Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS	16	bcgsc.ca	37	16	70310867	70310867	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AARS	NM_001605	exon4	c.333+2T>C	.	.	.	67	4	55	0	.	91
AASDH	132949	bcgsc.ca	37	4	57237788	57237788	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AASDH	NM_181806	exon5	c.A690G	p.Q230Q	.	.	70	4	55	0	.	94
ABCA10	10349	bcgsc.ca	37	17	67178316	67178316	+	Missense_Mutation	SNP	A	A	G	rs4968849	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCA10	NM_080282	exon23	c.T2747C	p.M916T	.	.	215	7	74	0	A|0.293;G|0.707	93
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66873752	66873752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCA8	NM_007168	exon31	c.G3987A	p.A1329A	.	.	120	23	42	0	.	93
ABCA9	10350	bcgsc.ca	37	17	67031556	67031556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCA9	NM_080283	exon8	c.T959C	p.L320P	.	.	245	7	98	0	.	95
ABCE1	6059	bcgsc.ca	37	4	146046219	146046219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCE1	NM_002940	exon17	c.A1718C	p.Y573S	.	.	243	7	162	0	.	91
ABHD12B	145447	bcgsc.ca	37	14	51370852	51370852	+	Missense_Mutation	SNP	C	C	G	rs34800262	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABHD12B	NM_001206673	exon12	c.C1003G	p.P335A	.	.	92	5	87	0	C|0.689;G|0.311	153
ACSBG2	81616	bcgsc.ca	37	19	6156510	6156510	+	Missense_Mutation	SNP	A	A	G	rs33937754	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ACSBG2	NM_030924	exon5	c.A455G	p.K152R	.	.	173	6	122	0	A|0.908;G|0.092	23
ACTL6A	86	bcgsc.ca	37	3	179298999	179298999	+	Silent	SNP	C	C	T	rs1132429	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ACTL6A	NM_004301	exon11	c.C1017T	p.D339D	.	.	222	8	119	0	A|0.000;C|0.356;G|0.000;T|0.644	91
ACTR3C	653857	broad.mit.edu	37	7	149983565	149983565	+	Missense_Mutation	SNP	T	T	C	rs76400975		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001164459	exon5	c.A362G	p.Q121R	.	.	138	13	73	0	T|0.500;C|0.500	.
ADAD1	132612	bcgsc.ca	37	4	123350785	123350785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADAD1	NM_139243	exon13	c.T1622C	p.M541T	.	.	88	4	96	0	.	90
ADAM21	8747	ucsc.edu	37	14	70924852	70924852	+	Silent	SNP	A	A	C	rs78990308		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADAM21	NM_003813	exon2	c.A636C	p.L212L	.	.	130	40	109	25	C|1.000;|0.000	92
ADAM21P1	145241	ucsc.edu	37	14	70713981	70713981	+	RNA	SNP	A	A	G	rs12586570	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	45	5	81	2	A|0.855;G|0.145	.
ADAM9	8754	bcgsc.ca	37	8	38948808	38948808	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADAM9	NM_003816	exon20	c.T2241C	p.S747S	.	.	63	4	56	0	.	227
ADAMTSL3	57188	bcgsc.ca	37	15	84651185	84651185	+	Silent	SNP	C	C	A	rs8031704	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADAMTSL3	NM_207517	exon21	c.C2805A	p.P935P	.	.	88	4	57	0	C|0.592;A|0.408	1153
ADAMTSL3	57188	bcgsc.ca	37	15	84651261	84651261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADAMTSL3	NM_207517	exon21	c.A2881G	p.I961V	.	.	46	4	45	0	.	1153
ADCK4	79934	ucsc.edu;bcgsc.ca	37	19	41209477	41209477	+	Silent	SNP	C	C	T	rs11538385	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADCK4	NM_024876	exon9	c.G768A	p.A256A	.	.	50	4	37	0	C|0.773;T|0.227	319
ADCY4	196883	bcgsc.ca	37	14	24799108	24799108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADCY4	NM_001198592	exon9	c.A1175G	p.D392G	.	.	62	4	60	0	.	93
ADRA2B	151	bcgsc.ca	37	2	96780787	96780787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ADRA2B	NM_000682	exon1	c.T1102C	p.F368L	.	.	112	5	69	1	.	229
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44149823	44149823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AEBP1	NM_001129	exon11	c.C1278A	p.D426E	.	.	138	14	57	0	.	90
AFAP1	60312	bcgsc.ca	37	4	7844953	7844953	+	Silent	SNP	G	G	A	rs28669852	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AFAP1	NM_001134647	exon5	c.C459T	p.D153D	.	.	122	6	58	0	G|0.942;A|0.058	90
AGAP1	116987	bcgsc.ca	37	2	236761396	236761396	+	Missense_Mutation	SNP	C	C	T	rs13006916	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AGAP1	NM_001244888	exon10	c.C1117T	p.R373C	.	.	328	16	132	0	C|0.485;T|0.515	93
AGO1	26523	bcgsc.ca	37	1	36372653	36372653	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_012199	exon12	c.T1515C	p.H505H	.	.	86	5	60	0	.	.
AGO3	192669	bcgsc.ca	37	1	36492768	36492768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_024852	exon12	c.A1460G	p.Q487R	.	.	122	12	86	5	.	.
AGO4	192670	bcgsc.ca	37	1	36297130	36297130	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_017629	exon8	c.T951C	p.C317C	.	.	148	7	114	1	.	.
AGO4	192670	bcgsc.ca	37	1	36316571	36316571	+	Silent	SNP	A	A	C	rs4652895	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_017629	exon17	c.A2394C	p.S798S	.	.	133	6	97	0	A|0.436;C|0.564	.
AGTR1	185	bcgsc.ca	37	3	148459481	148459481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AGTR1	NM_031850	exon4	c.A764G	p.K255R	.	.	102	5	67	0	.	90
AHCTF1	25909	hgsc.bcm.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AHCTF1	NM_015446	exon34	c.6518delA	p.N2173fs	.	.	2137	14	193	4	.	97
AIRE	326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45712255	45712255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AIRE	NM_000383	exon9	c.C1066T	p.R356W	.	.	32	11	28	0	.	91
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	4772503	4772503	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AJAP1	NM_018836	exon2	c.C573G	p.A191A	.	.	29	11	10	0	.	515
ALDH8A1	64577	bcgsc.ca	37	6	135260498	135260498	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ALDH8A1	NM_022568	exon4	c.T498C	p.A166A	.	.	61	4	37	0	.	94
ALPK2	115701	bcgsc.ca	37	18	56204768	56204768	+	Missense_Mutation	SNP	G	G	A	rs3809974	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ALPK2	NM_052947	exon5	c.C2651T	p.S884L	.	.	67	6	88	0	G|0.949;A|0.051	765
AMIGO3	386724	broad.mit.edu;ucsc.edu	37	3	49756547	49756547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AMIGO3	NM_198722	exon1	c.T352C	p.S118P	.	.	46	4	20	0	.	91
ANAPC2	29882	bcgsc.ca	37	9	140069560	140069560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANAPC2	NM_013366	exon13	c.T2303C	p.L768P	.	.	32	4	25	0	.	227
ANK3	288	bcgsc.ca	37	10	61994513	61994513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANK3	NM_020987	exon8	c.A830G	p.K277R	.	.	216	6	128	0	.	107
ANKRD13C	81573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70740488	70740488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD13C	NM_030816	exon11	c.G1309C	p.G437R	.	.	141	26	79	0	.	90
ANKRD20A5P	440482	ucsc.edu	37	18	14183734	14183734	+	RNA	SNP	A	A	G	rs62085005	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD20A5P	.	.	.	.	.	.	101	35	63	9	A|0.938;G|0.062	90
ANKRD30BP2	149992	ucsc.edu	37	21	14437963	14437963	+	RNA	SNP	T	T	G	rs75453617		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	41	21	28	12	G|1.000;|0.000	.
ANKRD30BP3	338579	bcgsc.ca	37	10	45667286	45667286	+	RNA	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	75	4	88	0	.	.
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94025298	94025298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD32	NM_032290	exon18	c.G2406T	p.K802N	.	.	82	25	66	0	.	92
ANKRD50	57182	bcgsc.ca	37	4	125593008	125593008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD50	NM_020337	exon4	c.T1424C	p.M475T	.	.	58	4	67	0	.	90
ANO8	57719	bcgsc.ca	37	19	17438595	17438595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANO8	NM_020959	exon14	c.T2321C	p.V774A	.	.	79	4	57	0	.	93
AP3B1	8546	bcgsc.ca	37	5	77523973	77523973	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AP3B1	NM_003664	exon4	c.C370T	p.L124L	.	.	86	4	52	0	.	90
AP5M1	55745	bcgsc.ca	37	14	57741077	57741077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_018229	exon2	c.G190A	p.D64N	.	.	77	4	77	0	.	.
APBB3	10307	bcgsc.ca	37	5	139942298	139942298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APBB3	NM_006051	exon4	c.T301C	p.S101P	.	.	45	4	42	0	.	92
APEX1	328	bcgsc.ca	37	14	20924867	20924867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APEX1	NM_080648	exon4	c.A287G	p.E96G	.	.	83	4	63	0	.	661
APOBEC4	403314	bcgsc.ca	37	1	183617105	183617105	+	Missense_Mutation	SNP	A	A	G	rs1174658	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APOBEC4	NM_203454	exon2	c.T812C	p.F271S	.	.	507	10	161	0	A|0.606;G|0.394	90
APOC3	345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116701502	116701502	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APOC3	NM_000040	exon3	c.C69T	p.A23A	.	.	38	6	47	0	.	68
AQP1	358	hgsc.bcm.edu;broad.mit.edu	37	7	30951862	30951862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP1	NM_198098	exon1	c.C338T	p.S113L	.	.	82	10	15	0	.	514
AQP4	361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24442273	24442273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP4	NM_001650	exon2	c.C320A	p.T107N	.	.	51	13	37	0	.	90
AQP7	364	bcgsc.ca	37	9	33386144	33386144	+	Silent	SNP	G	G	A	rs76209395	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP7	NM_001170	exon6	c.C456T	p.V152V	.	.	137	21	68	1	G|0.375;A|0.625	90
AQP7	364	bcgsc.ca	37	9	33386146	33386146	+	Missense_Mutation	SNP	C	C	A	rs76608797	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP7	NM_001170	exon6	c.G454T	p.V152F	.	.	140	23	68	0	C|0.785;A|0.215	90
ARHGAP10	79658	bcgsc.ca	37	4	148944461	148944461	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP10	NM_024605	exon19	c.G1764A	p.L588L	.	.	56	4	61	0	.	229
ARHGAP15	55843	bcgsc.ca	37	2	144194565	144194565	+	Silent	SNP	C	C	T	rs17230746	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP15	NM_018460	exon8	c.C657T	p.Y219Y	.	.	209	8	111	1	C|0.853;T|0.147	653
ARHGAP21	57584	bcgsc.ca	37	10	24880847	24880847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP21	NM_020824	exon22	c.A3971G	p.Q1324R	.	.	124	6	81	0	.	235
ARHGAP22	58504	ucsc.edu;bcgsc.ca	37	10	49667795	49667795	+	Silent	SNP	T	T	C	rs3853761	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP22	NM_001256024	exon5	c.A639G	p.P213P	.	.	42	7	28	1	T|0.096;C|0.904	228
ARHGAP28	79822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6887166	6887166	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP28	NM_001010000	exon11	c.C987T	p.H329H	.	.	106	27	91	0	.	91
ARHGEF19	128272	bcgsc.ca	37	1	16531661	16531661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGEF19	NM_153213	exon11	c.A1667G	p.E556G	.	.	198	13	102	2	.	229
ARHGEF28	64283	bcgsc.ca	37	5	73045745	73045745	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001080479	exon3	c.T117C	p.S39S	.	.	147	5	93	1	.	.
ARHGEF2	9181	bcgsc.ca	37	1	155934799	155934799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGEF2	NM_001162383	exon7	c.A704G	p.K235R	.	.	192	6	73	0	.	228
ARHGEF7	8874	bcgsc.ca	37	13	111862277	111862277	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGEF7	NM_001113511	exon5	c.T459C	p.S153S	.	.	200	6	85	0	.	232
ARID1A	8289	bcgsc.ca	37	1	27058023	27058027	+	Frame_Shift_Del	DEL	TGCGT	TGCGT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TGCGT	TGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARID1A	NM_006015	exon3	c.1731_1735del	p.577_579del	.	.	163	4	95	0	.	584
ARID4A	5926	bcgsc.ca	37	14	58833739	58833739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARID4A	NM_002892	exon23	c.A3662G	p.D1221G	.	.	128	5	126	1	.	231
ARID4B	51742	bcgsc.ca	37	1	235392546	235392546	+	Silent	SNP	T	T	C	rs12731746	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARID4B	NM_016374	exon11	c.A897G	p.E299E	.	.	170	6	124	0	T|0.545;C|0.455	228
ARMC4	55130	bcgsc.ca	37	10	28273953	28273953	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARMC4	NM_018076	exon4	c.T570C	p.I190I	.	.	67	4	46	0	.	96
ARSE	415	bcgsc.ca	37	X	2856155	2856155	+	Missense_Mutation	SNP	C	C	T	rs35143646	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARSE	NM_000047	exon9	c.G1270A	p.G424S	.	.	113	13	68	1	C|0.503;T|0.497	131
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	149677216	149677216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARSI	NM_001012301	exon2	c.G1271A	p.W424X	.	.	66	24	35	0	.	92
ASAP2	8853	bcgsc.ca	37	2	9531202	9531202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ASAP2	NM_003887	exon23	c.T2395C	p.S799P	.	.	83	5	41	0	.	90
ASB11	140456	bcgsc.ca	37	X	15332558	15332558	+	Silent	SNP	A	A	G	rs5935944	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ASB11	NM_001012428	exon1	c.T51C	p.R17R	.	.	47	4	55	0	A|0.680;0|0.003	289
ASH1L	55870	bcgsc.ca	37	1	155447808	155447808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ASH1L	NM_018489	exon3	c.A4853G	p.N1618S	.	.	109	5	52	0	.	234
ASUN	55726	bcgsc.ca	37	12	27087562	27087562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_018164	exon3	c.T227C	p.V76A	.	.	165	5	92	0	.	.
ASXL2	55252	hgsc.bcm.edu	37	2	26101043	26101044	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ASXL2	NM_018263	exon1	c.49_50insC	p.A17fs	.	.	126	9	36	0	.	23
ATAD3B	83858	ucsc.edu	37	1	1420527	1420527	+	Silent	SNP	G	G	T	rs1781156	byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATAD3B	NM_031921	exon8	c.G882T	p.L294L	.	.	124	47	44	22	G|0.992;T|0.008	44
ATG16L1	55054	bcgsc.ca	37	2	234183341	234183341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATG16L1	NM_030803	exon9	c.T871C	p.F291L	.	.	152	5	107	0	.	90
ATG4C	84938	bcgsc.ca	37	1	63299781	63299781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATG4C	NM_178221	exon8	c.T1006C	p.F336L	.	.	88	4	78	0	.	91
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	25959333	25959333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP10A	NM_024490	exon10	c.G1832A	p.R611Q	.	.	31	12	16	0	.	139
ATP13A2	23400	bcgsc.ca	37	1	17328551	17328551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP13A2	NM_022089	exon8	c.A683G	p.Y228C	.	.	69	5	51	1	.	93
ATP1A4	480	hgsc.bcm.edu	37	1	160134106	160134106	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP1A4	NM_144699	exon7	c.939delT	p.T313fs	.	.	1880	9	192	1	.	94
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	28913552	28913552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP2A1	NM_004320	exon17	c.T2369C	p.V790A	.	.	135	44	58	0	.	93
ATP5SL	55101	bcgsc.ca	37	19	41944237	41944237	+	Missense_Mutation	SNP	T	T	C	rs2231940	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP5SL	NM_001167867	exon2	c.A119G	p.N40S	.	.	165	6	86	0	T|0.639;C|0.360	135
ATP8A1	10396	bcgsc.ca	37	4	42629038	42629038	+	Silent	SNP	C	C	T	rs16854624	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP8A1	NM_001105529	exon2	c.G138A	p.L46L	.	.	242	9	115	0	C|0.910;T|0.090	92
ATP8B1	5205	bcgsc.ca	37	18	55322569	55322569	+	Silent	SNP	G	G	T	rs140407614	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP8B1	NM_005603	exon23	c.C2788A	p.R930R	.	.	69	4	74	0	G|1.000;A|0.000	587
ATP8B1	5205	bcgsc.ca	37	18	55338775	55338775	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP8B1	NM_005603	exon17	c.A1857G	p.K619K	.	.	98	5	89	0	.	587
ATRN	8455	bcgsc.ca	37	20	3564672	3564672	+	Silent	SNP	C	C	T	rs235540	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATRN	NM_139321	exon17	c.C2892T	p.Y964Y	.	.	201	6	83	0	C|0.239;T|0.761	154
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	63975996	63975996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATXN7	NM_000333	exon10	c.G1506T	p.E502D	.	.	110	19	57	0	.	90
AVL9	23080	bcgsc.ca	37	7	32598630	32598630	+	Missense_Mutation	SNP	T	T	A	rs2290213	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AVL9	NM_015060	exon10	c.T769A	p.C257S	.	.	238	8	84	0	A|0.150;C|0.000;T|0.850	90
AXL	558	ucsc.edu;bcgsc.ca	37	19	41736911	41736911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AXL	NM_021913	exon5	c.A626G	p.N209S	.	.	32	4	28	0	.	1403
B3GALNT2	148789	bcgsc.ca	37	1	235622065	235622065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	B3GALNT2	NM_152490	exon8	c.T871C	p.S291P	.	.	80	4	67	0	.	153
BACH1	571	bcgsc.ca	37	21	30714760	30714760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BACH1	NM_206866	exon5	c.T1817C	p.I606T	.	.	63	4	77	0	.	92
BACH1	571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30699058	30699058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BACH1	NM_206866	exon3	c.G913A	p.E305K	.	.	23	9	36	0	.	92
BAZ1B	9031	bcgsc.ca	37	7	72912872	72912872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BAZ1B	NM_032408	exon4	c.A526G	p.K176E	.	.	359	8	128	0	.	159
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	.	.	229	120	92	0	.	159
BCAS1	8537	bcgsc.ca	37	20	52645255	52645255	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BCAS1	NM_003657	exon4	c.C399T	p.D133D	.	.	81	4	50	0	.	652
BCHE	590	bcgsc.ca	37	3	165548490	165548490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BCHE	NM_000055	exon2	c.A332G	p.N111S	.	.	78	4	83	0	.	94
BCL6	604	bcgsc.ca	37	3	187446211	187446211	+	Missense_Mutation	SNP	C	C	T	rs2229362	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BCL6	NM_001134738	exon5	c.G1477A	p.A493T	.	.	97	6	49	0	C|0.782;T|0.218	848
BCLAF1	9774	bcgsc.ca	37	6	136582401	136582401	+	Splice_Site	SNP	A	A	T	rs62431282		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BCLAF1	NM_014739	exon13	c.2757+2T>A	.	.	.	210	52	127	7	.	228
BEND4	389206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	42145706	42145706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BEND4	NM_001159547	exon3	c.C793A	p.P265T	.	.	158	11	78	0	.	90
BLNK	29760	bcgsc.ca	37	10	97959855	97959855	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BLNK	NM_001258440	exon15	c.A1071G	p.E357E	.	.	176	6	68	0	.	92
BNC1	646	ucsc.edu;bcgsc.ca	37	15	83933193	83933193	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BNC1	NM_001717	exon4	c.T810C	p.H270H	.	.	43	4	57	0	.	93
BNIP2	663	bcgsc.ca	37	15	59963488	59963488	+	Silent	SNP	A	A	G	rs1135148	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BNIP2	NM_004330	exon7	c.T964C	p.L322L	.	.	45	4	51	0	A|0.703;G|0.297	228
BPI	671	bcgsc.ca	37	20	36952342	36952342	+	Missense_Mutation	SNP	C	C	T	rs5741804	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BPI	NM_001725	exon8	c.C839T	p.A280V	.	.	95	5	57	0	C|0.879;T|0.121	94
BPIFB1	92747	bcgsc.ca	37	20	31889095	31889095	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_033197	exon9	c.T804C	p.A268A	.	.	72	4	48	0	.	.
BPIFC	254240	bcgsc.ca	37	22	32831803	32831803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_174932	exon8	c.C812T	p.P271L	.	.	54	4	46	0	.	.
BTBD10	84280	bcgsc.ca	37	11	13435111	13435111	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BTBD10	NM_032320	exon6	c.T774C	p.S258S	.	.	87	4	61	0	.	90
BTBD10	84280	bcgsc.ca	37	11	13435114	13435114	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BTBD10	NM_032320	exon6	c.C771A	p.I257I	.	.	92	4	62	0	.	90
BTBD6	90135	ucsc.edu;bcgsc.ca	37	14	105715779	105715779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BTBD6	NM_033271	exon4	c.C389T	p.P130L	.	.	38	4	42	0	.	90
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98743690	98743690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf12	NM_015652	exon1	c.G2543A	p.C848Y	.	.	113	29	82	0	.	92
C10orf25	220979	bcgsc.ca	37	10	45496052	45496052	+	Missense_Mutation	SNP	T	T	C	rs137857403		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf25	NM_001039380	exon1	c.A256G	p.R86G	.	.	49	4	52	0	T|1.000;C|0.000	90
C10orf68	79741	bcgsc.ca	37	10	33093978	33093978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf68	NM_024688	exon11	c.A862G	p.R288G	.	.	125	5	83	0	.	47
C10orf90	118611	bcgsc.ca	37	10	128192905	128192905	+	Silent	SNP	G	G	A	rs149103581	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf90	NM_001004298	exon3	c.C864T	p.S288S	.	.	123	5	107	1	G|1.000;T|0.000	92
C11orf42	160298	bcgsc.ca	37	11	6232259	6232259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C11orf42	NM_173525	exon3	c.A989G	p.D330G	.	.	98	4	53	0	.	91
C12orf54	121273	bcgsc.ca	37	12	48886750	48886750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C12orf54	NM_152319	exon7	c.A214G	p.T72A	.	.	84	4	67	0	.	90
C14orf182	283551	bcgsc.ca	37	14	50459031	50459031	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C14orf182	NM_001012706	exon3	c.G315A	p.Q105Q	.	.	93	4	63	0	.	90
C15orf43	145645	bcgsc.ca	37	15	45270794	45270794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C15orf43	NM_152448	exon7	c.T631C	p.S211P	.	.	238	6	153	0	.	90
C16orf3	750	bcgsc.ca	37	16	90095620	90095620	+	Missense_Mutation	SNP	A	A	G	rs61740023	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C16orf3	NM_001214	exon1	c.T131C	p.V44A	.	.	51	10	26	0	A|0.970;G|0.030	90
C16orf71	146562	bcgsc.ca	37	16	4790273	4790273	+	Silent	SNP	G	G	A	rs859305	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C16orf71	NM_139170	exon4	c.G396A	p.E132E	.	.	121	7	56	0	G|0.414;A|0.586	68
C17orf80	55028	bcgsc.ca	37	17	71232881	71232881	+	Missense_Mutation	SNP	G	G	C	rs745142	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C17orf80	NM_001100621	exon3	c.G1260C	p.Q420H	.	.	142	7	79	0	G|0.493;C|0.507	91
C1orf141	400757	bcgsc.ca	37	1	67561095	67561095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C1orf141	NM_001276351	exon7	c.T426C	p.S142S	.	.	74	4	71	0	.	91
C1orf170	84808	ucsc.edu	37	1	915227	915227	+	RNA	SNP	A	A	G	rs13303355	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C1orf170	.	.	.	.	.	.	37	30	12	2	A|0.080;G|0.920	68
C2CD2L	9854	ucsc.edu;bcgsc.ca	37	11	118984632	118984632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C2CD2L	NM_014807	exon12	c.C1560T	p.P520P	.	.	34	4	36	0	.	68
C2orf83	56918	bcgsc.ca	37	2	228497686	228497686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C2orf83	NM_020161	exon1	c.A116G	p.Q39R	.	.	87	4	72	0	.	90
C2orf83	56918	bcgsc.ca	37	2	228497721	228497721	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C2orf83	NM_020161	exon1	c.T81C	p.V27V	.	.	109	5	78	0	.	90
C5orf46	389336	bcgsc.ca	37	5	147286054	147286054	+	Missense_Mutation	SNP	G	G	A	rs2250145	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C5orf46	NM_206966	exon1	c.C11T	p.S4L	.	.	192	6	114	0	G|0.523;A|0.477	90
C5orf60	285679	bcgsc.ca	37	5	179069912	179069912	+	Missense_Mutation	SNP	C	C	T	rs75942553	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001142306	exon4	c.G641A	p.S214N	.	.	239	9	121	0	C|0.934;T|0.066	.
C6orf118	168090	bcgsc.ca	37	6	165712951	165712951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C6orf118	NM_144980	exon4	c.A917G	p.Q306R	.	.	78	4	67	0	.	90
C9orf131	138724	bcgsc.ca	37	9	35044961	35044961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C9orf131	NM_203299	exon2	c.C2335T	p.H779Y	.	.	54	5	28	0	.	90
CACNA1S	779	bcgsc.ca	37	1	201022376	201022376	+	Silent	SNP	G	G	A	rs56183942	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CACNA1S	NM_000069	exon31	c.C3822T	p.I1274I	.	.	108	5	52	0	G|0.969;A|0.031	94
CADPS2	93664	bcgsc.ca	37	7	122269341	122269341	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CADPS2	NM_001167940	exon4	c.A828G	p.E276E	.	.	104	6	68	0	.	94
CAPN1	823	bcgsc.ca	37	11	64950970	64950970	+	Silent	SNP	C	C	T	rs17583	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CAPN1	NM_001198869	exon4	c.C363T	p.I121I	.	.	106	5	46	0	C|0.734;T|0.266	91
CAPN7	23473	bcgsc.ca	37	3	15275387	15275387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CAPN7	NM_014296	exon11	c.A1193G	p.H398R	.	.	93	4	66	0	.	91
CAPRIN2	65981	bcgsc.ca	37	12	30906358	30906358	+	Missense_Mutation	SNP	G	G	A	rs17688567	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CAPRIN2	NM_023925	exon1	c.C340T	p.P114S	.	.	170	7	88	0	G|0.953;A|0.047	92
CAPS2	84698	bcgsc.ca	37	12	75678811	75678811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CAPS2	NM_032606	exon16	c.T1502C	p.V501A	.	.	138	5	104	1	.	92
CBR1	873	bcgsc.ca	37	21	37443282	37443282	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CBR1	NM_001757	exon2	c.A324G	p.E108E	.	.	67	4	95	0	.	90
CBR4	84869	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169923357	169923357	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CBR4	NM_032783	exon5	c.401-1G>C	.	.	.	49	24	31	0	.	90
CBWD6	644019	hgsc.bcm.edu	37	9	69256781	69256887	+	Frame_Shift_Del	DEL	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001085457	exon3	c.244_338del	p.82_113del	.	.	1501	0	187	0	.	.
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	15601277	15601277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CC2D2A	NM_001080522	exon37	c.A4622G	p.D1541G	.	.	273	20	109	0	.	25
CCDC109B	55013	bcgsc.ca	37	4	110603784	110603784	+	Silent	SNP	T	T	C	rs3733611	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC109B	NM_017918	exon5	c.T498C	p.S166S	.	.	47	4	46	0	C|0.694;N|0.000	90
CCDC110	256309	bcgsc.ca	37	4	186379899	186379899	+	Missense_Mutation	SNP	G	G	C	rs35596415	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC110	NM_152775	exon6	c.C1842G	p.I614M	.	.	358	15	168	0	G|0.486;C|0.514	90
CCDC110	256309	bcgsc.ca	37	4	186380515	186380515	+	Missense_Mutation	SNP	G	G	A	rs11132306	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC110	NM_152775	exon6	c.C1226T	p.S409F	.	.	78	6	113	0	G|0.562;A|0.438	90
CCDC110	256309	bcgsc.ca	37	4	186380846	186380846	+	Missense_Mutation	SNP	A	A	T	rs7698680	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC110	NM_152775	exon6	c.T895A	p.L299M	.	.	74	4	83	0	A|0.555;T|0.445	90
CCDC110	256309	bcgsc.ca	37	4	186381165	186381165	+	Silent	SNP	G	G	A	rs7699724	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC110	NM_152775	exon6	c.C576T	p.D192D	.	.	95	6	99	0	G|0.547;A|0.453	90
CCDC114	93233	bcgsc.ca	37	19	48815261	48815261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC114	NM_144577	exon4	c.A362G	p.Q121R	.	.	58	4	54	0	.	91
CCDC136	64753	bcgsc.ca	37	7	128441526	128441526	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC136	NM_001201372	exon5	c.C783A	p.S261S	.	.	23	3	28	0	.	24
CCDC138	165055	bcgsc.ca	37	2	109429146	109429146	+	Silent	SNP	T	T	A	rs975597	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC138	NM_144978	exon8	c.T915A	p.A305A	.	.	146	5	102	0	T|0.364;A|0.636	90
CCDC155	147872	bcgsc.ca	37	19	49900964	49900964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC155	NM_144688	exon6	c.A457G	p.R153G	.	.	57	4	32	0	.	69
CCDC158	339965	bcgsc.ca	37	4	77305346	77305346	+	Silent	SNP	A	A	G	rs17001890	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC158	NM_001042784	exon5	c.T621C	p.H207H	.	.	90	5	75	0	A|0.776;G|0.224	96
CCDC160	347475	bcgsc.ca	37	X	133378835	133378835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC160	NM_001101357	exon2	c.A5G	p.D2G	.	.	127	5	80	0	.	40
CCDC168	643677	bcgsc.ca	37	13	103386116	103386116	+	Missense_Mutation	SNP	C	C	G	rs7982465	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001146197	exon4	c.G16931C	p.R5644T	.	.	291	8	130	0	C|0.033;G|0.967	.
