Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A4GALT	53947	bcgsc.ca	37	22	43089065	43089065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	A4GALT	NM_017436	exon3	c.A893G	p.D298G	.	.	53	4	84	1	.	90
ACTRT1	139741	bcgsc.ca	37	X	127186178	127186178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ACTRT1	NM_138289	exon1	c.A8G	p.N3S	.	.	92	5	192	0	.	133
ADAMTS12	81792	bcgsc.ca	37	5	33881394	33881394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ADAMTS12	NM_030955	exon2	c.A319G	p.T107A	.	.	87	4	190	0	.	232
ADRA2A	150	bcgsc.ca	37	10	112839007	112839007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ADRA2A	NM_000681	exon1	c.T1253C	p.V418A	.	.	100	5	210	2	.	90
AGAP6	414189	bcgsc.ca	37	10	51768490	51768490	+	Missense_Mutation	SNP	T	T	C	rs75945094		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AGAP6	NM_001077665	exon8	c.T605C	p.M202T	.	.	147	11	799	1	T|0.500;C|0.500	1
AGAP6	414189	bcgsc.ca	37	10	51768497	51768497	+	Missense_Mutation	SNP	A	A	C	rs79639281		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AGAP6	NM_001077665	exon8	c.A612C	p.K204N	.	.	142	10	768	1	C|1.000;|0.000	1
AKAP9	10142	bcgsc.ca	37	7	91630916	91630916	+	Missense_Mutation	SNP	A	A	G	rs145033147	byfrequency	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AKAP9	NM_005751	exon8	c.A1685G	p.H562R	.	.	77	4	133	0	A|1.000;G|0.000	755
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116152930	116152930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ALAD	NM_000031	exon6	c.C424T	p.R142W	.	.	15	9	37	0	.	90
ANGPTL4	51129	bcgsc.ca	37	19	8436401	8436401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ANGPTL4	NM_139314	exon6	c.T1034C	p.L345P	.	.	57	5	70	0	.	91
ANKRD20A5P	440482	broad.mit.edu	37	18	14184212	14184212	+	RNA	SNP	A	A	T	rs76531602	byfrequency	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ANKRD20A5P	.	.	.	.	.	.	20	4	47	0	A|0.500;T|0.500	90
AP1G2	8906	bcgsc.ca	37	14	24029212	24029212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AP1G2	NM_003917	exon21	c.A2191G	p.N731D	.	.	32	3	81	5	.	45
APOBEC4	403314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183617170	183617170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	APOBEC4	NM_203454	exon2	c.T747A	p.N249K	.	.	688	180	731	0	.	90
APTX	54840	bcgsc.ca	37	9	32984737	32984737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	APTX	NM_001195248	exon6	c.T704C	p.L235P	.	.	70	4	213	13	.	91
ASIC1	41	broad.mit.edu;bcgsc.ca	37	12	50452876	50452876	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_020039	exon2	c.T327C	p.Y109Y	.	.	58	4	154	0	.	.
ATAD2	29028	broad.mit.edu;bcgsc.ca	37	8	124368685	124368685	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ATAD2	NM_014109	exon13	c.1590delT	p.F530fs	.	.	69	7	94	0	.	92
ATP13A3	79572	broad.mit.edu;bcgsc.ca	37	3	194180577	194180577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ATP13A3	NM_024524	exon4	c.A349G	p.N117D	.	.	98	6	201	0	.	69
ATP6V1E2	90423	bcgsc.ca	37	2	46739661	46739661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ATP6V1E2	NM_080653	exon2	c.A190G	p.I64V	.	.	135	5	321	1	.	70
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	348180	348180	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AXIN1	NM_181050	exon6	c.1326delC	p.P442fs	.	.	12	10	53	0	.	684
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	155	2	236	2	.	90
BAZ1B	9031	bcgsc.ca	37	7	72858318	72858318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	BAZ1B	NM_032408	exon17	c.A3986G	p.E1329G	.	.	57	4	99	0	.	159
BCORL1	63035	bcgsc.ca	37	X	129158992	129158992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	BCORL1	NM_021946	exon6	c.T3716C	p.M1239T	.	.	59	4	79	0	.	294
BORA	79866	bcgsc.ca	37	13	73327910	73327910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_024808	exon11	c.A1565G	p.D522G	.	.	218	7	269	1	.	.
BPNT1	10380	ucsc.edu	37	1	220231275	220231275	+	RNA	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	BPNT1	.	.	.	.	.	.	152	1	130	0	.	91
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15350762	15350762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	BRD4	NM_058243	exon15	c.C3241T	p.H1081Y	.	.	96	43	199	0	.	767
C11orf24	53838	ucsc.edu;bcgsc.ca	37	11	68031184	68031184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C11orf24	NM_022338	exon3	c.A52G	p.S18G	.	.	32	4	77	0	.	90
C11orf30	56946	bcgsc.ca	37	11	76162969	76162969	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C11orf30	NM_020193	exon3	c.A138G	p.K46K	.	.	99	6	142	0	.	232
C19orf45	374877	hgsc.bcm.edu	37	19	7565988	7565988	+	Missense_Mutation	SNP	T	T	A	rs79777490	byfrequency	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C19orf45	NM_198534	exon2	c.T280A	p.W94R	.	.	7	6	0	0	T|0.979;A|0.021	90
C1orf226	400793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162353415	162353415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C1orf226	NM_001135240	exon3	c.C890T	p.A297V	.	.	42	14	36	0	.	1
C2CD5	9847	bcgsc.ca	37	12	22646214	22646214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_014802	exon11	c.A1205G	p.H402R	.	.	78	4	170	0	.	.
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6682236	6682236	+	Missense_Mutation	SNP	G	G	C	rs148227405	alternate_allele	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C3	NM_000064	exon34	c.C4177G	p.R1393G	.	.	55	20	148	0	G|1.000;A|0.000	95
C6	729	bcgsc.ca	37	5	41161823	41161823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C6	NM_001115131	exon10	c.A1430G	p.K477R	.	.	80	4	168	0	.	95
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41201723	41201723	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C6	NM_001115131	exon3	c.C237T	p.P79P	.	.	183	79	343	0	.	95
C7orf29	113763	bcgsc.ca	37	7	150027617	150027617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	C7orf29	NM_138434	exon1	c.A124G	p.R42G	.	.	53	5	112	7	.	91
CASP8	841	bcgsc.ca	37	2	202149923	202149923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CASP8	NM_001080125	exon8	c.A1364G	p.E455G	.	.	58	5	108	1	.	660
CCDC105	126402	ucsc.edu;bcgsc.ca	37	19	15122125	15122125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC105	NM_173482	exon1	c.A488G	p.H163R	.	.	43	4	41	1	.	91
CCDC127	133957	bcgsc.ca	37	5	205439	205439	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC127	NM_145265	exon3	c.A756G	p.R252R	.	.	124	5	391	7	.	68
CCDC40	55036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78011929	78011929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC40	NM_017950	exon2	c.C37T	p.P13S	.	.	73	35	107	0	.	71
CCDC63	160762	bcgsc.ca	37	12	111342407	111342407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CCDC63	NM_152591	exon11	c.A1358G	p.K453R	.	.	73	4	162	0	.	134
CCT6P3	643180	ucsc.edu	37	7	64529883	64529883	+	RNA	SNP	C	C	T	rs55866961	bycluster	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	14	4	11	0	.	.
