039	hgsc.bcm.edu;bcgsc.ca	37	5	137271514	137271514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD2L2	NM_014386	exon13	c.A1700G	p.K567R	.	.	92	4	71	0	.	90
PKHD1	5314	bcgsc.ca	37	6	51613209	51613209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKHD1	NM_170724	exon58	c.A9205G	p.T3069A	.	.	143	6	117	1	.	603
PKNOX1	5316	hgsc.bcm.edu;bcgsc.ca	37	21	44430256	44430256	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKNOX1	NM_004571	exon4	c.A273G	p.V91V	.	.	53	4	66	0	.	153
PLA2G2F	64600	broad.mit.edu	37	1	20474766	20474766	+	Nonsense_Mutation	SNP	C	C	T	rs202032125		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLA2G2F	NM_022819	exon5	c.C508T	p.R170X	.	.	156	8	240	1	C|1.000;T|0.000	91
PLA2G7	7941	bcgsc.ca	37	6	46677087	46677087	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLA2G7	NM_005084	exon9	c.T846C	p.T282T	.	.	193	6	154	0	.	90
PLEKHA5	54477	hgsc.bcm.edu	37	12	19410367	19410367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHA5	NM_001143821	exon6	c.A433G	p.T145A	.	.	79	4	84	0	.	227
PLEKHA5	54477	hgsc.bcm.edu	37	12	19499936	19499936	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHA5	NM_001256470	exon24	c.A2718G	p.E906E	.	.	78	4	128	0	.	227
PLEKHM1	9842	hgsc.bcm.edu	37	17	43516846	43516846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHM1	NM_014798	exon11	c.T3056C	p.V1019A	.	.	101	5	145	0	.	90
PLEKHN1	84069	hgsc.bcm.edu	37	1	909218	909218	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHN1	NM_032129	exon14	c.C1440T	p.L480L	.	.	72	4	89	0	.	227
PLXNA4	91584	bcgsc.ca	37	7	132169662	132169662	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLXNA4	NM_181775	exon5	c.T1482C	p.L494L	.	.	95	6	171	1	.	91
PNPLA2	57104	hgsc.bcm.edu	37	11	821745	821745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PNPLA2	NM_020376	exon3	c.T305C	p.L102P	.	.	99	4	102	0	.	90
POLE	5426	hgsc.bcm.edu	37	12	133218836	133218836	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	POLE	NM_006231	exon38	c.T5100C	p.D1700D	.	.	99	4	114	0	.	233
POLR3B	55703	hgsc.bcm.edu	37	12	106824062	106824062	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	POLR3B	NM_018082	exon14	c.T1275C	p.S425S	.	.	92	4	76	0	.	91
POMT2	29954	hgsc.bcm.edu	37	14	77765880	77765880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	POMT2	NM_013382	exon7	c.G841A	p.A281T	.	.	124	5	95	0	.	91
PPIH	10465	hgsc.bcm.edu	37	1	43133074	43133074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPIH	NM_006347	exon9	c.A518G	p.Q173R	.	.	82	4	86	0	.	90
PPL	5493	hgsc.bcm.edu	37	16	4942072	4942072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPL	NM_002705	exon15	c.A1793G	p.E598G	.	.	88	4	105	0	.	95
PPP2R2A	5520	hgsc.bcm.edu;bcgsc.ca	37	8	26227714	26227714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP2R2A	NM_001177591	exon10	c.A1159G	p.I387V	.	.	108	5	200	0	.	659
PPP4R1	9989	hgsc.bcm.edu	37	18	9593834	9593834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP4R1	NM_001042388	exon4	c.A227G	p.E76G	.	.	91	4	89	0	.	227
PPP4R4	57718	broad.mit.edu	37	14	94718121	94718121	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP4R4	NM_058237	exon16	c.C1753T	p.R585X	.	.	452	6	438	2	.	94
PPWD1	23398	hgsc.bcm.edu;bcgsc.ca	37	5	64868003	64868003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPWD1	NM_015342	exon5	c.T859C	p.C287R	.	.	75	4	84	0	.	91
PRF1	5551	hgsc.bcm.edu	37	10	72357981	72357981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRF1	NM_001083116	exon3	c.A1496G	p.Q499R	.	.	88	4	103	0	.	578
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	.	.	156	11	145	0	.	90
PRKCSH	5589	hgsc.bcm.edu	37	19	11560105	11560105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRKCSH	NM_002743	exon17	c.A1465G	p.T489A	.	.	89	5	72	0	.	90
PROM2	150696	hgsc.bcm.edu	37	2	95940507	95940507	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PROM2	NM_001165977	exon1	c.A174G	p.G58G	.	.	78	4	99	0	.	91
PRPF40B	25766	hgsc.bcm.edu	37	12	50036726	50036726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRPF40B	NM_001031698	exon22	c.A2132G	p.H711R	.	.	120	5	138	0	.	95
PRPF8	10594	ucsc.edu;bcgsc.ca	37	17	1564444	1564444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRPF8	NM_006445	exon28	c.A4351G	p.N1451D	.	.	46	4	71	0	.	525
PRR14L	253143	hgsc.bcm.edu	37	22	32109192	32109192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRR14L	NM_173566	exon4	c.A4633G	p.R1545G	.	.	85	4	92	0	.	91
PRRC2A	7916	hgsc.bcm.edu	37	6	31599743	31599743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRRC2A	NM_004638	exon16	c.C3293T	p.P1098L	.	.	74	4	50	0	.	156
PRRC2C	23215	bcgsc.ca	37	1	171492615	171492615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_015172	exon9	c.A1003G	p.S335G	.	.	147	5	114	2	.	.
PRSS3	5646	hgsc.bcm.edu	37	9	33796693	33796693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRSS3	NM_007343	exon2	c.G264T	p.E88D	.	.	276	10	408	0	.	90
PRUNE2	158471	hgsc.bcm.edu	37	9	79461504	79461504	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRUNE2	NM_015225	exon4	c.T435C	p.S145S	.	.	80	4	114	0	.	157
PTAR1	375743	hgsc.bcm.edu	37	9	72356709	72356709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTAR1	NM_001099666	exon3	c.A322G	p.R108G	.	.	99	4	133	0	.	69
PTCHD2	57540	hgsc.bcm.edu	37	1	11574569	11574569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTCHD2	NM_020780	exon4	c.T1439C	p.L480P	.	.	84	4	131	0	.	209
PTGES	9536	hgsc.bcm.edu	37	9	132502117	132502117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTGES	NM_004878	exon3	c.A232G	p.T78A	.	.	90	4	118	0	.	226
PTPN12	5782	bcgsc.ca	37	7	77240127	77240127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPN12	NM_002835	exon10	c.A808G	p.R270G	.	.	110	4	179	0	.	228
PTPN23	25930	hgsc.bcm.edu	37	3	47454662	47454662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPN23	NM_015466	exon25	c.T4898C	p.L1633P	.	.	87	4	94	0	.	227
PTPRB	5787	hgsc.bcm.edu;bcgsc.ca	37	12	70989899	70989899	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRB	NM_001109754	exon5	c.A1188G	p.K396K	.	.	98	5	149	0	.	226
PTPRH	5794	hgsc.bcm.edu	37	19	55697237	55697237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRH	NM_002842	exon17	c.T2894C	p.L965P	.	.	88	5	100	0	.	138
PTPRO	5800	hgsc.bcm.edu	37	12	15704607	15704607	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRO	NM_030667	exon15	c.2558+2T>C	.	.	.	84	4	128	0	.	271
PTPRZ1	5803	hgsc.bcm.edu	37	7	121652375	121652375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRZ1	NM_002851	exon12	c.T3275C	p.I1092T	.	.	92	4	139	0	.	699
PXDN	7837	hgsc.bcm.edu;bcgsc.ca	37	2	1664712	1664712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PXDN	NM_012293	exon14	c.A1778G	p.E593G	.	.	75	4	78	0	.	166
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9318676	9318676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PZP	NM_002864	exon18	c.A2230G	p.T744A	.	.	89	5	135	0	.	157
QRSL1	55278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107113765	107113765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	QRSL1	NM_018292	exon11	c.A1475G	p.K492R	.	.	112	12	197	1	.	90
QSER1	79832	hgsc.bcm.edu	37	11	32955843	32955843	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	QSER1	NM_001076786	exon4	c.T2652C	p.G884G	.	.	112	5	189	0	.	95
R3HCC1L	27291	hgsc.bcm.edu	37	10	100003864	100003864	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001256619	exon11	c.A2328G	p.E776E	.	.	87	4	112	0	.	.