CCDC170	80129	bcgsc.ca	37	6	151859314	151859314	+	Silent	SNP	A	A	G	rs4870034	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_025059	exon3	c.A321G	p.E107E	.	.	130	6	87	0	A|0.387;G|0.613	.
CCDC178	374864	bcgsc.ca	37	18	30672751	30672751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001105528	exon20	c.G2362A	p.D788N	.	.	201	7	141	0	.	.
CCDC39	339829	bcgsc.ca	37	3	180377529	180377529	+	Missense_Mutation	SNP	G	G	C	rs112738198	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC39	NM_181426	exon5	c.C545G	p.T182S	.	.	200	10	104	0	G|0.983;C|0.017	72
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80136965	80136965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC57	NM_198082	exon9	c.G1312A	p.E438K	.	.	123	24	49	0	.	24
CCDC67	159989	bcgsc.ca	37	11	93129408	93129408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC67	NM_181645	exon11	c.T1243C	p.S415P	.	.	92	5	84	0	.	91
CCDC74A	90557	ucsc.edu	37	2	132288362	132288362	+	Missense_Mutation	SNP	T	T	C	rs2599971	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC74A	NM_001258304	exon3	c.T632C	p.M211T	.	.	245	91	77	24	T|0.250;C|0.750	69
CCDC77	84318	bcgsc.ca	37	12	549831	549831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC77	NM_032358	exon11	c.C1090A	p.Q364K	.	.	68	4	59	0	.	91
CCDC88C	440193	bcgsc.ca	37	14	91806363	91806363	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC88C	NM_001080414	exon7	c.T489C	p.T163T	.	.	126	5	71	1	.	25
CCDC93	54520	bcgsc.ca	37	2	118766119	118766119	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC93	NM_019044	exon3	c.156+2T>C	.	.	.	71	4	46	0	.	154
CCNB3	85417	bcgsc.ca	37	X	50052284	50052284	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCNB3	NM_033031	exon5	c.A1115T	p.K372M	.	.	47	4	37	0	.	482
CCNB3	85417	bcgsc.ca	37	X	50053148	50053148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCNB3	NM_033031	exon5	c.C1979T	p.A660V	.	.	154	6	78	0	.	482
CCT2	10576	bcgsc.ca	37	12	69991789	69991789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCT2	NM_006431	exon13	c.G1273A	p.A425T	.	.	91	4	75	0	.	651
CD163L1	283316	bcgsc.ca	37	12	7548996	7548996	+	Missense_Mutation	SNP	C	C	G	rs4072796	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CD163L1	NM_174941	exon8	c.G1745C	p.G582A	.	.	45	13	16	1	C|0.893;G|0.107	100
CD180	4064	bcgsc.ca	37	5	66479904	66479904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CD180	NM_005582	exon3	c.A767G	p.E256G	.	.	80	4	79	0	.	91
CD226	10666	bcgsc.ca	37	18	67534632	67534632	+	Silent	SNP	C	C	T	rs72481819	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CD226	NM_006566	exon6	c.G846A	p.E282E	.	.	90	5	85	0	C|0.957;T|0.043	90
CD22	933	bcgsc.ca	37	19	35823780	35823780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CD22	NM_001185100	exon3	c.A365G	p.E122G	.	.	68	4	39	0	.	526
CD99	4267	bcgsc.ca	37	X	2632482	2632482	+	Silent	SNP	C	C	T	rs199866781		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CD99	NM_001122898	exon2	c.C87T	p.S29S	.	.	978	21	193	1	.	40
CDC27	996	bcgsc.ca	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDC27	NM_001114091	exon6	c.G601T	p.V201F	.	.	247	18	106	0	.	291
CDH11	1009	bcgsc.ca	37	16	65022114	65022114	+	Silent	SNP	C	C	T	rs28216	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDH11	NM_001797	exon7	c.G945A	p.S315S	.	.	188	6	135	0	C|0.714;T|0.286	852
CDH13	1012	bcgsc.ca	37	16	83065664	83065664	+	Silent	SNP	G	G	A	rs6565105	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDH13	NM_001220488	exon4	c.G348A	p.S116S	.	.	73	4	68	0	A|0.532;C|0.000;G|0.467	67
CDH23	64072	bcgsc.ca	37	10	73494013	73494013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDH23	NM_022124	exon32	c.A4121G	p.Q1374R	.	.	69	4	49	0	.	563
CDH7	1005	bcgsc.ca	37	18	63511176	63511176	+	Silent	SNP	T	T	C	rs2306675	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDH7	NM_004361	exon7	c.T1110C	p.D370D	.	.	126	6	114	0	T|0.756;C|0.244	94
CDH7	1005	bcgsc.ca	37	18	63530016	63530016	+	Missense_Mutation	SNP	A	A	G	rs2291343	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDH7	NM_004361	exon11	c.A1727G	p.N576S	.	.	67	4	75	0	A|0.381;G|0.619	94
CDHR5	53841	bcgsc.ca	37	11	618674	618674	+	Missense_Mutation	SNP	C	C	T	rs140290184	by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDHR5	NM_021924	exon13	c.G1885A	p.G629S	.	.	496	29	140	1	C|0.952;T|0.048	90
CDK11A	728642	ucsc.edu	37	1	1636355	1636355	+	Silent	SNP	A	A	G	rs2377226	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDK11A	NM_024011	exon13	c.T1446C	p.I482I	.	.	204	98	105	39	A|0.988;G|0.011	14
CDK19	23097	bcgsc.ca	37	6	110953280	110953280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDK19	NM_015076	exon6	c.G599T	p.R200L	.	.	82	4	61	0	.	548
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18622799	18622799	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDKL5	NM_003159	exon12	c.G1755A	p.L585L	.	.	49	32	36	0	.	838
CECR1	51816	bcgsc.ca	37	22	17672678	17672678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CECR1	NM_017424	exon4	c.A776G	p.H259R	.	.	73	4	49	0	.	91
CENPC1	1060	bcgsc.ca	37	4	68374597	68374597	+	Silent	SNP	C	C	T	rs1056789	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CENPC1	NM_001812	exon10	c.G1839A	p.S613S	.	.	158	6	99	0	C|0.328;T|0.672	205
CENPC1	1060	bcgsc.ca	37	4	68380215	68380215	+	Missense_Mutation	SNP	G	G	A	rs11250	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CENPC1	NM_001812	exon8	c.C1021T	p.L341F	.	.	265	8	156	0	G|0.299;A|0.701	205
CENPN	55839	bcgsc.ca	37	16	81061827	81061827	+	Missense_Mutation	SNP	G	G	A	rs2549887	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CENPN	NM_001100624	exon10	c.G862A	p.E288K	.	.	82	5	93	0	G|0.380;A|0.620	90
CEP170B	283638	bcgsc.ca	37	14	105344293	105344293	+	Silent	SNP	C	C	T	rs61995995	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001112726	exon4	c.C267T	p.F89F	.	.	63	5	52	0	C|0.593;T|0.407	.
CEP78	84131	bcgsc.ca	37	9	80879149	80879149	+	Silent	SNP	C	C	T	rs1057650	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CEP78	NM_001098802	exon13	c.C1545T	p.I515I	.	.	191	7	119	0	C|0.921;T|0.079	69
CERS4	79603	bcgsc.ca	37	19	8321849	8321849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_024552	exon9	c.T629C	p.V210A	.	.	63	4	44	0	.	.
CFHR1	3078	bcgsc.ca	37	1	196801042	196801042	+	Silent	SNP	G	G	T	rs4230	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CFHR1	NM_002113	exon6	c.G906T	p.R302R	.	.	267	10	170	0	G|0.520;T|0.480	90
CGREF1	10669	bcgsc.ca	37	2	27324422	27324422	+	Missense_Mutation	SNP	T	T	C	rs74360681	bycluster;byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CGREF1	NM_001166239	exon6	c.A677G	p.E226G	.	.	164	17	55	0	T|0.999;C|0.001	91
CHADL	150356	bcgsc.ca	37	22	41633199	41633199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CHADL	NM_138481	exon3	c.A1877G	p.N626S	.	.	66	4	44	0	.	68
CHML	1122	bcgsc.ca	37	1	241798631	241798631	+	Silent	SNP	C	C	T	rs3737604	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CHML	NM_001821	exon1	c.G438A	p.S146S	.	.	159	5	98	0	C|0.714;T|0.286	96
CHRDL1	91851	ucsc.edu;bcgsc.ca	37	X	109919506	109919506	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CHRDL1	NM_001143981	exon12	c.T1330C	p.L444L	.	.	39	4	26	0	.	130
CHST10	9486	bcgsc.ca	37	2	101014447	101014447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CHST10	NM_004854	exon5	c.A350G	p.D117G	.	.	80	4	54	0	.	91
CIB4	130106	bcgsc.ca	37	2	26805751	26805751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CIB4	NM_001029881	exon6	c.A469G	p.N157D	.	.	138	5	48	0	.	131
CKAP2L	150468	bcgsc.ca	37	2	113520146	113520146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CKAP2L	NM_152515	exon2	c.A38G	p.E13G	.	.	76	4	56	0	.	90
CKAP5	9793	hgsc.bcm.edu	37	11	46791586	46791587	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CKAP5	NM_014756	exon26	c.3249_3250insA	p.K1083fs	.	.	322	25	115	0	.	92
CLCNKA	1187	bcgsc.ca	37	1	16350331	16350331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLCNKA	NM_001257139	exon3	c.T137C	p.L46P	.	.	192	6	93	2	.	91
CLCNKB	1188	bcgsc.ca	37	1	16371067	16371067	+	Missense_Mutation	SNP	G	G	T	rs2015352	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLCNKB	NM_000085	exon2	c.G80T	p.R27L	.	.	91	4	56	0	G|0.454;T|0.546	91
CLDN10	9071	bcgsc.ca	37	13	96230185	96230185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLDN10	NM_006984	exon5	c.T604C	p.S202P	.	.	72	4	55	0	.	91
CLDN18	51208	bcgsc.ca	37	3	137717744	137717744	+	Missense_Mutation	SNP	G	G	A	rs41265445	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLDN18	NM_001002026	exon1	c.G34A	p.V12M	.	.	160	6	81	0	G|0.993;A|0.007	92
CLOCK	9575	bcgsc.ca	37	4	56310020	56310020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLOCK	NM_004898	exon20	c.T1736C	p.V579A	.	.	88	5	79	0	.	515
CLSTN2	64084	bcgsc.ca	37	3	140281723	140281723	+	Silent	SNP	C	C	T	rs11714465	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLSTN2	NM_022131	exon14	c.C2283T	p.S761S	.	.	75	5	58	0	C|0.555;T|0.445	157
CLUH	23277	ucsc.edu;bcgsc.ca	37	17	2595964	2595964	+	Silent	SNP	G	G	A	rs2302199	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_015229	exon21	c.C3222T	p.A1074A	.	.	43	10	27	0	G|0.545;A|0.455	.
CLVS2	134829	bcgsc.ca	37	6	123369790	123369790	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CLVS2	NM_001010852	exon4	c.A588G	p.G196G	.	.	145	5	96	0	.	27
CMIP	80790	bcgsc.ca	37	16	81685899	81685899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_198390	exon4	c.T569C	p.L190P	.	.	50	4	58	0	.	.
CMTM4	146223	bcgsc.ca	37	16	66656104	66656104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CMTM4	NM_178818	exon4	c.G484A	p.A162T	.	.	66	4	44	0	.	227
CMYA5	202333	bcgsc.ca	37	5	79025085	79025085	+	Missense_Mutation	SNP	A	A	G	rs72635618	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CMYA5	NM_153610	exon2	c.A497G	p.K166R	.	.	106	5	65	0	A|0.962;G|0.038	77
CMYA5	202333	bcgsc.ca	37	5	79028417	79028417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CMYA5	NM_153610	exon2	c.G3829A	p.E1277K	.	.	82	4	80	0	.	77
CNNM2	54805	bcgsc.ca	37	10	104814162	104814162	+	Silent	SNP	T	T	C	rs2275271	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNNM2	NM_199076	exon3	c.T1842C	p.S614S	.	.	73	4	97	1	T|0.572;C|0.428	515
CNNM3	26505	bcgsc.ca	37	2	97494794	97494794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNNM3	NM_017623	exon7	c.C1982T	p.S661F	.	.	74	4	40	0	.	91
CNOT1	23019	bcgsc.ca	37	16	58579274	58579274	+	Silent	SNP	C	C	T	rs246258	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNOT1	NM_206999	exon30	c.G4128A	p.L1376L	.	.	207	9	120	1	C|0.754;T|0.246	95
CNOT6	57472	bcgsc.ca	37	5	179998301	179998301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNOT6	NM_015455	exon11	c.G1330A	p.E444K	.	.	64	4	78	0	.	90
CNOT6L	246175	bcgsc.ca	37	4	78663447	78663447	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNOT6L	NM_144571	exon8	c.A720G	p.E240E	.	.	148	6	118	0	.	67
CNPPD1	27013	bcgsc.ca	37	2	220040330	220040330	+	Silent	SNP	A	A	G	rs1127101	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNPPD1	NM_015680	exon3	c.T243C	p.Y81Y	.	.	205	9	109	0	A|0.547;G|0.453	90
CNTN2	6900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205039578	205039578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNTN2	NM_005076	exon19	c.T2456C	p.V819A	.	.	35	7	21	0	.	91
CNTNAP3	79937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	39140553	39140553	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CNTNAP3	NM_033655	exon12	c.C1839A	p.G613G	.	.	593	114	172	1	.	91
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32151735	32151735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL16A1	NM_001856	exon28	c.G1841A	p.G614E	.	.	126	70	85	0	.	98
COL17A1	1308	bcgsc.ca	37	10	105819956	105819956	+	Silent	SNP	G	G	A	rs805701	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL17A1	NM_000494	exon14	c.C1062T	p.A354A	.	.	184	8	131	0	G|0.437;A|0.563	95
COL27A1	85301	bcgsc.ca	37	9	117002712	117002712	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL27A1	NM_032888	exon21	c.2782-2A>G	.	.	.	45	4	33	0	.	94
COL28A1	340267	bcgsc.ca	37	7	7516800	7516800	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL28A1	NM_001037763	exon14	c.T1176C	p.G392G	.	.	84	4	42	0	.	93
COL4A2	1284	bcgsc.ca	37	13	111160377	111160377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL4A2	NM_001846	exon47	c.T4690C	p.S1564P	.	.	114	6	57	1	.	95
COL4A3	1285	bcgsc.ca	37	2	228113176	228113176	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL4A3	NM_000091	exon9	c.A486G	p.E162E	.	.	86	4	52	0	.	132
COL4A6	1288	bcgsc.ca	37	X	107418906	107418906	+	Silent	SNP	A	A	G	rs4623610	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL4A6	NM_001847	exon29	c.T2811C	p.R937R	.	.	251	10	121	0	A|0.015;G|0.985	199
COL5A3	50509	bcgsc.ca	37	19	10084850	10084850	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL5A3	NM_015719	exon47	c.C3501T	p.S1167S	.	.	64	4	55	0	.	99
COL6A3	1293	bcgsc.ca	37	2	238296231	238296231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL6A3	NM_004369	exon4	c.A1306G	p.T436A	.	.	78	4	57	0	.	526
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	36565805	36565805	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL8A2	NM_005202	exon1	c.G39A	p.L13L	.	.	25	14	9	0	.	90
COL9A1	1297	ucsc.edu	37	6	70935659	70935659	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL9A1	NM_001851	exon37	c.T2557C	p.L853L	.	.	35	4	21	0	.	94
COLEC11	78989	bcgsc.ca	37	2	3691565	3691565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COLEC11	NM_001255985	exon8	c.T715C	p.F239L	.	.	61	4	28	0	.	90
COLGALT2	23127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183944304	183944304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_015101	exon3	c.G419A	p.R140Q	.	.	60	12	23	0	.	.
COPS6	10980	bcgsc.ca	37	7	99689273	99689273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COPS6	NM_006833	exon10	c.A845G	p.Q282R	.	.	82	4	48	0	.	658
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	7330	7330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361624	exon1	c.T1427C	p.F476S	.	.	137	21	27	0	.	.
COX2	5743	bcgsc.ca	37	MT	8143	8143	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361739	exon1	c.T558C	p.A186A	.	.	164	7	33	0	.	.
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9653	9653	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000362079	exon1	c.T447C	p.H149H	.	.	245	15	41	0	.	.
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9698	9698	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000362079	exon1	c.T492C	p.L164L	.	.	199	10	37	0	.	.
CPAMD8	27151	bcgsc.ca	37	19	17062841	17062841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPAMD8	NM_015692	exon20	c.A2587G	p.I863V	.	.	47	4	39	0	.	141
CPEB3	22849	bcgsc.ca	37	10	93952348	93952348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPEB3	NM_014912	exon3	c.A1051G	p.N351D	.	.	74	4	62	0	.	90
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9754230	9754230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPNE9	.	.	.	.	.	.	35	5	34	0	.	70
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145623090	145623090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPSF1	NM_013291	exon21	c.C2078G	p.S693C	.	.	41	10	15	0	.	91
CPSF7	79869	bcgsc.ca	37	11	61179285	61179285	+	Silent	SNP	G	G	A	rs3019198	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPSF7	NM_024811	exon8	c.C1338T	p.I446I	.	.	73	4	39	0	G|0.294;A|0.706	90
CPXCR1	53336	bcgsc.ca	37	X	88008621	88008621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPXCR1	NM_001184771	exon3	c.A206G	p.N69S	.	.	87	4	57	0	.	133
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207789962	207789962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CR1	NM_000651	exon41	c.A6704T	p.H2235L	.	.	173	42	111	0	.	93
CR2	1380	bcgsc.ca	37	1	207646898	207646898	+	Missense_Mutation	SNP	T	T	C	rs4308977	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CR2	NM_001006658	exon11	c.T1987C	p.S663P	.	.	210	6	114	0	T|0.664;C|0.336	232
CR2	1380	bcgsc.ca	37	1	207646923	207646923	+	Missense_Mutation	SNP	G	G	A	rs17616	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CR2	NM_001006658	exon11	c.G2012A	p.R671H	.	.	222	7	120	0	G|0.694;A|0.306	232
CRLF2	64109	bcgsc.ca	37	X	1331495	1331495	+	Silent	SNP	G	G	C	rs140859855	by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CRLF2	NM_022148	exon1	c.C33G	p.A11A	.	.	206	8	120	0	G|0.828;C|0.172	299
CSF1	1435	bcgsc.ca	37	1	110466338	110466338	+	Silent	SNP	C	C	A	rs333970	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CSF1	NM_000757	exon6	c.C1095A	p.T365T	.	.	68	5	52	1	C|0.554;A|0.446	91
CSMD2	114784	bcgsc.ca	37	1	34189822	34189822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CSMD2	NM_052896	exon19	c.G2856T	p.W952C	.	.	123	5	70	0	.	103
CTCF	10664	bcgsc.ca	37	16	67645245	67645245	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTCF	NM_006565	exon3	c.G510T	p.G170G	.	.	56	4	68	0	.	91
CTDSP1	58190	bcgsc.ca	37	2	219267781	219267781	+	Silent	SNP	C	C	T	rs2227255	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTDSP1	NM_021198	exon5	c.C402T	p.H134H	.	.	226	7	81	2	C|0.533;T|0.467	91
CTDSPL2	51496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44811383	44811383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTDSPL2	NM_016396	exon11	c.G1129A	p.E377K	.	.	109	27	75	0	.	90
CTNNA3	29119	bcgsc.ca	37	10	69281701	69281701	+	Missense_Mutation	SNP	A	A	T	rs61749223	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTNNA3	NM_001127384	exon5	c.T478A	p.S160T	.	.	122	5	90	0	A|0.981;T|0.019	234
CTTNBP2NL	55917	bcgsc.ca	37	1	112958844	112958844	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTTNBP2NL	NM_018704	exon3	c.A57G	p.E19E	.	.	71	4	45	0	.	92
CUBN	8029	bcgsc.ca	37	10	16911821	16911821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CUBN	NM_001081	exon59	c.T9268C	p.S3090P	.	.	129	5	90	0	.	166
CUBN	8029	bcgsc.ca	37	10	17145222	17145222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CUBN	NM_001081	exon13	c.C1432A	p.L478I	.	.	73	4	49	0	.	166
CUL9	23113	bcgsc.ca	37	6	43166374	43166374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CUL9	NM_015089	exon12	c.A2831G	p.Q944R	.	.	88	6	33	0	.	529
CWF19L1	55280	ucsc.edu;bcgsc.ca	37	10	102003453	102003453	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CWF19L1	NM_018294	exon11	c.1044+2T>C	.	.	.	38	4	31	0	.	90
CXorf58	254158	bcgsc.ca	37	X	23928489	23928489	+	Missense_Mutation	SNP	C	C	T	rs2707164	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CXorf58	NM_152761	exon2	c.C70T	p.R24C	.	.	95	6	81	0	0|0.003;T|0.393	130
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83129262	83129262	+	Missense_Mutation	SNP	G	G	A	rs201228346		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CYLC1	NM_021118	exon4	c.G1546A	p.D516N	.	.	94	33	84	0	G|0.999;A|0.001	112
CYP20A1	57404	bcgsc.ca	37	2	204154552	204154552	+	Missense_Mutation	SNP	C	C	T	rs1048013	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CYP20A1	NM_177538	exon10	c.C1036T	p.L346F	.	.	345	10	140	0	C|0.598;T|0.402	90
CYP2A6	1548	hgsc.bcm.edu	37	19	41354169	41354170	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CYP2A6	NM_000762	exon4	c.608_609del	p.203_203del	.	.	120	0	79	0	.	92
CYP2B6	1555	broad.mit.edu	37	19	41516036	41516036	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CYP2B6	NM_000767	exon6	c.T960C	p.V320V	.	.	60	7	33	0	.	92
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	14798	14798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361789	exon1	c.T52C	p.F18L	.	.	310	14	63	0	.	.
DAP3	7818	bcgsc.ca	37	1	155686853	155686853	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DAP3	NM_001199850	exon3	c.T102C	p.A34A	.	.	184	9	72	0	.	228
DCAF13	25879	bcgsc.ca	37	8	104432545	104432545	+	Missense_Mutation	SNP	A	A	G	rs3134253	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DCAF13	NM_015420	exon2	c.A580G	p.I194V	.	.	159	5	79	0	A|0.768;G|0.232	135
DCAF4	26094	bcgsc.ca	37	14	73422350	73422350	+	Silent	SNP	T	T	G	rs2806034	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DCAF4	NM_015604	exon12	c.T1125G	p.S375S	.	.	97	7	92	0	T|0.758;G|0.242	92
DCAF8L2	347442	ucsc.edu;bcgsc.ca	37	X	27766045	27766045	+	Missense_Mutation	SNP	A	A	G	rs5926895	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DCAF8L2	NM_001136533	exon1	c.A1033G	p.T345A	.	.	49	5	60	0	A|0.785;0|0.046	42
DCST1	149095	bcgsc.ca	37	1	155018446	155018446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DCST1	NM_152494	exon11	c.T1250C	p.I417T	.	.	96	4	45	0	.	92
DCTN3	11258	bcgsc.ca	37	9	34616087	34616087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DCTN3	NM_007234	exon4	c.G292T	p.V98F	.	.	50	4	38	0	.	90
DCUN1D4	23142	bcgsc.ca	37	4	52757982	52757982	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DCUN1D4	NM_015115	exon7	c.T471C	p.T157T	.	.	57	4	57	0	.	92
DDI2	84301	bcgsc.ca	37	1	15978240	15978240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DDI2	NM_032341	exon8	c.A1033G	p.T345A	.	.	104	6	79	0	.	44
DDR1	780	bcgsc.ca	37	6	30864829	30864829	+	Silent	SNP	T	T	C	rs1049623	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DDR1	NM_013994	exon13	c.T1908C	p.V636V	.	.	224	6	96	1	T|0.539;C|0.461	1403
DDX12P	440081	ucsc.edu	37	12	9580280	9580280	+	RNA	SNP	A	A	G	rs201256560	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	212	53	99	28	A|0.924;G|0.076	.
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134143603	134143603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DDX46	NM_014829	exon16	c.C2120T	p.A707V	.	.	90	24	77	0	.	227
DEF8	54849	bcgsc.ca	37	16	90030940	90030940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DEF8	NM_207514	exon12	c.A1393G	p.S465G	.	.	59	4	44	0	.	68
DENND1B	163486	bcgsc.ca	37	1	197576302	197576302	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DENND1B	NM_144977	exon13	c.A822G	p.R274R	.	.	58	4	30	0	.	44
DENND5B	160518	bcgsc.ca	37	12	31545236	31545236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DENND5B	NM_144973	exon19	c.T3431C	p.I1144T	.	.	73	4	50	0	.	24
DEPDC1	55635	hgsc.bcm.edu;broad.mit.edu	37	1	68955231	68955232	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DEPDC1	NM_017779	exon3	c.375_376insA	p.N125fs	.	.	333	29	157	0	.	90
DEPDC7	91614	bcgsc.ca	37	11	33054221	33054221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DEPDC7	NM_001077242	exon7	c.A1145G	p.N382S	.	.	90	4	64	1	.	92
DERL2	51009	bcgsc.ca	37	17	5384625	5384625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DERL2	NM_016041	exon4	c.C318A	p.F106L	.	.	75	4	72	0	.	90
DGKK	139189	bcgsc.ca	37	X	50129369	50129369	+	RNA	SNP	A	A	G	rs5961179	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DGKK	.	.	.	.	.	.	162	6	86	0	A|0.662;0|0.030	227
DHX32	55760	bcgsc.ca	37	10	127530325	127530325	+	Silent	SNP	T	T	C	rs3208565	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DHX32	NM_018180	exon7	c.A1530G	p.A510A	.	.	57	4	63	0	T|0.522;C|0.478	290
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	60498943	60498943	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DIAPH3	NM_001042517	exon18	c.T2136G	p.L712L	.	.	239	50	148	0	.	516
DIP2C	22982	bcgsc.ca	37	10	409233	409233	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DIP2C	NM_014974	exon21	c.G2496A	p.V832V	.	.	36	4	31	0	.	156
DISC1	27185	ucsc.edu	37	1	231906877	231906877	+	RNA	SNP	G	G	A	rs201159389		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DISC1	.	.	.	.	.	.	126	22	59	0	.	91
DLL3	10683	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39996002	39996002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DLL3	NM_016941	exon6	c.C1004G	p.S335C	.	.	135	28	51	1	.	1083
DMD	1756	bcgsc.ca	37	X	31676123	31676123	+	Missense_Mutation	SNP	T	T	C	rs139254609		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DMD	NM_004006	exon54	c.A8011G	p.R2671G	.	.	76	4	90	0	T|1.000;C|0.000	265
DMD	1756	bcgsc.ca	37	X	32486769	32486769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DMD	NM_004006	exon23	c.T3008C	p.V1003A	.	.	166	5	118	0	.	265
DNAH2	146754	bcgsc.ca	37	17	7721629	7721629	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAH2	NM_020877	exon68	c.10388-1G>T	.	.	.	91	4	67	0	.	102
DNAH2	146754	ucsc.edu;bcgsc.ca	37	17	7680159	7680159	+	Silent	SNP	G	G	A	rs62059684	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAH2	NM_020877	exon31	c.G5010A	p.A1670A	.	.	43	4	32	0	G|0.764;A|0.236	102
DNAH3	55567	bcgsc.ca	37	16	20976374	20976374	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAH3	NM_017539	exon53	c.A8832G	p.E2944E	.	.	210	6	98	0	.	167
DNAH3	55567	ucsc.edu	37	16	21038366	21038366	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAH3	NM_017539	exon38	c.T5523C	p.S1841S	.	.	38	10	12	1	.	167
DNAJA2	10294	bcgsc.ca	37	16	47005841	47005841	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAJA2	NM_005880	exon2	c.T105C	p.Y35Y	.	.	96	4	69	0	.	226
DNAJB8	165721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	128181899	128181899	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAJB8	NM_153330	exon3	c.C190T	p.L64L	.	.	120	14	56	0	.	226
DOC2A	8448	bcgsc.ca	37	16	30020524	30020524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOC2A	NM_003586	exon4	c.A416G	p.K139R	.	.	115	5	38	0	.	92
DOCK1	1793	bcgsc.ca	37	10	128821579	128821579	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOCK1	NM_001380	exon14	c.A1380G	p.K460K	.	.	121	5	102	0	.	698
DOCK8	81704	bcgsc.ca	37	9	286491	286491	+	Missense_Mutation	SNP	G	G	A	rs3209441	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOCK8	NM_203447	exon3	c.G187A	p.D63N	.	.	112	5	80	0	G|0.901;A|0.099	517
DOCK8	81704	bcgsc.ca	37	9	429780	429780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOCK8	NM_203447	exon36	c.A4552G	p.S1518G	.	.	60	4	52	0	.	517
DOCK9	23348	broad.mit.edu;bcgsc.ca	37	13	99534228	99534228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOCK9	NM_001130049	exon24	c.G2596T	p.A866S	.	.	145	8	60	0	.	90
DOLPP1	57171	bcgsc.ca	37	9	131846957	131846957	+	Silent	SNP	T	T	C	rs11541836	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOLPP1	NM_001135917	exon2	c.T87C	p.S29S	.	.	174	10	117	0	C|0.408;N|0.001	91
DOPEY1	23033	bcgsc.ca	37	6	83856999	83856999	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DOPEY1	NM_015018	exon26	c.T5721C	p.A1907A	.	.	217	6	100	0	.	155
DPF1	8193	bcgsc.ca	37	19	38713057	38713057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DPF1	NM_001135155	exon3	c.A319G	p.K107E	.	.	61	4	29	0	.	90
DSG2	1829	bcgsc.ca	37	18	29116339	29116339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSG2	NM_001943	exon11	c.T1598C	p.V533A	.	.	67	4	54	0	.	563
DSN1	79980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35383170	35383170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSN1	NM_001145315	exon10	c.G957A	p.Q319Q	.	.	74	17	33	0	.	92
DSPP	1834	bcgsc.ca	37	4	88536520	88536520	+	Silent	SNP	T	T	C	rs115476207	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSPP	NM_014208	exon5	c.T2706C	p.D902D	.	.	189	14	105	0	T|0.673;C|0.327	90
DSPP	1834	hgsc.bcm.edu	37	4	88536403	88536405	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TAG	TAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSPP	NM_014208	exon5	c.2589_2591del	p.863_864del	.	.	112	10	59	0	.	90
DTX3L	151636	bcgsc.ca	37	3	122287376	122287376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DTX3L	NM_138287	exon3	c.T440C	p.F147S	.	.	76	4	50	1	.	587
DUOXA1	90527	bcgsc.ca	37	15	45412321	45412321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DUOXA1	NM_144565	exon8	c.T752C	p.F251S	.	.	49	4	31	0	.	227
DYNC2H1	79659	bcgsc.ca	37	11	102992128	102992128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DYNC2H1	NM_001377	exon10	c.G1388T	p.C463F	.	.	76	4	83	0	.	68
DYNC2H1	79659	bcgsc.ca	37	11	103229027	103229027	+	Silent	SNP	T	T	C	rs2566913	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DYNC2H1	NM_001080463	exon84	c.T12117C	p.D4039D	.	.	109	6	86	0	T|0.487;C|0.513	68
DZIP1	22873	bcgsc.ca	37	13	96239867	96239867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DZIP1	NM_198968	exon20	c.A2144G	p.N715S	.	.	103	6	54	0	.	92
ECH1	1891	bcgsc.ca	37	19	39321806	39321806	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ECH1	NM_001398	exon3	c.A261G	p.R87R	.	.	64	4	58	1	.	91
EFHA2	286097	bcgsc.ca	37	8	16976269	16976269	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EFHA2	NM_181723	exon14	c.A1578G	p.E526E	.	.	69	4	41	0	.	91
EGF	1950	bcgsc.ca	37	4	110897340	110897340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EGF	NM_001963	exon13	c.A2002G	p.M668V	.	.	84	4	79	0	.	524
EGLN1	54583	bcgsc.ca	37	1	231556815	231556815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EGLN1	NM_022051	exon1	c.A820G	p.S274G	.	.	196	7	73	0	.	226
EIF2AK3	9451	bcgsc.ca	37	2	88913273	88913273	+	Missense_Mutation	SNP	G	G	C	rs867529	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EIF2AK3	NM_004836	exon2	c.C407G	p.S136C	.	.	85	4	51	0	G|0.764;C|0.236	361
EIF3A	8661	bcgsc.ca	37	10	120833288	120833288	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EIF3A	NM_003750	exon2	c.T211C	p.L71L	.	.	123	5	107	0	.	226
EIF4G3	8672	bcgsc.ca	37	1	21220061	21220061	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EIF4G3	NM_001198802	exon16	c.A2052G	p.T684T	.	.	44	4	59	0	.	91
ELOVL2	54898	bcgsc.ca	37	6	10990657	10990657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ELOVL2	NM_017770	exon6	c.T524C	p.L175P	.	.	76	4	52	0	.	90
ELOVL2	54898	bcgsc.ca	37	6	11000399	11000399	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ELOVL2	NM_017770	exon5	c.256-2A>G	.	.	.	151	5	87	0	.	90
EMB	133418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	49724007	49724007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EMB	NM_198449	exon2	c.C167T	p.S56F	.	.	78	16	55	0	.	90
EML5	161436	bcgsc.ca	37	14	89172624	89172624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EML5	NM_183387	exon11	c.G1804A	p.A602T	.	.	58	4	52	0	.	93
EML6	400954	bcgsc.ca	37	2	55074740	55074740	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001039753	exon8	c.T1167C	p.S389S	.	.	74	4	31	0	.	.