CDH23	64072	bcgsc.ca	37	10	73551045	73551045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CDH23	NM_022124	exon45	c.T6206C	p.F2069S	.	.	53	4	121	1	.	563
CELF2	10659	bcgsc.ca	37	10	11299722	11299722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CELF2	NM_006561	exon5	c.T425C	p.F142S	.	.	70	5	125	0	.	90
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80971304	80971304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CEP128	NM_152446	exon23	c.G3132T	p.W1044C	.	.	23	7	68	0	.	91
CERKL	375298	bcgsc.ca	37	2	182403896	182403896	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CERKL	NM_001030311	exon13	c.T1539C	p.D513D	.	.	138	5	258	0	.	228
CLEC18C	283971	broad.mit.edu	37	16	70211266	70211266	+	Silent	SNP	G	G	A	rs142678589		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CLEC18C	NM_173619	exon3	c.G339A	p.L113L	.	.	335	9	975	2	G|1.000;A|0.000	22
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57738828	57738828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CLTC	NM_004859	exon8	c.A1192G	p.I398V	.	.	83	32	141	0	.	835
COL12A1	1303	bcgsc.ca	37	6	75833676	75833676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	COL12A1	NM_004370	exon42	c.A6859G	p.K2287E	.	.	73	4	116	0	.	142
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9504	9504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	ENST00000362079	exon1	c.G298A	p.A100T	.	.	265	17	46	0	.	.
CPLX4	339302	ucsc.edu;bcgsc.ca	37	18	56979978	56979978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CPLX4	NM_181654	exon2	c.A194G	p.Q65R	.	.	38	4	190	0	.	91
CPNE3	8895	bcgsc.ca	37	8	87543417	87543417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CPNE3	NM_003909	exon5	c.T347C	p.V116A	.	.	156	7	212	0	.	117
CPQ	10404	bcgsc.ca	37	8	98041658	98041658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_016134	exon6	c.T989C	p.L330P	.	.	100	4	85	0	.	.
CSMD1	64478	bcgsc.ca	37	8	2824134	2824134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CSMD1	NM_033225	exon58	c.A9058G	p.T3020A	.	.	89	5	199	1	.	86
CSTL1	128817	bcgsc.ca	37	20	23425455	23425455	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	CSTL1	NM_138283	exon4	c.T378C	p.Y126Y	.	.	101	5	287	0	.	90
DCC	1630	bcgsc.ca	37	18	50432508	50432508	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DCC	NM_005215	exon3	c.A507G	p.P169P	.	.	49	4	171	0	.	225
DCDC2B	149069	ucsc.edu	37	1	32677396	32677396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_001099434	exon3	c.C353T	p.A118V	.	.	37	4	90	0	.	.
DDX19A	55308	bcgsc.ca	37	16	70389399	70389399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DDX19A	NM_018332	exon3	c.A118G	p.T40A	.	.	57	4	300	3	.	180
DGKA	1606	bcgsc.ca	37	12	56345829	56345829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DGKA	NM_201554	exon19	c.T1598C	p.I533T	.	.	77	5	128	0	.	255
DLD	1738	bcgsc.ca	37	7	107545452	107545452	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DLD	NM_000108	exon6	c.T387C	p.T129T	.	.	57	4	67	0	.	226
DLEC1	9940	bcgsc.ca	37	3	38138102	38138102	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DLEC1	NM_007337	exon15	c.T2214C	p.D738D	.	.	44	4	133	0	.	161
DMXL2	23312	bcgsc.ca	37	15	51787291	51787291	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DMXL2	NM_001174116	exon19	c.A4713G	p.L1571L	.	.	74	4	130	0	.	99
DNAH1	25981	bcgsc.ca	37	3	52433564	52433564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DNAH1	NM_015512	exon77	c.A12445G	p.M4149V	.	.	96	4	206	1	.	67
DNAH9	1770	broad.mit.edu;bcgsc.ca	37	17	11795184	11795184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DNAH9	NM_001372	exon58	c.A11203G	p.T3735A	.	.	81	5	188	0	.	168
DOCK11	139818	bcgsc.ca	37	X	117722429	117722429	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DOCK11	NM_144658	exon18	c.T2034C	p.A678A	.	.	96	5	219	0	.	93
DRD3	1814	bcgsc.ca	37	3	113847668	113847668	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DRD3	NM_000796	exon7	c.T1098C	p.S366S	.	.	100	4	167	1	.	93
DSN1	79980	bcgsc.ca	37	20	35390902	35390902	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DSN1	NM_001145315	exon6	c.T552C	p.T184T	.	.	120	5	142	0	.	92
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167095694	167095694	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	DUSP27	NM_001080426	exon5	c.C1326T	p.S442S	.	.	55	19	35	0	.	71
EGFR	1956	ucsc.edu;bcgsc.ca	37	7	55270298	55270298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EGFR	NM_005228	exon27	c.A3251G	p.D1084G	.	.	46	4	78	0	.	44910
EIF3A	8661	broad.mit.edu	37	10	120809380	120809380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EIF3A	NM_003750	exon17	c.A2591T	p.E864V	.	.	197	5	528	0	.	226
EN2	2020	bcgsc.ca	37	7	155251073	155251073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EN2	NM_001427	exon1	c.A1G	p.M1V	.	.	66	4	54	1	.	90
ENPP2	5168	bcgsc.ca	37	8	120650709	120650709	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ENPP2	NM_001130863	exon2	c.A92C	p.H31P	.	.	86	4	139	0	.	292
ENTPD3	956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	40442397	40442397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ENTPD3	NM_001248	exon4	c.C181T	p.L61L	.	.	157	68	381	0	.	91
EP400	57634	broad.mit.edu	37	12	132547138	132547138	+	Silent	SNP	A	A	G	rs111782215	byfrequency	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EP400	NM_015409	exon47	c.A8226G	p.Q2742Q	.	.	142	5	72	2	A|0.995;G|0.005	520
EP400	57634	broad.mit.edu;bcgsc.ca	37	12	132547141	132547141	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EP400	NM_015409	exon47	c.G8229A	p.Q2743Q	.	.	149	2	80	1	.	520
EPHA2	1969	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16464912	16464912	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EPHA2	NM_004431	exon4	c.A837G	p.G279G	.	.	8	3	69	0	.	1419
ESPNP	284729	broad.mit.edu	37	1	17033429	17033429	+	RNA	SNP	G	G	A	rs13374579		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	10	4	26	0	G|1.000;|0.000	.
