Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	bcgsc.ca	37	1	94528810	94528810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ABCA4	NM_000350	exon12	c.T1618C	p.S540P	.	.	139	6	174	0	.	162
ABCA9	10350	bcgsc.ca	37	17	67039640	67039640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ABCA9	NM_080283	exon6	c.T790C	p.S264P	.	.	93	4	83	0	.	95
ABCB6	10058	bcgsc.ca	37	2	220078658	220078658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ABCB6	NM_005689	exon9	c.T1468C	p.S490P	.	.	127	5	117	0	.	153
ABHD12	26090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25287496	25287496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ABHD12	NM_001042472	exon10	c.G923C	p.S308T	.	.	84	11	101	1	.	91
ACTA1	58	bcgsc.ca	37	1	229568470	229568470	+	Missense_Mutation	SNP	A	A	G	rs121909519		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ACTA1	NM_001100	exon3	c.T287C	p.L96P	.	.	167	5	139	0	.	90
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150531572	150531572	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ADAMTSL4	NM_019032	exon16	c.T2694C	p.P898P	.	.	90	45	71	0	.	92
AKR1C1	1645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	5005692	5005692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AKR1C1	NM_001353	exon1	c.T56G	p.L19R	.	.	180	16	221	0	.	516
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74283866	74283866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ALB	NM_000477	exon12	c.T1490A	p.V497D	.	.	104	24	90	0	.	96
ALG13	79868	bcgsc.ca	37	X	110987996	110987996	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ALG13	NM_001099922	exon24	c.A2796T	p.P932P	.	.	31	4	26	0	.	130
ANKHD1	54882	broad.mit.edu;mdanderson.org	37	5	139876827	139876827	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ANKHD1	NM_017747	exon15	c.C2968T	p.Q990X	.	.	46	11	27	0	.	185
AP2A1	160	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50302173	50302173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AP2A1	NM_130787	exon8	c.T929G	p.L310R	.	.	90	16	102	0	.	92
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50302171	50302171	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AP2A1	NM_130787	exon8	c.C927T	p.I309I	.	.	90	17	104	0	.	92
APPL1	26060	broad.mit.edu;bcgsc.ca	37	3	57276130	57276130	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	APPL1	NM_012096	exon6	c.A375G	p.E125E	.	.	279	9	292	0	.	153
AQPEP	0	broad.mit.edu;bcgsc.ca	37	5	115327955	115327955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_173800	exon5	c.C1241T	p.S414F	.	.	123	6	116	0	.	.
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94652058	94652058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ARHGAP29	NM_004815	exon16	c.A1777C	p.T593P	.	.	108	16	146	0	.	296
ARMC2	84071	bcgsc.ca	37	6	109190047	109190047	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ARMC2	NM_032131	exon4	c.T312C	p.S104S	.	.	72	4	81	0	.	68
ASCC3	10973	bcgsc.ca	37	6	100957882	100957882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ASCC3	NM_006828	exon41	c.T6387C	p.A2129A	.	.	125	5	181	0	.	96
ASIC1	41	bcgsc.ca	37	12	50474293	50474293	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001256830	exon7	c.G1320A	p.L440L	.	.	80	4	90	0	.	.
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99030913	99030913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001198879	exon4	c.C729G	p.N243K	.	.	81	34	78	0	.	.
ATP8B4	79895	ucsc.edu;bcgsc.ca	37	15	50271815	50271815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ATP8B4	NM_024837	exon12	c.A1033G	p.S345G	.	.	52	4	36	0	.	140
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160194151	160194151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	BAZ2B	NM_013450	exon32	c.G5587C	p.E1863Q	.	.	185	28	169	0	.	94
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	23793427	23793427	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001199864	exon8	c.C891T	p.T297T	.	.	88	9	104	0	.	.
BSPRY	54836	bcgsc.ca	37	9	116132193	116132193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	BSPRY	NM_017688	exon6	c.T980C	p.F327S	.	.	64	4	89	0	.	135
C6orf62	81688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24714631	24714631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	C6orf62	NM_030939	exon3	c.T344G	p.L115R	.	.	143	29	187	0	.	90
CATSPERB	79820	bcgsc.ca	37	14	92136291	92136291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CATSPERB	NM_024764	exon14	c.T1154C	p.V385A	.	.	105	4	142	0	.	138
CCDC30	728621	bcgsc.ca	37	1	43076658	43076658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CCDC30	NM_001080850	exon10	c.A1393G	p.S465G	.	.	113	5	99	0	.	90
CCDC39	339829	bcgsc.ca	37	3	180366145	180366145	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CCDC39	NM_181426	exon10	c.A1170G	p.E390E	.	.	86	4	77	0	.	72
CCP110	9738	bcgsc.ca	37	16	19548499	19548499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CCP110	NM_001199022	exon4	c.A1508G	p.K503R	.	.	112	7	116	1	.	90
CDK9	1025	bcgsc.ca	37	9	130551809	130551809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CDK9	NM_001261	exon7	c.A1106G	p.E369G	.	.	63	5	57	0	.	521
CLEC19A	728276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19310149	19310149	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001256720	exon2	c.C243T	p.A81A	.	.	94	25	88	0	.	.