EP400NL	347918	bcgsc.ca	37	12	132588968	132588968	+	RNA	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	220	35	93	1	.	.
EPHA6	285220	broad.mit.edu;bcgsc.ca	37	3	97167482	97167482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EPHA6	NM_001080448	exon7	c.C1802A	p.P601Q	.	.	368	13	118	0	.	1561
EPN2	22905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19189061	19189061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EPN2	NM_014964	exon4	c.G724T	p.D242Y	.	.	160	37	57	1	.	91
EPPK1	83481	bcgsc.ca	37	8	144944176	144944176	+	Silent	SNP	T	T	C	rs12542653	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EPPK1	NM_031308	exon1	c.A3246G	p.E1082E	.	.	182	10	58	0	T|0.459;C|0.541	25
EQTN	54586	bcgsc.ca	37	9	27296705	27296705	+	Silent	SNP	A	A	G	rs3824406	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001161585	exon2	c.T108C	p.D36D	.	.	296	8	148	0	A|0.873;G|0.127	.
ERAL1	26284	bcgsc.ca	37	17	27185180	27185180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERAL1	NM_005702	exon5	c.T553C	p.S185P	.	.	239	6	98	0	.	91
ERAP1	51752	bcgsc.ca	37	5	96118866	96118866	+	Missense_Mutation	SNP	C	C	T	rs17482078	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERAP1	NM_001198541	exon15	c.G2174A	p.R725Q	.	.	160	5	82	0	C|0.859;T|0.141	70
ERAP1	51752	bcgsc.ca	37	5	96124330	96124330	+	Missense_Mutation	SNP	T	T	C	rs30187	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERAP1	NM_001198541	exon11	c.A1583G	p.K528R	.	.	208	6	103	0	C|0.606;N|0.001	70
ERAP2	64167	bcgsc.ca	37	5	96231000	96231000	+	Missense_Mutation	SNP	G	G	T	rs2549782	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERAP2	NM_001130140	exon7	c.G1176T	p.K392N	.	.	165	8	100	0	G|0.452;N|0.000	68
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1192560	1192560	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERC1	NM_178039	exon3	c.G900C	p.Q300H	.	.	38	9	49	0	.	660
ERCC6	2074	bcgsc.ca	37	10	50669569	50669569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERCC6	NM_000124	exon19	c.T3812C	p.I1271T	.	.	45	4	32	0	.	1153
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53670586	53670586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ESPL1	NM_012291	exon8	c.A1883T	p.H628L	.	.	42	14	15	0	.	228
ESPNP	284729	bcgsc.ca	37	1	17023109	17023109	+	RNA	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	146	5	62	0	.	.
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72233982	72233982	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EYA1	NM_172059	exon5	c.C405A	p.G135G	.	.	313	41	112	0	.	652
FAAH2	158584	bcgsc.ca	37	X	57475120	57475120	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAAH2	NM_174912	exon10	c.T1392C	p.P464P	.	.	98	4	71	0	.	133
FAM133B	257415	bcgsc.ca	37	7	92206465	92206465	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM133B	NM_152789	exon7	c.A417G	p.S139S	.	.	212	6	125	0	.	1
FAM151B	167555	bcgsc.ca	37	5	79817821	79817821	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM151B	NM_205548	exon5	c.536-1G>T	.	.	.	38	4	42	0	.	68
FAM160B2	64760	bcgsc.ca	37	8	21960368	21960368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_022749	exon17	c.G2158A	p.A720T	.	.	129	6	44	0	.	.
FAM168A	23201	bcgsc.ca	37	11	73120622	73120622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM168A	NM_015159	exon6	c.T505C	p.S169P	.	.	171	6	74	0	.	68
FAM194A	131831	bcgsc.ca	37	3	150421606	150421606	+	Missense_Mutation	SNP	T	T	A	rs140978408	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM194A	NM_152394	exon1	c.A80T	p.E27V	.	.	177	9	48	0	T|0.987;A|0.013	93
FAM194A	131831	broad.mit.edu	37	3	150421519	150421519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM194A	NM_152394	exon1	c.T167A	p.V56E	.	.	197	13	44	2	.	93
FAM194A	131831	hgsc.bcm.edu	37	3	150421537	150421548	+	In_Frame_Del	DEL	TCCTCCACCTCT	TCCTCCACCTCT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TCCTCCACCTCT	TCCTCCACCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM194A	NM_152394	exon1	c.138_149del	p.46_50del	.	.	161	41	37	0	.	93
FAM198A	729085	broad.mit.edu	37	3	43097710	43097710	+	Silent	SNP	A	A	G	rs664628	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM198A	NM_001129908	exon5	c.A1560G	p.L520L	.	.	93	6	72	1	A|0.589;G|0.411	68
FAM205A	259308	ucsc.edu	37	9	34726187	34726187	+	Silent	SNP	A	A	G	rs521611	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001141917	exon4	c.T1050C	p.H350H	.	.	289	95	139	34	A|0.791;G|0.209	.
FAM208A	23272	broad.mit.edu;bcgsc.ca	37	3	56703746	56703746	+	Silent	SNP	A	A	C	rs13094666	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001112736	exon5	c.T717G	p.V239V	.	.	180	12	99	0	A|0.623;C|0.377	.
FAM20A	54757	bcgsc.ca	37	17	66537091	66537091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM20A	NM_017565	exon8	c.T1118C	p.V373A	.	.	121	5	62	0	.	90
FAM46A	55603	bcgsc.ca	37	6	82459648	82459648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM46A	NM_017633	exon3	c.A1093G	p.S365G	.	.	142	5	66	0	.	90
FAM71C	196472	bcgsc.ca	37	12	100042003	100042003	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM71C	NM_153364	exon1	c.A51G	p.A17A	.	.	87	4	53	0	.	90
FAM71E2	284418	bcgsc.ca	37	19	55870789	55870789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001145402	exon9	c.T1447C	p.S483P	.	.	67	15	35	1	.	.
FAM83B	222584	bcgsc.ca	37	6	54805363	54805363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM83B	NM_001010872	exon5	c.A1594G	p.N532D	.	.	80	4	53	0	.	96
FAM90A1	55138	ucsc.edu	37	12	8375052	8375052	+	Missense_Mutation	SNP	A	A	G	rs17857269	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAM90A1	NM_018088	exon7	c.T761C	p.V254A	.	.	41	9	24	2	A|0.849;G|0.151	91
FAM92A1P2	403315	ucsc.edu;bcgsc.ca	37	4	183959226	183959226	+	RNA	SNP	T	T	G	rs2016910	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	41	4	56	0	T|0.661;G|0.339	.
FANCM	57697	bcgsc.ca	37	14	45618197	45618197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FANCM	NM_020937	exon4	c.A917G	p.Q306R	.	.	70	4	54	0	.	569
FAT4	79633	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	126369855	126369855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G7684A	p.A2562T	.	.	25	12	42	0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126371628	126371628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G9457C	p.D3153H	.	.	67	11	75	0	.	108
FBLN1	2192	bcgsc.ca	37	22	45937149	45937149	+	Silent	SNP	C	C	T	rs9682	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBLN1	NM_006487	exon9	c.C963T	p.I321I	.	.	219	6	107	0	C|0.673;T|0.327	515
FBLN2	2199	bcgsc.ca	37	3	13670481	13670481	+	Silent	SNP	A	A	G	rs2242023	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBLN2	NM_001004019	exon12	c.A2646G	p.T882T	.	.	125	6	50	0	A|0.310;G|0.690	91
FBLN5	10516	bcgsc.ca	37	14	92403302	92403302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBLN5	NM_006329	exon4	c.A368G	p.N123S	.	.	87	4	77	0	.	134
FBXO10	26267	bcgsc.ca	37	9	37532048	37532048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBXO10	NM_012166	exon4	c.T1427C	p.M476T	.	.	79	4	45	0	.	637
FBXO42	54455	bcgsc.ca	37	1	16641899	16641899	+	Silent	SNP	C	C	T	rs2273311	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBXO42	NM_018994	exon2	c.G15A	p.S5S	.	.	111	5	84	0	C|0.659;T|0.341	228
FBXO44	93611	bcgsc.ca	37	1	11721225	11721225	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBXO44	NM_033182	exon6	c.C663T	p.R221R	.	.	55	4	37	0	.	227
FBXW5	54461	ucsc.edu;bcgsc.ca	37	9	139836046	139836046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FBXW5	NM_018998	exon7	c.A1187G	p.D396G	.	.	32	4	23	0	.	226
FCAMR	83953	bcgsc.ca	37	1	207133044	207133044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FCAMR	NM_001170631	exon7	c.A1553G	p.K518R	.	.	75	4	49	0	.	91
FCGBP	8857	ucsc.edu	37	19	40368733	40368733	+	Silent	SNP	G	G	C	rs61732623	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FCGBP	NM_003890	exon28	c.C12615G	p.L4205L	.	.	81	12	38	0	G|0.281;C|0.719	98
FCGR2B	2213	ucsc.edu	37	1	161645052	161645052	+	Missense_Mutation	SNP	C	C	T	rs28651835		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FCGR2B	NM_004001	exon6	c.C766T	p.P256S	.	.	164	95	62	0	C|0.989;T|0.011	226
FDX1L	112812	bcgsc.ca	37	19	10426130	10426130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FDX1L	NM_001031734	exon3	c.T239C	p.I80T	.	.	50	4	36	0	.	23
FEM1C	56929	bcgsc.ca	37	5	114860847	114860847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FEM1C	NM_020177	exon3	c.T1012C	p.S338P	.	.	84	4	73	0	.	155
FER1L6	654463	bcgsc.ca	37	8	125025714	125025714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FER1L6	NM_001039112	exon15	c.A1865G	p.Q622R	.	.	66	4	32	0	.	100
FEZ1	9638	bcgsc.ca	37	11	125359377	125359377	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FEZ1	NM_022549	exon2	c.C297T	p.T99T	.	.	79	4	89	0	.	133
FGF10	2255	bcgsc.ca	37	5	44388803	44388803	+	Missense_Mutation	SNP	A	A	G	rs200141272		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FGF10	.	.	.	.	.	.	187	6	98	0	.	522
FGFR4	2264	bcgsc.ca	37	5	176518784	176518784	+	Silent	SNP	C	C	T	rs452885	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FGFR4	NM_022963	exon5	c.C702T	p.R234R	.	.	87	6	57	0	C|0.248;T|0.752	1460
FIP1L1	81608	bcgsc.ca	37	4	54265917	54265917	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FIP1L1	NM_030917	exon10	c.A726G	p.G242G	.	.	83	4	79	0	.	1083
FKBP15	23307	bcgsc.ca	37	9	115931703	115931703	+	Silent	SNP	G	G	A	rs3810910	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FKBP15	NM_015258	exon26	c.C3286T	p.L1096L	.	.	134	6	119	0	G|0.712;A|0.288	25
FKBPL	63943	hgsc.bcm.edu	37	6	32096751	32096763	+	Frame_Shift_Del	DEL	CTGAGGCTGCCCT	CTGAGGCTGCCCT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGAGGCTGCCCT	CTGAGGCTGCCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FKBPL	NM_022110	exon2	c.795_807del	p.265_269del	.	.	30	17	9	0	.	204
FLG	2312	ucsc.edu	37	1	152276626	152276626	+	Missense_Mutation	SNP	G	G	C	rs3126075		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FLG	NM_002016	exon3	c.C10736G	p.T3579R	.	.	516	150	154	43	G|0.716;C|0.284	106
FLG	2312	ucsc.edu	37	1	152280372	152280372	+	Silent	SNP	G	G	A	rs6664985	bycluster;byfrequency;by2hit2allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FLG	NM_002016	exon3	c.C6990T	p.H2330H	.	.	239	39	94	0	G|0.286;A|0.714	106
FLG2	388698	ucsc.edu	37	1	152328411	152328411	+	Silent	SNP	A	A	G	rs6679449	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FLG2	NM_001014342	exon3	c.T1851C	p.S617S	.	.	162	28	90	0	A|0.598;G|0.402	151
FMNL2	114793	bcgsc.ca	37	2	153405594	153405594	+	Silent	SNP	G	G	A	rs1155779	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FMNL2	NM_052905	exon4	c.G342A	p.L114L	.	.	203	8	93	0	G|0.375;A|0.625	516
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	147084806	147084806	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FMR1NB	NM_152578	exon2	c.A363C	p.A121A	.	.	204	13	113	0	.	131
FOXR2	139628	bcgsc.ca	37	X	55651001	55651001	+	Missense_Mutation	SNP	T	T	C	rs2375465	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FOXR2	NM_198451	exon1	c.T857C	p.V286A	.	.	85	6	49	0	T|0.212;C|0.788	227
FREM2	341640	bcgsc.ca	37	13	39424196	39424196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FREM2	NM_207361	exon9	c.A6401G	p.E2134G	.	.	58	4	36	0	.	100
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39265592	39265592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FREM2	NM_207361	exon1	c.A4111G	p.T1371A	.	.	91	10	76	0	.	100
FRG1	2483	bcgsc.ca	37	4	190878599	190878599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FRG1	NM_004477	exon6	c.A479G	p.N160S	.	.	590	38	170	3	.	90
FRG1B	284802	bcgsc.ca	37	20	29625950	29625950	+	RNA	SNP	G	G	A	rs78096528	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FRG1B	.	.	.	.	.	.	296	34	96	2	G|0.700;A|0.300	22
FRG1B	284802	ucsc.edu	37	20	29625935	29625935	+	RNA	SNP	A	A	G	rs62198354	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FRG1B	.	.	.	.	.	.	246	114	85	0	A|0.417;G|0.583	22
FSIP2	401024	bcgsc.ca	37	2	186671853	186671853	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FSIP2	NM_173651	exon17	c.T18087C	p.S6029S	.	.	94	4	71	0	.	90
FSIP2	401024	bcgsc.ca	37	2	186680105	186680105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FSIP2	NM_173651	exon19	c.A20600G	p.E6867G	.	.	272	8	125	0	.	90
FYB	2533	bcgsc.ca	37	5	39119723	39119723	+	Missense_Mutation	SNP	C	C	A	rs379707	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FYB	NM_001243093	exon15	c.G2182T	p.V728F	.	.	505	16	158	0	T|0.118;G|0.108	24
FZD9	8326	hgsc.bcm.edu;broad.mit.edu	37	7	72849249	72849250	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FZD9	NM_003508	exon1	c.912_913insCAG	p.I304delinsIQ	.	.	108	20	36	0	.	1082
G3BP2	9908	bcgsc.ca	37	4	76582850	76582850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	G3BP2	NM_012297	exon4	c.A242G	p.D81G	.	.	81	4	75	0	.	153
GAB2	9846	ucsc.edu;bcgsc.ca	37	11	77937800	77937800	+	Silent	SNP	G	G	A	rs2248407	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GAB2	NM_080491	exon4	c.C918T	p.F306F	.	.	94	11	78	0	G|0.738;A|0.262	663
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29574930	29574930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABBR1	NM_001470	exon17	c.G2058T	p.W686C	.	.	183	18	65	0	.	521
GABRA3	2556	ucsc.edu	37	X	151533067	151533067	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABRA3	.	.	.	.	.	.	43	4	28	0	.	131
GABRA5	2558	bcgsc.ca	37	15	27193125	27193125	+	Silent	SNP	A	A	G	rs2229942	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABRA5	NM_001165037	exon11	c.A1134G	p.T378T	.	.	111	5	80	0	A|0.978;G|0.022	91
GABRE	2564	bcgsc.ca	37	X	151138179	151138179	+	Missense_Mutation	SNP	A	A	C	rs1139916	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABRE	NM_004961	exon3	c.T304G	p.S102A	.	.	109	5	71	0	A|0.369;C|0.631	132
GABRG3	2567	bcgsc.ca	37	15	27772723	27772723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_033223	exon8	c.T1010C	p.L337P	.	.	148	5	82	0	.	.
GALNT18	374378	bcgsc.ca	37	11	11454166	11454166	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_198516	exon4	c.595+2T>C	.	.	.	80	4	63	0	.	.
GALNTL5	168391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	.	.	170	116	97	0	.	92
GALR1	2587	bcgsc.ca	37	18	74962645	74962645	+	Silent	SNP	T	T	C	rs5374	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GALR1	NM_001480	exon1	c.T141C	p.G47G	.	.	45	9	47	0	T|0.442;C|0.558	522
GAREML	150946	bcgsc.ca	37	2	26407179	26407179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001168241	exon4	c.G462T	p.M154I	.	.	82	4	33	0	.	.
GBP3	2635	bcgsc.ca	37	1	89478868	89478868	+	Missense_Mutation	SNP	G	G	A	rs113490655	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GBP3	NM_018284	exon6	c.C868T	p.R290C	.	.	145	6	77	1	G|0.857;A|0.143	92
GCAT	23464	bcgsc.ca	37	22	38205989	38205989	+	Missense_Mutation	SNP	T	T	C	rs2285178	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GCAT	NM_001171690	exon2	c.T230C	p.L77S	.	.	147	8	101	0	T|0.722;C|0.278	90
GCDH	2639	bcgsc.ca	37	19	13008173	13008173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GCDH	NM_013976	exon10	c.C1013G	p.T338R	.	.	69	4	50	0	.	90
GDPD2	54857	bcgsc.ca	37	X	69645230	69645230	+	Silent	SNP	C	C	T	rs45513993	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GDPD2	NM_017711	exon3	c.C132T	p.L44L	.	.	369	15	126	0	C|0.950;T|0.050	132
GEMIN5	25929	bcgsc.ca	37	5	154311669	154311669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GEMIN5	NM_015465	exon4	c.G651T	p.E217D	.	.	90	4	68	0	.	228
GHDC	84514	ucsc.edu	37	17	40344711	40344711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GHDC	NM_001142623	exon5	c.T437C	p.L146P	.	.	29	4	16	0	.	90
GHR	2690	bcgsc.ca	37	5	42711313	42711313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GHR	NM_001242399	exon7	c.A644G	p.D215G	.	.	129	6	63	0	.	659
GID4	79018	bcgsc.ca	37	17	17948475	17948475	+	Silent	SNP	G	G	A	rs2955355	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_024052	exon2	c.G453A	p.G151G	.	.	137	5	82	0	G|0.484;A|0.516	.
GINS1	9837	bcgsc.ca	37	20	25397755	25397755	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GINS1	NM_021067	exon3	c.A156G	p.S52S	.	.	51	4	40	0	.	46
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	121726310	121726310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLI2	NM_005270	exon5	c.C664T	p.R222W	.	.	102	11	30	0	.	954
GLIPR1	11010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75875766	75875766	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLIPR1	NM_006851	exon2	c.T327A	p.S109S	.	.	143	32	77	0	.	159
GLRA2	2742	bcgsc.ca	37	X	14627144	14627144	+	Silent	SNP	T	T	C	rs2229963	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLRA2	NM_001118885	exon8	c.T747C	p.H249H	.	.	78	4	70	0	0|0.003;C|0.269	131
GMCL1P1	64396	bcgsc.ca	37	5	177612796	177612796	+	RNA	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	64	4	76	0	.	.
GNAI1	2770	bcgsc.ca	37	7	79842157	79842157	+	Silent	SNP	T	T	C	rs10241877	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GNAI1	NM_002069	exon7	c.T846C	p.P282P	.	.	227	6	116	0	T|0.917;C|0.083	653
GNAI3	2773	bcgsc.ca	37	1	110134765	110134765	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GNAI3	NM_006496	exon8	c.T975C	p.C325C	.	.	225	6	111	0	.	228
GOT1	2805	bcgsc.ca	37	10	101166544	101166544	+	Silent	SNP	C	C	T	rs2234971	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GOT1	NM_002079	exon3	c.G363A	p.A121A	.	.	148	5	100	0	C|0.893;T|0.107	90
GP6	51206	bcgsc.ca	37	19	55525889	55525889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GP6	NM_001083899	exon8	c.T1424C	p.L475P	.	.	59	4	53	0	.	92
GPATCH2	55105	bcgsc.ca	37	1	217784348	217784348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GPATCH2	NM_018040	exon4	c.G901T	p.V301F	.	.	252	8	116	0	.	91
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	.	.	545	5	141	0	A|0.333;C|0.333;G|0.333	91
GPHN	10243	bcgsc.ca	37	14	67579747	67579747	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GPHN	NM_020806	exon16	c.T1485C	p.H495H	.	.	72	4	81	0	.	228
GPM6B	2824	bcgsc.ca	37	X	13801542	13801542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GPM6B	NM_001001995	exon4	c.T467C	p.V156A	.	.	49	4	61	0	.	130
GPR116	221395	bcgsc.ca	37	6	46832813	46832813	+	Silent	SNP	G	G	A	rs614826	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GPR116	NM_015234	exon14	c.C1956T	p.V652V	.	.	226	7	88	0	G|0.472;A|0.528	91
GPR126	57211	bcgsc.ca	37	6	142723938	142723938	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GPR126	NM_198569	exon13	c.A1926G	p.S642S	.	.	48	4	31	0	.	91
GPR158	57512	bcgsc.ca	37	10	25886832	25886832	+	Silent	SNP	G	G	T	rs112521647		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	GPR158,NS,NS,+1	GPR158	NM_020752	exon11	c.G2277T	p.T759T	.	.	83	4	50	0	A|0.000;G|0.999;T|0.000	141
GRAMD3	65983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125759319	125759319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRAMD3	NM_001146321	exon1	c.T2C	p.M1T	.	.	114	63	56	0	.	90
GRB14	2888	bcgsc.ca	37	2	165476253	165476253	+	Missense_Mutation	SNP	A	A	T	rs61748245	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRB14	NM_004490	exon2	c.T268A	p.F90I	.	.	289	10	123	0	A|0.485;T|0.515	420
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10132262	10132262	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRHL1	NM_198182	exon11	c.G1449A	p.Q483Q	.	.	162	65	66	0	.	92
GRIA3	2892	bcgsc.ca	37	X	122460034	122460034	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRIA3	NM_000828	exon4	c.A666G	p.E222E	.	.	93	4	43	1	.	134
GRIPAP1	56850	bcgsc.ca	37	X	48847497	48847497	+	Silent	SNP	T	T	C	rs11545861	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRIPAP1	NM_020137	exon7	c.A483G	p.E161E	.	.	99	4	50	0	T|0.713;C|0.287	227
GRM7	2917	bcgsc.ca	37	3	7188180	7188180	+	Silent	SNP	T	T	C	rs35106713	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRM7	NM_000844	exon2	c.T561C	p.S187S	.	.	111	8	66	0	T|0.991;C|0.009	526
GSK3B	2932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	119635000	119635000	+	Nonsense_Mutation	SNP	G	G	A	rs201787969		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GSK3B	NM_002093	exon5	c.C499T	p.R167X	.	.	77	8	47	0	.	978
GTF2A1	2957	bcgsc.ca	37	14	81658935	81658935	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GTF2A1	NM_015859	exon7	c.A861G	p.E287E	.	.	152	5	127	0	.	153
GTF2IRD2	84163	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	74212425	74212425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GTF2IRD2	NM_173537	exon16	c.C1426A	p.Q476K	.	.	2107	101	197	0	.	23
GUCY2C	2984	bcgsc.ca	37	12	14794082	14794082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GUCY2C	NM_004963	exon18	c.A2002G	p.I668V	.	.	140	5	76	0	.	338
HDGFL1	154150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	22570186	22570186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HDGFL1	NM_138574	exon1	c.G382A	p.E128K	.	.	94	38	28	0	.	90
HEATR1	55127	bcgsc.ca	37	1	236716959	236716959	+	Silent	SNP	C	C	T	rs2275685	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HEATR1	NM_018072	exon43	c.G6159A	p.S2053S	.	.	65	4	47	0	C|0.428;T|0.572	93
HEATR1	55127	bcgsc.ca	37	1	236717926	236717926	+	Missense_Mutation	SNP	T	T	C	rs2275687	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HEATR1	NM_018072	exon42	c.A6050G	p.E2017G	.	.	271	13	143	0	T|0.433;C|0.567	93
HEATR1	55127	bcgsc.ca	37	1	236719135	236719135	+	Silent	SNP	T	T	C	rs1885532	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HEATR1	NM_018072	exon39	c.A5619G	p.E1873E	.	.	139	8	91	0	T|0.153;C|0.847	93
HEATR1	55127	bcgsc.ca	37	1	236719193	236719193	+	Missense_Mutation	SNP	A	A	G	rs1885533	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HEATR1	NM_018072	exon39	c.T5561C	p.V1854A	.	.	132	6	106	0	A|0.421;C|0.000;G|0.578;T|0.000	93
HEATR1	55127	bcgsc.ca	37	1	236749649	236749649	+	Missense_Mutation	SNP	T	T	C	rs2794763	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HEATR1	NM_018072	exon15	c.A1819G	p.M607V	.	.	281	12	150	0	T|0.565;C|0.435	93
HECTD4	283450	bcgsc.ca	37	12	112631301	112631301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001109662	exon57	c.T8525C	p.L2842P	.	.	86	4	41	0	.	.
HELZ2	85441	ucsc.edu	37	20	62198232	62198232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001037335	exon7	c.C2479A	p.Q827K	.	.	50	4	27	0	.	.
HERC1	8925	bcgsc.ca	37	15	63916015	63916015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC1	NM_003922	exon73	c.T13520C	p.L4507P	.	.	54	4	33	0	.	666
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	28457606	28457606	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC2	NM_004667	exon43	c.A6910T	p.K2304X	.	.	921	161	185	0	.	234
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89591339	89591339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC3	NM_014606	exon16	c.A1847T	p.E616V	.	.	89	31	82	0	.	660
HGC6.3	0	hgsc.bcm.edu	37	6	168376895	168376895	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001129895	exon1	c.C438T	p.C146C	.	.	210	20	93	0	.	.