RAB34	83871	hgsc.bcm.edu	37	17	27042082	27042082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RAB34	NM_001142625	exon9	c.A746G	p.K249R	.	.	70	4	86	0	.	227
RAD51B	5890	bcgsc.ca	37	14	68878185	68878185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RAD51B	NM_133509	exon9	c.T898C	p.W300R	.	.	136	5	163	0	.	660
RAI1	10743	bcgsc.ca	37	17	17696920	17696920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RAI1	NM_030665	exon3	c.T658C	p.S220P	.	.	101	6	207	2	.	91
RAP1GAP2	23108	bcgsc.ca	37	17	2883623	2883623	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RAP1GAP2	NM_015085	exon9	c.A639G	p.G213G	.	.	97	8	167	6	.	1
RASAL3	64926	hgsc.bcm.edu	37	19	15565287	15565287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_022904	exon13	c.T2045C	p.V682A	.	.	128	6	130	0	.	.
RASAL3	64926	hgsc.bcm.edu;bcgsc.ca	37	19	15569377	15569377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_022904	exon7	c.T752C	p.L251P	.	.	95	6	113	0	.	.
RASGRF2	5924	hgsc.bcm.edu	37	5	80511700	80511700	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RASGRF2	NM_006909	exon24	c.A3360G	p.K1120K	.	.	86	4	105	0	.	725
RASSF6	166824	hgsc.bcm.edu	37	4	74459214	74459214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RASSF6	NM_201431	exon4	c.T337C	p.S113P	.	.	149	6	191	0	.	319
RBKS	64080	hgsc.bcm.edu	37	2	28004570	28004570	+	Missense_Mutation	SNP	G	G	T	rs200310841	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RBKS	NM_022128	exon8	c.C881A	p.S294Y	.	.	83	4	146	0	.	92
RC3H2	54542	hgsc.bcm.edu	37	9	125642094	125642094	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RC3H2	NM_018835	exon8	c.A1152G	p.V384V	.	.	68	5	78	0	.	523
RDH16	8608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57351246	57351246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RDH16	NM_003708	exon1	c.A1G	p.M1V	.	.	79	9	113	0	.	90
RDH5	5959	bcgsc.ca	37	12	56117706	56117706	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RDH5	NM_001199771	exon4	c.C606T	p.I202I	.	.	48	4	51	0	.	91
RECQL4	9401	hgsc.bcm.edu	37	8	145737638	145737638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RECQL4	NM_004260	exon19	c.A3125G	p.D1042G	.	.	115	6	57	0	.	1083
RFT1	91869	hgsc.bcm.edu	37	3	53126534	53126534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RFT1	NM_052859	exon12	c.T1309C	p.F437L	.	.	83	4	78	0	.	91
RFTN2	130132	hgsc.bcm.edu	37	2	198480674	198480674	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RFTN2	NM_144629	exon7	c.T1080C	p.P360P	.	.	98	4	108	0	.	90
RGAG1	57529	bcgsc.ca	37	X	109697462	109697462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RGAG1	NM_020769	exon3	c.A3617G	p.E1206G	.	.	103	4	130	0	.	132
RGAG4	340526	hgsc.bcm.edu	37	X	71349868	71349868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RGAG4	NM_001024455	exon1	c.A1523G	p.N508S	.	.	122	5	140	0	.	132
RGMA	56963	hgsc.bcm.edu	37	15	93595304	93595304	+	Silent	SNP	C	C	T	rs150533497		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RGMA	NM_001166283	exon3	c.G588A	p.P196P	.	.	95	4	88	0	C|0.999;T|0.001	90
RHBDL2	54933	hgsc.bcm.edu	37	1	39381373	39381373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RHBDL2	NM_017821	exon3	c.T256C	p.F86L	.	.	84	5	134	0	.	90
RIF1	55183	hgsc.bcm.edu	37	2	152316610	152316610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIF1	NM_018151	exon26	c.G3052A	p.E1018K	.	.	277	17	287	0	.	300
RILPL1	353116	bcgsc.ca	37	12	123968808	123968808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_178314	exon6	c.A986G	p.E329G	.	.	205	6	222	1	.	.
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	72678720	72678720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIMS1	NM_014989	exon2	c.T199C	p.C67R	.	.	102	10	96	0	.	144
RIOK1	83732	hgsc.bcm.edu	37	6	7393524	7393524	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIOK1	NM_031480	exon2	c.A264G	p.G88G	.	.	141	8	133	0	.	336
RNF148	378925	hgsc.bcm.edu	37	7	122342235	122342235	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RNF148	NM_198085	exon1	c.C570T	p.Y190Y	.	.	84	4	97	0	.	204
RNF152	220441	hgsc.bcm.edu	37	18	59483299	59483299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RNF152	NM_173557	exon2	c.T398C	p.V133A	.	.	68	4	107	0	.	226
RNF40	9810	hgsc.bcm.edu	37	16	30783507	30783507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RNF40	NM_014771	exon19	c.A2825G	p.Y942C	.	.	88	4	101	0	.	226
RNR2	6053	broad.mit.edu	37	MT	2988	2988	+	RNA	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	257	99	189	0	.	.
ROBO4	54538	hgsc.bcm.edu	37	11	124764172	124764172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ROBO4	NM_019055	exon8	c.T1243C	p.S415P	.	.	109	5	132	0	.	92
RPAP1	26015	hgsc.bcm.edu	37	15	41819624	41819624	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPAP1	NM_015540	exon12	c.C1608A	p.I536I	.	.	96	4	117	0	.	153
RPL11	6135	hgsc.bcm.edu;broad.mit.edu	37	1	24022368	24022368	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL11	NM_000975	exon5	c.A477G	p.K159K	.	.	74	4	119	0	.	226
RPL27A	6157	hgsc.bcm.edu	37	11	8704765	8704765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL27A	NM_000990	exon2	c.A20G	p.K7R	.	.	78	4	101	0	.	90
RPL4	6124	broad.mit.edu	37	15	66795737	66795737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL4	NM_000968	exon2	c.G134A	p.R45H	.	.	183	6	247	0	.	90
RPS13	6207	bcgsc.ca	37	11	17099257	17099257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS13	.	.	.	.	.	.	89	8	109	0	.	90
RPS24	6229	hgsc.bcm.edu	37	10	79795311	79795311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS24	NM_001142282	exon3	c.A112G	p.T38A	.	.	70	4	71	0	.	91
RPS6KA5	9252	hgsc.bcm.edu	37	14	91369167	91369167	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS6KA5	NM_182398	exon9	c.T1104C	p.S368S	.	.	125	5	168	0	.	979
RPS6KC1	26750	hgsc.bcm.edu	37	1	213415488	213415488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS6KC1	NM_012424	exon11	c.A2669G	p.D890G	.	.	124	5	132	0	.	417
RPSA	3921	hgsc.bcm.edu	37	3	39453157	39453157	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPSA	NM_001012321	exon4	c.T516C	p.G172G	.	.	83	4	112	0	.	278
RQCD1	9125	hgsc.bcm.edu;bcgsc.ca	37	2	219447748	219447748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RQCD1	NM_001271634	exon3	c.T259C	p.S87P	.	.	95	4	130	0	.	92