ETFDH	2110	bcgsc.ca	37	4	159611523	159611523	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ETFDH	NM_004453	exon6	c.T630C	p.S210S	.	.	115	5	353	3	.	154
EXOC7	23265	bcgsc.ca	37	17	74086480	74086480	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	EXOC7	NM_001145297	exon8	c.A984G	p.P328P	.	.	62	4	103	0	.	90
FAM104B	90736	ucsc.edu;bcgsc.ca	37	X	55172691	55172691	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FAM104B	NM_001166699	exon3	c.A177G	p.R59R	.	.	38	4	55	0	.	130
FAM114A2	10827	bcgsc.ca	37	5	153406873	153406873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FAM114A2	NM_018691	exon7	c.A652G	p.K218E	.	.	148	5	221	0	.	90
FAM160B1	57700	bcgsc.ca	37	10	116595939	116595939	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FAM160B1	NM_020940	exon5	c.T456C	p.I152I	.	.	56	4	79	0	.	91
FAM92A1	137392	broad.mit.edu	37	8	94722007	94722007	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	268	6	427	0	.	.
FANCM	57697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	45658561	45658561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FANCM	NM_020937	exon20	c.A5336G	p.Q1779R	.	.	72	23	88	0	.	569
FAT4	79633	bcgsc.ca	37	4	126371425	126371425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FAT4	NM_024582	exon9	c.A9254G	p.H3085R	.	.	78	5	141	0	.	108
FBXO11	80204	bcgsc.ca	37	2	48066630	48066630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FBXO11	NM_001190274	exon3	c.A370G	p.T124A	.	.	140	5	279	0	.	659
FOXN2	3344	bcgsc.ca	37	2	48602476	48602476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FOXN2	NM_002158	exon7	c.T1190C	p.L397P	.	.	67	6	70	0	.	226
FOXO3	2309	ucsc.edu;bcgsc.ca	37	6	108985092	108985092	+	Silent	SNP	C	C	G	rs200866771		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	FOXO3	NM_001455	exon2	c.C1056G	p.A352A	.	.	85	11	108	2	C|0.999;G|0.001	1295
GABRA1	2554	bcgsc.ca	37	5	161324320	161324320	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GABRA1	NM_001127643	exon11	c.A1263G	p.R421R	.	.	97	5	152	0	.	93
GART	2618	bcgsc.ca	37	21	34900497	34900497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GART	NM_001136005	exon10	c.T1042C	p.Y348H	.	.	79	5	123	0	.	91
GBP1	2633	bcgsc.ca	37	1	89523693	89523693	+	Missense_Mutation	SNP	T	T	C	rs139841530		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GBP1	NM_002053	exon6	c.A856G	p.I286V	.	.	71	4	182	0	T|1.000;C|0.000	92
GDF15	9518	bcgsc.ca	37	19	18497181	18497181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GDF15	NM_004864	exon1	c.A182G	p.E61G	.	.	47	4	67	0	.	650
GLOD4	51031	broad.mit.edu	37	17	679075	679075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GLOD4	NM_016080	exon4	c.G346A	p.E116K	.	.	63	3	86	1	.	90
GNPTAB	79158	bcgsc.ca	37	12	102173944	102173944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GNPTAB	NM_024312	exon7	c.T757C	p.S253P	.	.	172	6	674	0	.	92
GOT1	2805	bcgsc.ca	37	10	101165589	101165589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GOT1	NM_002079	exon5	c.T566C	p.L189P	.	.	102	5	206	0	.	90
GPR126	57211	bcgsc.ca	37	6	142630770	142630770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GPR126	NM_198569	exon2	c.T92C	p.V31A	.	.	147	6	284	0	.	91
GPR158	57512	bcgsc.ca	37	10	25684904	25684904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GPR158	NM_020752	exon3	c.T1073C	p.F358S	.	.	139	5	250	0	.	141
GPR32	2854	bcgsc.ca	37	19	51274024	51274024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GPR32	NM_001506	exon1	c.T167C	p.V56A	.	.	184	7	384	3	.	91
GPR97	222487	bcgsc.ca	37	16	57714194	57714194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GPR97	NM_170776	exon7	c.T685C	p.S229P	.	.	62	5	234	0	.	91
GRIN2A	2903	bcgsc.ca	37	16	9857146	9857146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	GRIN2A	NM_000833	exon14	c.C4255T	p.H1419Y	.	.	47	4	149	0	.	349
HAPLN1	1404	bcgsc.ca	37	5	82948622	82948622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HAPLN1	NM_001884	exon3	c.T122C	p.L41P	.	.	63	4	90	0	.	580
HDAC10	83933	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50688345	50688345	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HDAC10	NM_032019	exon5	c.G438T	p.V146V	.	.	63	29	77	2	.	226
HERC1	8925	broad.mit.edu;bcgsc.ca	37	15	63932493	63932493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HERC1	NM_003922	exon61	c.A11759G	p.N3920S	.	.	78	6	167	0	.	666
HLA-DOA	3111	bcgsc.ca	37	6	32975234	32975234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HLA-DOA	NM_002119	exon3	c.A467G	p.E156G	.	.	52	4	91	1	.	514
HP1BP3	50809	bcgsc.ca	37	1	21091935	21091935	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HP1BP3	NM_016287	exon8	c.A825G	p.E275E	.	.	56	4	202	0	.	91
HPCAL4	51440	bcgsc.ca	37	1	40150188	40150188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	HPCAL4	NM_016257	exon2	c.T88C	p.W30R	.	.	43	4	102	2	.	90
ICAM3	3385	broad.mit.edu	37	19	10444566	10444566	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ICAM3	NM_002162	exon7	c.A1611G	p.E537E	.	.	96	4	277	0	.	131
IER5	51278	hgsc.bcm.edu	37	1	181058272	181058272	+	Silent	SNP	G	G	T	rs113028155		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	IER5	NM_016545	exon1	c.G234T	p.G78G	.	.	20	11	0	0	G|0.976;T|0.024	227
IGSF9B	22997	bcgsc.ca	37	11	133816004	133816004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	IGSF9B	NM_014987	exon2	c.T214C	p.F72L	.	.	60	4	132	0	.	68
IL12RB2	3595	bcgsc.ca	37	1	67861736	67861736	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	IL12RB2	NM_001559	exon16	c.T2553C	p.D851D	.	.	61	4	315	1	.	92
IMPG2	50939	bcgsc.ca	37	3	100972616	100972616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	IMPG2	NM_016247	exon11	c.T1163C	p.V388A	.	.	58	4	77	0	.	93
ING4	51147	bcgsc.ca	37	12	6762480	6762480	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ING4	NM_001127584	exon3	c.T192C	p.L64L	.	.	113	5	249	2	.	515
INPP5E	56623	bcgsc.ca	37	9	139326378	139326378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	INPP5E	NM_019892	exon7	c.A1447G	p.S483G	.	.	37	4	95	1	.	227
ITFG1	81533	bcgsc.ca	37	16	47487950	47487950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ITFG1	NM_030790	exon3	c.T401C	p.I134T	.	.	98	6	344	1	.	91
ITFG2	55846	bcgsc.ca	37	12	2930459	2930459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ITFG2	NM_018463	exon7	c.C727T	p.H243Y	.	.	80	5	144	0	.	90