HHLA1	10086	bcgsc.ca	37	8	133092138	133092138	+	Missense_Mutation	SNP	G	G	A	rs2403730	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001145095	exon10	c.C752T	p.P251L	.	.	1045	21	176	0	G|0.754;A|0.246	.
HIST1H2BD	3017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26158595	26158595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HIST1H2BD	NM_021063	exon1	c.C198T	p.F66F	.	.	202	26	106	0	.	70
HLA-A	3105	hgsc.bcm.edu	37	6	29911899	29911900	+	Frame_Shift_Ins	INS	-	-	C	rs199474609		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-A	NM_002116	exon4	c.620_621insC	p.D207fs	.	.	271	15	115	0	.	92
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33053656	33053656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-DPB1	NM_002121	exon4	c.G747T	p.R249S	.	.	116	8	51	0	.	515
HLA-DQA1	3117	bcgsc.ca	37	6	32610009	32610009	+	Missense_Mutation	SNP	C	C	A	rs2308891	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-DQA1	NM_002122	exon3	c.C592A	p.Q198K	.	.	256	43	116	9	A|0.077;C|0.499;G|0.424	90
HMGXB3	22993	bcgsc.ca	37	5	149412136	149412136	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HMGXB3	NM_014983	exon11	c.A1953G	p.K651K	.	.	75	4	48	0	.	24
HMHB1	57824	bcgsc.ca	37	5	143200053	143200053	+	Missense_Mutation	SNP	C	C	T	rs161557	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HMHB1	NM_021182	exon2	c.C46T	p.H16Y	.	.	294	9	129	0	C|0.720;T|0.280	90
HNRNPCL1	343069	bcgsc.ca	37	1	12907777	12907777	+	Silent	SNP	T	T	C	rs28391533	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HNRNPCL1	NM_001013631	exon2	c.A366G	p.G122G	.	.	143	44	93	1	T|0.750;C|0.250	68
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907351	12907351	+	Silent	SNP	A	A	G	rs2359485		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HNRNPCL1	NM_001013631	exon2	c.T792C	p.D264D	.	.	192	29	103	0	A|0.500;G|0.500	68
HNRNPCL1	343069	ucsc.edu	37	1	12907379	12907379	+	Missense_Mutation	SNP	T	T	C	rs74055698	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HNRNPCL1	NM_001013631	exon2	c.A764G	p.D255G	.	.	200	19	109	0	T|0.756;C|0.244	68
HNRNPD	3184	bcgsc.ca	37	4	83278548	83278548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HNRNPD	NM_031370	exon5	c.G671T	p.G224V	.	.	77	4	81	0	.	22
HNRPLL	92906	bcgsc.ca	37	2	38796476	38796476	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HNRPLL	NM_138394	exon10	c.C1215T	p.C405C	.	.	96	5	51	0	.	91
HPGD	3248	bcgsc.ca	37	4	175414460	175414460	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HPGD	NM_000860	exon6	c.T504C	p.A168A	.	.	90	4	83	0	.	90
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18339305	18339305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HPS5	NM_181507	exon2	c.G101A	p.R34H	.	.	96	22	59	0	.	133
HRNR	388697	ucsc.edu	37	1	152185768	152185768	+	Silent	SNP	T	T	G	rs41266114	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HRNR	NM_001009931	exon3	c.A8337C	p.S2779S	.	.	108	35	64	3	T|0.476;G|0.524	93
HSD17B13	345275	bcgsc.ca	37	4	88231429	88231429	+	Missense_Mutation	SNP	G	G	A	rs62305723	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HSD17B13	NM_178135	exon6	c.C778T	p.P260S	.	.	219	8	139	0	G|0.956;A|0.044	90
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778842	31778842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HSPA1L	NM_005527	exon2	c.G908A	p.R303Q	.	.	113	60	58	0	.	230
HUNK	30811	ucsc.edu;bcgsc.ca	37	21	33340660	33340660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HUNK	NM_014586	exon6	c.A973G	p.T325A	.	.	43	4	57	0	.	334
HUWE1	10075	bcgsc.ca	37	X	53561160	53561160	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HUWE1	NM_031407	exon84	c.12832-2A>G	.	.	.	81	4	41	0	.	280
IGFBP2	3485	ucsc.edu;bcgsc.ca	37	2	217526707	217526707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IGFBP2	NM_000597	exon3	c.T799C	p.Y267H	.	.	28	4	30	0	.	946
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118649063	118649063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IGSF11	NM_001015887	exon2	c.C112A	p.Q38K	.	.	121	7	62	0	.	90
IKBKAP	8518	bcgsc.ca	37	9	111653640	111653640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IKBKAP	NM_003640	exon28	c.G3003A	p.M1001I	.	.	63	4	44	0	.	318
IKBKAP	8518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111658811	111658811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IKBKAP	NM_003640	exon25	c.G2701C	p.D901H	.	.	93	31	82	0	.	318
IL21	59067	ucsc.edu;bcgsc.ca	37	4	123534071	123534071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IL21	NM_001207006	exon4	c.T373C	p.C125R	.	.	44	4	54	0	.	90
IL31RA	133396	bcgsc.ca	37	5	55185805	55185805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IL31RA	NM_001242637	exon6	c.T614C	p.V205A	.	.	91	4	69	0	.	91
INO80D	54891	bcgsc.ca	37	2	206893046	206893046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	INO80D	NM_017759	exon6	c.G1087T	p.D363Y	.	.	97	4	53	0	.	91
INPP4B	8821	bcgsc.ca	37	4	143045897	143045897	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	INPP4B	NM_003866	exon20	c.G1737A	p.Q579Q	.	.	72	4	81	0	.	228
INSL5	10022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	67266850	67266850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	INSL5	NM_005478	exon1	c.G55T	p.E19X	.	.	58	25	64	0	.	90
IP6K2	51447	bcgsc.ca	37	3	48728858	48728858	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IP6K2	NM_016291	exon4	c.T486C	p.T162T	.	.	288	7	139	0	.	265
IPO11	51194	bcgsc.ca	37	5	61826574	61826574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IPO11	NM_001134779	exon22	c.A2171G	p.E724G	.	.	140	6	112	1	.	227
IPO5	3843	bcgsc.ca	37	13	98662184	98662184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IPO5	NM_002271	exon19	c.A1904G	p.K635R	.	.	66	4	54	0	.	228
IRAK4	51135	bcgsc.ca	37	12	44180213	44180213	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IRAK4	NM_016123	exon11	c.A1200G	p.K400K	.	.	96	4	73	0	.	1366
ITGA2B	3674	bcgsc.ca	37	17	42455130	42455130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITGA2B	NM_000419	exon21	c.A2123G	p.K708R	.	.	81	5	36	0	.	228
ITGA9	3680	bcgsc.ca	37	3	37536056	37536056	+	Silent	SNP	C	C	T	rs2507941	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITGA9	NM_002207	exon5	c.C609T	p.T203T	.	.	665	13	174	1	C|0.959;T|0.041	715
ITGBL1	9358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102366888	102366888	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITGBL1	NM_004791	exon10	c.T1380G	p.G460G	.	.	208	50	105	0	.	92
ITLN1	55600	bcgsc.ca	37	1	160851894	160851894	+	Silent	SNP	G	G	A	rs55974765		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITLN1	NM_017625	exon4	c.C258T	p.H86H	.	.	204	8	53	0	.	96
ITPR1	3708	bcgsc.ca	37	3	4669466	4669466	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITPR1	NM_001099952	exon5	c.T183C	p.C61C	.	.	115	6	65	0	.	710
ITPR1	3708	bcgsc.ca	37	3	4744625	4744625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITPR1	NM_001099952	exon36	c.T4621C	p.S1541P	.	.	73	4	62	0	.	710
ITPR1	3708	bcgsc.ca	37	3	4829701	4829701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITPR1	NM_001168272	exon51	c.A6641G	p.K2214R	.	.	230	6	102	0	.	710
ITPRIP	85450	bcgsc.ca	37	10	106075253	106075253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITPRIP	NM_001272013	exon2	c.A557G	p.E186G	.	.	83	5	78	0	.	90
KAL1	3730	bcgsc.ca	37	X	8565208	8565208	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KAL1	NM_000216	exon4	c.T408C	p.A136A	.	.	64	4	47	0	.	134
KCND1	3750	bcgsc.ca	37	X	48825661	48825661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KCND1	NM_004979	exon1	c.T1018C	p.F340L	.	.	77	4	44	0	.	133
KCNH6	81033	bcgsc.ca	37	17	61601535	61601535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KCNH6	NM_030779	exon2	c.A112G	p.N38D	.	.	166	7	67	0	.	91
KCNK13	56659	bcgsc.ca	37	14	90650918	90650918	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KCNK13	NM_022054	exon2	c.C798A	p.L266L	.	.	85	4	94	0	.	91
KCTD3	51133	hgsc.bcm.edu	37	1	215747171	215747171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KCTD3	NM_016121	exon2	c.126delT	p.S42fs	.	.	732	16	158	1	.	93
KDM5B	10765	bcgsc.ca	37	1	202715284	202715284	+	Silent	SNP	G	G	A	rs1141108	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KDM5B	NM_006618	exon15	c.C2184T	p.Y728Y	.	.	113	5	80	0	G|0.346;A|0.654	273
KIAA0141	9812	bcgsc.ca	37	5	141309824	141309824	+	Missense_Mutation	SNP	G	G	A	rs351260	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA0141	NM_001142603	exon7	c.G739A	p.A247T	.	.	160	12	81	0	G|0.606;T|0.043	91
KIAA1024	23251	bcgsc.ca	37	15	79749265	79749265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1024	NM_015206	exon2	c.T776C	p.I259T	.	.	173	6	83	0	.	183
KIAA1161	57462	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	34371283	34371283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1161	.	.	.	.	.	.	54	33	16	0	.	136
KIAA1210	57481	bcgsc.ca	37	X	118230509	118230509	+	Missense_Mutation	SNP	C	C	T	rs145929840		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1210	NM_020721	exon8	c.G1214A	p.R405H	.	.	104	5	48	0	C|0.992;T|0.008	67
KIAA1462	57608	ucsc.edu;bcgsc.ca	37	10	30316258	30316258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1462	NM_020848	exon3	c.G2819A	p.G940D	.	.	38	4	34	0	.	72
KIAA1731	85459	ucsc.edu;bcgsc.ca	37	11	93430323	93430323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1731	NM_033395	exon15	c.A2245G	p.R749G	.	.	42	4	68	0	.	22
KIAA1755	85449	bcgsc.ca	37	20	36845738	36845738	+	Missense_Mutation	SNP	C	C	T	rs760998	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIAA1755	NM_001029864	exon13	c.G2818A	p.E940K	.	.	85	4	46	0	C|0.680;T|0.320	95
KIF24	347240	bcgsc.ca	37	9	34310927	34310927	+	Missense_Mutation	SNP	T	T	C	rs10972048	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF24	NM_194313	exon2	c.A418G	p.M140V	.	.	471	12	175	0	T|0.590;C|0.410	22
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	.	.	97	72	46	0	.	25
KIF2C	11004	bcgsc.ca	37	1	45225965	45225965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF2C	NM_006845	exon15	c.A1381G	p.T461A	.	.	80	4	67	0	.	228
KIF3A	11127	bcgsc.ca	37	5	132052121	132052121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF3A	NM_007054	exon7	c.A770G	p.Q257R	.	.	72	4	58	0	.	91
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47371491	47371491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL18	NM_025010	exon4	c.T452C	p.M151T	.	.	123	19	49	0	.	90
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21334288	21334288	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL9	NM_018847	exon1	c.C571T	p.L191L	.	.	40	9	42	0	.	94
KLK3	354	bcgsc.ca	37	19	51361388	51361388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLK3	NM_001030047	exon3	c.A310G	p.S104G	.	.	78	4	52	0	.	228
KLRD1	3824	bcgsc.ca	37	12	10462052	10462052	+	Missense_Mutation	SNP	T	T	G	rs10772256	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLRD1	NM_002262	exon2	c.T73G	p.S25A	.	.	218	6	118	0	T|0.074;G|0.926	90
KPNA7	402569	bcgsc.ca	37	7	98771377	98771377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KPNA7	NM_001145715	exon10	c.A1505G	p.D502G	.	.	344	8	121	1	.	158
KRT35	3886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39635729	39635729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRT35	NM_002280	exon3	c.A581T	p.Q194L	.	.	184	16	75	0	.	92
KRT6C	286887	ucsc.edu	37	12	52865244	52865244	+	Silent	SNP	G	G	A	rs3194297	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRT6C	NM_173086	exon4	c.C873T	p.L291L	.	.	103	34	82	21	G|0.680;A|0.320	114
KRT72	140807	bcgsc.ca	37	12	52981442	52981442	+	Missense_Mutation	SNP	C	C	A	rs11170183	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRT72	NM_001146225	exon7	c.G1283T	p.R428L	.	.	175	7	66	0	C|0.804;A|0.196	96
KRTAP20-1	337975	bcgsc.ca	37	21	31988796	31988796	+	Missense_Mutation	SNP	A	A	T	rs116971075	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP20-1	NM_181615	exon1	c.A23T	p.Y8F	.	.	517	16	114	0	A|0.962;T|0.038	131
KRTAP5-10	387273	bcgsc.ca	37	11	71276996	71276996	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP5-10	NM_001012710	exon1	c.A363G	p.K121K	.	.	165	37	55	4	.	91
KRTAP5-10	387273	bcgsc.ca	37	11	71277197	71277197	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP5-10	NM_001012710	exon1	c.T564C	p.C188C	.	.	171	19	79	0	.	91
KRTAP5-11	440051	broad.mit.edu;bcgsc.ca	37	11	71293828	71293834	+	Frame_Shift_Del	DEL	GAGCCAC	GAGCCAC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GAGCCAC	GAGCCAC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP5-11	NM_001005405	exon1	c.50_56del	p.17_19del	.	.	237	10	71	0	.	90
KRTAP5-2	440021	bcgsc.ca	37	11	1618971	1618971	+	Silent	SNP	A	A	G	rs201524140	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP5-2	NM_001004325	exon1	c.T510C	p.P170P	.	.	131	14	70	0	A|0.996;G|0.004	44
KRTAP9-2	83899	ucsc.edu	37	17	39382942	39382942	+	Silent	SNP	C	C	A	rs79961737		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP9-2	NM_031961	exon1	c.C36A	p.T12T	.	.	155	53	42	15	C|0.125;A|0.875	23
KRTAP9-4	85280	ucsc.edu	37	17	39406104	39406104	+	Silent	SNP	T	T	G	rs11655843	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRTAP9-4	NM_033191	exon1	c.T132G	p.V44V	.	.	57	21	25	2	T|0.453;G|0.547	44
L3MBTL3	84456	bcgsc.ca	37	6	130363905	130363905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	L3MBTL3	NM_001007102	exon3	c.T61C	p.W21R	.	.	93	4	60	0	.	96
L3MBTL4	91133	bcgsc.ca	37	18	5956238	5956238	+	Missense_Mutation	SNP	C	C	T	rs3737353	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	L3MBTL4	NM_173464	exon20	c.G1853A	p.G618D	.	.	84	5	77	0	C|0.628;T|0.372	93
LALBA	3906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48963012	48963012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LALBA	NM_002289	exon2	c.A145G	p.M49V	.	.	109	18	66	0	.	90
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183111719	183111719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LAMC1	NM_002293	exon28	c.C4624G	p.L1542V	.	.	51	8	20	0	.	252
LARP1	23367	bcgsc.ca	37	5	154174794	154174794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LARP1	NM_015315	exon8	c.A1061G	p.D354G	.	.	69	4	75	0	.	94
LARS	51520	bcgsc.ca	37	5	145543972	145543972	+	Silent	SNP	G	G	A	rs3763373	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LARS	NM_020117	exon6	c.C495T	p.G165G	.	.	193	6	119	0	G|0.801;A|0.199	90
LCT	3938	bcgsc.ca	37	2	136561557	136561557	+	Silent	SNP	G	G	A	rs2304371	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LCT	NM_002299	exon11	c.C4606T	p.L1536L	.	.	85	6	61	0	G|0.327;A|0.673	101
LEPREL1	55214	bcgsc.ca	37	3	189681842	189681842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LEPREL1	NM_018192	exon14	c.G1939A	p.G647R	.	.	51	4	53	0	.	155
LGALS8	3964	bcgsc.ca	37	1	236706862	236706862	+	Missense_Mutation	SNP	G	G	C	rs2243525	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LGALS8	NM_006499	exon10	c.G678C	p.R226S	.	.	100	6	64	1	G|0.270;C|0.729	91
LGI1	9211	bcgsc.ca	37	10	95517926	95517926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LGI1	NM_005097	exon1	c.A25G	p.M9V	.	.	85	5	60	0	.	517
LGR6	59352	bcgsc.ca	37	1	202287156	202287156	+	Silent	SNP	C	C	T	rs12123010	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LGR6	NM_001017403	exon18	c.C1725T	p.S575S	.	.	143	5	68	0	C|0.899;T|0.101	160
LGSN	51557	bcgsc.ca	37	6	63990643	63990643	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LGSN	NM_016571	exon4	c.G813T	p.L271L	.	.	84	4	51	0	.	227
LHCGR	3973	bcgsc.ca	37	2	48921375	48921375	+	Missense_Mutation	SNP	T	T	C	rs2293275	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LHCGR	NM_000233	exon10	c.A935G	p.N312S	.	.	363	9	122	0	T|0.446;C|0.554	589
LILRB2	10288	bcgsc.ca	37	19	54782395	54782395	+	Missense_Mutation	SNP	A	A	G	rs7246737	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LILRB2	NM_005874	exon7	c.T977C	p.F326S	.	.	105	37	55	4	A|0.971;G|0.029	91
LINC00583	100113404	bcgsc.ca	37	9	13945412	13945412	+	RNA	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	74	4	83	0	.	.
LOC100133091	0	bcgsc.ca	37	7	76255416	76255416	+	RNA	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	252	7	74	0	.	.
LOC100507053	0	bcgsc.ca	37	4	100205829	100205829	+	RNA	SNP	T	T	G	rs28364311	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	129	5	105	0	T|0.769;G|0.231	.
LOC440040	0	bcgsc.ca	37	11	49597783	49597783	+	RNA	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	34	4	32	0	.	.
LOC643387	0	broad.mit.edu	37	2	239142179	239142179	+	RNA	SNP	G	G	A	rs11696058	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	187	8	126	0	G|0.806;A|0.194	.
LOC643733	0	broad.mit.edu	37	11	104774183	104774183	+	RNA	SNP	A	A	G	rs15684	byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	75	5	72	0	A|0.290;G|0.710	.
LOXL3	84695	bcgsc.ca	37	2	74761307	74761307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LOXL3	NM_032603	exon12	c.T1996C	p.C666R	.	.	91	4	72	0	.	226
LOXL4	84171	bcgsc.ca	37	10	100013438	100013438	+	Silent	SNP	C	C	T	rs17524355	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LOXL4	NM_032211	exon11	c.G1707A	p.A569A	.	.	58	4	40	0	C|0.826;T|0.174	230
LPAR1	1902	bcgsc.ca	37	9	113637854	113637854	+	Silent	SNP	G	G	A	rs3739709	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LPAR1	NM_001401	exon4	c.C942T	p.R314R	.	.	96	5	97	0	G|0.863;A|0.137	24
LPIN2	9663	bcgsc.ca	37	18	2960679	2960679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LPIN2	NM_014646	exon2	c.A160G	p.K54E	.	.	40	4	47	0	.	227
LRIG3	121227	bcgsc.ca	37	12	59272705	59272705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRIG3	NM_153377	exon14	c.T1984C	p.F662L	.	.	160	6	81	0	.	229
LRP1B	53353	bcgsc.ca	37	2	142567910	142567910	+	Missense_Mutation	SNP	T	T	C	rs12990449	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRP1B	NM_018557	exon2	c.A143G	p.Q48R	.	.	219	9	107	0	C|0.208;N|0.000	311
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141264466	141264466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRP1B	NM_018557	exon53	c.A8420C	p.E2807A	.	.	185	79	99	0	.	311
LRRC17	10234	bcgsc.ca	37	7	102574715	102574715	+	Missense_Mutation	SNP	A	A	G	rs3800939	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRC17	NM_005824	exon2	c.A355G	p.K119E	.	.	138	5	69	0	A|0.942;G|0.058	91
LRRC37BP1	147172	broad.mit.edu	37	17	28964474	28964474	+	RNA	SNP	A	A	G	rs35881489	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	30	14	19	0	A|0.500;G|0.500	.
LRRC41	10489	bcgsc.ca	37	1	46744894	46744894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRC41	NM_006369	exon9	c.T2179C	p.S727P	.	.	125	5	89	0	.	156
LRRC55	219527	bcgsc.ca	37	11	56954821	56954821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRC55	NM_001005210	exon2	c.T893C	p.L298P	.	.	184	6	91	0	.	90
LRRC70	100130733	bcgsc.ca	37	5	61876695	61876695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_181506	exon2	c.A1430G	p.E477G	.	.	62	4	47	0	.	.
LRRIQ1	84125	broad.mit.edu;mdanderson.org	37	12	85449370	85449370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRIQ1	NM_001079910	exon8	c.A799G	p.R267G	.	.	80	7	60	0	.	95
LRRN3	54674	bcgsc.ca	37	7	110764743	110764743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRRN3	NM_018334	exon2	c.A1915G	p.I639V	.	.	50	4	28	0	.	154
LRRTM2	26045	bcgsc.ca	37	5	138210049	138210049	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_015564	exon2	c.C201A	p.S67S	.	.	140	5	75	0	.	.
LSM14B	149986	bcgsc.ca	37	20	60705603	60705603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LSM14B	NM_144703	exon6	c.A691G	p.N231D	.	.	75	4	49	0	.	22
LSR	51599	ucsc.edu;bcgsc.ca	37	19	35757427	35757427	+	Missense_Mutation	SNP	G	G	A	rs34259399	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LSR	NM_205834	exon6	c.G1088A	p.S363N	.	.	55	5	39	0	G|0.881;A|0.119	90
LY6H	4062	bcgsc.ca	37	8	144240257	144240257	+	Silent	SNP	C	C	G	rs9694368	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LY6H	NM_001135655	exon3	c.G213C	p.T71T	.	.	165	11	59	0	C|0.620;G|0.380	90
MAATS1	89876	hgsc.bcm.edu	37	3	119421979	119421980	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_033364	exon1	c.34_35insC	p.A12fs	.	.	93	9	34	0	.	.
MACF1	23499	bcgsc.ca	37	1	39748921	39748921	+	Silent	SNP	G	G	A	rs2275188	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MACF1	NM_012090	exon9	c.G771A	p.Q257Q	.	.	99	7	69	0	G|0.422;A|0.578	165
MACF1	23499	bcgsc.ca	37	1	39926335	39926335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MACF1	NM_012090	exon89	c.T15215C	p.V5072A	.	.	111	5	93	0	.	165
MACROD2	140733	bcgsc.ca	37	20	13982963	13982963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MACROD2	NM_080676	exon2	c.A76G	p.R26G	.	.	88	4	53	0	.	22
MAG	4099	bcgsc.ca	37	19	35786599	35786599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAG	NM_080600	exon4	c.T130C	p.F44L	.	.	73	4	48	0	.	947
MAGEC1	9947	bcgsc.ca	37	X	140993885	140993885	+	Missense_Mutation	SNP	C	C	T	rs74847167	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAGEC1	NM_005462	exon4	c.C695T	p.P232L	.	.	536	21	166	4	C|0.989;T|0.011	133
MAGI1	9223	bcgsc.ca	37	3	65438960	65438960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAGI1	NM_001033057	exon6	c.A1015G	p.K339E	.	.	63	4	47	0	.	661
MANBA	4126	bcgsc.ca	37	4	103571815	103571815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MANBA	NM_005908	exon13	c.T1748C	p.L583P	.	.	82	4	68	0	.	91
MANBA	4126	bcgsc.ca	37	4	103611845	103611845	+	Missense_Mutation	SNP	C	C	T	rs227368	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MANBA	NM_005908	exon6	c.G757A	p.V253I	.	.	85	5	75	0	T|0.295;G|0.127;C|0.491;A|0.086	91
MAP10	54627	bcgsc.ca	37	1	232941153	232941153	+	Silent	SNP	C	C	T	rs12409898	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_019090	exon1	c.C384T	p.F128F	.	.	102	5	49	0	C|0.474;T|0.526	.
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17831786	17831786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP1S	NM_018174	exon2	c.G160C	p.D54H	.	.	104	23	65	0	.	90
MAP3K5	4217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	136913604	136913604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP3K5	NM_005923	exon22	c.T3027C	p.D1009D	.	.	99	16	66	0	.	982
MAP7D2	256714	bcgsc.ca	37	X	20071046	20071046	+	Missense_Mutation	SNP	T	T	C	rs34519770	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP7D2	NM_152780	exon5	c.A545G	p.N182S	.	.	83	6	85	0	T|0.544;C|0.456	195
MAP9	79884	bcgsc.ca	37	4	156274377	156274377	+	Missense_Mutation	SNP	T	T	C	rs1058992	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP9	NM_001039580	exon11	c.A1496G	p.K499R	.	.	510	23	186	0	T|0.652;C|0.348	91
MAP9	79884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156289738	156289738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP9	NM_001039580	exon5	c.G708T	p.E236D	.	.	88	29	110	0	.	91
MAPK7	5598	ucsc.edu	37	17	19282237	19282237	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAPK7	NM_002749	exon2	c.A24G	p.E8E	.	.	33	4	18	0	.	1402
MAS1L	116511	bcgsc.ca	37	6	29455304	29455304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAS1L	NM_052967	exon1	c.T376C	p.S126P	.	.	70	4	45	1	.	527
MAU2	23383	bcgsc.ca	37	19	19446936	19446936	+	Silent	SNP	G	G	A	rs769267	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAU2	NM_015329	exon3	c.G300A	p.P100P	.	.	98	5	54	0	G|0.435;A|0.565	91
MBD1	4152	bcgsc.ca	37	18	47803081	47803081	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MBD1	NM_001204137	exon5	c.G426A	p.G142G	.	.	69	4	59	0	.	228
MED13	9969	bcgsc.ca	37	17	60112919	60112919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MED13	NM_005121	exon4	c.T521C	p.V174A	.	.	209	6	93	0	.	136
MEIS3P1	4213	bcgsc.ca	37	17	15690888	15690888	+	RNA	SNP	C	C	G	rs4791638	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	63	4	43	0	C|0.797;G|0.203	.
MEPE	56955	bcgsc.ca	37	4	88767517	88767517	+	Silent	SNP	C	C	T	rs201756883		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MEPE	NM_020203	exon4	c.C1497T	p.N499N	.	.	50	4	61	0	A|0.000;C|0.999;T|0.000	93
MFN2	9927	bcgsc.ca	37	1	12062048	12062048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MFN2	NM_014874	exon11	c.T1048C	p.S350P	.	.	200	6	108	0	.	91
MICA	100507436	bcgsc.ca	37	6	31379817	31379817	+	Missense_Mutation	SNP	T	T	C	rs61736348	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001177519	exon4	c.T707C	p.I236T	.	.	61	27	36	5	T|0.565;C|0.435	.
MIR211	406993	ucsc.edu	37	15	31357261	31357261	+	RNA	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	37	4	34	0	.	.
MIR365B	100126356	bcgsc.ca	37	17	29902439	29902439	+	RNA	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	116	5	54	0	.	.
MKI67	4288	bcgsc.ca	37	10	129904477	129904477	+	Missense_Mutation	SNP	C	C	T	rs11591817	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MKI67	NM_002417	exon13	c.G5627A	p.R1876Q	.	.	506	11	193	0	C|0.799;T|0.201	519
MKI67	4288	bcgsc.ca	37	10	129904560	129904560	+	Silent	SNP	C	C	T	rs2853346	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MKI67	NM_002417	exon13	c.G5544A	p.T1848T	.	.	344	8	190	0	T|0.166;G|0.285;C|0.432;A|0.117	519
MKI67	4288	bcgsc.ca	37	10	129913960	129913960	+	Missense_Mutation	SNP	A	A	T	rs7095325	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MKI67	NM_002417	exon7	c.T712A	p.W238R	.	.	17	3	33	0	A|0.739;T|0.261	519
MKX	283078	bcgsc.ca	37	10	28023688	28023688	+	Missense_Mutation	SNP	C	C	T	rs148956781	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MKX	NM_001242702	exon5	c.G535A	p.E179K	.	.	156	6	99	0	C|0.991;T|0.009	91
MLL3	58508	ucsc.edu	37	7	151935853	151935853	+	Missense_Mutation	SNP	T	T	C	rs77064988	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MLL3	NM_170606	exon15	c.A2591G	p.E864G	.	.	151	31	84	0	T|0.300;C|0.700	1398
MMP2	4313	bcgsc.ca	37	16	55519535	55519535	+	Silent	SNP	G	G	C	rs1132896	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MMP2	NM_004530	exon5	c.G678C	p.G226G	.	.	83	4	68	0	G|0.738;C|0.262	1149
MOCS1	4337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39895091	39895091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS1	NM_005943	exon1	c.T227C	p.L76P	.	.	101	17	33	0	.	92
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	52405551	52405551	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS2	NM_176806	exon1	c.G9A	p.P3P	.	.	49	19	31	0	.	90
MOGAT2	80168	bcgsc.ca	37	11	75428958	75428958	+	Missense_Mutation	SNP	A	A	G	rs554202	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOGAT2	NM_025098	exon1	c.A25G	p.M9V	.	.	127	6	81	0	A|0.591;G|0.409	228
MPP3	4356	bcgsc.ca	37	17	41879106	41879106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MPP3	NM_001932	exon20	c.A1721G	p.K574R	.	.	81	4	40	0	.	91
MPRIP	23164	bcgsc.ca	37	17	17083389	17083389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MPRIP	NM_015134	exon22	c.A3032G	p.N1011S	.	.	87	4	54	0	.	90
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60757607	60757607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MRC2	NM_006039	exon15	c.C2375T	p.S792F	.	.	131	30	46	0	.	117
MROH7	374977	bcgsc.ca	37	1	55119534	55119534	+	Missense_Mutation	SNP	C	C	T	rs17399810	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001039464	exon3	c.C935T	p.S312F	.	.	146	6	82	0	C|0.855;T|0.145	.