RSBN1	54665	hgsc.bcm.edu	37	1	114309729	114309729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RSBN1	NM_018364	exon6	c.G1927A	p.V643I	.	.	90	4	137	0	.	91
S1PR3	1903	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	91617111	91617111	+	Silent	SNP	C	C	T	rs138808274		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	S1PR3	NM_005226	exon2	c.C996T	p.L332L	.	.	27	8	40	1	C|1.000;T|0.000	949
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23906630	23906630	+	Silent	SNP	A	A	G	rs148605896	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.T11385C	p.A3795A	.	.	110	5	120	0	A|0.999;C|0.001	298
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23911630	23911630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.G6385A	p.G2129R	.	.	94	4	131	0	.	298
SAFB	6294	hgsc.bcm.edu;bcgsc.ca	37	19	5654111	5654111	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SAFB	NM_002967	exon12	c.A1566G	p.K522K	.	.	66	4	91	0	.	228
SCGB1A1	7356	hgsc.bcm.edu;bcgsc.ca	37	11	62189867	62189867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCGB1A1	NM_003357	exon2	c.T230C	p.I77T	.	.	71	4	97	0	.	90
SCMH1	22955	hgsc.bcm.edu	37	1	41579042	41579042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCMH1	NM_001172219	exon8	c.T658C	p.Y220H	.	.	54	4	88	0	.	90
SCNN1A	6337	bcgsc.ca	37	12	6483546	6483546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCNN1A	NM_001159576	exon1	c.T581C	p.L194P	.	.	52	4	104	0	.	90
SDK1	221935	bcgsc.ca	37	7	3681639	3681639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SDK1	NM_152744	exon4	c.A615G	p.G205G	.	.	136	5	182	0	.	138
SEMA5A	9037	hgsc.bcm.edu;bcgsc.ca	37	5	9122917	9122917	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEMA5A	NM_003966	exon14	c.T1632C	p.G544G	.	.	135	6	158	0	.	91
SEPSECS	51091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25156728	25156728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPSECS	NM_016955	exon5	c.T593C	p.L198P	.	.	101	11	109	0	.	90
SEPT2	4735	hgsc.bcm.edu;bcgsc.ca	37	2	242287583	242287583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPT2	NM_001008491	exon12	c.A961G	p.I321V	.	.	100	4	160	0	.	68
SERPINA11	256394	hgsc.bcm.edu	37	14	94914957	94914957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERPINA11	NM_001080451	exon2	c.C155T	p.P52L	.	.	92	4	96	0	.	204
SERPING1	710	hgsc.bcm.edu;bcgsc.ca	37	11	57374013	57374013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERPING1	NM_001032295	exon5	c.A1022G	p.K341R	.	.	65	4	82	0	.	650
SERTAD2	9792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	64863856	64863856	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERTAD2	NM_014755	exon2	c.C150T	p.N50N	.	.	220	21	237	0	.	90
SETX	23064	bcgsc.ca	37	9	135201963	135201963	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SETX	NM_015046	exon10	c.T5022C	p.V1674V	.	.	145	5	212	0	.	93
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26771552	26771552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEZ6L	NM_021115	exon15	c.G2839T	p.A947S	.	.	64	26	114	0	.	95
SF3B2	10992	bcgsc.ca	37	11	65827417	65827417	+	Silent	SNP	C	C	T	rs141730568	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SF3B2	NM_006842	exon13	c.C1566T	p.F522F	.	.	61	4	47	0	C|1.000;T|0.000	92
SFMBT2	57713	hgsc.bcm.edu;bcgsc.ca	37	10	7247842	7247842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SFMBT2	NM_001029880	exon12	c.A1379G	p.D460G	.	.	95	5	144	0	.	141
SFXN4	119559	bcgsc.ca	37	10	120923654	120923654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SFXN4	NM_213649	exon2	c.T166C	p.F56L	.	.	217	6	207	2	.	91
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	249106273	249106273	+	Silent	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SH3BP5L	NM_030645	exon7	c.G1008C	p.L336L	.	.	83	12	63	0	.	90
SHANK2	22941	bcgsc.ca	37	11	70331740	70331740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHANK2	NM_133266	exon10	c.A2894G	p.K965R	.	.	212	7	235	0	.	94
SHANK2	22941	bcgsc.ca	37	11	70507741	70507741	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHANK2	NM_133266	exon1	c.A132G	p.K44K	.	.	159	6	180	1	.	94
SHANK3	85358	hgsc.bcm.edu	37	22	51160246	51160246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHANK3	NM_033517	exon21	c.T3943C	p.S1315P	.	.	23	4	53	0	.	69
SHF	90525	hgsc.bcm.edu;bcgsc.ca	37	15	45467612	45467612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHF	NM_138356	exon4	c.T457C	p.S153P	.	.	75	4	75	0	.	69
SIK1	150094	hgsc.bcm.edu;bcgsc.ca	37	21	44838374	44838374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIK1	NM_173354	exon12	c.A1510G	p.S504G	.	.	69	5	85	0	.	346
SIN3B	23309	hgsc.bcm.edu;bcgsc.ca	37	19	16952755	16952755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIN3B	NM_015260	exon4	c.C558A	p.F186L	.	.	143	6	168	0	.	228
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650005	232650005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIPA1L2	NM_020808	exon1	c.G1081T	p.A361S	.	.	70	48	61	0	.	95
SIRT2	22933	hgsc.bcm.edu	37	19	39389044	39389044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIRT2	NM_012237	exon2	c.A38G	p.Q13R	.	.	89	4	73	0	.	226
SKA3	221150	hgsc.bcm.edu	37	13	21742126	21742126	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SKA3	NM_001166017	exon5	c.743+1G>T	.	.	.	119	15	142	0	.	90
SKIV2L2	23517	bcgsc.ca	37	5	54711853	54711853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SKIV2L2	NM_015360	exon25	c.A2864G	p.E955G	.	.	221	6	217	0	.	92
SLC12A3	6559	hgsc.bcm.edu	37	16	56924197	56924197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC12A3	NM_001126108	exon19	c.A2297G	p.D766G	.	.	89	4	91	0	.	155
SLC12A5	57468	hgsc.bcm.edu;bcgsc.ca	37	20	44685068	44685068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC12A5	NM_001134771	exon23	c.A3044G	p.E1015G	.	.	87	4	80	0	.	156
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15067448	15067448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC1A6	NM_005071	exon6	c.G1009A	p.G337S	.	.	84	8	109	0	.	186
SLC25A53	401612	hgsc.bcm.edu	37	X	103349276	103349276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001012755	exon2	c.G665A	p.G222E	.	.	82	5	107	0	.	.