ITGAL	3683	bcgsc.ca	37	16	30492784	30492784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ITGAL	NM_002209	exon7	c.A601G	p.S201G	.	.	78	4	366	1	.	994
ITPKA	3706	bcgsc.ca	37	15	41794671	41794671	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ITPKA	NM_002220	exon5	c.A1080G	p.E360E	.	.	62	5	102	0	.	226
JRKL	8690	broad.mit.edu;bcgsc.ca	37	11	96124918	96124918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	JRKL	NM_001261833	exon2	c.A1105G	p.I369V	.	.	133	5	207	0	.	90
KAZN	23254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14925544	14925544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KAZN	NM_015209	exon1	c.G51C	p.Q17H	.	.	67	50	196	0	.	91
KCTD19	146212	bcgsc.ca	37	16	67354566	67354566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KCTD19	NM_001100915	exon2	c.T226C	p.S76P	.	.	68	4	209	0	.	69
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu	37	19	34791642	34791642	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIAA0355	NM_014686	exon2	c.C264T	p.N88N	.	.	72	5	135	0	.	91
KIAA1432	57589	bcgsc.ca	37	9	5773999	5773999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIAA1432	NM_020829	exon26	c.T4025C	p.L1342P	.	.	80	4	227	0	.	90
KIAA1549L	25758	bcgsc.ca	37	11	33583283	33583283	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_012194	exon7	c.3187+2T>C	.	.	.	82	4	215	0	.	.
KIAA2022	340533	bcgsc.ca	37	X	73960040	73960040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIAA2022	NM_001008537	exon3	c.A4352G	p.K1451R	.	.	62	4	131	0	.	183
KIF13B	23303	bcgsc.ca	37	8	28980150	28980150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIF13B	NM_015254	exon29	c.G3493A	p.G1165R	.	.	83	4	153	0	.	22
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39688230	39688230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KIF21A	NM_001173464	exon38	c.A5021G	p.N1674S	.	.	104	36	314	0	.	97
KNTC1	9735	bcgsc.ca	37	12	123032479	123032479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	KNTC1	NM_014708	exon12	c.T950C	p.L317P	.	.	62	4	119	1	.	543
LAMA2	3908	bcgsc.ca	37	6	129588278	129588278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LAMA2	NM_000426	exon16	c.A2236G	p.N746D	.	.	131	6	237	1	.	162
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107704297	107704298	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LAMB4	NM_007356	exon22	c.2969_2970del	p.990_990del	.	.	181	0	438	0	.	140
LEPREL1	55214	bcgsc.ca	37	3	189691714	189691714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LEPREL1	NM_018192	exon10	c.T1532C	p.V511A	.	.	150	5	245	0	.	155
LOC642236	0	bcgsc.ca	37	9	68437759	68437759	+	RNA	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	156	14	436	4	.	.
LSM6	11157	bcgsc.ca	37	4	147104166	147104166	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LSM6	NM_007080	exon2	c.A93G	p.R31R	.	.	54	4	159	0	.	226
LUZP1	7798	bcgsc.ca	37	1	23420121	23420121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LUZP1	NM_033631	exon4	c.A634G	p.K212E	.	.	81	6	211	1	.	90
LY75	4065	bcgsc.ca	37	2	160732075	160732075	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	LY75	NM_002349	exon12	c.A1854G	p.K618K	.	.	52	4	102	0	.	90
MAGEA12	4111	bcgsc.ca	37	X	151900284	151900284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MAGEA12	NM_005367	exon2	c.G517A	p.G173S	.	.	157	7	319	1	.	131
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12975699	12975699	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MAST1	NM_014975	exon13	c.G1443T	p.T481T	.	.	54	26	143	0	.	523
MDM4	4194	bcgsc.ca	37	1	204515997	204515997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MDM4	NM_002393	exon10	c.A895G	p.T299A	.	.	108	5	122	1	.	1271
MFSD3	113655	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145735131	145735131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MFSD3	NM_138431	exon1	c.C415T	p.Q139X	.	.	60	27	44	0	.	69
MIS12	79003	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	5392627	5392627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MIS12	NM_001258220	exon2	c.C445T	p.Q149X	.	.	102	9	168	0	.	90
MLL2	8085	bcgsc.ca	37	12	49427616	49427616	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MLL2	NM_003482	exon39	c.T10872C	p.S3624S	.	.	53	4	87	4	.	612
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36211168	36211168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MLL4	NM_014727	exon3	c.T919C	p.F307L	.	.	66	27	54	0	.	697
MN1	4330	broad.mit.edu;mdanderson.org	37	22	28194927	28194927	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MN1	NM_002430	exon1	c.G1605A	p.Q535Q	.	.	36	9	20	1	.	993
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122097220	122097220	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MORN3	NM_173855	exon2	c.C180T	p.A60A	.	.	94	33	233	0	.	90
MPND	84954	bcgsc.ca	37	19	4354331	4354331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MPND	NM_032868	exon6	c.A760G	p.T254A	.	.	60	4	99	0	.	522
MRPL55	128308	bcgsc.ca	37	1	228294574	228294574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MRPL55	NM_181462	exon6	c.A382G	p.R128G	.	.	67	5	109	0	.	90
MTCH2	23788	bcgsc.ca	37	11	47650566	47650566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MTCH2	NM_014342	exon9	c.T572C	p.L191P	.	.	75	4	103	1	.	90
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149814213	149814213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MTM1	NM_000252	exon9	c.C736T	p.L246F	.	.	119	104	177	0	.	228
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1096485	1096485	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MUC2	NM_002457	exon35	c.6498delG	p.K2166fs	.	.	50	23	110	0	.	90
MYBPC1	4604	bcgsc.ca	37	12	102030471	102030471	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MYBPC1	NM_206819	exon10	c.A630G	p.A210A	.	.	154	5	304	0	.	94
MYO1E	4643	bcgsc.ca	37	15	59564526	59564526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	MYO1E	NM_004998	exon2	c.A126G	p.R42R	.	.	104	5	298	0	.	514
NAP1L1	4673	broad.mit.edu;bcgsc.ca	37	12	76447635	76447635	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NAP1L1	NM_004537	exon9	c.C685T	p.L229L	.	.	199	7	369	0	.	92
NBPF10	100132406	bcgsc.ca	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	byfrequency	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_001039703	exon3	c.C325T	p.L109L	.	.	79	7	330	1	C|0.959;T|0.041	.