MST1L	11223	broad.mit.edu	37	1	17083807	17083807	+	Missense_Mutation	SNP	T	T	C	rs9286084		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001271733	exon15	c.A1990G	p.T664A	.	.	197	41	87	0	.	.
MST1L	11223	ucsc.edu	37	1	17085564	17085564	+	Missense_Mutation	SNP	A	A	G	rs80308386	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001271733	exon9	c.T1157C	p.L386P	.	.	70	24	29	5	A|0.625;G|0.375	.
MST1P2	11209	ucsc.edu	37	1	16975429	16975429	+	RNA	SNP	T	T	C	rs60947741	bycluster;byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	102	29	30	3	T|0.700;C|0.300	.
MST1P2	11209	ucsc.edu	37	1	16975994	16975994	+	RNA	SNP	T	T	C	rs61772255	bycluster;byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	60	14	46	18	T|0.250;C|0.750	.
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49936589	49936589	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MST1R	NM_001244937	exon2	c.A1338G	p.V446V	.	.	109	12	63	0	.	1406
MT1M	4499	bcgsc.ca	37	16	56667282	56667282	+	Missense_Mutation	SNP	C	C	A	rs1827210	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MT1M	NM_176870	exon2	c.C59A	p.T20K	.	.	205	9	99	0	C|0.207;A|0.793	91
MTA1	9112	bcgsc.ca	37	14	105930406	105930406	+	Missense_Mutation	SNP	G	G	A	rs4983413	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MTA1	NM_004689	exon13	c.G1114A	p.V372I	.	.	81	4	55	0	G|0.782;A|0.218	135
MTHFR	4524	bcgsc.ca	37	1	11854468	11854468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MTHFR	NM_005957	exon8	c.T1294C	p.F432L	.	.	81	4	58	0	.	90
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11169374	11169374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MTOR	NM_004958	exon56	c.A7501T	p.I2501F	.	.	119	9	92	0	.	1439
MUC16	94025	bcgsc.ca	37	19	9070402	9070402	+	Missense_Mutation	SNP	G	G	T	rs12150888	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC16	NM_024690	exon3	c.C17044A	p.P5682T	.	.	247	9	145	0	G|0.815;T|0.185	566
MUC16	94025	bcgsc.ca	37	19	9074950	9074950	+	Missense_Mutation	SNP	G	G	T	rs2591591	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC16	NM_024690	exon3	c.C12496A	p.H4166N	.	.	103	6	96	0	G|0.759;T|0.241	566
MUC16	94025	bcgsc.ca	37	19	9075584	9075584	+	Silent	SNP	T	T	A	rs2547069	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC16	NM_024690	exon3	c.A11862T	p.T3954T	.	.	311	8	160	0	T|0.771;A|0.229	566
MUC16	94025	bcgsc.ca	37	19	9075635	9075635	+	Silent	SNP	G	G	A	rs2547070	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC16	NM_024690	exon3	c.C11811T	p.S3937S	.	.	191	8	137	0	G|0.788;A|0.212	566
MUC20	200958	ucsc.edu	37	3	195453243	195453243	+	Missense_Mutation	SNP	C	C	T	rs3828408	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_152673	exon3	c.C1256T	p.P419L	.	.	83	15	72	6	C|0.678;T|0.322	.
MUC20	200958	ucsc.edu	37	3	195453249	195453249	+	Missense_Mutation	SNP	T	T	C	rs3828407	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_152673	exon3	c.T1262C	p.M421T	.	.	86	12	68	6	T|0.982;C|0.018	.
MUC21	394263	bcgsc.ca	37	6	30954489	30954489	+	Silent	SNP	A	A	T	rs143989844	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC21	NM_001010909	exon2	c.A537T	p.T179T	.	.	194	26	50	1	A|0.995;T|0.005	92
MUC21	394263	bcgsc.ca	37	6	30954648	30954648	+	Silent	SNP	G	G	A	rs147486343	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC21	NM_001010909	exon2	c.G696A	p.T232T	.	.	180	29	48	1	G|0.993;A|0.007	92
MUC21	394263	bcgsc.ca	37	6	30955066	30955066	+	Missense_Mutation	SNP	A	A	G	rs41288695	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC21	NM_001010909	exon2	c.A1114G	p.T372A	.	.	86	28	31	0	A|0.966;G|0.034	92
MUC21	394263	hgsc.bcm.edu	37	6	30954774	30954774	+	Missense_Mutation	SNP	G	G	C	rs41288649	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC21	NM_001010909	exon2	c.G822C	p.E274D	.	.	234	26	72	0	G|0.500;C|0.500	92
MUC2	4583	hgsc.bcm.edu;bcgsc.ca	37	11	1093368	1093368	+	Silent	SNP	G	G	A	rs111440994		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC2	NM_002457	exon30	c.G5187A	p.T1729T	.	.	130	10	68	0	.	90
MUC4	4585	bcgsc.ca	37	3	195505835	195505835	+	Missense_Mutation	SNP	C	C	T	rs58500707		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC4	NM_018406	exon2	c.G12616A	p.A4206T	.	.	125	18	83	1	.	90
MUC4	4585	bcgsc.ca	37	3	195506258	195506258	+	Missense_Mutation	SNP	G	G	T	rs11929196	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC4	NM_018406	exon2	c.C12193A	p.L4065I	.	.	143	6	120	0	G|0.962;T|0.038	90
MUC4	4585	bcgsc.ca	37	3	195510649	195510649	+	Missense_Mutation	SNP	G	G	A	rs201848367		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC4	NM_018406	exon2	c.C7802T	p.A2601V	.	.	42	18	26	0	.	90
MUC4	4585	bcgsc.ca	37	3	195510655	195510655	+	Missense_Mutation	SNP	T	T	G	rs76458870	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC4	NM_018406	exon2	c.A7796C	p.Y2599S	.	.	48	23	27	1	T|0.500;G|0.500	90
MUC4	4585	bcgsc.ca	37	3	195515194	195515194	+	Missense_Mutation	SNP	G	G	C	rs201370057	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC4	NM_018406	exon2	c.C3257G	p.T1086S	.	.	66	7	63	3	G|0.939;C|0.061	90
MUC5B	727897	bcgsc.ca	37	11	1265987	1265987	+	Missense_Mutation	SNP	C	C	G	rs3021158	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_002458	exon31	c.C7877G	p.T2626R	.	.	155	6	63	0	C|0.873;G|0.127	.
MUC6	4588	bcgsc.ca	37	11	1017522	1017522	+	Missense_Mutation	SNP	T	T	G	rs199592093		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC6	NM_005961	exon31	c.A5279C	p.E1760A	.	.	914	33	180	3	.	23
MUC6	4588	hgsc.bcm.edu	37	11	1016849	1016849	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC6	NM_005961	exon31	c.G5952C	p.M1984I	.	.	1453	59	189	0	.	23
MUC6	4588	hgsc.bcm.edu	37	11	1017945	1017945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC6	NM_005961	exon31	c.T4856C	p.F1619S	.	.	771	31	174	0	.	23
MUM1L1	139221	bcgsc.ca	37	X	105450048	105450048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUM1L1	NM_152423	exon5	c.A623G	p.N208S	.	.	75	4	40	0	.	133
MYCBP2	23077	bcgsc.ca	37	13	77738664	77738664	+	Silent	SNP	A	A	G	rs2274547	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYCBP2	NM_015057	exon43	c.T6472C	p.L2158L	.	.	136	5	84	0	A|0.832;G|0.168	236
MYCBPAP	84073	bcgsc.ca	37	17	48603503	48603503	+	Missense_Mutation	SNP	C	C	T	rs9890721	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYCBPAP	NM_032133	exon14	c.C2173T	p.R725W	.	.	91	5	30	0	C|0.507;N|0.000	230
MYH1	4619	bcgsc.ca	37	17	10416973	10416973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYH1	NM_005963	exon9	c.G775A	p.G259R	.	.	125	5	116	0	.	171
MYH2	4620	bcgsc.ca	37	17	10450816	10450816	+	Silent	SNP	T	T	C	rs12600539	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYH2	NM_017534	exon4	c.A324G	p.E108E	.	.	157	10	124	0	T|0.540;C|0.460	194
MYH7	4625	bcgsc.ca	37	14	23884370	23884370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYH7	NM_000257	exon37	c.A5393G	p.D1798G	.	.	210	8	94	0	.	94
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	18058480	18058480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO15A	NM_016239	exon45	c.G8281A	p.V2761M	.	.	48	25	19	0	.	97
MYO15A	51168	ucsc.edu;bcgsc.ca	37	17	18045411	18045411	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO15A	NM_016239	exon23	c.C5668G	p.L1890V	.	.	44	4	27	0	.	97
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59464100	59464100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO1E	NM_004998	exon22	c.C2476T	p.L826F	.	.	87	19	49	0	.	514
MYO3A	53904	bcgsc.ca	37	10	26446312	26446312	+	Missense_Mutation	SNP	G	G	A	rs3758449	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	MYO3A,NS,carcinoma,-1	MYO3A	NM_017433	exon26	c.G2867A	p.S956N	.	.	187	7	125	0	G|0.512;N|0.000	1007
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17264818	17264818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO9B	NM_001130065	exon5	c.A1040G	p.E347G	.	.	46	4	51	0	.	67
MYOM3	127294	bcgsc.ca	37	1	24390636	24390636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYOM3	NM_152372	exon30	c.A3548G	p.D1183G	.	.	49	4	34	0	.	93
N4BP2L2	10443	bcgsc.ca	37	13	33110238	33110238	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	N4BP2L2	NM_014887	exon2	c.T927C	p.D309D	.	.	98	4	83	0	.	68
NAE1	8883	bcgsc.ca	37	16	66847556	66847556	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NAE1	NM_003905	exon13	c.G945A	p.V315V	.	.	83	4	103	0	.	69
NAT10	55226	bcgsc.ca	37	11	34149034	34149034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NAT10	NM_024662	exon12	c.A1132G	p.K378E	.	.	99	5	67	0	.	92
NBPF1	55672	bcgsc.ca	37	1	16907453	16907453	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_017940	exon17	c.1380-2A>G	.	.	.	1198	72	177	6	.	.
NBPF9	400818	bcgsc.ca	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	C	G	rs3183413		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	542	45	174	2	.	.
NBPF9	400818	bcgsc.ca	37	1	144828688	144828688	+	Silent	SNP	C	C	T	rs3183414		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	545	47	172	0	.	.
NBPF9	400818	bcgsc.ca	37	1	144828707	144828707	+	Missense_Mutation	SNP	G	G	T	rs1065068	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	539	36	167	5	.	.
NBPF9	400818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	101	32	82	0	G|0.500;A|0.500	.
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71039123	71039123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCOA2	NM_006540	exon19	c.G3841A	p.G1281S	.	.	149	23	71	0	.	639
NCOA3	8202	bcgsc.ca	37	20	46265099	46265099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCOA3	NM_001174088	exon12	c.T1999C	p.S667P	.	.	106	5	55	0	.	229
NCOR1	9611	bcgsc.ca	37	17	15952252	15952252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCOR1	NM_006311	exon41	c.A6443G	p.E2148G	.	.	63	6	37	0	.	229
NCOR1P1	149934	ucsc.edu	37	20	26084296	26084296	+	RNA	SNP	A	A	G	rs71256849		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	214	45	109	26	A|0.500;G|0.500	.
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3480	3480	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361390	exon1	c.A174G	p.K58K	.	.	147	8	36	0	.	.
ND4	0	bcgsc.ca	37	MT	11299	11299	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361381	exon1	c.T540C	p.T180T	.	.	238	10	35	0	.	.
ND4L	0	bcgsc.ca	37	MT	10550	10550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361335	exon1	c.A81G	p.I27M	.	.	198	10	30	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12372	12372	+	Silent	SNP	G	G	A	rs28452651	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361567	exon1	c.G36A	p.L12L	.	.	167	13	38	0	.	.
ND6	0	bcgsc.ca	37	MT	14167	14167	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361681	exon1	c.G507A	p.E169E	.	.	236	6	45	0	.	.
NDNF	79625	bcgsc.ca	37	4	121958091	121958091	+	Silent	SNP	T	T	G	rs3733558	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NDNF	NM_024574	exon4	c.A1035C	p.L345L	.	.	73	4	88	0	T|0.535;G|0.465	90
NDST3	9348	bcgsc.ca	37	4	118975673	118975673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NDST3	NM_004784	exon2	c.G608A	p.R203H	.	.	75	5	81	0	.	153
NDUFA8	4702	ucsc.edu;bcgsc.ca	37	9	124914613	124914613	+	Silent	SNP	C	C	T	rs4679	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NDUFA8	NM_014222	exon2	c.G126A	p.E42E	.	.	66	6	55	0	C|0.603;T|0.397	153
NDUFV2	4729	bcgsc.ca	37	18	9117867	9117867	+	Missense_Mutation	SNP	T	T	C	rs906807	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NDUFV2	NM_021074	exon2	c.T86C	p.V29A	.	.	161	7	112	0	T|0.210;C|0.790	91
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152552146	152552146	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NEB	NM_004543	exon18	c.C1620G	p.P540P	.	.	167	16	111	0	.	145
NECAB1	64168	bcgsc.ca	37	8	91937833	91937833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NECAB1	NM_022351	exon7	c.A565G	p.R189G	.	.	82	4	38	0	.	23
NEIL3	55247	bcgsc.ca	37	4	178231152	178231152	+	Silent	SNP	C	C	A	rs10013040	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NEIL3	NM_018248	exon1	c.C45A	p.R15R	.	.	90	7	64	1	C|0.815;A|0.184	660
NET1	10276	ucsc.edu;bcgsc.ca	37	10	5496968	5496968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NET1	NM_001047160	exon10	c.T1084C	p.C362R	.	.	43	4	56	0	.	290
NFAT5	10725	bcgsc.ca	37	16	69728015	69728015	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NFAT5	NM_138713	exon13	c.C4287T	p.A1429A	.	.	102	5	94	0	.	90
NFXL1	152518	bcgsc.ca	37	4	47887536	47887536	+	Silent	SNP	T	T	C	rs2053404	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NFXL1	NM_152995	exon14	c.A1803G	p.A601A	.	.	248	7	108	0	T|0.278;C|0.722	524
NID2	22795	ucsc.edu;bcgsc.ca	37	14	52496387	52496387	+	Missense_Mutation	SNP	C	C	A	rs2273430	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NID2	NM_007361	exon10	c.G2279T	p.G760V	.	.	41	5	51	0	C|0.076;A|0.924	158
NLN	57486	bcgsc.ca	37	5	65073346	65073346	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLN	NM_020726	exon4	c.T543C	p.P181P	.	.	60	4	55	0	.	90
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32466120	32466120	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRC4	NM_001199138	exon5	c.G2332C	p.E778Q	.	.	130	14	54	0	.	276
NLRP10	338322	bcgsc.ca	37	11	7982189	7982189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRP10	NM_176821	exon2	c.T970C	p.F324L	.	.	83	4	69	0	.	209
NLRP11	204801	bcgsc.ca	37	19	56320692	56320692	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRP11	NM_145007	exon5	c.T1284C	p.S428S	.	.	53	4	41	0	.	169
NLRP1	22861	bcgsc.ca	37	17	5462973	5462973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRP1	NM_033007	exon4	c.A1043G	p.K348R	.	.	86	4	61	1	.	274
NLRP14	338323	bcgsc.ca	37	11	7079038	7079038	+	Missense_Mutation	SNP	G	G	A	rs10839708	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRP14	NM_176822	exon7	c.G2422A	p.E808K	.	.	779	17	185	0	G|0.472;A|0.528	295
NOB1	28987	bcgsc.ca	37	16	69782855	69782855	+	Missense_Mutation	SNP	C	C	T	rs3811348	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NOB1	NM_014062	exon6	c.G692A	p.R231Q	.	.	82	5	65	0	C|0.585;T|0.415	90
NOX1	27035	bcgsc.ca	37	X	100117669	100117669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NOX1	NM_013955	exon5	c.T478C	p.S160P	.	.	55	4	47	1	.	131
NPR3	4883	bcgsc.ca	37	5	32710834	32710834	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NPR3	NM_001204376	exon1	c.T66C	p.G22G	.	.	71	4	38	0	.	91
NPSR1	387129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34698055	34698055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	NPSR1,NS,malignant_melanoma,0	NPSR1	NM_207172	exon1	c.G31A	p.D11N	.	.	106	38	60	0	.	94
NQO1	1728	hgsc.bcm.edu	37	16	69748929	69748932	+	Frame_Shift_Del	DEL	GCTC	GCTC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GCTC	GCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NQO1	NM_000903	exon4	c.352_355del	p.118_119del	.	.	26	0	31	0	.	90
NR2C2	7182	bcgsc.ca	37	3	15070145	15070145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NR2C2	NM_003298	exon9	c.T908C	p.L303P	.	.	65	4	41	0	.	226
NUFIP1	26747	bcgsc.ca	37	13	45540018	45540018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NUFIP1	NM_012345	exon6	c.A788G	p.K263R	.	.	170	6	86	0	.	90
NUP88	4927	bcgsc.ca	37	17	5289580	5289580	+	Silent	SNP	A	A	G	rs11209	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NUP88	NM_002532	exon17	c.T2172C	p.H724H	.	.	175	6	134	0	A|0.526;G|0.474	204
NXPE1	120400	bcgsc.ca	37	11	114400912	114400912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_152315	exon3	c.A392G	p.N131S	.	.	73	4	80	0	.	.
OBSCN	84033	bcgsc.ca	37	1	228480282	228480282	+	Silent	SNP	A	A	G	rs1150908	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OBSCN	NM_001271223	exon45	c.A11949G	p.T3983T	.	.	245	8	98	0	A|0.277;G|0.723	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228511096	228511096	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OBSCN	NM_001271223	exon67	c.C18312T	p.C6104C	.	.	141	27	54	0	.	403
OGFOD1	55239	bcgsc.ca	37	16	56500132	56500132	+	Missense_Mutation	SNP	C	C	T	rs34883368	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OGFOD1	NM_018233	exon5	c.C517T	p.P173S	.	.	80	5	47	0	C|0.958;T|0.042	69
OGFOD1	55239	bcgsc.ca	37	16	56500176	56500176	+	Silent	SNP	T	T	A	rs11544885	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OGFOD1	NM_018233	exon5	c.T561A	p.I187I	.	.	50	4	48	0	T|0.961;A|0.039	69
OPHN1	4983	bcgsc.ca	37	X	67454418	67454418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPHN1	NM_002547	exon6	c.A397G	p.K133E	.	.	49	4	39	0	.	110
OPLAH	26873	bcgsc.ca	37	8	145107718	145107718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPLAH	NM_017570	exon22	c.T3104C	p.L1035P	.	.	127	5	38	0	.	68
OPN5	221391	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	47763244	47763244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPN5	NM_181744	exon4	c.C701A	p.A234D	.	.	220	18	97	1	.	69
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62729669	62729676	+	Frame_Shift_Del	DEL	CTGGGGCC	CTGGGGCC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGGGGCC	CTGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPRL1	NM_000913	exon4	c.630_637del	p.210_213del	.	.	257	19	117	0	.	69
OR11H6	122748	bcgsc.ca	37	14	20692453	20692453	+	Missense_Mutation	SNP	G	G	T	rs17211285	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR11H6	NM_001004480	exon1	c.G585T	p.L195F	.	.	165	7	110	0	G|0.540;N|0.001	71
OR1S1	219959	ucsc.edu	37	11	57982763	57982763	+	Missense_Mutation	SNP	A	A	G	rs61763008	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR1S1	NM_001004458	exon1	c.A547G	p.N183D	.	.	166	31	80	3	A|0.671;G|0.329	113
OR2A12	346525	bcgsc.ca	37	7	143792991	143792991	+	Missense_Mutation	SNP	G	G	A	rs34947817	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	OR2A12,NS,carcinoma,+1	OR2A12	NM_001004135	exon1	c.G791A	p.S264N	.	.	139	7	89	0	G|0.844;A|0.156	92
OR2D3	120775	bcgsc.ca	37	11	6942695	6942695	+	Missense_Mutation	SNP	C	C	T	rs12806437	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2D3	NM_001004684	exon1	c.C463T	p.R155W	.	.	306	8	128	1	C|0.859;T|0.141	68
OR2F2	135948	bcgsc.ca	37	7	143633157	143633157	+	Missense_Mutation	SNP	T	T	C	rs13235235	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2F2	NM_001004685	exon1	c.T832C	p.Y278H	.	.	134	8	109	0	T|0.805;C|0.195	94
OR2H2	7932	bcgsc.ca	37	6	29555809	29555809	+	Missense_Mutation	SNP	C	C	T	rs3129034	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2H2	NM_007160	exon1	c.C88T	p.L30F	.	.	260	7	126	0	T|0.745;C|0.255	22
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248112614	248112614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2L8	NM_001001963	exon1	c.C455A	p.S152X	.	.	529	117	156	0	.	70
OR2M3	127062	bcgsc.ca	37	1	248366702	248366702	+	Silent	SNP	G	G	A	rs4916112	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2M3	NM_001004689	exon1	c.G333A	p.E111E	.	.	202	7	128	0	G|0.470;A|0.530	70
OR2T27	403239	ucsc.edu	37	1	248813827	248813827	+	Missense_Mutation	SNP	T	T	C	rs61834488	bycluster;byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2T27	NM_001001824	exon1	c.A359G	p.Y120C	.	.	227	86	101	36	T|0.333;C|0.667	47
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248436686	248436686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2T33	NM_001004695	exon1	c.T431C	p.M144T	.	.	647	176	175	0	.	114
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55111334	55111334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR4A16	NM_001005274	exon1	c.C658A	p.L220I	.	.	342	76	138	0	.	69
OR4C3	256144	hgsc.bcm.edu	37	11	48347124	48347144	+	In_Frame_Del	DEL	AAGTTGCCTGCACCAATACGT	AAGTTGCCTGCACCAATACGT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	AAGTTGCCTGCACCAATACGT	AAGTTGCCTGCACCAATACGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR4C3	NM_001004702	exon1	c.632_652del	p.211_218del	.	.	410	0	140	0	.	69
OR51A4	401666	ucsc.edu	37	11	4967678	4967678	+	Missense_Mutation	SNP	G	G	A	rs12271991	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR51A4	NM_001005329	exon1	c.C653T	p.S218F	.	.	517	130	177	32	G|0.937;A|0.063	71
OR51B2	79345	bcgsc.ca	37	11	5345104	5345104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR51B2	NM_033180	exon1	c.T424C	p.L142L	.	.	70	4	46	0	.	71
OR51F1	256892	bcgsc.ca	37	11	4791129	4791129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR51F1	NM_001004752	exon1	c.T19C	p.S7P	.	.	259	7	111	1	.	70
OR52E4	390081	bcgsc.ca	37	11	5906143	5906143	+	Silent	SNP	T	T	C	rs11823809	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR52E4	NM_001005165	exon1	c.T621C	p.Y207Y	.	.	453	12	154	0	T|0.612;C|0.388	70
OR52I1	390037	ucsc.edu	37	11	4615390	4615390	+	Missense_Mutation	SNP	C	C	T	rs77590086	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR52I1	NM_001005169	exon1	c.C122T	p.T41I	.	.	259	88	120	32	T|1.000;|0.000	24
OR52N2	390077	bcgsc.ca	37	11	5841875	5841875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR52N2	NM_001005174	exon1	c.T310C	p.F104L	.	.	164	7	112	0	.	70
OR56B1	387748	bcgsc.ca	37	11	5758062	5758062	+	Missense_Mutation	SNP	T	T	C	rs7397032	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR56B1	NM_001005180	exon1	c.T316C	p.C106R	.	.	219	6	112	0	T|0.231;C|0.769	69
OR5A2	219981	bcgsc.ca	37	11	59189562	59189562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5A2	NM_001001954	exon1	c.A865G	p.I289V	.	.	134	5	80	0	.	68
OR5H14	403273	bcgsc.ca	37	3	97868643	97868643	+	Silent	SNP	T	T	C	rs147719778	by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5H14	NM_001005514	exon1	c.T414C	p.N138N	.	.	814	56	110	0	T|0.983;C|0.017	91
OR5H14	403273	bcgsc.ca	37	3	97868675	97868675	+	Missense_Mutation	SNP	A	A	T	rs145464091	byfrequency;alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5H14	NM_001005514	exon1	c.A446T	p.Y149F	.	.	961	55	159	0	A|1.000;G|0.000	91
OR5H14	403273	bcgsc.ca	37	3	97868677	97868677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5H14	NM_001005514	exon1	c.G448C	p.V150L	.	.	959	54	160	0	.	91
OR5H14	403273	hgsc.bcm.edu	37	3	97868538	97868548	+	Frame_Shift_Del	DEL	GTTTGCAATCA	GTTTGCAATCA	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GTTTGCAATCA	GTTTGCAATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5H14	NM_001005514	exon1	c.309_319del	p.103_107del	.	.	374	0	134	0	.	91
OR5H15	403274	hgsc.bcm.edu	37	3	97887758	97887780	+	Frame_Shift_Del	DEL	GGATATCATCCACAGTGACCCCA	GGATATCATCCACAGTGACCCCA	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GGATATCATCCACAGTGACCCCA	GGATATCATCCACAGTGACCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5H15	NM_001005515	exon1	c.215_237del	p.72_79del	.	.	1994	0	192	0	.	92
OR5K3	403277	bcgsc.ca	37	3	98109640	98109640	+	Missense_Mutation	SNP	G	G	A	rs13068323	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5K3	NM_001005516	exon1	c.G131A	p.G44D	.	.	828	16	169	1	G|0.846;A|0.154	68
OR5L2	26338	ucsc.edu	37	11	55595012	55595012	+	Silent	SNP	A	A	T	rs35645945	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5L2	NM_001004739	exon1	c.A318T	p.T106T	.	.	118	44	62	3	A|0.975;T|0.025	69
OR5P2	120065	bcgsc.ca	37	11	7817665	7817665	+	Silent	SNP	T	T	C	rs72484720	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR5P2	NM_153444	exon1	c.A825G	p.T275T	.	.	104	7	65	0	T|0.738;C|0.262	496
OR6B3	150681	ucsc.edu	37	2	240985347	240985347	+	Missense_Mutation	SNP	G	G	A	rs61730684	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR6B3	NM_173351	exon1	c.C143T	p.T48I	.	.	123	29	76	10	G|0.122;A|0.878	68
OR6M1	390261	ucsc.edu;bcgsc.ca	37	11	123676388	123676388	+	Missense_Mutation	SNP	G	G	A	rs76301014	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR6M1	NM_001005325	exon1	c.C670T	p.R224C	.	.	31	4	44	0	G|0.858;A|0.142	70
OR7A10	390892	bcgsc.ca	37	19	14952425	14952425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR7A10	NM_001005190	exon1	c.A265G	p.N89D	.	.	81	4	70	0	.	68
OR8H2	390151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55872714	55872714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR8H2	NM_001005200	exon1	c.C196A	p.H66N	.	.	184	18	99	0	.	70
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142724155	142724155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR9A2	NM_001001658	exon1	c.T65G	p.L22R	.	.	146	51	82	0	.	69
OR9Q1	219956	bcgsc.ca	37	11	57947264	57947264	+	Silent	SNP	C	C	G	rs11229273	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR9Q1	NM_001005212	exon3	c.C348G	p.A116A	.	.	282	10	123	0	C|0.747;G|0.253	69
ORC6	23594	bcgsc.ca	37	16	46731413	46731413	+	Silent	SNP	T	T	C	rs34343511	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ORC6	NM_014321	exon7	c.T675C	p.D225D	.	.	216	6	133	0	T|0.984;C|0.016	205
OSBPL1A	114876	ucsc.edu;bcgsc.ca	37	18	21776105	21776105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OSBPL1A	NM_080597	exon18	c.G1661A	p.R554K	.	.	34	4	39	0	.	94
OTOF	9381	bcgsc.ca	37	2	26741961	26741961	+	Missense_Mutation	SNP	G	G	A	rs13031859	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OTOF	NM_194248	exon4	c.C244T	p.R82C	.	.	120	6	39	0	G|0.687;A|0.313	135
OVGP1	5016	ucsc.edu;bcgsc.ca	37	1	111957583	111957583	+	Missense_Mutation	SNP	A	A	G	rs1126656	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OVGP1	NM_002557	exon11	c.T1540C	p.Y514H	.	.	97	10	55	0	A|0.774;G|0.226	135
OXCT1	5019	bcgsc.ca	37	5	41807527	41807527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OXCT1	NM_000436	exon8	c.T746C	p.V249A	.	.	62	4	40	0	.	133
OXCT1	5019	bcgsc.ca	37	5	41842803	41842803	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OXCT1	NM_000436	exon6	c.G645A	p.A215A	.	.	64	4	38	0	.	133
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25835782	25835782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OXSM	NM_017897	exon3	c.G1177T	p.V393F	.	.	122	18	89	0	.	132
P4HA2	8974	bcgsc.ca	37	5	131549711	131549711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	P4HA2	NM_001017974	exon5	c.T367C	p.F123L	.	.	76	5	66	0	.	68
PABPC1	26986	bcgsc.ca	37	8	101730315	101730315	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PABPC1	NM_002568	exon2	c.G387A	p.K129K	.	.	123	13	79	0	.	68
PAF1	54623	bcgsc.ca	37	19	39880011	39880011	+	Silent	SNP	G	G	A	rs2074852	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAF1	NM_019088	exon6	c.C372T	p.H124H	.	.	123	5	77	0	A|0.060;C|0.007	69
PAG1	55824	bcgsc.ca	37	8	81903760	81903760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_018440	exon5	c.A131G	p.K44R	.	.	233	10	89	1	.	.