CLEC6A	93978	bcgsc.ca	37	12	8608732	8608732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CLEC6A	NM_001007033	exon1	c.A25G	p.S9G	.	.	66	4	65	0	.	135
CNTN6	27255	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	1371498	1371498	+	Missense_Mutation	SNP	G	G	A	rs142802849		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CNTN6	NM_014461	exon11	c.G1243A	p.V415I	.	.	312	80	341	1	G|1.000;A|0.000	345
CNTNAP2	26047	broad.mit.edu	37	7	146741026	146741026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CNTNAP2	NM_014141	exon4	c.G430A	p.G144S	.	.	315	6	306	0	.	100
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51095517	51095517	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	COBL	NM_015198	exon10	c.G3276A	p.K1092K	.	.	346	114	397	1	.	95
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7571282	7571282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	COL28A1	NM_001037763	exon3	c.A378T	p.L126F	.	.	168	59	106	0	.	93
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	6177	6177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	ENST00000361624	exon1	c.A274T	p.M92L	.	.	794	59	1196	0	.	.
CTTNBP2	83992	bcgsc.ca	37	7	117364743	117364743	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CTTNBP2	NM_033427	exon19	c.T4305C	p.P1435P	.	.	95	4	84	0	.	94
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41600227	41600227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CYP2A13	NM_000766	exon7	c.T1051C	p.Y351H	.	.	212	39	215	0	.	93
DARS2	55157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173825830	173825830	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DARS2	NM_018122	exon16	c.G1701A	p.L567L	.	.	107	8	58	0	.	90
DBT	1629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100672083	100672083	+	Missense_Mutation	SNP	C	C	T	rs150934375		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DBT	NM_001918	exon9	c.G1127A	p.R376H	.	.	84	24	87	0	C|1.000;T|0.000	91
DCLRE1A	9937	broad.mit.edu;bcgsc.ca	37	10	115609611	115609611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DCLRE1A	NM_014881	exon2	c.T1253C	p.L418P	.	.	110	7	86	0	.	228
DESI1	27351	bcgsc.ca	37	22	41999359	41999359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_015704	exon5	c.A317G	p.H106R	.	.	140	5	136	0	.	.
DMXL2	23312	bcgsc.ca	37	15	51828379	51828379	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DMXL2	NM_001174117	exon12	c.T2298C	p.I766I	.	.	144	5	133	0	.	99
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6559930	6559930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DNHD1	NM_144666	exon16	c.T3215C	p.V1072A	.	.	40	4	58	0	.	24
DNM1L	10059	bcgsc.ca	37	12	32890050	32890050	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DNM1L	NM_012062	exon14	c.A1551G	p.R517R	.	.	89	5	88	0	.	92
DSG1	1828	broad.mit.edu	37	18	28934747	28934747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DSG1	NM_001942	exon15	c.T2588C	p.V863A	.	.	137	5	132	0	.	519
DZIP3	9666	bcgsc.ca	37	3	108363544	108363544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DZIP3	NM_014648	exon14	c.T1675C	p.S559P	.	.	75	5	81	0	.	91
EML4	27436	bcgsc.ca	37	2	42556036	42556036	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	EML4	NM_019063	exon22	c.A2352G	p.P784P	.	.	95	5	64	0	.	3734
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128426289	128426289	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ETS1	NM_001143820	exon3	c.C111G	p.N37K	.	.	164	38	147	0	.	1270
ETS2	2114	bcgsc.ca	37	21	40188953	40188953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ETS2	NM_001256295	exon7	c.A947G	p.D316G	.	.	60	4	71	0	.	849
F8	2157	broad.mit.edu	37	X	154157108	154157108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	F8	NM_000132	exon14	c.A4957G	p.R1653G	.	.	444	7	254	1	.	182
FAM222B	55731	bcgsc.ca	37	17	27093635	27093635	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_018182	exon3	c.T51C	p.S17S	.	.	51	4	51	0	.	.