NBPF7	343505	bcgsc.ca	37	1	120382910	120382910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NBPF7	NM_001047980	exon4	c.T596C	p.L199P	.	.	87	4	386	0	.	24
NCF2	4688	bcgsc.ca	37	1	183542382	183542382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NCF2	NM_001127651	exon6	c.T547C	p.F183L	.	.	121	5	194	0	.	93
NCKAP5	344148	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133538773	133538773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_207363	exon15	c.A4901C	p.E1634A	.	.	275	124	423	2	.	.
ND2	0	bcgsc.ca	37	MT	5296	5296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	ENST00000361453	exon1	c.T827C	p.L276P	.	.	254	15	65	1	.	.
NDST3	9348	bcgsc.ca	37	4	119145800	119145800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NDST3	NM_004784	exon7	c.T1694C	p.F565S	.	.	61	4	210	0	.	153
NEB	4703	bcgsc.ca	37	2	152499708	152499708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NEB	NM_004543	exon58	c.A8116G	p.I2706V	.	.	139	5	257	0	.	145
NOC2L	26155	ucsc.edu;bcgsc.ca	37	1	883916	883916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NOC2L	NM_015658	exon13	c.T1511C	p.V504A	.	.	28	4	116	0	.	92
NOM1	64434	bcgsc.ca	37	7	156756644	156756644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NOM1	NM_138400	exon7	c.A1957G	p.T653A	.	.	77	4	126	0	.	90
NRP1	8829	bcgsc.ca	37	10	33545309	33545309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NRP1	NM_001024629	exon5	c.A749G	p.D250G	.	.	119	5	190	1	.	525
NUMA1	4926	bcgsc.ca	37	11	71735364	71735364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NUMA1	NM_006185	exon5	c.A164G	p.Q55R	.	.	56	4	123	0	.	633
NUP155	9631	bcgsc.ca	37	5	37302882	37302882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	NUP155	NM_153485	exon29	c.A3446G	p.E1149G	.	.	69	6	145	1	.	205
OGFOD3	79701	bcgsc.ca	37	17	80363227	80363227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_175902	exon6	c.T518C	p.F173S	.	.	181	6	316	0	.	.
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9792677	9792677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OGG1	NM_016819	exon2	c.A186C	p.Q62H	.	.	71	24	177	0	.	660
OR5P2	120065	bcgsc.ca	37	11	7818105	7818105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OR5P2	NM_153444	exon1	c.T385C	p.S129P	.	.	66	4	90	1	.	496
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29597095	29597095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	OVCH1	NM_183378	exon24	c.T3000C	p.S1000S	.	.	73	25	102	0	.	210
PARP9	83666	bcgsc.ca	37	3	122247407	122247407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PARP9	NM_031458	exon11	c.A2369G	p.D790G	.	.	101	4	186	0	.	525
PAX6	5080	bcgsc.ca	37	11	31823155	31823155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PAX6	NM_001604	exon7	c.A353G	p.D118G	.	.	94	5	166	1	.	1086
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	4925135	4925135	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_032972	exon1	c.A271T	p.T91S	.	.	219	11	275	0	.	.
PDE6C	5146	ucsc.edu	37	10	95381805	95381805	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PDE6C	NM_006204	exon4	c.A840G	p.G280G	.	.	40	4	87	1	.	94
PEX13	5194	bcgsc.ca	37	2	61258654	61258654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PEX13	NM_002618	exon2	c.A193G	p.S65G	.	.	105	5	312	0	.	91
PEX1	5189	bcgsc.ca	37	7	92118694	92118694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PEX1	NM_000466	exon23	c.T3680C	p.L1227P	.	.	159	5	350	0	.	91
PHB2	11331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7078680	7078680	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PHB2	.	.	.	.	.	.	62	31	142	1	.	48
PIGC	5279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172413127	172413127	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PIGC	.	.	.	.	.	.	71	43	61	0	.	226
PIGN	23556	bcgsc.ca	37	18	59821809	59821809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PIGN	NM_176787	exon7	c.A518G	p.K173R	.	.	47	4	105	0	.	227
PIK3C2G	5288	bcgsc.ca	37	12	18793438	18793438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PIK3C2G	NM_004570	exon31	c.A4135G	p.R1379G	.	.	170	7	416	3	.	1312
PIK3C3	5289	bcgsc.ca	37	18	39620639	39620639	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PIK3C3	NM_002647	exon19	c.2039-2A>G	.	.	.	77	4	349	0	.	1312
PKHD1L1	93035	bcgsc.ca	37	8	110466964	110466964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PKHD1L1	NM_177531	exon45	c.A6757G	p.T2253A	.	.	140	5	347	4	.	145
PLA2R1	22925	bcgsc.ca	37	2	160832606	160832606	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLA2R1	NM_001195641	exon17	c.A2568G	p.Q856Q	.	.	202	6	420	0	.	93
PLAC8L1	153770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145483862	145483862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLAC8L1	NM_001029869	exon1	c.G13A	p.G5R	.	.	135	52	296	0	.	90
PLEKHA1	59338	bcgsc.ca	37	10	124189215	124189215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLEKHA1	NM_001001974	exon12	c.A976G	p.T326A	.	.	79	4	130	0	.	226
PLEKHD1	400224	bcgsc.ca	37	14	69994014	69994014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLEKHD1	NM_001161498	exon11	c.A1166G	p.E389G	.	.	73	4	117	0	.	68
PLK2	10769	broad.mit.edu;bcgsc.ca	37	5	57753012	57753012	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLK2	NM_006622	exon7	c.1004delT	p.L335fs	.	.	66	8	85	0	.	409