PAGE2	203569	bcgsc.ca	37	X	55116466	55116466	+	Missense_Mutation	SNP	C	C	G	rs1845444	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAGE2	NM_207339	exon2	c.C13G	p.L5V	.	.	472	16	150	0	C|0.074;G|0.926	92
PAGE3	139793	bcgsc.ca	37	X	55289774	55289774	+	RNA	SNP	T	T	C	rs4826381	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAGE3	.	.	.	.	.	.	162	8	74	0	0|0.015;C|0.790	108
PALLD	23022	bcgsc.ca	37	4	169606649	169606649	+	Missense_Mutation	SNP	C	C	A	rs62333891	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PALLD	NM_001166108	exon6	c.C1274A	p.T425N	.	.	120	5	106	0	C|0.887;A|0.113	94
PAN2	9924	bcgsc.ca	37	12	56716893	56716893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAN2	NM_001127460	exon17	c.A2458G	p.N820D	.	.	86	4	59	0	.	702
PAPPA	5069	bcgsc.ca	37	9	118989780	118989780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAPPA	NM_002581	exon6	c.T2182C	p.S728P	.	.	58	4	43	0	.	77
PARP4	143	bcgsc.ca	37	13	25000617	25000617	+	Missense_Mutation	SNP	C	C	G	rs7571	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PARP4	NM_006437	exon33	c.G4966C	p.A1656P	.	.	291	8	136	0	C|0.531;G|0.469	94
PASD1	139135	bcgsc.ca	37	X	150840185	150840185	+	Silent	SNP	T	T	C	rs6627174	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PASD1	NM_173493	exon13	c.T1371C	p.G457G	.	.	76	7	43	0	0|0.003;C|0.270	133
PAXIP1	22976	hgsc.bcm.edu	37	7	154760558	154760558	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAXIP1	NM_007349	exon7	c.A1353G	p.Q451Q	.	.	130	16	46	0	.	228
PAXIP1	22976	hgsc.bcm.edu	37	7	154760561	154760561	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAXIP1	NM_007349	exon7	c.G1350A	p.Q450Q	.	.	130	12	46	0	.	228
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164781342	164781342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PBX1	NM_001204963	exon6	c.C953A	p.A318D	.	.	180	26	87	0	.	659
PBXIP1	57326	bcgsc.ca	37	1	154918096	154918096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PBXIP1	NM_020524	exon10	c.A2054G	p.E685G	.	.	83	4	33	0	.	153
PCDH7	5099	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	31144428	31144428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCDH7	NM_001173523	exon3	c.C3725T	p.P1242L	.	.	20	4	14	0	.	229
PCDHB5	26167	bcgsc.ca	37	5	140515887	140515887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCDHB5	NM_015669	exon1	c.T871C	p.F291L	.	.	75	4	52	0	.	95
PCID2	55795	bcgsc.ca	37	13	113854812	113854812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCID2	NM_018386	exon2	c.A55G	p.S19G	.	.	92	5	65	0	.	90
PCLO	27445	bcgsc.ca	37	7	82455964	82455964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCLO	NM_014510	exon18	c.A14356G	p.T4786A	.	.	75	4	55	0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82583266	82583266	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCLO	NM_014510	exon5	c.T7003C	p.L2335L	.	.	360	82	120	0	.	29
PDCD2L	84306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34916969	34916969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDCD2L	NM_032346	exon7	c.C1021G	p.P341A	.	.	67	23	67	0	.	91
PDE10A	10846	bcgsc.ca	37	6	165792717	165792717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDE10A	NM_001130690	exon18	c.A1951G	p.T651A	.	.	93	4	115	0	.	519
PDE4DIP	9659	ucsc.edu	37	1	144855866	144855866	+	Silent	SNP	A	A	G	rs72473741		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDE4DIP	NM_014644	exon41	c.T6687C	p.G2229G	.	.	60	18	22	0	.	663
PDE5A	8654	bcgsc.ca	37	4	120528157	120528157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDE5A	NM_001083	exon2	c.T448C	p.S150P	.	.	70	4	92	0	.	90
PDE6A	5145	bcgsc.ca	37	5	149265888	149265888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDE6A	NM_000440	exon14	c.T1778C	p.V593A	.	.	122	5	65	0	.	92
PDE6B	5158	ucsc.edu;bcgsc.ca	37	4	628612	628612	+	Silent	SNP	C	C	T	rs149293844	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDE6B	NM_001145291	exon2	c.C615T	p.D205D	.	.	119	25	46	0	C|0.996;T|0.004	90
PDLIM5	10611	bcgsc.ca	37	4	95539185	95539185	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDLIM5	NM_001256426	exon12	c.T1038C	p.A346A	.	.	25	3	38	0	.	117
PEF1	553115	bcgsc.ca	37	1	32096265	32096265	+	Silent	SNP	A	A	G	rs1061770	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PEF1	NM_012392	exon5	c.T804C	p.I268I	.	.	68	4	61	0	A|0.586;G|0.414	68
PEX11B	8799	bcgsc.ca	37	1	145517337	145517337	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PEX11B	NM_003846	exon2	c.T121C	p.L41L	.	.	102	5	64	0	.	90
PEX1	5189	bcgsc.ca	37	7	92132447	92132447	+	Missense_Mutation	SNP	T	T	C	rs201727361		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PEX1	NM_000466	exon13	c.A2134G	p.S712G	.	.	91	4	61	0	T|0.999;C|0.000	91
PGA3	643834	ucsc.edu	37	11	60971069	60971069	+	Silent	SNP	A	A	G	rs1610547	bycluster;byfrequency;by2hit2allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PGA3	NM_001079807	exon1	c.A33G	p.A11A	.	.	518	231	113	29	A|0.556;G|0.444	24
PGM2L1	283209	bcgsc.ca	37	11	74085463	74085463	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PGM2L1	NM_173582	exon2	c.A276G	p.T92T	.	.	78	4	68	0	.	91
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169846627	169846627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHC3	NM_024947	exon8	c.C1633G	p.Q545E	.	.	86	31	64	0	.	227
PHF20	51230	bcgsc.ca	37	20	34502088	34502088	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHF20	NM_016436	exon12	c.T1794C	p.S598S	.	.	85	4	45	0	.	515
PHF21A	51317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45975168	45975168	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHF21A	NM_016621	exon10	c.A1005G	p.K335K	.	.	396	190	126	0	.	92
PHIP	55023	bcgsc.ca	37	6	79724878	79724878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHIP	NM_017934	exon15	c.T1445C	p.L482P	.	.	92	4	56	0	.	579
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21161719	21161719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon10	c.A1099G	p.T367A	.	.	54	28	45	0	.	454
PI4KA	5297	ucsc.edu;bcgsc.ca	37	22	21174845	21174845	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon5	c.T511C	p.L171L	.	.	41	4	38	0	.	454
PIR	8544	bcgsc.ca	37	X	15415583	15415583	+	Silent	SNP	C	C	T	rs8094	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PIR	NM_001018109	exon8	c.G681A	p.Q227Q	.	.	131	10	102	0	0|0.004;T|0.469	131
PITX3	5309	bcgsc.ca	37	10	103991381	103991381	+	Silent	SNP	G	G	A	rs2281983	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PITX3	NM_005029	exon3	c.C285T	p.I95I	.	.	86	6	61	0	G|0.328;A|0.672	226
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94353216	94353216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PIWIL4	NM_152431	exon19	c.C2348A	p.T783N	.	.	89	13	88	0	.	91
PKHD1L1	93035	bcgsc.ca	37	8	110471827	110471827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PKHD1L1	NM_177531	exon47	c.C7008A	p.H2336Q	.	.	76	4	44	0	.	145
PKN2	5586	bcgsc.ca	37	1	89271641	89271641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PKN2	NM_006256	exon12	c.T1744C	p.S582P	.	.	216	7	94	0	.	522
PLA2G2F	64600	bcgsc.ca	37	1	20474730	20474730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLA2G2F	NM_022819	exon5	c.A472G	p.K158E	.	.	141	5	110	0	.	91
PLA2R1	22925	bcgsc.ca	37	2	160901383	160901383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLA2R1	NM_001195641	exon2	c.T395C	p.V132A	.	.	97	5	52	0	.	93
PLAG1	5324	bcgsc.ca	37	8	57079064	57079064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLAG1	NM_001114634	exon4	c.C1241A	p.P414Q	.	.	68	4	45	0	.	1107
PLBD1	79887	bcgsc.ca	37	12	14664595	14664595	+	Silent	SNP	A	A	G	rs10846013	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLBD1	NM_024829	exon7	c.T895C	p.L299L	.	.	89	6	70	0	A|0.734;G|0.266	90
PLBD2	196463	bcgsc.ca	37	12	113812357	113812357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLBD2	NM_173542	exon4	c.A622G	p.T208A	.	.	64	4	43	0	.	68
PLD5	200150	bcgsc.ca	37	1	242428735	242428735	+	Missense_Mutation	SNP	C	C	G	rs12405001	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLD5	NM_152666	exon5	c.G511C	p.E171Q	.	.	223	7	126	0	C|0.986;G|0.014	96
PLEKHG1	57480	bcgsc.ca	37	6	151161018	151161018	+	Silent	SNP	A	A	G	rs17348890	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLEKHG1	NM_001029884	exon17	c.A3144G	p.R1048R	.	.	151	6	93	0	A|0.883;G|0.117	92
PLEKHM2	23207	bcgsc.ca	37	1	16044401	16044401	+	Silent	SNP	G	G	A	rs16851970	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLEKHM2	NM_015164	exon4	c.G291A	p.L97L	.	.	79	4	70	0	G|0.797;A|0.203	23
PLIN4	729359	bcgsc.ca	37	19	4511875	4511875	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLIN4	NM_001080400	exon3	c.A2055C	p.T685T	.	.	233	11	125	1	.	68
PLIN4	729359	mdanderson.org	37	19	4511223	4511223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLIN4	NM_001080400	exon3	c.G2707A	p.V903M	.	.	85	14	71	0	.	68
PLXND1	23129	bcgsc.ca	37	3	129279186	129279186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLXND1	NM_015103	exon31	c.T5120C	p.L1707P	.	.	124	5	61	0	.	90
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129303388	129303388	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLXND1	NM_015103	exon6	c.C1869T	p.I623I	.	.	92	41	35	0	.	90
PM20D1	148811	bcgsc.ca	37	1	205811845	205811845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PM20D1	NM_152491	exon7	c.A862G	p.S288G	.	.	75	4	60	0	.	69
PNLDC1	154197	bcgsc.ca	37	6	160225012	160225012	+	Silent	SNP	T	T	G	rs35435543	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNLDC1	NM_173516	exon5	c.T231G	p.S77S	.	.	249	7	129	0	T|0.564;G|0.436	90
PNLIPRP2	5408	bcgsc.ca	37	10	118397894	118397894	+	Missense_Mutation	SNP	A	A	G	rs4751996	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNLIPRP2	.	.	.	.	.	.	108	6	95	0	A|0.512;G|0.487	67
PNMA3	29944	ucsc.edu;bcgsc.ca	37	X	152226798	152226798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNMA3	NM_013364	exon2	c.C1386T	p.A462A	.	.	37	4	31	0	.	600
PNP	4860	bcgsc.ca	37	14	20940606	20940606	+	Missense_Mutation	SNP	G	G	A	rs1049564	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNP	NM_000270	exon2	c.G151A	p.G51S	.	.	69	4	51	0	G|0.786;A|0.214	229
PNPLA6	10908	ucsc.edu;bcgsc.ca	37	19	7623941	7623941	+	Silent	SNP	G	G	A	rs112133109	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PNPLA6	NM_001166111	exon30	c.G3633A	p.Q1211Q	.	.	49	5	41	0	A|0.010;C|0.000;G|0.990	47
POLE	5426	ucsc.edu	37	12	133237571	133237571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POLE	NM_006231	exon25	c.A3044G	p.D1015G	.	.	52	6	27	3	.	233
POLR2A	5430	ucsc.edu;bcgsc.ca	37	17	7400815	7400815	+	Silent	SNP	T	T	C	rs2228128	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POLR2A	NM_000937	exon6	c.T960C	p.N320N	.	.	46	4	42	0	T|0.818;C|0.182	91
POLR3B	55703	broad.mit.edu	37	12	106820975	106820975	+	Missense_Mutation	SNP	C	C	T	rs201079775		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POLR3B	NM_018082	exon13	c.C1102T	p.L368F	.	.	30	13	22	1	C|0.997;T|0.003	91
POLR3F	10621	bcgsc.ca	37	20	18462420	18462420	+	Missense_Mutation	SNP	C	C	T	rs201177947		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POLR3F	NM_006466	exon8	c.C839T	p.T280I	.	.	94	4	55	0	C|1.000;T|0.000	90
POLR3K	51728	bcgsc.ca	37	16	97470	97470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POLR3K	NM_016310	exon3	c.A287G	p.K96R	.	.	85	5	46	0	.	90
POM121	9883	ucsc.edu	37	7	72413874	72413874	+	Silent	SNP	T	T	C	rs61749860	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POM121	NM_172020	exon11	c.T2547C	p.N849N	.	.	373	71	80	14	T|0.500;C|0.500	226
POTEG	404785	ucsc.edu	37	14	19553642	19553642	+	Missense_Mutation	SNP	A	A	G	rs57000026		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	POTEG	NM_001005356	exon1	c.A226G	p.S76G	.	.	277	138	101	16	G|1.000;|0.000	1
PPA2	27068	bcgsc.ca	37	4	106317429	106317429	+	Missense_Mutation	SNP	C	C	G	rs13787	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPA2	NM_176869	exon9	c.G846C	p.K282N	.	.	151	5	129	0	C|0.611;G|0.389	91
PPAPDC1A	196051	bcgsc.ca	37	10	122280487	122280487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPAPDC1A	NM_001030059	exon5	c.C325T	p.R109C	.	.	138	5	106	0	.	135
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	23815325	23815325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPARGC1A	NM_013261	exon8	c.G1781T	p.R594I	.	.	52	9	52	0	.	230
PPFIA3	8541	bcgsc.ca	37	19	49643259	49643259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPFIA3	NM_003660	exon18	c.A2282G	p.K761R	.	.	58	4	50	0	.	226
PPFIA4	8497	bcgsc.ca	37	1	203024767	203024767	+	Silent	SNP	C	C	T	rs3736314	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPFIA4	NM_015053	exon3	c.C519T	p.A173A	.	.	84	5	36	0	C|0.848;T|0.152	230
PPHLN1	51535	bcgsc.ca	37	12	42839795	42839795	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPHLN1	NM_001143787	exon11	c.C981T	p.H327H	.	.	76	5	36	0	.	154
PPIAL4G	644591	ucsc.edu	37	1	143767643	143767643	+	Missense_Mutation	SNP	T	T	C	rs78862507	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001123068	exon1	c.A206G	p.H69R	.	.	198	61	91	0	T|0.667;C|0.333	.
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36823793	36823793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPIL1	NM_016059	exon4	c.A297G	p.A99A	.	.	63	35	28	0	.	91
PPIL2	23759	bcgsc.ca	37	22	22040824	22040824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPIL2	NM_014337	exon11	c.T767C	p.V256A	.	.	71	4	39	0	.	92
PPP1R21	129285	bcgsc.ca	37	2	48687287	48687287	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_152994	exon6	c.A594G	p.E198E	.	.	80	4	42	0	.	.
PPP2R1B	5519	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111624197	111624197	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPP2R1B	NM_002716	exon9	c.A1134G	p.L378L	.	.	55	11	56	1	.	658
PPP2R5E	5529	bcgsc.ca	37	14	63863405	63863405	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPP2R5E	NM_006246	exon6	c.T579C	p.P193P	.	.	80	4	68	0	.	658
PPP6R2	9701	bcgsc.ca	37	22	50875967	50875967	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPP6R2	NM_001242898	exon16	c.A1716G	p.T572T	.	.	77	4	42	0	.	92
PQLC2	54896	ucsc.edu;bcgsc.ca	37	1	19652063	19652063	+	Silent	SNP	G	G	A	rs11558390	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PQLC2	NM_001040125	exon4	c.G369A	p.T123T	.	.	69	6	33	0	G|0.772;A|0.228	90
PRAMEF1	65121	bcgsc.ca	37	1	12854530	12854530	+	Missense_Mutation	SNP	C	C	G	rs1063776	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRAMEF1	NM_023013	exon3	c.C754G	p.Q252E	.	.	247	18	128	0	C|0.318;G|0.682	22
PRAMEF1	65121	ucsc.edu	37	1	12854162	12854162	+	Missense_Mutation	SNP	C	C	T	rs199893374		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRAMEF1	NM_023013	exon3	c.C386T	p.T129M	.	.	195	44	116	12	.	22
PRAMEF1	65121	ucsc.edu	37	1	12854356	12854356	+	Missense_Mutation	SNP	T	T	C	rs80079739	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRAMEF1	NM_023013	exon3	c.T580C	p.Y194H	.	.	588	185	182	39	T|0.500;C|0.500	22
PRAMEF4	400735	ucsc.edu	37	1	12943038	12943038	+	Missense_Mutation	SNP	A	A	C	rs3121081		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRAMEF4	NM_001009611	exon2	c.T178G	p.S60A	.	.	104	60	64	0	T|0.852;G|0.148	45
PRB1	5542	bcgsc.ca	37	12	11506211	11506211	+	Missense_Mutation	SNP	A	A	C	rs76504934	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRB1	NM_199353	exon4	c.T427G	p.S143A	.	.	557	24	161	0	A|0.446;C|0.554	90
PRB4	5545	bcgsc.ca	37	12	11461154	11461154	+	Splice_Site	SNP	C	C	G	rs7297795	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRB4	NM_002723	exon4	c.762+1G>C	.	.	.	129	5	97	0	C|0.988;G|0.012	91
PRDM16	63976	bcgsc.ca	37	1	3342709	3342709	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRDM16	NM_022114	exon14	c.A3204G	p.K1068K	.	.	65	4	50	0	.	660
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90126813	90126813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRDM7	NM_001098173	exon9	c.G1169C	p.S390T	.	.	181	63	122	0	.	92
PREX1	57580	bcgsc.ca	37	20	47364361	47364361	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PREX1	NM_020820	exon2	c.G276T	p.T92T	.	.	71	4	33	0	.	231
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64084858	64084858	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRICKLE2	NM_198859	exon8	c.C2404A	p.R802R	.	.	119	19	80	0	.	95
PRKAR2B	5577	bcgsc.ca	37	7	106797440	106797440	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKAR2B	NM_002736	exon9	c.T930C	p.A310A	.	.	180	7	114	1	.	1083
PRKCDBP	112464	broad.mit.edu;bcgsc.ca	37	11	6340705	6340705	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCDBP	NM_145040	exon2	c.G474A	p.L158L	.	.	47	5	34	0	.	115
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6553138	6553138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCQ	NM_006257	exon3	c.T137A	p.I46N	.	.	98	46	98	0	.	1380
PRMT1	3276	bcgsc.ca	37	19	50188294	50188294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRMT1	NM_001536	exon8	c.G759T	p.K253N	.	.	60	5	35	0	.	91
PRMT3	10196	bcgsc.ca	37	11	20515799	20515799	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRMT3	NM_005788	exon15	c.A1485G	p.A495A	.	.	88	4	72	0	.	90
PRPF6	24148	bcgsc.ca	37	20	62614540	62614540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRPF6	NM_012469	exon2	c.A212G	p.E71G	.	.	65	4	35	0	.	70
PRR4	11272	bcgsc.ca	37	12	10999708	10999708	+	Missense_Mutation	SNP	T	T	C	rs1047699	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRR4	NM_007244	exon3	c.A359G	p.Q120R	.	.	107	5	114	0	T|0.236;C|0.764	90
PRRT3	285368	ucsc.edu	37	3	9990807	9990807	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRRT3	NM_207351	exon2	c.T993C	p.A331A	.	.	39	4	12	0	.	90
PRSS50	29122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46755769	46755769	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRSS50	NM_013270	exon4	c.C693T	p.D231D	.	.	86	61	50	0	.	90
PSAT1	29968	bcgsc.ca	37	9	80919756	80919756	+	Silent	SNP	T	T	G	rs3739474	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PSAT1	NM_021154	exon4	c.T297G	p.A99A	.	.	96	7	66	0	T|0.414;G|0.586	91
PTCH2	8643	bcgsc.ca	37	1	45289031	45289031	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTCH2	NM_001166292	exon20	c.G3141A	p.R1047R	.	.	73	4	49	0	.	851
PTCHD3	374308	bcgsc.ca	37	10	27687645	27687645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTCHD3	NM_001034842	exon4	c.G1882C	p.D628H	.	.	58	5	48	0	.	94
PTDSS1	9791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97345763	97345763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTDSS1	NM_014754	exon13	c.C1391T	p.S464L	.	.	113	17	64	0	.	91
PTENP1	11191	bcgsc.ca	37	9	33676027	33676027	+	RNA	SNP	C	C	A	rs855465	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	51	4	61	0	T|0.062;G|0.451	.
PTPDC1	138639	bcgsc.ca	37	9	96850119	96850119	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPDC1	NM_001253829	exon3	c.T423C	p.T141T	.	.	80	4	58	0	.	227
PTPN23	25930	bcgsc.ca	37	3	47446215	47446215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPN23	NM_015466	exon3	c.T233C	p.L78P	.	.	96	5	45	0	.	227
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70954625	70954625	+	Missense_Mutation	SNP	C	C	G	rs112738980	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon17	c.G4258C	p.D1420H	.	.	138	15	90	0	.	226
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70984008	70984008	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon8	c.G1786C	p.D596H	.	.	227	25	99	0	.	226
PVRIG	79037	bcgsc.ca	37	7	99817649	99817649	+	Missense_Mutation	SNP	C	C	T	rs145503466		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PVRIG	NM_024070	exon2	c.C116T	p.A39V	.	.	171	7	58	0	C|1.000;T|0.000	24
PWP2	5822	bcgsc.ca	37	21	45544535	45544535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PWP2	NM_005049	exon15	c.T1892C	p.I631T	.	.	62	4	41	0	.	91
PXK	54899	bcgsc.ca	37	3	58368351	58368351	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PXK	NM_017771	exon4	c.A312G	p.T104T	.	.	81	4	55	0	.	334
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	QRICH2	NM_032134	exon4	c.A1802T	p.D601V	.	.	114	6	64	0	.	94
QRICH2	84074	hgsc.bcm.edu	37	17	74288539	74288571	+	In_Frame_Del	DEL	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	QRICH2	NM_032134	exon4	c.1739_1771del	p.580_591del	.	.	97	0	60	0	.	94
RAB11FIP1	80223	bcgsc.ca	37	8	37730080	37730080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RAB11FIP1	NM_001002814	exon4	c.G2240T	p.G747V	.	.	125	5	74	0	.	92
RAB27B	5874	bcgsc.ca	37	18	52555308	52555308	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RAB27B	NM_004163	exon5	c.A426G	p.E142E	.	.	65	4	54	0	.	227
RALGAPA2	57186	bcgsc.ca	37	20	20493222	20493222	+	Silent	SNP	G	G	A	rs35039408	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RALGAPA2	NM_020343	exon32	c.C4791T	p.P1597P	.	.	90	6	57	0	G|0.683;A|0.317	24
RANBP3	8498	bcgsc.ca	37	19	5918584	5918584	+	Missense_Mutation	SNP	C	C	T	rs188045006	by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RANBP3	NM_007322	exon15	c.G1396A	p.D466N	.	.	90	5	75	0	C|0.999;T|0.000	272
RAPGEF6	51735	bcgsc.ca	37	5	130834134	130834134	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RAPGEF6	NM_001164388	exon13	c.1419+2T>C	.	.	.	52	4	56	0	.	661
RARS	5917	bcgsc.ca	37	5	167922413	167922413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RARS	NM_002887	exon6	c.T673C	p.F225L	.	.	148	5	118	1	.	93
RASAL3	64926	bcgsc.ca	37	19	15563960	15563960	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_022904	exon15	c.A2628G	p.Q876Q	.	.	61	4	32	0	.	.
RASD2	23551	bcgsc.ca	37	22	35947850	35947850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RASD2	NM_014310	exon3	c.A572G	p.K191R	.	.	63	5	33	0	.	659
RASL11B	65997	bcgsc.ca	37	4	53731553	53731553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RASL11B	NM_023940	exon4	c.T328C	p.W110R	.	.	134	6	73	0	.	946
RBL2	5934	bcgsc.ca	37	16	53514570	53514570	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RBL2	NM_005611	exon20	c.A2973G	p.T991T	.	.	133	5	83	0	.	841
RBM22	55696	bcgsc.ca	37	5	150072840	150072840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RBM22	NM_018047	exon9	c.A941G	p.E314G	.	.	47	4	34	0	.	226
RBM33	155435	bcgsc.ca	37	7	155537687	155537687	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RBM33	NM_053043	exon14	c.T2370C	p.Y790Y	.	.	92	4	58	0	.	23
RBMXL2	27288	bcgsc.ca	37	11	7110363	7110363	+	Silent	SNP	G	G	A	rs4758158	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RBMXL2	NM_014469	exon1	c.G12A	p.A4A	.	.	45	5	33	0	G|0.709;A|0.291	68
RCAN1	1827	bcgsc.ca	37	21	35890409	35890409	+	Silent	SNP	C	C	T	rs59601528	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RCAN1	NM_004414	exon4	c.G732A	p.P244P	.	.	161	8	119	0	C|0.920;G|0.000;T|0.080	90
RCC1	1104	bcgsc.ca	37	1	28856384	28856384	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RCC1	NM_001048194	exon2	c.A6G	p.S2S	.	.	54	4	47	0	.	228
RELN	5649	bcgsc.ca	37	7	103155705	103155705	+	Silent	SNP	A	A	G	rs2229864	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RELN	NM_173054	exon50	c.T8046C	p.H2682H	.	.	121	5	45	0	A|0.467;G|0.533	574
RETNLB	84666	hgsc.bcm.edu	37	3	108474715	108474716	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RETNLB	NM_032579	exon3	c.246_247insG	p.C82fs	.	.	310	27	62	0	.	91
REXO1	57455	bcgsc.ca	37	19	1820323	1820323	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	REXO1	NM_020695	exon6	c.C2466A	p.L822L	.	.	76	4	66	0	.	90
RFPL1	5988	bcgsc.ca	37	22	29837537	29837537	+	Missense_Mutation	SNP	T	T	C	rs3804076	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RFPL1	NM_021026	exon2	c.T380C	p.M127T	.	.	151	6	122	0	T|0.702;C|0.298	90
RFX3	5991	bcgsc.ca	37	9	3346682	3346682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RFX3	NM_134428	exon4	c.A200G	p.Y67C	.	.	82	4	59	0	.	93
RHPN2	85415	ucsc.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RHPN2	NM_033103	exon3	c.G217A	p.V73M	.	.	35	9	19	2	.	516
RIBC2	26150	bcgsc.ca	37	22	45821904	45821904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RIBC2	.	.	.	.	.	.	89	4	57	2	.	90
RIF1	55183	bcgsc.ca	37	2	152321828	152321828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RIF1	NM_018151	exon30	c.A5794G	p.R1932G	.	.	128	5	91	0	.	300
RIMS2	9699	bcgsc.ca	37	8	104973351	104973351	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RIMS2	NM_001100117	exon15	c.T2760C	p.G920G	.	.	80	4	52	0	.	279
RINT1	60561	hgsc.bcm.edu	37	7	105195558	105195558	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RINT1	NM_021930	exon11	c.C1555T	p.R519X	.	.	123	8	68	0	.	517
RIOK2	55781	bcgsc.ca	37	5	96506966	96506966	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RIOK2	NM_001159749	exon6	c.T723C	p.H241H	.	.	79	4	71	0	.	419
RNF115	27246	bcgsc.ca	37	1	145688095	145688095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF115	NM_014455	exon9	c.A790G	p.T264A	.	.	159	8	99	0	.	91
RNF130	55819	bcgsc.ca	37	5	179440232	179440232	+	Silent	SNP	A	A	G	rs148769235	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF130	NM_018434	exon3	c.T522C	p.S174S	.	.	69	4	53	0	A|0.999;G|0.001	227
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25435486	25435486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF17	NM_031277	exon27	c.C3855T	p.P1285P	.	.	216	28	114	0	.	228
RNF213	57674	bcgsc.ca	37	17	78321374	78321374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF213	NM_001256071	exon29	c.A9239G	p.Y3080C	.	.	41	4	25	0	.	577
RNF213	57674	ucsc.edu	37	17	78320397	78320397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF213	NM_001256071	exon29	c.G8262A	p.M2754I	.	.	40	4	15	0	.	577
RNH1	6050	ucsc.edu	37	11	499056	499056	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNH1	NM_203383	exon6	c.C573T	p.C191C	.	.	44	4	25	0	.	90
RNR2	6053	broad.mit.edu	37	MT	3169	3169	+	RNA	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	200	10	41	1	.	.