SLC28A1	9154	hgsc.bcm.edu	37	15	85476374	85476374	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC28A1	NM_004213	exon13	c.1084-2A>G	.	.	.	121	5	173	0	.	93
SLC2A7	155184	bcgsc.ca	37	1	9074835	9074835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC2A7	NM_207420	exon7	c.T808C	p.S270P	.	.	87	5	94	1	.	514
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32399138	32399138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC30A6	NM_001193513	exon3	c.A97G	p.K33E	.	.	271	103	367	0	.	90
SLC31A1	1317	hgsc.bcm.edu	37	9	116018546	116018546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC31A1	NM_001859	exon2	c.A118G	p.M40V	.	.	166	7	203	0	.	90
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79234066	79234066	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC38A10	NM_001037984	exon11	c.G1260A	p.L420L	.	.	50	17	63	0	.	70
SLC38A3	10991	hgsc.bcm.edu	37	3	50251833	50251833	+	Splice_Site	SNP	A	A	G	rs201228948		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC38A3	NM_006841	exon3	c.102-1A>G	.	.	.	61	1	68	0	.	67
SLC6A13	6540	hgsc.bcm.edu	37	12	352865	352865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC6A13	NM_016615	exon3	c.A317G	p.K106R	.	.	114	5	134	0	.	90
SLC7A13	157724	bcgsc.ca	37	8	87226771	87226771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC7A13	NM_138817	exon4	c.A1284G	p.L428L	.	.	140	5	82	0	.	90
SLC7A13	157724	hgsc.bcm.edu	37	8	87226642	87226642	+	Silent	SNP	C	C	T	rs202114931		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC7A13	NM_138817	exon4	c.G1413A	p.X471X	.	.	36	5	17	0	.	90
SLITRK3	22865	hgsc.bcm.edu	37	3	164906629	164906629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLITRK3	NM_014926	exon2	c.T1990C	p.F664L	.	.	98	4	109	0	.	100
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105750545	105750545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLK	NM_014720	exon2	c.A263G	p.H88R	.	.	127	37	114	0	.	549
SMARCD2	6603	hgsc.bcm.edu;bcgsc.ca	37	17	61914400	61914400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMARCD2	NM_001098426	exon4	c.G449A	p.R150Q	.	.	71	4	77	0	.	227
SMC6	79677	hgsc.bcm.edu;bcgsc.ca	37	2	17922879	17922879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMC6	NM_001142286	exon4	c.A238G	p.S80G	.	.	60	4	79	0	.	292
SMG1	23049	hgsc.bcm.edu	37	16	18849391	18849391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	SMG1,NS,carcinoma,+1	SMG1	NM_015092	exon45	c.A7358G	p.E2453G	.	.	123	5	144	0	.	1160
SMG6	23293	hgsc.bcm.edu	37	17	2202373	2202373	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMG6	NM_017575	exon2	c.T1674C	p.P558P	.	.	84	5	170	0	.	228
SMNDC1	10285	hgsc.bcm.edu	37	10	112054041	112054041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMNDC1	NM_005871	exon6	c.A584G	p.K195R	.	.	95	4	115	0	.	91
SMTN	6525	hgsc.bcm.edu	37	22	31487265	31487265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	SMTN,NS,NS,0	SMTN	NM_001207018	exon9	c.G1424T	p.R475L	.	.	37	2	37	0	.	154
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84311120	84311120	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNAP91	NM_001242792	exon15	c.A1194T	p.A398A	.	.	177	109	260	0	.	23
SNAPC4	6621	broad.mit.edu	37	9	139272401	139272401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNAPC4	NM_003086	exon21	c.G3878T	p.R1293L	.	.	18	4	26	0	.	90
SNRNP200	23020	hgsc.bcm.edu	37	2	96965077	96965077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNRNP200	NM_014014	exon6	c.T719C	p.L240P	.	.	100	5	119	0	.	162
SNX17	9784	bcgsc.ca	37	2	27596137	27596137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNX17	NM_014748	exon4	c.A280G	p.S94G	.	.	175	6	208	1	.	651
SNX5	27131	broad.mit.edu;bcgsc.ca	37	20	17930967	17930967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNX5	NM_014426	exon7	c.T683C	p.V228A	.	.	300	7	290	2	.	289
SOGA2	23255	hgsc.bcm.edu	37	18	8718463	8718463	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_015210	exon3	c.A15G	p.R5R	.	.	93	4	125	0	.	.
SP3	6670	hgsc.bcm.edu;bcgsc.ca	37	2	174820457	174820457	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SP3	NM_003111	exon4	c.A783G	p.P261P	.	.	71	4	90	0	.	227
SPAG17	200162	hgsc.bcm.edu	37	1	118727720	118727720	+	Missense_Mutation	SNP	A	A	G	rs139383446	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPAG17	NM_206996	exon1	c.T61C	p.S21P	.	.	97	4	152	0	A|0.999;C|0.001	158
SPAG9	9043	hgsc.bcm.edu	37	17	49072445	49072445	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPAG9	NM_001130528	exon18	c.T2199C	p.S733S	.	.	79	4	97	0	.	659
SPATA22	84690	hgsc.bcm.edu	37	17	3365782	3365782	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPATA22	NM_032598	exon5	c.T324C	p.G108G	.	.	64	4	122	0	.	90
SPATS1	221409	hgsc.bcm.edu	37	6	44336153	44336153	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPATS1	NM_145026	exon6	c.A612G	p.P204P	.	.	88	4	62	0	.	91
SPECC1	92521	hgsc.bcm.edu	37	17	20108053	20108053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPECC1	NM_001033553	exon4	c.G691A	p.E231K	.	.	142	7	158	0	.	639
SPEN	23013	hgsc.bcm.edu	37	1	16254866	16254866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPEN	NM_015001	exon11	c.T2131C	p.S711P	.	.	113	5	130	0	.	298
SPEN	23013	hgsc.bcm.edu	37	1	16255354	16255354	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPEN	NM_015001	exon11	c.A2619G	p.E873E	.	.	91	4	104	0	.	298
SPOP	8405	hgsc.bcm.edu	37	17	47677854	47677854	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPOP	NM_001007228	exon10	c.G1011A	p.G337G	.	.	82	4	89	0	.	660
SPTBN1	6711	hgsc.bcm.edu	37	2	54753654	54753654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTBN1	NM_003128	exon2	c.G99T	p.E33D	.	.	95	4	103	0	.	140
SPTBN5	51332	hgsc.bcm.edu	37	15	42167762	42167762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTBN5	NM_016642	exon22	c.T4076C	p.L1359P	.	.	97	4	117	0	.	91
SPTLC3	55304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13071736	13071736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTLC3	NM_018327	exon5	c.T613A	p.L205M	.	.	157	53	201	0	.	90
SQRDL	58472	hgsc.bcm.edu;bcgsc.ca	37	15	45965905	45965905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SQRDL	NM_021199	exon5	c.A560G	p.E187G	.	.	109	5	130	0	.	91
SRGAP3	9901	hgsc.bcm.edu	37	3	9146431	9146431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SRGAP3	NM_014850	exon3	c.T356C	p.I119T	.	.	99	4	110	0	.	344
SRPK2	6733	bcgsc.ca	37	7	104773477	104773477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SRPK2	NM_182692	exon12	c.G1618A	p.A540T	.	.	211	7	234	0	.	805
SSUH2	51066	hgsc.bcm.edu	37	3	8669446	8669446	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	C3orf32,shoulder,malignant_melanoma,-1	.	NM_001256748	exon8	c.A612G	p.G204G	.	.	132	7	138	0	.	.
ST3GAL4	6484	bcgsc.ca	37	11	126276405	126276405	+	Silent	SNP	C	C	T	rs201871612		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ST3GAL4	NM_001254757	exon3	c.C54T	p.V18V	.	.	208	8	250	1	C|0.999;T|0.000	90
ST8SIA4	7903	hgsc.bcm.edu;bcgsc.ca	37	5	100222086	100222086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ST8SIA4	NM_175052	exon3	c.A464G	p.E155G	.	.	169	7	201	0	.	153
STAG3	10734	hgsc.bcm.edu	37	7	99800175	99800175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STAG3	NM_012447	exon25	c.A2662G	p.M888V	.	.	57	4	88	0	.	543
STAU1	6780	hgsc.bcm.edu	37	20	47734536	47734536	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STAU1	NM_017453	exon11	c.A1287G	p.G429G	.	.	86	5	113	0	.	230
STK11IP	114790	hgsc.bcm.edu	37	2	220470738	220470738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STK11IP	NM_052902	exon9	c.A839G	p.H280R	.	.	116	5	172	0	.	91
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80553709	80553709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STMN2	NM_007029	exon3	c.T212C	p.L71S	.	.	246	35	122	0	.	515
STX7	8417	hgsc.bcm.edu;bcgsc.ca	37	6	132796761	132796761	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STX7	NM_003569	exon3	c.T126C	p.P42P	.	.	62	4	63	0	.	90
SUPT20H	55578	hgsc.bcm.edu	37	13	37586423	37586423	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_017569	exon24	c.A2007G	p.Q669Q	.	.	50	5	53	0	.	.