PLXNA1	5361	broad.mit.edu;bcgsc.ca	37	3	126723964	126723964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PLXNA1	NM_032242	exon6	c.T1775C	p.L592P	.	.	69	4	169	0	.	93
PNPLA1	285848	bcgsc.ca	37	6	36275464	36275464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PNPLA1	NM_001145717	exon8	c.T1570C	p.S524P	.	.	132	5	213	1	.	137
POGLUT1	56983	bcgsc.ca	37	3	119211158	119211158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	POGLUT1	NM_152305	exon11	c.A1052G	p.Q351R	.	.	64	4	155	0	.	91
POLR1A	25885	bcgsc.ca	37	2	86316996	86316996	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	POLR1A	NM_015425	exon4	c.A489G	p.Q163Q	.	.	73	4	259	0	.	93
POLR2B	5431	bcgsc.ca	37	4	57883833	57883833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	POLR2B	NM_000938	exon16	c.T2262C	p.P754P	.	.	94	5	219	1	.	92
POTEC	388468	bcgsc.ca	37	18	14542654	14542654	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	POTEC	NM_001137671	exon1	c.G492T	p.T164T	.	.	227	18	1359	11	.	3
PPFIA1	8500	bcgsc.ca	37	11	70201813	70201813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PPFIA1	NM_177423	exon18	c.A2384G	p.H795R	.	.	100	5	146	0	.	228
PRKG1	5592	bcgsc.ca	37	10	53227489	53227489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PRKG1	NM_006258	exon3	c.A485G	p.K162R	.	.	96	4	114	0	.	523
PROCR	10544	bcgsc.ca	37	20	33759987	33759987	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PROCR	NM_006404	exon1	c.G30A	p.L10L	.	.	56	4	104	0	.	226
PSMA8	143471	bcgsc.ca	37	18	23758825	23758825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PSMA8	NM_144662	exon5	c.T527C	p.V176A	.	.	91	4	211	0	.	91
PTPRD	5789	bcgsc.ca	37	9	8484143	8484143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	PTPRD	NM_002839	exon30	c.A3389G	p.E1130G	.	.	80	4	204	0	.	912
RAB2A	5862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61496802	61496802	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAB2A	NM_002865	exon4	c.G222T	p.S74S	.	.	115	39	177	0	.	659
RAP1GAP	5909	ucsc.edu;bcgsc.ca	37	1	21940577	21940577	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAP1GAP	NM_001145658	exon8	c.T489C	p.H163H	.	.	28	4	99	1	.	245
RAPH1	65059	broad.mit.edu	37	2	204304815	204304815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RAPH1	NM_213589	exon14	c.C3098T	p.S1033F	.	.	72	3	117	0	.	1151
RASA3	22821	bcgsc.ca	37	13	114793338	114793338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RASA3	NM_007368	exon6	c.T515C	p.L172P	.	.	82	4	121	1	.	658
RASGRF2	5924	bcgsc.ca	37	5	80515539	80515539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RASGRF2	NM_006909	exon26	c.T3563C	p.I1188T	.	.	185	6	288	0	.	725
RBM28	55131	bcgsc.ca	37	7	127961341	127961341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RBM28	NM_018077	exon14	c.A1541G	p.E514G	.	.	72	4	186	2	.	92
REPS1	85021	bcgsc.ca	37	6	139232482	139232482	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	REPS1	NM_031922	exon17	c.T1995C	p.S665S	.	.	121	5	182	0	.	522
RGL3	57139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11517408	11517408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RGL3	NM_001035223	exon6	c.T770A	p.L257H	.	.	30	18	69	0	.	227
RIMS2	9699	bcgsc.ca	37	8	104927757	104927757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RIMS2	NM_001100117	exon7	c.T1847C	p.L616P	.	.	65	4	137	0	.	279
RNF157	114804	bcgsc.ca	37	17	74152377	74152377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RNF157	NM_052916	exon14	c.A1439G	p.E480G	.	.	54	4	96	0	.	228
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5681008	5681008	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RNF216	NM_207116	exon16	c.1989-1G>T	.	.	.	90	42	105	0	.	274
RNPC3	55599	bcgsc.ca	37	1	104094395	104094395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_017619	exon14	c.A1547G	p.K516R	.	.	92	4	226	0	.	.
RNR2	6053	broad.mit.edu	37	MT	2645	2645	+	RNA	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	255	4	54	0	.	.
RPS21	6227	broad.mit.edu	37	20	60963367	60963367	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RPS21	NM_001024	exon5	c.T189G	p.G63G	.	.	171	58	163	30	.	90
RRAGC	64121	bcgsc.ca	37	1	39321507	39321507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	RRAGC	NM_022157	exon3	c.A514G	p.N172D	.	.	89	4	271	0	.	91
S100A6	6277	bcgsc.ca	37	1	153507242	153507242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	S100A6	NM_014624	exon3	c.T203C	p.V68A	.	.	81	5	162	0	.	91
S1PR3	1903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	91616620	91616620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	S1PR3	NM_005226	exon2	c.G505T	p.G169C	.	.	50	39	85	0	.	949
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51171120	51171120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SALL1	NM_002968	exon3	c.C3878T	p.P1293L	.	.	44	29	172	0	.	98
SALL2	6297	ucsc.edu;bcgsc.ca	37	14	21991026	21991026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SALL2	NM_005407	exon2	c.A2836G	p.R946G	.	.	29	4	65	0	.	92
SATB1	6304	bcgsc.ca	37	3	18458519	18458519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SATB1	NM_002971	exon3	c.A263G	p.E88G	.	.	70	4	132	0	.	228
SBF2	81846	bcgsc.ca	37	11	10215521	10215521	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SBF2	NM_030962	exon2	c.T69C	p.G23G	.	.	81	5	164	0	.	93
SBNO2	22904	bcgsc.ca	37	19	1112821	1112821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_014963	exon20	c.A2375G	p.E792G	.	.	72	5	94	0	.	.