ROS1	6098	bcgsc.ca	37	6	117674284	117674284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ROS1	NM_002944	exon26	c.G4190T	p.W1397L	.	.	141	7	94	1	.	1353
ROS1	6098	bcgsc.ca	37	6	117714462	117714462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ROS1	NM_002944	exon11	c.A1187G	p.N396S	.	.	76	4	71	0	.	1353
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10467681	10467686	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TCCTTC	TCCTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RP1L1	NM_178857	exon4	c.3922_3927del	p.1308_1309del	.	.	307	17	95	0	.	139
RPA1	6117	bcgsc.ca	37	17	1733399	1733399	+	Silent	SNP	A	A	G	rs5030749	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RPA1	NM_002945	exon1	c.A12G	p.Q4Q	.	.	125	9	66	1	A|0.425;G|0.575	651
RPL18	6141	bcgsc.ca	37	19	49119341	49119341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RPL18	NM_000979	exon5	c.T416C	p.L139P	.	.	61	4	32	0	.	90
RPS6KA1	6195	bcgsc.ca	37	1	26883511	26883511	+	Missense_Mutation	SNP	A	A	C	rs2229712	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RPS6KA1	NM_001006665	exon12	c.A1031C	p.K344T	.	.	64	4	51	2	A|0.833;C|0.167	510
RPS6KA6	27330	bcgsc.ca	37	X	83320017	83320017	+	Missense_Mutation	SNP	C	C	T	rs6616890	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RPS6KA6	NM_014496	exon21	c.G2074A	p.D692N	.	.	311	8	131	0	C|0.907;0|0.015	615
RREB1	6239	bcgsc.ca	37	6	7211857	7211857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RREB1	NM_001003700	exon8	c.T622C	p.F208L	.	.	145	5	77	0	.	144
RRP36	88745	bcgsc.ca	37	6	42992855	42992855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RRP36	NM_033112	exon2	c.T263C	p.V88A	.	.	86	4	42	0	.	90
RSRC1	51319	bcgsc.ca	37	3	157920861	157920861	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RSRC1	NM_016625	exon4	c.G321A	p.R107R	.	.	80	4	88	0	.	90
RTTN	25914	bcgsc.ca	37	18	67698204	67698204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RTTN	NM_173630	exon41	c.A5555G	p.K1852R	.	.	82	4	74	0	.	141
RTTN	25914	bcgsc.ca	37	18	67855458	67855458	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RTTN	NM_173630	exon10	c.T1191C	p.G397G	.	.	71	4	78	0	.	141
S100Z	170591	ucsc.edu;bcgsc.ca	37	5	76171252	76171252	+	Missense_Mutation	SNP	A	A	C	rs1320308	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	S100Z	NM_130772	exon3	c.A68C	p.E23A	.	.	75	7	46	0	C|0.618;N|0.001;A|0.381	91
SAMD9L	219285	bcgsc.ca	37	7	92762905	92762905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SAMD9L	NM_152703	exon5	c.G2380A	p.D794N	.	.	162	5	78	0	.	94
SASS6	163786	bcgsc.ca	37	1	100551146	100551146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SASS6	NM_194292	exon16	c.A1813G	p.R605G	.	.	128	5	71	0	.	70
SCAF8	22828	bcgsc.ca	37	6	155154430	155154430	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SCAF8	NM_014892	exon20	c.A3717G	p.K1239K	.	.	77	4	57	0	.	91
SCN11A	11280	bcgsc.ca	37	3	38936134	38936134	+	Missense_Mutation	SNP	C	C	T	rs33985936	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SCN11A	NM_014139	exon15	c.G2725A	p.V909I	.	.	184	8	84	0	C|0.801;T|0.199	99
SCRN3	79634	bcgsc.ca	37	2	175265771	175265771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SCRN3	NM_024583	exon4	c.A395G	p.D132G	.	.	171	6	110	0	.	91
SEC31B	25956	bcgsc.ca	37	10	102248648	102248648	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEC31B	NM_015490	exon24	c.T3255C	p.L1085L	.	.	72	4	46	0	.	91
SELPLG	6404	ucsc.edu;bcgsc.ca	37	12	109017674	109017674	+	Missense_Mutation	SNP	A	A	G	rs201851784	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SELPLG	NM_001206609	exon2	c.T458C	p.V153A	.	.	297	46	101	2	A|0.896;G|0.104	90
SEMA3C	10512	bcgsc.ca	37	7	80427508	80427508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3C	NM_006379	exon11	c.A1031G	p.D344G	.	.	193	7	87	0	.	515
SEMA3D	223117	broad.mit.edu;bcgsc.ca	37	7	84666204	84666204	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3D	NM_152754	exon11	c.1191+1G>A	.	.	.	69	6	59	0	.	138
SEMA3D	223117	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	84697509	84697509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEMA3D	NM_152754	exon5	c.C587A	p.T196K	.	.	109	12	56	1	.	138
SENP1	29843	bcgsc.ca	37	12	48468194	48468194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SENP1	NM_001267594	exon8	c.G853C	p.D285H	.	.	360	10	129	0	.	660
SEPN1	57190	bcgsc.ca	37	1	26142138	26142138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SEPN1	.	.	.	.	.	.	62	4	49	0	.	92
SERINC2	347735	bcgsc.ca	37	1	31898234	31898234	+	Silent	SNP	T	T	C	rs4949402	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SERINC2	NM_001199038	exon5	c.T477C	p.I159I	.	.	190	6	97	0	T|0.580;C|0.420	90
SERPINA9	327657	bcgsc.ca	37	14	94933640	94933640	+	Missense_Mutation	SNP	A	A	T	rs28583900	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SERPINA9	NM_175739	exon3	c.T762A	p.H254Q	.	.	53	5	50	0	A|0.681;T|0.319	226
SERPINA9	327657	ucsc.edu;bcgsc.ca	37	14	94933695	94933695	+	Missense_Mutation	SNP	G	G	A	rs17090921	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SERPINA9	NM_175739	exon3	c.C707T	p.P236L	.	.	32	4	35	0	G|0.689;A|0.311	226
SERPINB5	5268	bcgsc.ca	37	18	61170721	61170721	+	Silent	SNP	T	T	C	rs1455556	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SERPINB5	NM_002639	exon7	c.T894C	p.S298S	.	.	72	4	83	0	T|0.435;C|0.565	651
SERPINH1	871	bcgsc.ca	37	11	75279846	75279846	+	Silent	SNP	C	C	T	rs649257	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SERPINH1	NM_001207014	exon4	c.C693T	p.T231T	.	.	50	4	37	0	C|0.660;T|0.340	228
SETD7	80854	bcgsc.ca	37	4	140450326	140450326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SETD7	NM_030648	exon4	c.G421A	p.G141R	.	.	57	4	80	0	.	91
SETX	23064	bcgsc.ca	37	9	135163994	135163994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SETX	NM_015046	exon16	c.T6151C	p.S2051P	.	.	82	4	74	0	.	93
SFN	2810	bcgsc.ca	37	1	27190394	27190394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SFN	NM_006142	exon1	c.A691G	p.T231A	.	.	88	4	57	0	.	658
SFTPA2	729238	ucsc.edu	37	10	81319214	81319214	+	Missense_Mutation	SNP	G	G	T	rs35576782		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001098668	exon3	c.C26A	p.T9N	.	.	356	186	122	34	.	.
SFTPB	6439	bcgsc.ca	37	2	85895338	85895338	+	Missense_Mutation	SNP	T	T	G	rs2077079	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SFTPB	NM_198843	exon2	c.A5C	p.H2P	.	.	275	12	78	0	T|0.575;G|0.425	91
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2282393	2282393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SGSM2	NM_014853	exon23	c.C2963T	p.S988L	.	.	155	60	114	0	.	68
SH3D19	152503	bcgsc.ca	37	4	152056252	152056252	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SH3D19	NM_001009555	exon16	c.A1689G	p.R563R	.	.	163	5	128	1	.	92
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17795714	17795714	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SH3GL2	NM_003026	exon9	c.G1032A	p.V344V	.	.	277	59	109	0	.	91
SI	6476	bcgsc.ca	37	3	164741372	164741372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SI	NM_001041	exon26	c.A3085G	p.M1029V	.	.	93	4	65	0	.	104
SI	6476	bcgsc.ca	37	3	164780224	164780224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SI	NM_001041	exon9	c.G955A	p.G319S	.	.	136	5	91	0	.	104
SIPA1L2	57568	bcgsc.ca	37	1	232650264	232650264	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SIPA1L2	NM_020808	exon1	c.G822A	p.R274R	.	.	95	4	66	0	.	95
SIRPD	128646	bcgsc.ca	37	20	1532672	1532672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SIRPD	NM_178460	exon2	c.T86C	p.V29A	.	.	79	4	52	0	.	227
SLC10A6	345274	bcgsc.ca	37	4	87754477	87754477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC10A6	NM_197965	exon2	c.A478G	p.I160V	.	.	68	4	68	0	.	22
SLC12A3	6559	bcgsc.ca	37	16	56947243	56947243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC12A3	NM_000339	exon26	c.T3019C	p.S1007P	.	.	57	4	51	0	.	155
SLC13A3	64849	bcgsc.ca	37	20	45192083	45192083	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC13A3	NM_022829	exon12	c.C1602T	p.F534F	.	.	74	4	41	0	.	91
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	135390908	135390908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC13A4	NM_012450	exon4	c.G506A	p.G169D	.	.	108	13	41	0	.	90
SLC15A2	6565	bcgsc.ca	37	3	121646641	121646641	+	Silent	SNP	A	A	G	rs1143670	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC15A2	NM_021082	exon14	c.A1161G	p.A387A	.	.	86	6	67	0	A|0.537;G|0.463	91
SLC16A9	220963	bcgsc.ca	37	10	61414011	61414011	+	Missense_Mutation	SNP	G	G	T	rs2242206	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC16A9	NM_194298	exon5	c.C773A	p.T258K	.	.	433	12	165	0	G|0.740;T|0.260	93
SLC18A1	6570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20004896	20004896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC18A1	NM_003053	exon15	c.C1337A	p.S446Y	.	.	79	13	54	0	.	92
SLC1A1	6505	bcgsc.ca	37	9	4573991	4573991	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC1A1	NM_004170	exon8	c.T852C	p.L284L	.	.	87	4	69	0	.	514
SLC1A2	6506	bcgsc.ca	37	11	35308457	35308457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC1A2	NM_004171	exon8	c.A1133G	p.N378S	.	.	84	4	43	0	.	516
SLC24A6	80024	bcgsc.ca	37	12	113756809	113756809	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC24A6	NM_024959	exon8	c.A762G	p.Q254Q	.	.	71	4	36	0	.	90
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6458301	6458301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC25A23	NM_024103	exon2	c.G191A	p.G64D	.	.	13	12	13	0	.	92
SLC25A38	54977	bcgsc.ca	37	3	39431081	39431081	+	Silent	SNP	G	G	A	rs2270770	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC25A38	NM_017875	exon2	c.G165A	p.L55L	.	.	158	5	95	0	G|0.592;A|0.408	90
SLC2A14	144195	ucsc.edu	37	12	7966975	7966975	+	Silent	SNP	C	C	T	rs71436622		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC2A14	NM_153449	exon12	c.G1500A	p.G500G	.	.	138	55	88	18	T|1.000;|0.000	91
SLC2A3	6515	bcgsc.ca	37	12	8078532	8078532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC2A3	NM_006931	exon7	c.T874C	p.S292P	.	.	66	4	65	0	.	94
SLC30A4	7782	bcgsc.ca	37	15	45777422	45777422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC30A4	NM_013309	exon8	c.T1229C	p.L410P	.	.	83	4	61	0	.	90
SLC35F5	80255	bcgsc.ca	37	2	114476780	114476780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC35F5	NM_025181	exon14	c.G1447A	p.G483R	.	.	102	5	51	0	.	90
SLC38A1	81539	bcgsc.ca	37	12	46601402	46601402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC38A1	NM_030674	exon7	c.T391C	p.C131R	.	.	80	4	47	0	.	518
SLC3A1	6519	bcgsc.ca	37	2	44547574	44547574	+	Missense_Mutation	SNP	G	G	A	rs698761	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC3A1	NM_000341	exon10	c.G1854A	p.M618I	.	.	145	5	63	0	G|0.505;A|0.495	90
SLC52A2	79581	ucsc.edu	37	8	145584144	145584144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_024531	exon3	c.T992C	p.V331A	.	.	39	4	24	0	.	.
SLC5A10	125206	bcgsc.ca	37	17	18855611	18855611	+	Silent	SNP	T	T	C	rs2076562	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC5A10	NM_001042450	exon1	c.T93C	p.N31N	.	.	209	6	98	0	T|0.604;C|0.396	91
SLC6A16	28968	bcgsc.ca	37	19	49813687	49813687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC6A16	NM_014037	exon3	c.A496G	p.S166G	.	.	81	4	51	0	.	94
SLC6A17	388662	bcgsc.ca	37	1	110709764	110709764	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC6A17	NM_001010898	exon2	c.G213A	p.L71L	.	.	65	4	35	0	.	92
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17421125	17421125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC7A2	NM_001164771	exon11	c.C1805A	p.P602Q	.	.	343	73	127	0	.	93
SLC7A7	9056	bcgsc.ca	37	14	23243219	23243219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC7A7	NM_001126105	exon10	c.T1352C	p.L451P	.	.	57	4	49	0	.	154
SLCO1B1	10599	bcgsc.ca	37	12	21331549	21331549	+	Missense_Mutation	SNP	T	T	C	rs4149056	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLCO1B1	NM_006446	exon6	c.T521C	p.V174A	.	.	265	12	124	0	T|0.890;C|0.110	97
SLCO1C1	53919	bcgsc.ca	37	12	20903757	20903757	+	Silent	SNP	T	T	C	rs10841611	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLCO1C1	NM_001145946	exon15	c.T1947C	p.H649H	.	.	160	5	94	0	T|0.496;C|0.504	97
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133673915	133673915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLCO2A1	NM_005630	exon4	c.G520A	p.V174M	.	.	131	56	59	0	.	90
SLIT1	6585	bcgsc.ca	37	10	98764535	98764535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLIT1	NM_003061	exon33	c.A3625G	p.N1209D	.	.	79	4	59	0	.	94
SLITRK2	84631	bcgsc.ca	37	X	144904887	144904887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLITRK2	NM_001144005	exon5	c.T944C	p.V315A	.	.	41	4	31	0	.	136
SMAD1	4086	bcgsc.ca	37	4	146467973	146467973	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMAD1	NM_005900	exon5	c.T894C	p.G298G	.	.	136	6	110	0	.	415
SMCHD1	23347	bcgsc.ca	37	18	2740714	2740714	+	Silent	SNP	A	A	G	rs12327477	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMCHD1	NM_015295	exon28	c.A3528G	p.T1176T	.	.	79	4	77	0	A|0.701;G|0.299	46
SMCO2	0	bcgsc.ca	37	12	27628528	27628528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001145010	exon5	c.A376G	p.M126V	.	.	60	4	38	0	.	.
SMCR8	140775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18221376	18221376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMCR8	NM_144775	exon1	c.G2273T	p.G758V	.	.	101	26	53	0	.	91
SMEK1	55671	bcgsc.ca	37	14	91948043	91948043	+	Silent	SNP	T	T	C	rs17127374	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMEK1	NM_032560	exon5	c.A792G	p.T264T	.	.	229	6	140	0	T|0.932;C|0.068	226
SNTB2	6645	bcgsc.ca	37	16	69333628	69333628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SNTB2	NM_006750	exon6	c.A1481G	p.D494G	.	.	79	4	74	0	.	90
SNTN	132203	bcgsc.ca	37	3	63645410	63645410	+	Missense_Mutation	SNP	A	A	G	rs73111385	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SNTN	NM_001080537	exon3	c.A155G	p.K52R	.	.	101	6	88	0	A|0.973;G|0.027	69
SNX19	399979	bcgsc.ca	37	11	130748417	130748417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SNX19	NM_014758	exon11	c.T2879C	p.L960P	.	.	57	4	67	1	.	229
SNX25	83891	bcgsc.ca	37	4	186188300	186188300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SNX25	NM_031953	exon5	c.A590G	p.K197R	.	.	68	4	79	0	.	273
SNX25	83891	bcgsc.ca	37	4	186241928	186241928	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SNX25	NM_031953	exon8	c.A894G	p.R298R	.	.	66	5	77	0	.	273
SORBS1	10580	bcgsc.ca	37	10	97106165	97106165	+	Silent	SNP	T	T	C	rs726176	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SORBS1	NM_001034955	exon24	c.A2493G	p.L831L	.	.	62	4	56	0	A|0.002;C|0.320	155
SORBS1	10580	bcgsc.ca	37	10	97143826	97143826	+	Missense_Mutation	SNP	T	T	C	rs35808802	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SORBS1	NM_001034955	exon15	c.A1520G	p.Y507C	.	.	119	6	84	0	T|0.963;C|0.037	155
SP140	11262	bcgsc.ca	37	2	231118131	231118131	+	Silent	SNP	A	A	G	rs147793905		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SP140	NM_007237	exon11	c.A1158G	p.E386E	.	.	82	4	83	0	A|0.995;G|0.005	90
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4864100	4864100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAG7	NM_004890	exon2	c.A134G	p.K45R	.	.	198	151	136	0	.	91
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	123594436	123594436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAM1	NM_153189	exon3	c.C812T	p.P271L	.	.	107	12	71	0	.	94
SPATA31D5P	347127	ucsc.edu	37	9	84531982	84531982	+	RNA	SNP	G	G	C	rs515389	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	55	31	55	13	G|0.106;C|0.894	.
SPATA31D5P	347127	ucsc.edu	37	9	84531984	84531984	+	RNA	SNP	A	A	C	rs28602355	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	57	32	56	14	A|0.891;C|0.109	.
SPG11	80208	bcgsc.ca	37	15	44888370	44888370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPG11	NM_025137	exon25	c.T4345C	p.S1449P	.	.	86	4	68	0	.	95
SPG11	80208	bcgsc.ca	37	15	44941175	44941175	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPG11	NM_025137	exon7	c.T1491C	p.T497T	.	.	144	5	86	0	.	95
SPG11	80208	bcgsc.ca	37	15	44943848	44943848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPG11	NM_025137	exon6	c.A1297G	p.T433A	.	.	87	4	87	0	.	95
SPIRE2	84501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89924764	89924764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPIRE2	NM_032451	exon8	c.G1121T	p.C374F	.	.	60	24	41	0	.	90
SPOCD1	90853	bcgsc.ca	37	1	32265437	32265437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPOCD1	NM_144569	exon6	c.T1756C	p.S586P	.	.	76	4	49	0	.	158
SPPL3	121665	bcgsc.ca	37	12	121206217	121206217	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_139015	exon8	c.T684C	p.L228L	.	.	59	4	45	0	.	.
SPRR3	6707	hgsc.bcm.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	C	rs17851565	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPRR3	NM_001097589	exon2	c.T243C	p.G81G	.	.	51	10	54	0	A|0.010;C|0.001;T|0.988	45
SPTAN1	6709	bcgsc.ca	37	9	131379967	131379967	+	Silent	SNP	C	C	T	rs2227862	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPTAN1	NM_001130438	exon42	c.C5406T	p.T1802T	.	.	63	5	47	0	A|0.099;C|0.234;G|0.085;N|0.000;T|0.582	158
SPTLC1	10558	bcgsc.ca	37	9	94809459	94809459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPTLC1	NM_006415	exon11	c.A1076G	p.N359S	.	.	81	4	75	0	.	154
SQSTM1	8878	bcgsc.ca	37	5	179250034	179250034	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SQSTM1	NM_003900	exon2	c.C282T	p.I94I	.	.	50	4	48	0	.	92
SREBF2	6721	bcgsc.ca	37	22	42280924	42280924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SREBF2	NM_004599	exon11	c.A2117G	p.E706G	.	.	124	5	77	1	.	154
SRGAP1	57522	bcgsc.ca	37	12	64383769	64383769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRGAP1	NM_020762	exon3	c.G343A	p.A115T	.	.	148	5	92	0	.	653
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64505683	64505683	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRGAP1	NM_020762	exon17	c.C2061T	p.I687I	.	.	150	18	96	0	.	653
SRPX2	27286	bcgsc.ca	37	X	99920609	99920609	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRPX2	NM_014467	exon7	c.C736A	p.R246R	.	.	183	6	80	0	.	132
SRRM1	10250	bcgsc.ca	37	1	24978934	24978934	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRRM1	NM_005839	exon7	c.G735T	p.L245L	.	.	54	5	53	0	.	93
SSPO	23145	bcgsc.ca	37	7	149484578	149484578	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_198455	exon24	c.A3501G	p.T1167T	.	.	72	6	30	0	.	.
SSX2IP	117178	bcgsc.ca	37	1	85113203	85113203	+	Silent	SNP	T	T	C	rs2994949	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SSX2IP	NM_001166417	exon15	c.A1758G	p.A586A	.	.	312	10	125	0	T|0.225;C|0.775	92
SSX7	280658	bcgsc.ca	37	X	52679429	52679429	+	Missense_Mutation	SNP	A	A	G	rs148578012	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SSX7	NM_173358	exon5	c.T304C	p.C102R	.	.	1000	19	178	0	A|0.981;G|0.019	91
ST3GAL3	6487	ucsc.edu;bcgsc.ca	37	1	44363938	44363938	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ST3GAL3	NM_174963	exon8	c.C636A	p.T212T	.	.	39	4	28	0	.	93
STAG1	10274	bcgsc.ca	37	3	136261039	136261039	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STAG1	NM_005862	exon7	c.395-2A>G	.	.	.	60	4	51	0	.	228
STAT5B	6777	bcgsc.ca	37	17	40359647	40359647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STAT5B	NM_012448	exon16	c.T2006C	p.V669A	.	.	205	6	72	0	.	850
STK11IP	114790	bcgsc.ca	37	2	220473355	220473355	+	Missense_Mutation	SNP	G	G	A	rs673951	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STK11IP	NM_052902	exon15	c.G1687A	p.V563I	.	.	193	6	119	0	G|0.640;A|0.360	91
STRC	161497	broad.mit.edu;bcgsc.ca	37	15	43895454	43895454	+	Missense_Mutation	SNP	C	C	T	rs141841779	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STRC	NM_153700	exon23	c.G4531A	p.G1511S	.	.	99	5	67	0	C|1.000;G|0.000	90
STXBP1	6812	bcgsc.ca	37	9	130425526	130425526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	STXBP1	NM_001032221	exon7	c.A472G	p.S158G	.	.	47	4	59	0	.	91
SULT1A2	6799	bcgsc.ca	37	16	28603655	28603655	+	Missense_Mutation	SNP	T	T	G	rs1059491	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SULT1A2	NM_001054	exon7	c.A704C	p.N235T	.	.	381	9	120	0	T|0.704;G|0.296	90
SULT1C4	27233	bcgsc.ca	37	2	108994958	108994958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SULT1C4	NM_006588	exon1	c.A165G	p.K55K	.	.	77	4	52	0	.	22
SUPT20H	55578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37619483	37619483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_017569	exon6	c.G196A	p.E66K	.	.	60	19	67	0	.	.
SV2C	22987	bcgsc.ca	37	5	75581622	75581622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SV2C	NM_014979	exon6	c.A1064G	p.E355G	.	.	98	4	83	0	.	91
SYN2	6854	bcgsc.ca	37	3	12192800	12192800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SYN2	.	.	.	.	.	.	136	5	74	0	.	24
SYNE2	23224	bcgsc.ca	37	14	64496689	64496689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SYNE2	NM_182914	exon44	c.C6791T	p.T2264I	.	.	61	4	82	0	.	164
SYNM	23336	bcgsc.ca	37	15	99670719	99670719	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SYNM	.	.	.	.	.	.	70	4	36	0	.	26
TARS	6897	bcgsc.ca	37	5	33445476	33445476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TARS	NM_152295	exon2	c.A104G	p.N35S	.	.	95	4	69	0	.	92
TAS1R3	83756	bcgsc.ca	37	1	1266738	1266738	+	Missense_Mutation	SNP	G	G	A	rs76755863	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TAS1R3	NM_152228	exon1	c.G13A	p.A5T	.	.	152	7	89	0	G|0.964;A|0.036	22
TAS1R3	83756	bcgsc.ca	37	1	1266740	1266740	+	Silent	SNP	T	T	A	rs141430443	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TAS1R3	NM_152228	exon1	c.T15A	p.A5A	.	.	154	7	87	0	T|0.963;A|0.037	22
TASP1	55617	bcgsc.ca	37	20	13604111	13604111	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TASP1	NM_017714	exon4	c.A264G	p.A88A	.	.	340	8	144	0	.	90
TBCK	93627	bcgsc.ca	37	4	107173072	107173072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TBCK	NM_001163436	exon6	c.C548T	p.P183L	.	.	80	4	89	0	.	336
TBX22	50945	bcgsc.ca	37	X	79281155	79281155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TBX22	NM_016954	exon4	c.G512A	p.C171Y	.	.	64	4	38	0	.	628
TCEAL3	85012	mdanderson.org	37	X	102864334	102864334	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCEAL3	NM_001006933	exon3	c.G342A	p.T114T	.	.	384	40	105	0	.	90
TCF12	6938	bcgsc.ca	37	15	57356004	57356004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF12	NM_207036	exon4	c.T205C	p.S69P	.	.	79	4	78	0	.	1085
TCF20	6942	bcgsc.ca	37	22	42607482	42607482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF20	NM_181492	exon1	c.G3830T	p.S1277I	.	.	79	4	71	0	.	95
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42607990	42607990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF20	NM_181492	exon1	c.G3322C	p.V1108L	.	.	52	7	38	0	.	95
TCF4	6925	ucsc.edu;bcgsc.ca	37	18	52895531	52895531	+	Silent	SNP	T	T	C	rs8766	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF4	NM_001243226	exon20	c.A2247G	p.S749S	.	.	57	6	39	0	T|0.626;C|0.374	523
TCHH	7062	bcgsc.ca	37	1	152083665	152083665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCHH	NM_007113	exon3	c.T2028G	p.H676Q	.	.	209	13	82	0	.	72
TCP10	6953	ucsc.edu	37	6	167786750	167786750	+	Missense_Mutation	SNP	C	C	A	rs3010584	by2hit2allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCP10	NM_004610	exon8	c.G888T	p.K296N	.	.	83	30	61	7	.	89
TDRD1	56165	ucsc.edu;bcgsc.ca	37	10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD1	NM_198795	exon26	c.A3541G	p.T1181A	.	.	41	4	58	1	.	90
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179631316	179631316	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD5	NM_001199085	exon15	c.T2400A	p.P800P	.	.	76	43	36	0	.	94
TENM4	26011	bcgsc.ca	37	11	78383336	78383336	+	Silent	SNP	G	G	A	rs111604043	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001098816	exon31	c.C5535T	p.R1845R	.	.	95	7	96	0	G|0.984;A|0.016	.