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	17	27025001	27025001	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SUPT6H	NM_003170	exon32	c.A4401G	p.E1467E	.	.	58	4	47	0	.	93
SUPV3L1	6832	hgsc.bcm.edu	37	10	70968547	70968547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SUPV3L1	NM_003171	exon15	c.A2117G	p.Q706R	.	.	86	4	155	0	.	227
SV2C	22987	hgsc.bcm.edu	37	5	75505685	75505685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SV2C	NM_014979	exon4	c.A886C	p.M296L	.	.	79	4	106	0	.	91
SVEP1	79987	hgsc.bcm.edu	37	9	113169046	113169046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SVEP1	NM_153366	exon38	c.A8834G	p.K2945R	.	.	97	4	118	0	.	75
SYN1	6853	hgsc.bcm.edu	37	X	47464463	47464463	+	Missense_Mutation	SNP	C	C	T	rs143341539		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SYN1	NM_006950	exon5	c.G688A	p.A230T	.	.	95	4	114	0	C|1.000;T|0.000	131
SYNE2	23224	hgsc.bcm.edu	37	14	64630170	64630170	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SYNE2	NM_182914	exon89	c.C16350A	p.S5450S	.	.	97	4	106	0	.	164
SYNJ2	8871	bcgsc.ca	37	6	158495720	158495720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SYNJ2	NM_003898	exon16	c.A2242G	p.K748E	.	.	187	6	333	0	.	227
TACC2	10579	hgsc.bcm.edu	37	10	123842981	123842981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TACC2	NM_206862	exon4	c.A966G	p.E322E	.	.	61	5	64	0	.	296
TAF1	6872	hgsc.bcm.edu;bcgsc.ca	37	X	70601683	70601683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAF1	NM_004606	exon9	c.A1511G	p.N504S	.	.	70	4	111	0	.	900
TAF4B	6875	hgsc.bcm.edu	37	18	23915177	23915177	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAF4B	NM_005640	exon13	c.A2298G	p.L766L	.	.	96	4	119	0	.	71
TAOK1	57551	bcgsc.ca	37	17	27849397	27849397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAOK1	NM_020791	exon17	c.A2008G	p.I670V	.	.	128	5	140	0	.	521
TBC1D19	55296	hgsc.bcm.edu	37	4	26755500	26755500	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBC1D19	NM_018317	exon20	c.G1494T	p.L498L	.	.	97	4	113	0	.	153
TBC1D22A	25771	bcgsc.ca	37	22	47569194	47569194	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBC1D22A	NM_014346	exon13	c.C1479T	p.D493D	.	.	79	4	73	1	.	91
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186272765	186272765	+	Missense_Mutation	SNP	C	C	T	rs148338731	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBCCD1	NM_001134415	exon5	c.G968A	p.S323N	.	.	156	12	171	0	C|1.000;G|0.000	108
TBCD	6904	hgsc.bcm.edu	37	17	80828170	80828170	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBCD	NM_005993	exon14	c.C1389A	p.V463V	.	.	97	6	90	0	.	22
TBK1	29110	hgsc.bcm.edu	37	12	64878199	64878199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBK1	NM_013254	exon9	c.T1109C	p.F370S	.	.	98	4	141	0	.	1459
TBX21	30009	hgsc.bcm.edu	37	17	45822240	45822240	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBX21	NM_013351	exon6	c.C1116T	p.D372D	.	.	66	4	75	0	.	90
TCL1B	9623	hgsc.bcm.edu	37	14	96157133	96157133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TCL1B	NM_004918	exon2	c.T223C	p.S75P	.	.	95	6	76	0	.	91
TCP11	6954	broad.mit.edu	37	6	35087969	35087969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TCP11	NM_001093728	exon8	c.T1121C	p.I374T	.	.	154	5	150	0	.	95
TCTN3	26123	hgsc.bcm.edu	37	10	97453399	97453399	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TCTN3	NM_015631	exon2	c.256+2T>C	.	.	.	53	4	72	0	.	22
TDRKH	11022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151751633	151751633	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TDRKH	NM_001083965	exon5	c.A507G	p.L169L	.	.	506	76	399	0	.	92
TEK	7010	hgsc.bcm.edu;bcgsc.ca	37	9	27213566	27213566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEK	NM_000459	exon18	c.G2962A	p.G988S	.	.	72	4	92	0	.	1584
TENM3	55714	bcgsc.ca	37	4	183652211	183652211	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001080477	exon15	c.A2886G	p.P962P	.	.	169	5	251	0	.	.
TEX101	83639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43920080	43920080	+	Silent	SNP	C	C	T	rs149972012		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEX101	NM_031451	exon5	c.C63T	p.T21T	.	.	158	70	192	0	C|1.000;T|0.000	91
TEX29	121793	hgsc.bcm.edu	37	13	111995257	111995257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152324	exon5	c.A394G	p.S132G	.	.	52	4	68	0	.	.
TFAP2D	83741	bcgsc.ca	37	6	50719010	50719010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TFAP2D	NM_172238	exon7	c.A1112G	p.D371G	.	.	393	8	335	0	.	159
THAP2	83591	bcgsc.ca	37	12	72068007	72068007	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	THAP2	NM_031435	exon2	c.A96G	p.R32R	.	.	25	3	49	0	.	91
THOC5	8563	hgsc.bcm.edu	37	22	29917065	29917065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	THOC5	NM_001002878	exon14	c.T1199C	p.V400A	.	.	93	4	92	0	.	585
THSD7B	80731	hgsc.bcm.edu	37	2	138373887	138373887	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	THSD7B	NM_001080427	exon17	c.3477+1G>A	.	.	.	98	4	103	0	.	75
TIFAB	497189	hgsc.bcm.edu	37	5	134785146	134785146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TIFAB	NM_001099221	exon2	c.T484C	p.X162Q	.	.	81	4	90	0	.	22
TJP2	9414	hgsc.bcm.edu	37	9	71845029	71845029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TJP2	NM_001170416	exon11	c.G1645A	p.G549R	.	.	80	4	123	0	.	115
TLR8	51311	hgsc.bcm.edu;bcgsc.ca	37	X	12938298	12938298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TLR8	NM_138636	exon2	c.A1139G	p.Q380R	.	.	59	4	63	0	.	629
TLR9	54106	hgsc.bcm.edu	37	3	52257674	52257674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TLR9	NM_017442	exon2	c.T658C	p.S220P	.	.	87	4	113	0	.	587
TM6SF2	53345	hgsc.bcm.edu	37	19	19381177	19381177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TM6SF2	NM_001001524	exon3	c.T274C	p.F92L	.	.	90	4	102	0	.	44
TMEM102	284114	hgsc.bcm.edu	37	17	7340050	7340050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM102	NM_178518	exon3	c.C752T	p.P251L	.	.	72	4	105	0	.	90
TMEM107	84314	bcgsc.ca	37	17	8079546	8079546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM107	NM_183065	exon1	c.T59C	p.V20A	.	.	57	4	88	0	.	90
TMEM87A	25963	hgsc.bcm.edu;bcgsc.ca	37	15	42531866	42531866	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM87A	NM_015497	exon9	c.684+2T>C	.	.	.	82	4	99	0	.	91
TMEM95	339168	hgsc.bcm.edu;bcgsc.ca	37	17	7259191	7259191	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM95	NM_198154	exon3	c.T261C	p.Y87Y	.	.	72	4	130	0	.	90
TMPRSS3	64699	hgsc.bcm.edu	37	21	43808513	43808513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMPRSS3	NM_001256317	exon5	c.A445G	p.S149G	.	.	94	4	153	0	.	155
TNR	7143	hgsc.bcm.edu	37	1	175375825	175375825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TNR	NM_003285	exon3	c.T26C	p.V9A	.	.	171	7	122	0	.	324
TOP2B	7155	hgsc.bcm.edu	37	3	25654010	25654010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TOP2B	NM_001068	exon28	c.A3767G	p.K1256R	.	.	102	4	90	0	.	273
TOPBP1	11073	bcgsc.ca	37	3	133337174	133337174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TOPBP1	NM_007027	exon21	c.A3475G	p.S1159G	.	.	194	6	216	0	.	540
TOR1B	27348	hgsc.bcm.edu	37	9	132571282	132571282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TOR1B	NM_014506	exon4	c.T740C	p.L247P	.	.	78	4	95	0	.	90
TPM1	7168	hgsc.bcm.edu	37	15	63349281	63349281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TPM1	NM_001018007	exon3	c.T338C	p.L113P	.	.	84	4	86	0	.	90
TPPP3	51673	bcgsc.ca	37	16	67424515	67424515	+	Missense_Mutation	SNP	A	A	G	rs150607494		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TPPP3	NM_016140	exon4	c.T209C	p.I70T	.	.	90	6	111	1	A|1.000;G|0.000	90
TRAPPC2	6399	bcgsc.ca	37	X	13734164	13734164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRAPPC2	NM_001128835	exon5	c.A385G	p.I129V	.	.	220	6	246	0	.	130
TRIM23	373	hgsc.bcm.edu;bcgsc.ca	37	5	64890421	64890421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM23	NM_033228	exon10	c.A1472G	p.H491R	.	.	74	4	85	0	.	230