SCG3	29106	bcgsc.ca	37	15	51981425	51981425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SCG3	NM_013243	exon6	c.A550G	p.S184G	.	.	153	5	269	0	.	91
SDHAF2	54949	bcgsc.ca	37	11	61205504	61205504	+	Missense_Mutation	SNP	A	A	G	rs201520416		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SDHAF2	NM_017841	exon3	c.A289G	p.M97V	.	.	103	4	155	0	A|0.999;G|0.000	92
SEMG1	6406	bcgsc.ca	37	20	43835699	43835699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SEMG1	NM_003007	exon1	c.A5G	p.K2R	.	.	187	7	356	1	.	92
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180036920	180036920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SESTD1	NM_178123	exon5	c.A296G	p.K99R	.	.	195	77	304	0	.	228
SF3B1	23451	bcgsc.ca	37	2	198274552	198274552	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SF3B1	NM_012433	exon7	c.A846G	p.G282G	.	.	124	5	282	0	.	140
SH2D5	400745	broad.mit.edu	37	1	21054089	21054089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SH2D5	NM_001103161	exon3	c.G95A	p.G32D	.	.	42	3	145	0	.	68
SH3PXD2A	9644	bcgsc.ca	37	10	105363018	105363018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SH3PXD2A	NM_014631	exon14	c.A1873G	p.T625A	.	.	48	4	136	0	.	226
SIK2	23235	bcgsc.ca	37	11	111491128	111491128	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SIK2	NM_015191	exon3	c.316+2T>C	.	.	.	85	4	173	0	.	783
SKIV2L	6499	ucsc.edu;bcgsc.ca	37	6	31929371	31929371	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SKIV2L	NM_006929	exon9	c.T837C	p.S279S	.	.	30	4	95	0	.	290
SLC12A7	10723	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1079607	1079607	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC12A7	NM_006598	exon10	c.C1302T	p.I434I	.	.	45	16	108	0	.	138
SLC22A3	6581	bcgsc.ca	37	6	160828180	160828180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC22A3	NM_021977	exon3	c.T641C	p.L214P	.	.	207	6	581	0	.	517
SLC28A3	64078	bcgsc.ca	37	9	86900402	86900402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC28A3	NM_001199633	exon14	c.A1505G	p.Q502R	.	.	45	4	190	0	.	94
SLC2A10	81031	bcgsc.ca	37	20	45354521	45354521	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC2A10	NM_030777	exon2	c.A846G	p.A282A	.	.	71	4	177	1	.	91
SLC2A6	11182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136339125	136339125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC2A6	NM_017585	exon7	c.G1013T	p.R338L	.	.	24	15	96	1	.	90
SLC30A6	55676	bcgsc.ca	37	2	32445698	32445698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC30A6	NM_001193513	exon15	c.A1422G	p.G474G	.	.	103	4	144	0	.	90
SLC30A8	169026	bcgsc.ca	37	8	118175710	118175710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC30A8	NM_173851	exon6	c.T770C	p.I257T	.	.	88	5	191	0	.	229
SLC9A4	389015	broad.mit.edu;bcgsc.ca	37	2	103124578	103124578	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLC9A4	NM_001011552	exon5	c.T1239C	p.T413T	.	.	366	8	797	0	.	92
SLIT2	9353	bcgsc.ca	37	4	20550723	20550723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLIT2	NM_004787	exon24	c.T2461C	p.F821L	.	.	66	4	160	0	.	521
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164907129	164907129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLITRK3	NM_014926	exon2	c.C1490T	p.P497L	.	.	43	23	69	0	.	100
SLITRK5	26050	bcgsc.ca	37	13	88329712	88329712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SLITRK5	NM_015567	exon2	c.A2069G	p.K690R	.	.	79	4	180	0	.	94
SOGA3	387104	bcgsc.ca	37	6	127804080	127804080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_001012279	exon5	c.A1535G	p.K512R	.	.	149	7	315	0	.	.
SOX6	55553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15994640	15994640	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SOX6	NM_001145819	exon16	c.A2241T	p.P747P	.	.	125	60	160	0	.	93
SPACA1	81833	bcgsc.ca	37	6	88763664	88763664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SPACA1	NM_030960	exon2	c.T209C	p.V70A	.	.	76	5	95	0	.	90
SPDYA	245711	bcgsc.ca	37	2	29052077	29052077	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SPDYA	NM_001142634	exon5	c.T444C	p.A148A	.	.	82	4	176	0	.	92
SPEN	23013	bcgsc.ca	37	1	16255929	16255929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SPEN	NM_015001	exon11	c.A3194G	p.D1065G	.	.	74	4	182	0	.	298
SRBD1	55133	bcgsc.ca	37	2	45800375	45800375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SRBD1	NM_018079	exon9	c.T1276C	p.C426R	.	.	67	4	204	0	.	90
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17719328	17719328	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SREBF1	NM_001005291	exon13	c.C2319T	p.S773S	.	.	57	21	106	0	.	91
SSR1	6745	bcgsc.ca	37	6	7295625	7295625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SSR1	NM_003144	exon7	c.A793G	p.N265D	.	.	44	4	92	0	.	90
SSRP1	6749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57100232	57100232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SSRP1	NM_003146	exon6	c.G635A	p.G212D	.	.	83	41	114	1	.	228
ST7-OT4	338069	bcgsc.ca	37	7	116599282	116599282	+	RNA	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	84	4	93	0	.	.
STAG3L2	442582	ucsc.edu	37	7	74298939	74298939	+	RNA	SNP	G	G	C	rs1637337	bycluster	TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	41	8	65	0	G|0.500;C|0.500	.