TERF2	7014	bcgsc.ca	37	16	69418527	69418527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TERF2	NM_005652	exon3	c.A562G	p.T188A	.	.	52	4	71	0	.	227
TET2	54790	bcgsc.ca	37	4	106155403	106155403	+	Missense_Mutation	SNP	T	T	C	rs112510990		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TET2	NM_001127208	exon3	c.T304C	p.S102P	.	.	49	4	57	0	T|0.500;C|0.500	4618
TEX11	56159	bcgsc.ca	37	X	70080705	70080705	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TEX11	NM_031276	exon6	c.324+2T>C	.	.	.	151	6	56	0	.	178
TFDP2	7029	hgsc.bcm.edu	37	3	141692947	141692947	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TFDP2	NM_001178139	exon8	c.606delA	p.K202fs	.	.	366	15	136	4	.	226
TG	7038	bcgsc.ca	37	8	133894203	133894203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TG	NM_003235	exon6	c.T734C	p.L245P	.	.	91	6	44	0	.	145
TGFBRAP1	9392	bcgsc.ca	37	2	105897003	105897003	+	Silent	SNP	G	G	A	rs2241799	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TGFBRAP1	NM_004257	exon6	c.C1299T	p.N433N	.	.	222	9	105	0	G|0.853;A|0.147	91
THADA	63892	bcgsc.ca	37	2	43755029	43755029	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	THADA	NM_001083953	exon22	c.A3363C	p.E1121D	.	.	199	6	92	0	.	228
THADA	63892	bcgsc.ca	37	2	43814131	43814131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	THADA	NM_001083953	exon5	c.A313G	p.S105G	.	.	89	4	58	0	.	228
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137928455	137928455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	THSD7B	.	.	.	.	.	.	136	27	63	0	.	75
TLK1	9874	bcgsc.ca	37	2	171863033	171863033	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TLK1	NM_012290	exon17	c.A1719G	p.R573R	.	.	157	5	96	0	.	439
TLR3	7098	bcgsc.ca	37	4	187004217	187004217	+	Silent	SNP	C	C	T	rs3775290	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TLR3	NM_003265	exon4	c.C1377T	p.F459F	.	.	96	4	100	1	C|0.727;T|0.273	524
TLR7	51284	ucsc.edu;bcgsc.ca	37	X	12903659	12903659	+	Missense_Mutation	SNP	A	A	T	rs179008	bycluster;byfrequency;by1000genomes	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TLR7	NM_016562	exon3	c.A32T	p.Q11L	.	.	85	8	85	0	0|0.021;A|0.822;T|0.157	564
TM9SF3	56889	bcgsc.ca	37	10	98292857	98292857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TM9SF3	NM_020123	exon10	c.T1276C	p.F426L	.	.	77	6	72	0	.	90
TMCO5A	145942	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38229051	38229051	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMCO5A	NM_152453	exon3	c.G144A	p.L48L	.	.	21	5	15	0	.	514
TMED4	222068	ucsc.edu	37	7	44621056	44621056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMED4	NM_182547	exon3	c.G379A	p.G127S	.	.	36	4	19	0	.	90
TMEM123	114908	bcgsc.ca	37	11	102272839	102272839	+	Missense_Mutation	SNP	C	C	A	rs11547915	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM123	NM_052932	exon3	c.G256T	p.V86F	.	.	493	13	181	0	C|0.963;A|0.037	135
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	129028648	129028648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM132C	NM_001136103	exon3	c.G1121A	p.R374K	.	.	25	15	16	0	.	68
TMEM177	80775	bcgsc.ca	37	2	120438515	120438515	+	Missense_Mutation	SNP	G	G	C	rs11684353	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM177	NM_030577	exon2	c.G86C	p.G29A	.	.	90	5	48	0	C|0.155;G|0.845;T|0.000	91
TMEM2	23670	bcgsc.ca	37	9	74329998	74329998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM2	NM_013390	exon15	c.A2443G	p.S815G	.	.	79	4	68	0	.	92
TMEM229B	161145	bcgsc.ca	37	14	67940374	67940374	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM229B	NM_182526	exon3	c.C267T	p.F89F	.	.	47	4	38	0	.	90
TMEM41B	440026	bcgsc.ca	37	11	9321173	9321173	+	Missense_Mutation	SNP	A	A	G	rs77852767	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM41B	NM_015012	exon2	c.T197C	p.F66S	.	.	154	5	101	0	A|0.991;G|0.009	90
TMEM74	157753	hgsc.bcm.edu	37	8	109796875	109796876	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM74	NM_153015	exon2	c.453_454insC	p.A151fs	.	.	200	16	82	0	.	228
TMPRSS11A	339967	bcgsc.ca	37	4	68810246	68810246	+	Silent	SNP	G	G	A	rs1370840	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMPRSS11A	NM_001114387	exon3	c.C243T	p.T81T	.	.	170	8	91	0	G|0.709;A|0.291	69
TMPRSS13	84000	bcgsc.ca	37	11	117774394	117774394	+	Silent	SNP	A	A	G	rs59590191	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMPRSS13	NM_001077263	exon12	c.T1653C	p.L551L	.	.	59	5	54	0	A|0.831;G|0.169	91
TMTC2	160335	bcgsc.ca	37	12	83444775	83444775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMTC2	NM_152588	exon10	c.T2245C	p.F749L	.	.	235	6	122	1	.	92
TMTC4	84899	bcgsc.ca	37	13	101320877	101320877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMTC4	NM_032813	exon3	c.G175A	p.G59R	.	.	89	4	68	0	.	155
TNC	3371	ucsc.edu;bcgsc.ca	37	9	117848511	117848511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TNC	NM_002160	exon3	c.A1499G	p.Q500R	.	.	43	4	34	0	.	517
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25665077	25665077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP2B	NM_001068	exon21	c.C2641T	p.P881S	.	.	277	65	135	0	.	273
TOP3A	7156	bcgsc.ca	37	17	18205989	18205989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP3A	NM_004618	exon6	c.C548T	p.P183L	.	.	75	4	33	0	.	228
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18188782	18188782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP3A	NM_004618	exon14	c.C1650T	p.Y550Y	.	.	169	82	63	0	.	228
TOPORS	10210	bcgsc.ca	37	9	32542278	32542278	+	Missense_Mutation	SNP	T	T	C	rs17857515	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOPORS	NM_005802	exon3	c.A2245G	p.N749D	.	.	207	7	123	0	T|0.984;C|0.016	230
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7578454	7578455	+	In_Frame_Ins	INS	-	-	CGCGGA	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	TP53,NS,carcinoma,-1	TP53	NM_001126112	exon5	c.476_477insTCCGCG	p.A159delinsVRA	.	.	32	13	32	0	.	70225
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18050909	18050909	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TPH1	NM_004179	exon6	c.471-1G>C	.	.	.	63	17	60	0	.	90
TPM2	7169	bcgsc.ca	37	9	35685502	35685502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TPM2	NM_213674	exon4	c.A421G	p.M141V	.	.	156	5	83	0	.	515
TPTE2P6	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	C	G	rs3874227	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	184	15	121	0	C|0.917;G|0.083	.
TRAK1	22906	bcgsc.ca	37	3	42251409	42251409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRAK1	NM_001265608	exon14	c.A1895G	p.D632G	.	.	99	5	49	0	.	91
TRAPPC3	27095	bcgsc.ca	37	1	36603531	36603531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRAPPC3	NM_001270894	exon4	c.A313G	p.S105G	.	.	59	4	40	0	.	90
TRIM51HP	440041	bcgsc.ca	37	11	55064966	55064966	+	RNA	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	314	8	150	1	.	.
TRIM66	9866	bcgsc.ca	37	11	8671369	8671369	+	Silent	SNP	C	C	T	rs10840101	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRIM66	NM_014818	exon3	c.G75A	p.L25L	.	.	71	4	46	0	C|0.817;T|0.183	68
TRIP12	9320	bcgsc.ca	37	2	230633393	230633393	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRIP12	NM_004238	exon40	c.T5721C	p.D1907D	.	.	69	5	56	0	.	572
TRMT11	60487	bcgsc.ca	37	6	126320618	126320618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRMT11	NM_001031712	exon7	c.A538G	p.R180G	.	.	199	6	124	1	.	91
TRPM1	4308	bcgsc.ca	37	15	31369123	31369123	+	Missense_Mutation	SNP	A	A	G	rs4779816	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRPM1	NM_001252020	exon2	c.T119C	p.M40T	.	.	111	9	87	0	A|0.119;G|0.881	94
TRPM7	54822	bcgsc.ca	37	15	50935620	50935620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TRPM7	NM_017672	exon5	c.G452T	p.R151L	.	.	91	4	69	0	.	392
TSC2	7249	bcgsc.ca	37	16	2107178	2107178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TSC2	NM_001114382	exon9	c.A847G	p.R283G	.	.	155	5	52	0	.	1908
TSEN34	79042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54695669	54695669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TSEN34	NM_024075	exon3	c.A341G	p.E114G	.	.	46	10	30	0	.	90
TSHR	7253	bcgsc.ca	37	14	81609497	81609497	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TSHR	NM_000369	exon10	c.T1095C	p.G365G	.	.	81	4	89	0	.	1650
TTC21B	79809	bcgsc.ca	37	2	166747413	166747413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTC21B	NM_024753	exon23	c.T3036C	p.A1012A	.	.	213	6	126	0	.	94
TTC28	23331	broad.mit.edu;bcgsc.ca	37	22	28501558	28501558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001145418	exon8	c.G3016A	p.V1006I	.	.	125	6	90	0	.	.
TTC37	9652	hgsc.bcm.edu	37	5	94852382	94852388	+	Frame_Shift_Del	DEL	AACATGC	AACATGC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	AACATGC	AACATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTC37	NM_014639	exon23	c.2503_2509del	p.835_837del	.	.	119	44	78	0	.	94
TTC38	55020	bcgsc.ca	37	22	46685322	46685322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTC38	NM_017931	exon12	c.A1106G	p.H369R	.	.	56	4	36	1	.	91
TTC40	54777	bcgsc.ca	37	10	134674386	134674386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001200049	exon36	c.A4991G	p.Q1664R	.	.	71	4	67	0	.	.
TTLL3	26140	bcgsc.ca	37	3	9870857	9870857	+	Silent	SNP	G	G	A	rs2290303	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTLL3	NM_001025930	exon10	c.G1761A	p.Q587Q	.	.	91	4	54	0	G|0.623;A|0.377	585
TTLL6	284076	bcgsc.ca	37	17	46874471	46874471	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTLL6	NM_001130918	exon7	c.G864A	p.L288L	.	.	103	6	52	0	.	90
TTN	7273	bcgsc.ca	37	2	179644855	179644855	+	Missense_Mutation	SNP	T	T	C	rs10497520	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon22	c.A3601G	p.K1201E	.	.	344	10	138	0	T|0.445;C|0.555	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179588199	179588199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon74	c.G21628A	p.V7210M	.	.	118	38	93	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179638382	179638382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon32	c.G7401T	p.K2467N	.	.	263	15	126	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179659228	179659228	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon8	c.C1296G	p.A432A	.	.	100	38	71	0	.	636
TUBA3D	113457	bcgsc.ca	37	2	132238064	132238064	+	Silent	SNP	C	C	T	rs144693747	byfrequency;alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TUBA3D	NM_080386	exon4	c.C798T	p.H266H	.	.	147	7	74	0	C|1.000;G|0.000	44
TUBA3D	113457	ucsc.edu	37	2	132238082	132238082	+	Silent	SNP	T	T	C	rs2463338		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TUBA3D	NM_080386	exon4	c.T816C	p.Y272Y	.	.	148	32	71	10	.	44
TUBA3E	112714	ucsc.edu	37	2	130949553	130949553	+	Missense_Mutation	SNP	A	A	G	rs1052422	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TUBA3E	NM_207312	exon5	c.T1204C	p.W402R	.	.	92	38	58	16	A|0.657;G|0.343	69
TUBA3E	112714	ucsc.edu	37	2	130951638	130951638	+	Silent	SNP	G	G	T	rs141240951	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TUBA3E	NM_207312	exon4	c.C777A	p.L259L	.	.	257	70	105	22	G|0.995;T|0.005	69
TUBA3E	112714	ucsc.edu	37	2	130951848	130951848	+	Silent	SNP	T	T	C	rs62165073	bycluster;byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TUBA3E	NM_207312	exon4	c.A567G	p.L189L	.	.	245	55	100	4	T|0.375;C|0.625	69
TUBB4B	10383	bcgsc.ca	37	9	140137006	140137006	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_006088	exon4	c.G336A	p.L112L	.	.	84	4	83	0	.	.
TUBBP5	643224	bcgsc.ca	37	9	141071478	141071478	+	RNA	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	139	17	89	0	.	.
TVP23C	201158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15449210	15449210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_145301	exon5	c.A351C	p.K117N	.	.	266	99	114	0	.	.
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41854881	41854881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TYRO3	NM_006293	exon4	c.G545A	p.G182E	.	.	47	31	42	0	.	1388
TYW1	55253	ucsc.edu	37	7	66660242	66660242	+	Missense_Mutation	SNP	A	A	G	rs71563185		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TYW1	NM_018264	exon15	c.A1895G	p.H632R	.	.	109	38	67	12	A|0.500;G|0.500	91
UACA	55075	bcgsc.ca	37	15	70960068	70960068	+	Silent	SNP	G	G	A	rs934005	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UACA	NM_018003	exon16	c.C2955T	p.Y985Y	.	.	313	9	149	0	G|0.383;A|0.617	94
UBAP2	55833	bcgsc.ca	37	9	34017106	34017106	+	Missense_Mutation	SNP	C	C	T	rs1785506	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UBAP2	NM_018449	exon2	c.G41A	p.R14Q	.	.	143	5	81	0	C|0.374;T|0.626	94
UBB	7314	bcgsc.ca	37	17	16285548	16285548	+	Silent	SNP	A	A	G	rs1060199		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UBB	NM_018955	exon2	c.A327G	p.K109K	.	.	265	12	116	0	A|1.000;|0.000	47
UBE2Q1	55585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154527970	154527970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UBE2Q1	NM_017582	exon3	c.T471G	p.C157W	.	.	126	50	66	0	.	226
UBE3D	90025	bcgsc.ca	37	6	83748197	83748197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_198920	exon5	c.A605G	p.K202R	.	.	78	4	60	0	.	.
UGT1A7	54577	bcgsc.ca	37	2	234590616	234590616	+	Silent	SNP	C	C	A	rs7577677	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UGT1A7	NM_019077	exon1	c.C33A	p.P11P	.	.	176	7	84	0	C|0.686;A|0.314	26
UGT2B10	7365	bcgsc.ca	37	4	69870721	69870721	+	RNA	SNP	A	A	G	rs111542944	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UGT2B10	.	.	.	.	.	.	199	6	131	0	A|0.782;G|0.218	65
ULBP1	80329	bcgsc.ca	37	6	150290358	150290358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ULBP1	NM_025218	exon3	c.C487A	p.P163T	.	.	95	5	70	0	.	91
UMODL1	89766	bcgsc.ca	37	21	43510427	43510427	+	Silent	SNP	T	T	C	rs67055914	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UMODL1	NM_173568	exon6	c.T810C	p.Y270Y	.	.	106	5	91	0	T|0.747;C|0.253	93
UNC5CL	222643	ucsc.edu	37	6	41001632	41001632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UNC5CL	NM_173561	exon3	c.T674C	p.L225P	.	.	46	5	20	1	.	92
UNC5D	137970	bcgsc.ca	37	8	35579730	35579730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UNC5D	NM_080872	exon9	c.A1120G	p.I374V	.	.	88	4	65	0	.	96
UQCRFS1	7386	ucsc.edu	37	19	29699033	29699033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UQCRFS1	NM_006003	exon2	c.A247G	p.I83V	.	.	30	10	36	2	.	226
USH2A	7399	hgsc.bcm.edu;broad.mit.edu	37	1	216369968	216369974	+	Frame_Shift_Del	DEL	TTTCCTC	TTTCCTC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TTTCCTC	TTTCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USH2A	NM_007123	exon19	c.4172_4178del	p.1391_1393del	.	.	465	7	125	0	.	115
USP17L2	377630	ucsc.edu	37	8	11996074	11996074	+	Missense_Mutation	SNP	T	T	C	rs142023572	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USP17L2	NM_201402	exon1	c.A196G	p.K66E	.	.	138	40	56	6	T|0.955;C|0.045	435
USP22	23326	bcgsc.ca	37	17	20911204	20911204	+	Silent	SNP	G	G	T	rs11541311	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USP22	NM_015276	exon9	c.C1209A	p.I403I	.	.	92	5	48	0	G|0.838;T|0.162	636
USP24	23358	bcgsc.ca	37	1	55603319	55603319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USP24	NM_015306	exon28	c.T3070C	p.F1024L	.	.	63	4	52	0	.	521
USP31	57478	bcgsc.ca	37	16	23113771	23113771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USP31	NM_020718	exon6	c.A1103G	p.E368G	.	.	59	4	31	0	.	663
USP53	54532	bcgsc.ca	37	4	120181724	120181724	+	Silent	SNP	A	A	G	rs35372126	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USP53	NM_019050	exon10	c.A738G	p.T246T	.	.	145	8	113	0	A|0.753;G|0.247	660
USP54	159195	bcgsc.ca	37	10	75276970	75276970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	USP54	NM_152586	exon18	c.T3214C	p.C1072R	.	.	71	4	50	0	.	721
UTP11L	51118	bcgsc.ca	37	1	38484957	38484957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UTP11L	NM_016037	exon6	c.A469G	p.T157A	.	.	62	4	62	0	.	90
UTP20	27340	bcgsc.ca	37	12	101739446	101739446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UTP20	NM_014503	exon37	c.T4720C	p.F1574L	.	.	198	6	114	0	.	155
UVRAG	7405	bcgsc.ca	37	11	75590972	75590972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UVRAG	NM_003369	exon4	c.A320G	p.D107G	.	.	210	6	122	0	.	229
VCAN	1462	bcgsc.ca	37	5	82816401	82816401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	VCAN	NM_004385	exon7	c.A2276G	p.E759G	.	.	73	4	68	0	.	238
VNN2	8875	broad.mit.edu	37	6	133078572	133078572	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	VNN2	NM_004665	exon2	c.G327A	p.P109P	.	.	35	3	32	0	.	90
VPS8	23355	bcgsc.ca	37	3	184633247	184633247	+	Silent	SNP	A	A	C	rs4686879	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	VPS8	NM_001009921	exon27	c.A2367C	p.L789L	.	.	153	9	107	0	A|0.516;C|0.484	91
VSIG1	340547	bcgsc.ca	37	X	107316004	107316004	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	VSIG1	NM_001170553	exon5	c.T618C	p.P206P	.	.	90	4	53	0	.	132
VSX2	338917	bcgsc.ca	37	14	74711883	74711883	+	Silent	SNP	C	C	T	rs35435463	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	VSX2	NM_182894	exon3	c.C471T	p.S157S	.	.	53	4	38	0	C|0.634;T|0.366	69
WDR38	401551	bcgsc.ca	37	9	127618589	127618589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR38	NM_001045476	exon5	c.T476C	p.V159A	.	.	69	4	52	1	.	22
WDR63	126820	bcgsc.ca	37	1	85555893	85555893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR63	NM_145172	exon8	c.T835C	p.F279L	.	.	230	6	125	1	.	95
WDR72	256764	bcgsc.ca	37	15	53907948	53907948	+	Missense_Mutation	SNP	G	G	A	rs17730281	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR72	NM_182758	exon15	c.C2455T	p.L819F	.	.	87	4	87	0	G|0.773;A|0.227	92
WDR72	256764	bcgsc.ca	37	15	54003091	54003091	+	Missense_Mutation	SNP	G	G	A	rs551225	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR72	NM_182758	exon9	c.C917T	p.P306L	.	.	84	4	50	0	G|0.619;A|0.381	92
WDR7	23335	ucsc.edu;bcgsc.ca	37	18	54483320	54483320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WDR7	NM_015285	exon20	c.T3249C	p.P1083P	.	.	39	4	55	0	.	93
WIF1	11197	bcgsc.ca	37	12	65471561	65471561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WIF1	NM_007191	exon3	c.T362C	p.V121A	.	.	104	5	71	0	.	1110
WNK3	65267	bcgsc.ca	37	X	54328230	54328230	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WNK3	NM_001002838	exon6	c.A1152G	p.G384G	.	.	88	5	53	0	.	441
WWC3	55841	bcgsc.ca	37	X	10094291	10094291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	WWC3	NM_015691	exon15	c.A2051G	p.K684R	.	.	46	4	52	1	.	134
XAB2	56949	bcgsc.ca	37	19	7687245	7687245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	XAB2	NM_020196	exon12	c.A1589G	p.E530G	.	.	116	5	77	0	.	272
XCR1	2829	bcgsc.ca	37	3	46063280	46063280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	XCR1	NM_001024644	exon2	c.T160C	p.W54R	.	.	79	4	65	0	.	523
XIRP2	129446	bcgsc.ca	37	2	168103881	168103881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	XIRP2	NM_152381	exon9	c.A5979G	p.G1993G	.	.	82	4	76	0	.	104
XPO1	7514	bcgsc.ca	37	2	61721198	61721198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	XPO1	NM_003400	exon12	c.A1076G	p.E359G	.	.	89	4	42	0	.	229
XPO7	23039	bcgsc.ca	37	8	21844654	21844654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	XPO7	NM_015024	exon14	c.T1580C	p.V527A	.	.	119	5	82	0	.	273
ZAN	7455	bcgsc.ca	37	7	100386948	100386948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZAN	.	.	.	.	.	.	70	4	34	0	.	142
ZBBX	79740	bcgsc.ca	37	3	167000256	167000256	+	Missense_Mutation	SNP	G	G	C	rs12638625	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZBBX	NM_001199201	exon20	c.C2024G	p.A675G	.	.	155	6	98	0	G|0.623;C|0.377	92
ZBTB26	57684	bcgsc.ca	37	9	125681221	125681221	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZBTB26	NM_020924	exon2	c.T993C	p.C331C	.	.	57	5	72	0	.	90
ZBTB41	360023	bcgsc.ca	37	1	197147557	197147557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZBTB41	NM_194314	exon6	c.A1762G	p.S588G	.	.	61	5	37	0	.	92
ZC3H3	23144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144550407	144550407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZC3H3	NM_015117	exon8	c.C2147A	p.P716H	.	.	58	20	24	0	.	91
ZFAND4	93550	bcgsc.ca	37	10	46121561	46121561	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001128324	exon7	c.T1710C	p.L570L	.	.	73	4	65	0	.	.
ZFC3H1	196441	bcgsc.ca	37	12	72013832	72013832	+	Silent	SNP	A	A	G	rs1298463	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZFC3H1	NM_144982	exon26	c.T4923C	p.A1641A	.	.	173	5	88	0	A|0.441;C|0.004	138
ZFHX4	79776	bcgsc.ca	37	8	77766634	77766634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZFHX4	NM_024721	exon10	c.T7477C	p.Y2493H	.	.	71	4	45	0	.	98
ZFP57	346171	bcgsc.ca	37	6	29641104	29641104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZFP57	NM_001109809	exon4	c.T784C	p.S262P	.	.	200	7	77	0	.	5
ZFYVE20	64145	bcgsc.ca	37	3	15115436	15115436	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZFYVE20	NM_022340	exon14	c.A2208G	p.E736E	.	.	122	6	69	0	.	92
ZMYM2	7750	bcgsc.ca	37	13	20635297	20635297	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM2	NM_001190964	exon18	c.A2844G	p.T948T	.	.	92	4	77	0	.	685
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	35852772	35852772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM4	NM_005095	exon12	c.C2005T	p.L669F	.	.	87	8	68	0	.	291
ZMYM5	9205	bcgsc.ca	37	13	20425911	20425911	+	Missense_Mutation	SNP	C	C	A	rs9579717	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM5	NM_001039650	exon3	c.G410T	p.C137F	.	.	237	7	142	0	C|0.902;A|0.098	90
ZMYM5	9205	bcgsc.ca	37	13	20425948	20425948	+	Missense_Mutation	SNP	T	T	C	rs9579718	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM5	NM_001039650	exon3	c.A373G	p.I125V	.	.	216	7	135	0	T|0.901;C|0.099	90
ZNF211	10520	bcgsc.ca	37	19	58153081	58153081	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF211	NM_001265597	exon5	c.C1422T	p.S474S	.	.	81	4	62	0	.	92
ZNF214	7761	bcgsc.ca	37	11	7022717	7022717	+	Missense_Mutation	SNP	T	T	C	rs1156526	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF214	NM_013249	exon3	c.A197G	p.Y66C	.	.	73	4	73	0	C|0.558;N|0.000	91
ZNF222	7673	bcgsc.ca	37	19	44535999	44535999	+	Missense_Mutation	SNP	G	G	T	rs7258517	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF222	NM_001129996	exon4	c.G292T	p.V98F	.	.	217	9	137	0	G|0.510;T|0.490	93
ZNF226	7769	bcgsc.ca	37	19	44680812	44680812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001032372	exon6	c.A1397G	p.Q466R	.	.	91	4	72	0	.	.
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44739856	44739856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF227	NM_182490	exon6	c.A1273T	p.I425F	.	.	46	11	40	0	.	91
ZNF230	7773	bcgsc.ca	37	19	44515014	44515014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF230	NM_006300	exon5	c.A823G	p.T275A	.	.	64	4	67	0	.	90
ZNF267	10308	bcgsc.ca	37	16	31896519	31896519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF267	NM_003414	exon3	c.G168T	p.L56F	.	.	83	4	51	0	.	138
ZNF271	10778	bcgsc.ca	37	18	32888546	32888546	+	RNA	SNP	C	C	A	rs34841246	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF271	.	.	.	.	.	.	68	5	74	0	C|0.757;A|0.243	90
ZNF285	26974	bcgsc.ca	37	19	44890685	44890685	+	Silent	SNP	T	T	G	rs73039936	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF285	NM_152354	exon4	c.A1722C	p.G574G	.	.	167	13	109	3	T|0.913;G|0.087	94
ZNF286A	57335	ucsc.edu	37	17	15620481	15620481	+	Silent	SNP	C	C	T	rs74608540		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF286A	NM_020652	exon6	c.C1443T	p.L481L	.	.	204	59	107	21	C|0.250;T|0.750	90
ZNF302	55900	ucsc.edu	37	19	35175592	35175592	+	Missense_Mutation	SNP	G	G	A	rs78654759		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_018443	exon5	c.G650A	p.S217N	.	.	59	34	62	7	G|0.500;A|0.500	.
ZNF354A	6940	broad.mit.edu;bcgsc.ca	37	5	178140116	178140116	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF354A	NM_005649	exon5	c.763delT	p.S255fs	.	.	73	10	90	0	.	93
ZNF354A	6940	broad.mit.edu;bcgsc.ca	37	5	178140121	178140122	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF354A	NM_005649	exon5	c.758_759insC	p.Q253fs	.	.	74	10	89	0	.	93
ZNF451	26036	bcgsc.ca	37	6	56966012	56966012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF451	NM_001257273	exon4	c.A798G	p.E266E	.	.	97	4	47	0	.	93
ZNF461	92283	bcgsc.ca	37	19	37129806	37129806	+	Missense_Mutation	SNP	G	G	A	rs61746529	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_153257	exon6	c.C1441T	p.H481Y	.	.	78	4	79	0	G|0.967;A|0.033	.
ZNF487P	642819	bcgsc.ca	37	10	43978087	43978087	+	Silent	SNP	A	A	G	rs3750890	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	15	4	25	0	A|0.488;G|0.511	.
ZNF500	26048	hgsc.bcm.edu	37	16	4815691	4815705	+	In_Frame_Del	DEL	GCTCCAGCACCAGCA	GCTCCAGCACCAGCA	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GCTCCAGCACCAGCA	GCTCCAGCACCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF500	NM_021646	exon2	c.275_289del	p.92_97del	.	.	83	30	21	0	.	93
ZNF519	162655	bcgsc.ca	37	18	14105589	14105589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF519	NM_145287	exon3	c.A950G	p.E317G	.	.	75	4	62	0	.	90
ZNF528	84436	bcgsc.ca	37	19	52919446	52919446	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF528	NM_032423	exon7	c.A1341G	p.R447R	.	.	70	4	61	0	.	92
ZNF546	339327	bcgsc.ca	37	19	40520119	40520119	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF546	NM_178544	exon7	c.A942G	p.R314R	.	.	86	4	70	0	.	155
ZNF562	54811	bcgsc.ca	37	19	9764305	9764305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF562	NM_001130032	exon6	c.A601G	p.R201G	.	.	85	4	119	0	.	90
ZNF565	147929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36692951	36692951	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF565	.	.	.	.	.	.	69	14	60	0	.	92
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014087	53014087	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001099694	exon6	c.T453A	p.P151P	.	.	168	50	121	0	.	.
ZNF585B	92285	bcgsc.ca	37	19	37676528	37676528	+	Silent	SNP	G	G	A	rs8111369	bycluster;by2hit2allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF585B	NM_152279	exon5	c.C1911T	p.A637A	.	.	159	6	106	0	G|0.500;A|0.500	91
ZNF654	55279	bcgsc.ca	37	3	88189153	88189153	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF654	NM_018293	exon1	c.A693G	p.R231R	.	.	94	4	70	0	.	69
ZNF705A	440077	ucsc.edu	37	12	8329833	8329833	+	Missense_Mutation	SNP	G	G	A	rs11043758	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF705A	NM_001004328	exon5	c.G557A	p.R186H	.	.	128	63	79	11	G|0.506;A|0.494	90
ZNF711	7552	bcgsc.ca	37	X	84510590	84510590	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF711	NM_021998	exon4	c.T405C	p.T135T	.	.	59	4	45	0	.	134
ZNF729	100287226	bcgsc.ca	37	19	22486565	22486565	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF729	NM_001242680	exon2	c.A36G	p.P12P	.	.	90	4	70	0	.	24
ZNF77	58492	bcgsc.ca	37	19	2934173	2934173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF77	NM_021217	exon4	c.C952A	p.H318N	.	.	72	4	74	0	.	91
ZNF781	163115	bcgsc.ca	37	19	38160507	38160507	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF781	NM_152605	exon4	c.T543C	p.H181H	.	.	47	4	55	0	.	90
ZNF800	168850	bcgsc.ca	37	7	127026131	127026131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF800	NM_176814	exon3	c.T140C	p.I47T	.	.	95	4	62	0	.	23
ZNF843	283933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31448157	31448157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF843	NM_001136509	exon2	c.C14T	p.P5L	.	.	41	10	15	0	.	68
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53854648	53854648	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_138374	exon4	c.G720A	p.A240A	.	.	149	8	110	0	.	.
ZNRD1	30834	bcgsc.ca	37	6	30029715	30029715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNRD1	NM_170783	exon2	c.A167G	p.K56R	.	.	188	7	81	0	.	90
ZP2	7783	bcgsc.ca	37	16	21217061	21217061	+	Silent	SNP	G	G	A	rs16971234	byfrequency	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZP2	NM_003460	exon6	c.C519T	p.D173D	.	.	197	9	89	0	G|0.763;A|0.237	91
ZP4	57829	bcgsc.ca	37	1	238050120	238050120	+	Missense_Mutation	SNP	C	C	T	rs141717126		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZP4	NM_021186	exon6	c.G790A	p.D264N	.	.	84	4	63	0	C|1.000;T|0.000	93
ZSCAN23	222696	bcgsc.ca	37	6	28402844	28402844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZSCAN23	NM_001012455	exon4	c.G568A	p.G190R	.	.	88	4	43	0	.	68
ZSWIM4	65249	broad.mit.edu	37	19	13920011	13920011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZSWIM4	NM_023072	exon5	c.G989T	p.C330F	.	.	9	4	13	0	.	90
ZW10	9183	bcgsc.ca	37	11	113612429	113612429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZW10	NM_004724	exon11	c.C1570T	p.P524S	.	.	80	4	74	0	.	228
OR5L2	26338	ucsc.edu	37	11	55595017	55595018	+	Missense_Mutation	DNP	GA	GA	TG	rs34954823	byCluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	p.G108V	.	.	.	.	.	.	.	
MUC6	4588	bcgsc.ca	37	11	1016800	1016801	+	Missense_Mutation	DNP	GG	GG	AC	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	p.HP2000QS	.	.	.	.	.	.	.	
SELPLG	6404	ucsc.edu;bcgsc.ca	37	12	109017672	109017673	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	p.P154A	.	.	.	.	.	.	.	
IGHV3-22	28443	bcgsc.ca	37	14	106714789	106714790	+	RNA	DNP	GG	GG	CA	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	.	.	.	.	.	
LILRP1	79167	bcgsc.ca	37	19	55209630	55209631	+	RNA	DNP	GG	GG	CC	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	.	.	.	.	.	
CTD-2089O24.1	0	bcgsc.ca	37	5	110284399	110284400	+	RNA	DNP	CT	CT	TC	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	.	.	.	.	.	.	.	.	.	.	.	