TRIM25	7706	hgsc.bcm.edu	37	17	54969476	54969476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM25	NM_005082	exon9	c.A1478G	p.Q493R	.	.	72	4	79	0	.	289
TRIM29	23650	hgsc.bcm.edu;bcgsc.ca	37	11	120007994	120007994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM29	NM_012101	exon1	c.T746C	p.F249S	.	.	94	5	96	0	.	291
TRIM3	10612	bcgsc.ca	37	11	6471831	6471831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM3	NM_001248006	exon10	c.A1891G	p.N631D	.	.	103	5	86	3	.	714
TRIM3	10612	hgsc.bcm.edu;bcgsc.ca	37	11	6471835	6471835	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM3	NM_001248006	exon10	c.T1887C	p.A629A	.	.	101	5	84	0	.	714
TRIM39	56658	hgsc.bcm.edu	37	6	30297109	30297109	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM39	NM_172016	exon3	c.T15C	p.S5S	.	.	76	4	63	0	.	161
TRIM46	80128	broad.mit.edu;bcgsc.ca	37	1	155148430	155148430	+	Missense_Mutation	SNP	C	C	G	rs112900706	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM46	NM_025058	exon3	c.C392G	p.P131R	.	.	294	9	235	1	C|0.500;T|0.500	228
TRIM8	81603	hgsc.bcm.edu	37	10	104414949	104414949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM8	NM_030912	exon3	c.A779G	p.K260R	.	.	96	4	124	0	.	227
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	189068092	189068092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIML1	NM_178556	exon6	c.G973A	p.D325N	.	.	109	5	127	0	.	156
TRPM2	7226	hgsc.bcm.edu	37	21	45833912	45833912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRPM2	NM_003307	exon20	c.T3101C	p.L1034P	.	.	52	4	75	0	.	92
TRPM8	79054	hgsc.bcm.edu	37	2	234854669	234854669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRPM8	NM_024080	exon7	c.T869C	p.I290T	.	.	77	4	95	0	.	94
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98609873	98609873	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRRAP	NM_001244580	exon72	c.C11475T	p.L3825L	.	.	63	12	81	0	.	923
TSC1	7248	hgsc.bcm.edu	37	9	135771990	135771990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TSC1,brain,glioma,+1	TSC1	NM_000368	exon23	c.A3127G	p.S1043G	.	.	36	3	55	1	.	1906
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72998514	72998514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TSHZ1	NM_005786	exon2	c.A1017G	p.K339K	.	.	66	5	97	0	.	90
TSHZ2	128553	hgsc.bcm.edu	37	20	51872705	51872705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TSHZ2	NM_173485	exon2	c.T2708C	p.V903A	.	.	108	5	136	0	.	232
TTC1	7265	bcgsc.ca	37	5	159476609	159476609	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTC1	NM_003314	exon6	c.A630G	p.E210E	.	.	280	7	267	0	.	91
TTC18	118491	bcgsc.ca	37	10	75058782	75058782	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTC18	NM_145170	exon15	c.A1605G	p.K535K	.	.	235	6	364	0	.	92
TTC3	7267	hgsc.bcm.edu	37	21	38573864	38573864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTC3	NM_001001894	exon46	c.T6067C	p.S2023P	.	.	74	4	86	0	.	590
TTK	7272	bcgsc.ca	37	6	80724235	80724235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTK	NM_003318	exon10	c.A1040G	p.E347G	.	.	264	7	442	0	.	1299
TTN	7273	hgsc.bcm.edu	37	2	179667053	179667053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTN	NM_001267550	exon3	c.A107G	p.E36G	.	.	120	5	146	0	.	636
TXNDC11	51061	hgsc.bcm.edu	37	16	11785663	11785663	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TXNDC11	NM_015914	exon8	c.A1383G	p.P461P	.	.	93	4	77	0	.	90
UBE2Q1	55585	hgsc.bcm.edu	37	1	154524627	154524627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UBE2Q1	NM_017582	exon8	c.T908C	p.L303P	.	.	151	6	104	0	.	226
UBE3A	7337	bcgsc.ca	37	15	25599766	25599766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UBE3A	NM_000462	exon11	c.T2198C	p.F733S	.	.	64	4	85	0	.	660
UBR1	197131	bcgsc.ca	37	15	43314923	43314923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UBR1	NM_174916	exon26	c.T2816C	p.F939S	.	.	127	5	148	0	.	91
UCK2	7371	broad.mit.edu;bcgsc.ca	37	1	165876937	165876937	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UCK2	NM_012474	exon7	c.C663T	p.I221I	.	.	317	8	291	1	.	91
UGDH	7358	hgsc.bcm.edu;bcgsc.ca	37	4	39510222	39510222	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UGDH	NM_003359	exon7	c.T870C	p.A290A	.	.	50	4	84	0	.	156
UHRF2	115426	hgsc.bcm.edu	37	9	6481676	6481676	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UHRF2	NM_152896	exon7	c.A1194G	p.E398E	.	.	95	4	120	0	.	721
UHRF2	115426	hgsc.bcm.edu;bcgsc.ca	37	9	6493855	6493855	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UHRF2	NM_152896	exon10	c.A1527G	p.G509G	.	.	74	4	120	0	.	721
UNC13B	10497	hgsc.bcm.edu	37	9	35389938	35389938	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC13B	NM_006377	exon24	c.A2943G	p.E981E	.	.	109	5	167	0	.	157
UNC13C	440279	hgsc.bcm.edu	37	15	54529885	54529885	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC13C	NM_001080534	exon5	c.A3225G	p.E1075E	.	.	82	4	112	0	.	51
UNC13C	440279	hgsc.bcm.edu	37	15	54707196	54707196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC13C	NM_001080534	exon17	c.A4864T	p.N1622Y	.	.	111	5	125	0	.	51
UNC45A	55898	hgsc.bcm.edu	37	15	91491925	91491925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC45A	NM_018671	exon13	c.G1779A	p.L593L	.	.	93	4	88	0	.	24
UQCR10	29796	hgsc.bcm.edu;bcgsc.ca	37	22	30165668	30165668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UQCR10	NM_013387	exon2	c.A152G	p.K51R	.	.	134	6	154	0	.	23
USP1	7398	hgsc.bcm.edu	37	1	62910512	62910512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	USP1	NM_001017415	exon6	c.G661A	p.E221K	.	.	197	13	294	0	.	659
USP24	23358	bcgsc.ca	37	1	55624565	55624565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	USP24	NM_015306	exon10	c.A1213G	p.N405D	.	.	170	6	260	0	.	521
USP27X	389856	hgsc.bcm.edu	37	X	49644929	49644929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	USP27X	NM_001145073	exon1	c.T19C	p.Y7H	.	.	56	4	92	0	.	472
USP36	57602	hgsc.bcm.edu	37	17	76798561	76798561	+	Missense_Mutation	SNP	T	T	C	rs75975389	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	USP36	NM_025090	exon17	c.A2867G	p.K956R	.	.	51	10	43	0	T|0.994;C|0.006	659
UTP14A	10813	bcgsc.ca	37	X	129058839	129058839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UTP14A	NM_006649	exon12	c.T1417C	p.S473P	.	.	167	6	147	0	.	132
UTP20	27340	broad.mit.edu;bcgsc.ca	37	12	101745919	101745919	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UTP20	NM_014503	exon39	c.A4971G	p.K1657K	.	.	338	8	314	0	.	155
VASN	114990	hgsc.bcm.edu	37	16	4432547	4432547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VASN	NM_138440	exon2	c.C1669T	p.P557S	.	.	46	4	34	0	.	68
VAV1	7409	hgsc.bcm.edu	37	19	6853046	6853046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VAV1	NM_005428	exon25	c.T2288C	p.F763S	.	.	95	5	107	0	.	1276
VAX2	25806	hgsc.bcm.edu	37	2	71148294	71148294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VAX2	NM_012476	exon2	c.C314T	p.T105I	.	.	94	3	144	0	.	90
VCAN	1462	bcgsc.ca	37	5	82868349	82868349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VCAN	NM_004385	exon13	c.C9850T	p.H3284Y	.	.	191	6	222	0	.	238
VPRBP	9730	bcgsc.ca	37	3	51456279	51456279	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPRBP	NM_014703	exon15	c.C3129T	p.F1043F	.	.	81	16	113	15	.	92
VPS13A	23230	hgsc.bcm.edu;bcgsc.ca	37	9	79960046	79960046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS13A	NM_001018038	exon52	c.A7277G	p.Q2426R	.	.	88	4	104	0	.	161
VPS37C	55048	hgsc.bcm.edu;bcgsc.ca	37	11	60900811	60900811	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS37C	NM_017966	exon5	c.266-2A>G	.	.	.	61	4	69	0	.	90
VPS41	27072	hgsc.bcm.edu	37	7	38765881	38765881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS41	NM_014396	exon29	c.G2530A	p.G844R	.	.	93	4	110	0	.	93
VSIG10	54621	hgsc.bcm.edu	37	12	118506333	118506333	+	Silent	SNP	C	C	T	rs199991783		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_019086	exon8	c.G1416A	p.E472E	.	.	380	24	419	0	.	.