STAR	6770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38008314	38008314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STAR	NM_000349	exon1	c.T23C	p.L8P	.	.	21	9	56	1	.	91
STARD13	90627	bcgsc.ca	37	13	33703933	33703933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STARD13	NM_178006	exon5	c.A881G	p.E294G	.	.	58	5	110	0	.	94
STK11	6794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1221320	1221320	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	STK11,NS,carcinoma,+1	STK11	NM_000455	exon6	c.G843A	p.P281P	.	.	43	16	45	0	.	5227
STK38L	23012	bcgsc.ca	37	12	27467504	27467504	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STK38L	NM_015000	exon7	c.A585G	p.S195S	.	.	136	5	176	0	.	980
STX2	2054	bcgsc.ca	37	12	131311748	131311748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STX2	NM_194356	exon2	c.T95C	p.F32S	.	.	57	5	84	0	.	90
STXBP1	6812	bcgsc.ca	37	9	130413930	130413930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	STXBP1	NM_001032221	exon2	c.A86G	p.K29R	.	.	77	4	163	0	.	91
SYNE1	23345	bcgsc.ca	37	6	152651421	152651421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SYNE1	NM_182961	exon78	c.A14399G	p.E4800G	.	.	126	5	364	1	.	607
SYNE1	23345	bcgsc.ca	37	6	152771919	152771919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SYNE1	NM_033071	exon27	c.A3257G	p.Q1086R	.	.	102	5	156	1	.	607
SYNJ1	8867	bcgsc.ca	37	21	34030157	34030157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SYNJ1	NM_203446	exon19	c.A2447G	p.K816R	.	.	96	5	121	0	.	232
SYT8	90019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1856575	1856575	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	SYT8	NM_138567	exon3	c.C186A	p.L62L	.	.	34	13	38	0	.	91
TARS2	80222	ucsc.edu;bcgsc.ca	37	1	150470188	150470188	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TARS2	NM_025150	exon10	c.A1203G	p.T401T	.	.	42	4	65	0	.	91
TECPR1	25851	broad.mit.edu;bcgsc.ca	37	7	97851027	97851027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TECPR1	NM_015395	exon23	c.A3103G	p.R1035G	.	.	70	4	191	0	.	91
TERT	7015	bcgsc.ca	37	5	1278840	1278840	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TERT	NM_001193376	exon6	c.A2202G	p.K734K	.	.	126	5	192	1	.	1272
TLR3	7098	bcgsc.ca	37	4	187005837	187005837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TLR3	NM_003265	exon5	c.A2525G	p.Q842R	.	.	73	4	260	0	.	524
TOPORS	10210	bcgsc.ca	37	9	32542753	32542753	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TOPORS	NM_005802	exon3	c.A1770G	p.R590R	.	.	150	5	476	1	.	230
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	202245372	202245372	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRAK2	NM_015049	exon16	c.T2639A	p.L880X	.	.	127	52	189	0	.	90
TRIM15	89870	ucsc.edu;bcgsc.ca	37	6	30138279	30138279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRIM15	NM_033229	exon5	c.T733C	p.C245R	.	.	43	4	111	1	.	90
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142525018	142525018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TRPC1	NM_001251845	exon13	c.A2323G	p.I775V	.	.	219	95	256	0	.	92
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	45147977	45147977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TSC22D1	NM_183422	exon1	c.C2234T	p.P745L	.	.	88	34	119	0	.	90
TTC14	151613	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180320104	180320104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TTC14	NM_001042601	exon1	c.T55G	p.S19A	.	.	22	9	44	0	.	91
TTC24	164118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156552954	156552954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	TTC24	NM_001105669	exon4	c.G1031T	p.R344L	.	.	253	70	300	0	.	46
USP31	57478	bcgsc.ca	37	16	23119444	23119444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	USP31	NM_020718	exon2	c.T694C	p.F232L	.	.	66	4	253	0	.	663
UTRN	7402	bcgsc.ca	37	6	144860436	144860436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	UTRN	NM_007124	exon44	c.A6376G	p.T2126A	.	.	49	4	74	0	.	95
VANGL2	57216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160388964	160388964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VANGL2	NM_020335	exon4	c.C365T	p.T122M	.	.	66	17	48	0	.	91
VAV1	7409	bcgsc.ca	37	19	6825322	6825322	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VAV1	NM_005428	exon8	c.T732C	p.L244L	.	.	50	4	97	1	.	1276
VEZF1	7716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56052168	56052168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VEZF1	NM_007146	exon6	c.C1232G	p.T411S	.	.	176	74	268	0	.	136
VWA3B	200403	bcgsc.ca	37	2	98810909	98810909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	VWA3B	NM_144992	exon12	c.A1691G	p.N564S	.	.	53	4	83	0	.	139
VWC2L	402117	bcgsc.ca	37	2	215440536	215440536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_001080500	exon4	c.A661G	p.T221A	.	.	65	4	134	0	.	.
WDR37	22884	bcgsc.ca	37	10	1123935	1123935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	WDR37	NM_014023	exon3	c.A227G	p.N76S	.	.	72	4	117	1	.	90
WFDC3	140686	bcgsc.ca	37	20	44404162	44404162	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	WFDC3	NM_080614	exon6	c.A573G	p.G191G	.	.	148	5	242	4	.	90
XBP1	7494	bcgsc.ca	37	22	29191279	29191279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	XBP1	NM_001079539	exon6	c.T1015C	p.C339R	.	.	71	4	150	0	.	290
ZAN	7455	bcgsc.ca	37	7	100389690	100389690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZAN	.	.	.	.	.	.	66	4	134	0	.	142
ZBTB11	27107	bcgsc.ca	37	3	101374982	101374982	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZBTB11	NM_014415	exon7	c.A2157G	p.K719K	.	.	85	4	316	0	.	91
ZFP37	7539	bcgsc.ca	37	9	115806040	115806040	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZFP37	NM_003408	exon4	c.T858C	p.P286P	.	.	112	4	271	0	.	92
ZNF221	7638	bcgsc.ca	37	19	44470808	44470808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF221	NM_013359	exon6	c.A1154G	p.Q385R	.	.	64	4	131	0	.	91
ZNF28	7576	bcgsc.ca	37	19	53304849	53304849	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF28	NM_006969	exon4	c.A249G	p.G83G	.	.	62	4	375	0	.	91
ZNF302	55900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35174079	35174079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_018443	exon4	c.A150G	p.P50P	.	.	108	44	181	0	.	.
ZNF343	79175	bcgsc.ca	37	20	2463953	2463953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF343	NM_024325	exon6	c.A1654G	p.S552G	.	.	79	4	169	2	.	92
ZNF534	147658	bcgsc.ca	37	19	52938347	52938347	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF534	NM_001143939	exon3	c.T195C	p.P65P	.	.	112	5	375	0	.	68
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22364225	22364225	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF676	NM_001001411	exon3	c.294delT	p.Y98X	.	.	171	78	465	0	.	90
ZNF683	257101	broad.mit.edu;bcgsc.ca	37	1	26694190	26694190	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	NM_173574	exon3	c.T213C	p.S71S	.	.	55	4	162	0	.	.
ZNF80	7634	bcgsc.ca	37	3	113955486	113955486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF80	NM_007136	exon1	c.T436C	p.S146P	.	.	76	5	154	0	.	90
ZNF836	162962	bcgsc.ca	37	19	52658360	52658360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZNF836	NM_001102657	exon5	c.A2576G	p.E859G	.	.	148	5	270	0	.	46
ZZEF1	23140	bcgsc.ca	37	17	3916877	3916877	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	ZZEF1	NM_015113	exon52	c.A8445G	p.E2815E	.	.	66	4	127	0	.	93
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227627	74227628	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	p.T432L	.	.	.	.	.	.	.	
RP11-764K9.4	0	bcgsc.ca	37	9	68437756	68437757	+	RNA	DNP	GA	GA	TT	novel		TCGA-DD-A11B-01A-11D-A16Z-10	TCGA-DD-A11B-10A-01D-A12Z-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d14550e-9553-417f-8e23-2ef97d22c96f	10979b91-1258-4439-954b-14d3e99d3b0f	.	.	.	.	.	.	.	.	.	.	.	.	.	