VSIG10	54621	hgsc.bcm.edu	37	12	118533406	118533406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_019086	exon2	c.A293G	p.E98G	.	.	92	5	83	0	.	.
VSTM1	284415	hgsc.bcm.edu;bcgsc.ca	37	19	54545427	54545427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM1	NM_198481	exon6	c.A511G	p.K171E	.	.	92	4	123	0	.	90
VSTM4	196740	hgsc.bcm.edu;bcgsc.ca	37	10	50256529	50256529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM4	NM_001031746	exon6	c.G769A	p.A257T	.	.	51	4	87	0	.	154
VWA8	23078	hgsc.bcm.edu	37	13	42306265	42306265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_015058	exon22	c.T2453C	p.L818P	.	.	32	4	51	0	.	.
WAPAL	23063	hgsc.bcm.edu	37	10	88259819	88259819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WAPAL	NM_015045	exon3	c.A1181G	p.E394G	.	.	113	5	163	0	.	91
WDFY3	23001	hgsc.bcm.edu;bcgsc.ca	37	4	85731416	85731416	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDFY3	NM_014991	exon14	c.T1969C	p.L657L	.	.	47	4	87	0	.	93
WDFY4	57705	hgsc.bcm.edu	37	10	49943958	49943958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDFY4	NM_020945	exon11	c.T1721C	p.I574T	.	.	60	4	67	0	.	22
WDR13	64743	hgsc.bcm.edu	37	X	48458002	48458002	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR13	NM_017883	exon4	c.A420G	p.S140S	.	.	84	4	92	0	.	132
WDR27	253769	hgsc.bcm.edu;bcgsc.ca	37	6	170002368	170002368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR27	NM_182552	exon23	c.A2371G	p.I791V	.	.	72	5	57	0	.	69
WDR31	114987	hgsc.bcm.edu;bcgsc.ca	37	9	116079110	116079110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR31	NM_001012361	exon11	c.T1023C	p.C341C	.	.	56	4	90	0	.	90
WDR43	23160	bcgsc.ca	37	2	29164396	29164396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR43	NM_015131	exon15	c.A1690G	p.K564E	.	.	132	5	126	1	.	69
WDR78	79819	broad.mit.edu;bcgsc.ca	37	1	67306354	67306354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR78	NM_207014	exon9	c.A1292G	p.E431G	.	.	93	5	151	0	.	92
WWOX	51741	hgsc.bcm.edu	37	16	78466543	78466543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WWOX	NM_016373	exon8	c.C950T	p.T317M	.	.	129	6	179	0	.	90
XDH	7498	hgsc.bcm.edu	37	2	31604573	31604573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XDH	NM_000379	exon12	c.T1058C	p.I353T	.	.	92	4	105	0	.	158
XKR6	286046	hgsc.bcm.edu	37	8	10756400	10756400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XKR6	NM_173683	exon3	c.T988C	p.S330P	.	.	43	5	111	0	.	92
XPO7	23039	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	21848326	21848326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XPO7	NM_015024	exon18	c.A1937G	p.E646G	.	.	21	4	88	0	.	273
XRCC4	7518	hgsc.bcm.edu	37	5	82499472	82499472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XRCC4	NM_003401	exon5	c.A584G	p.H195R	.	.	94	4	92	0	.	229
XYLB	9942	hgsc.bcm.edu	37	3	38442465	38442465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XYLB	NM_005108	exon18	c.G1522A	p.G508R	.	.	98	4	134	0	.	91
YLPM1	56252	hgsc.bcm.edu	37	14	75301993	75301993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YLPM1	NM_019589	exon20	c.A6320G	p.K2107R	.	.	100	4	106	0	.	71
YTHDC2	64848	hgsc.bcm.edu;bcgsc.ca	37	5	112927702	112927702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YTHDC2	NM_022828	exon28	c.A4039G	p.R1347G	.	.	87	4	84	0	.	92
YTHDF1	54915	hgsc.bcm.edu	37	20	61835049	61835049	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YTHDF1	NM_017798	exon4	c.T243C	p.P81P	.	.	102	5	124	0	.	92
ZBTB1	22890	bcgsc.ca	37	14	64990075	64990075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZBTB1	NM_014950	exon2	c.A1853G	p.E618G	.	.	155	5	172	0	.	91
ZC2HC1B	153918	hgsc.bcm.edu;bcgsc.ca	37	6	144207245	144207245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001013623	exon3	c.A167G	p.Q56R	.	.	111	5	154	0	.	.
ZC3H12B	340554	hgsc.bcm.edu;bcgsc.ca	37	X	64709115	64709115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZC3H12B	NM_001010888	exon1	c.T434C	p.L145P	.	.	74	4	78	0	.	131
ZC3H14	79882	bcgsc.ca	37	14	89061239	89061239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZC3H14	NM_207662	exon1	c.A169G	p.K57E	.	.	150	5	157	1	.	93
ZDHHC9	51114	hgsc.bcm.edu	37	X	128975901	128975901	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZDHHC9	NM_001008222	exon2	c.A21G	p.R7R	.	.	103	6	112	0	.	131
ZEB1	6935	hgsc.bcm.edu	37	10	31815839	31815839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZEB1	NM_001174096	exon9	c.A3025G	p.N1009D	.	.	66	4	77	0	.	518
ZEB2	9839	hgsc.bcm.edu;bcgsc.ca	37	2	145162558	145162558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZEB2	NM_014795	exon5	c.A437G	p.E146G	.	.	95	4	95	0	.	297
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77616406	77616406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFHX4	NM_024721	exon2	c.A83G	p.D28G	.	.	281	27	182	0	.	98
ZFP1	162239	hgsc.bcm.edu;bcgsc.ca	37	16	75203861	75203861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFP1	NM_153688	exon4	c.A853G	p.T285A	.	.	81	4	118	0	.	92
ZFP69	339559	hgsc.bcm.edu	37	1	40961674	40961674	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_198494	exon6	c.T1524C	p.S508S	.	.	96	4	123	0	.	.
ZFP82	284406	bcgsc.ca	37	19	36884387	36884387	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFP82	NM_133466	exon5	c.A855G	p.K285K	.	.	178	6	176	1	.	91
ZIM2	23619	hgsc.bcm.edu	37	19	57286250	57286250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZIM2	NM_015363	exon11	c.A1390G	p.R464G	.	.	79	4	86	0	.	28
ZIM2	23619	bcgsc.ca	37	19	57286317	57286317	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZIM2	NM_015363	exon11	c.T1323C	p.P441P	.	.	85	5	124	2	.	28
ZMYM4	9202	hgsc.bcm.edu	37	1	35884071	35884071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZMYM4	NM_005095	exon29	c.G4337T	p.R1446L	.	.	97	4	123	0	.	291
ZMYND10	51364	hgsc.bcm.edu	37	3	50380447	50380447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZMYND10	NM_015896	exon7	c.T602C	p.L201P	.	.	143	6	172	0	.	279
ZNF17	7565	bcgsc.ca	37	19	57932587	57932587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF17	NM_006959	exon3	c.A1727G	p.H576R	.	.	120	5	181	1	.	90
ZNF180	7733	hgsc.bcm.edu	37	19	44983588	44983588	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF180	NM_013256	exon4	c.A246G	p.T82T	.	.	92	4	133	0	.	92
ZNF182	7569	hgsc.bcm.edu	37	X	47842408	47842408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF182	NM_006962	exon6	c.T230C	p.L77P	.	.	75	4	81	0	.	132
ZNF215	7762	hgsc.bcm.edu;bcgsc.ca	37	11	6977409	6977409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF215	NM_013250	exon7	c.C1201T	p.H401Y	.	.	76	4	68	0	.	514
ZNF223	7766	hgsc.bcm.edu	37	19	44571110	44571110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF223	NM_013361	exon5	c.T1129C	p.C377R	.	.	86	4	142	0	.	91
ZNF267	10308	hgsc.bcm.edu	37	16	31927484	31927484	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF267	NM_003414	exon4	c.C1914T	p.G638G	.	.	69	4	92	0	.	138
ZNF273	10793	hgsc.bcm.edu	37	7	64389279	64389279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF273	NM_021148	exon4	c.C1573T	p.R525W	.	.	127	6	113	0	.	90
ZNF2	7549	hgsc.bcm.edu	37	2	95847047	95847047	+	Silent	SNP	G	G	A	rs112887855		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF2	NM_021088	exon5	c.G474A	p.R158R	.	.	48	5	59	0	G|0.500;A|0.500	90
ZNF292	23036	hgsc.bcm.edu	37	6	87964908	87964908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF292	NM_015021	exon8	c.A1561G	p.I521V	.	.	101	4	130	0	.	72
ZNF33B	7582	hgsc.bcm.edu	37	10	43089012	43089012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF33B	NM_006955	exon5	c.T1386C	p.T462T	.	.	98	4	164	0	.	90
ZNF37BP	100129482	bcgsc.ca	37	10	43015458	43015458	+	RNA	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	81	4	87	0	.	.
ZNF433	163059	bcgsc.ca	37	19	12126750	12126750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001080411	exon4	c.A932G	p.E311G	.	.	177	5	200	1	.	.
ZNF445	353274	bcgsc.ca	37	3	44490211	44490211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF445	NM_181489	exon8	c.A952G	p.T318A	.	.	156	5	143	1	.	91
ZNF469	84627	hgsc.bcm.edu	37	16	88499778	88499778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001127464	exon2	c.T5816C	p.L1939P	.	.	54	4	52	0	.	.
ZNF470	388566	hgsc.bcm.edu;bcgsc.ca	37	19	57088312	57088312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF470	NM_001001668	exon6	c.A515G	p.D172G	.	.	132	6	156	0	.	92
ZNF487P	642819	bcgsc.ca	37	10	43976901	43976901	+	RNA	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	.	.	.	102	4	87	0	.	.
ZNF506	440515	hgsc.bcm.edu	37	19	19917871	19917871	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF506	NM_001099269	exon2	c.T10C	p.L4L	.	.	87	4	112	0	.	68
ZNF527	84503	bcgsc.ca	37	19	37870075	37870075	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF527	NM_032453	exon3	c.A87G	p.E29E	.	.	172	6	228	0	.	70
ZNF543	125919	hgsc.bcm.edu	37	19	57839824	57839824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF543	NM_213598	exon4	c.A994G	p.I332V	.	.	67	4	98	0	.	92
ZNF596	169270	bcgsc.ca	37	8	196014	196014	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF596	NM_173539	exon6	c.A1167G	p.K389K	.	.	69	4	164	1	.	90
ZNF676	163223	hgsc.bcm.edu	37	19	22363103	22363103	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF676	NM_001001411	exon3	c.T1416C	p.A472A	.	.	73	4	93	0	.	90
ZNF689	115509	hgsc.bcm.edu	37	16	30615611	30615611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF689	NM_138447	exon3	c.T1477C	p.S493P	.	.	84	4	85	0	.	68
ZNF699	374879	hgsc.bcm.edu	37	19	9406618	9406618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF699	NM_198535	exon5	c.T1462C	p.S488P	.	.	94	4	136	0	.	68
ZNF714	148206	hgsc.bcm.edu	37	19	21299777	21299777	+	Missense_Mutation	SNP	G	G	A	rs111443257		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF714	NM_182515	exon5	c.G307A	p.E103K	.	.	256	13	291	0	.	67
ZNF717	100131827	hgsc.bcm.edu	37	3	75786895	75786895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001128223	exon5	c.A1879C	p.T627P	.	.	48	6	70	0	.	.
ZNF721	170960	bcgsc.ca	37	4	435624	435624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF721	NM_133474	exon3	c.G2632A	p.E878K	.	.	67	4	100	0	.	47
ZNF74	7625	hgsc.bcm.edu	37	22	20755034	20755034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF74	NM_003426	exon3	c.A233G	p.N78S	.	.	123	5	157	0	.	91
ZNF777	27153	hgsc.bcm.edu	37	7	149133833	149133833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF777	NM_015694	exon5	c.G1172A	p.G391E	.	.	90	5	94	0	.	136
ZNF782	158431	hgsc.bcm.edu	37	9	99580298	99580298	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF782	NM_001001662	exon6	c.A2007G	p.T669T	.	.	318	8	466	0	.	90
ZNF800	168850	bcgsc.ca	37	7	127017306	127017306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF800	NM_176814	exon4	c.A235G	p.R79G	.	.	126	6	139	0	.	23
ZNF816	125893	hgsc.bcm.edu	37	19	53454475	53454475	+	Missense_Mutation	SNP	C	C	T	rs79186164	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF816	NM_001202457	exon4	c.G553A	p.G185S	.	.	130	9	214	0	C|0.993;T|0.007	68
ZNF843	283933	hgsc.bcm.edu	37	16	31447207	31447207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF843	NM_001136509	exon2	c.T964C	p.S322P	.	.	81	6	83	0	.	68
ZNF844	284391	hgsc.bcm.edu	37	19	12186579	12186579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001136501	exon4	c.A644G	p.H215R	.	.	92	4	138	0	.	.
ZNF860	344787	hgsc.bcm.edu	37	3	32030625	32030625	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF860	NM_001137674	exon2	c.T54C	p.A18A	.	.	124	5	206	0	.	1
ZNF860	344787	hgsc.bcm.edu;bcgsc.ca	37	3	32032133	32032133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF860	NM_001137674	exon2	c.A1562G	p.Q521R	.	.	107	5	141	0	.	1
ZNF91	7644	bcgsc.ca	37	19	23545043	23545043	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF91	NM_003430	exon4	c.T738C	p.A246A	.	.	170	5	181	0	.	90
ZNF92	168374	hgsc.bcm.edu;bcgsc.ca	37	7	64864692	64864692	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF92	NM_152626	exon4	c.T1665C	p.H555H	.	.	82	4	106	0	.	514
ZZEF1	23140	hgsc.bcm.edu	37	17	3917468	3917468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZZEF1	NM_015113	exon51	c.T8329C	p.Y2777H	.	.	85	5	156	0	.	93
NUCB2	4925	hgsc.bcm.edu	37	11	17352479	17352480	+	Missense_Mutation	DNP	CA	CA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.Q402L	.	.	.	.	.	.	.	
C11orf40	143501	hgsc.bcm.edu	37	11	4592711	4592712	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.N199L	.	.	.	.	.	.	.	
EXOG	9941	hgsc.bcm.edu;bcgsc.ca	37	3	38539163	38539164	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.LT69FS	.	.	.	.	.	.	.	
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	57522850	57522851	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.N80F	.	.	.	.	.	.	.	