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187541970	187541970	+	Missense_Mutation	SNP	C	C	T	rs189271562		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT1	NM_005245	exon10	c.G5770A	p.G1924R	.	.	170	18	215	0	C|0.999;T|0.000	34
FAT3	120114	bcgsc.ca	37	11	92088305	92088305	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon1	c.T3027C	p.T1009T	.	.	171	6	183	0	.	73
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92613908	92613908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon22	c.A12139T	p.T4047S	.	.	74	11	74	1	.	73
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92534030	92534030	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon9	c.C7851T	p.H2617H	.	.	58	12	77	0	.	73
FCHSD1	89848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141028756	141028756	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FCHSD1	NM_033449	exon6	c.G495A	p.A165A	.	.	95	28	69	0	.	230
FDPS	2224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155289686	155289686	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FDPS	NM_001135821	exon10	c.A1026G	p.Q342Q	.	.	229	133	158	1	.	90
FES	2242	broad.mit.edu;mdanderson.org	37	15	91433348	91433348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FES	NM_001143784	exon8	c.T1076C	p.V359A	.	.	16	4	18	0	.	546
FFAR4	338557	bcgsc.ca	37	10	95347100	95347100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_181745	exon4	c.T868C	p.F290L	.	.	169	5	203	0	.	.
FGF6	2251	broad.mit.edu;bcgsc.ca	37	12	4554706	4554706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FGF6	NM_020996	exon1	c.A31G	p.M11V	.	.	24	7	30	0	.	659
FLNA	2316	bcgsc.ca	37	X	153590659	153590659	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FLNA	NM_001456	exon18	c.T2607C	p.S869S	.	.	86	4	60	0	.	599
G3BP2	9908	bcgsc.ca	37	4	76579209	76579209	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	G3BP2	NM_012297	exon8	c.T783C	p.S261S	.	.	87	4	103	0	.	153
GAB1	2549	broad.mit.edu;bcgsc.ca	37	4	144354861	144354861	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GAB1	NM_207123	exon3	c.A585G	p.E195E	.	.	115	5	102	0	.	1146
GFOD1	54438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13365402	13365402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GFOD1	NM_018988	exon2	c.T746C	p.V249A	.	.	38	10	38	0	.	92
GNB5	10681	bcgsc.ca	37	15	52416703	52416703	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GNB5	NM_016194	exon12	c.T1143C	p.A381A	.	.	80	4	80	0	.	227
GNPAT	8443	bcgsc.ca	37	1	231403634	231403634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GNPAT	NM_014236	exon9	c.T1264C	p.F422L	.	.	187	5	115	1	.	156
GZMB	3002	bcgsc.ca	37	14	25101250	25101250	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GZMB	NM_004131	exon4	c.A414G	p.P138P	.	.	97	4	99	0	.	514
H3F3B	3021	bcgsc.ca	37	17	73775246	73775246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	H3F3B	NM_005324	exon2	c.A10G	p.T4A	.	.	73	5	99	1	.	523
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	122641077	122641077	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HAS2	NM_005328	exon2	c.G504A	p.S168S	.	.	307	174	128	0	.	236
HEATR3	55027	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50134209	50134209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HEATR3	NM_182922	exon13	c.A1668C	p.R556S	.	.	67	9	64	0	.	92
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152185637	152185637	+	Missense_Mutation	SNP	C	C	A	rs150101773	byfrequency;alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HRNR	NM_001009931	exon3	c.G8468T	p.S2823I	.	.	551	54	358	0	C|1.000;T|0.000	93
IL1RAPL1	11141	bcgsc.ca	37	X	29973712	29973712	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	IL1RAPL1	NM_014271	exon11	c.A1866G	p.K622K	.	.	83	4	55	0	.	134
IMPA2	3613	broad.mit.edu	37	18	12014348	12014348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	IMPA2	NM_014214	exon5	c.C466T	p.R156W	.	.	47	3	48	0	.	226
INO80B	83444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74683301	74683301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	INO80B	NM_031288	exon4	c.G442A	p.E148K	.	.	257	19	240	0	.	226
IVL	3713	bcgsc.ca	37	1	152883056	152883056	+	Silent	SNP	A	A	G	rs45609438	byfrequency	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	IVL	NM_005547	exon2	c.A783G	p.G261G	.	.	226	23	161	5	A|0.697;G|0.303	93
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128247508	128247508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	IWS1	NM_017969	exon11	c.A2059T	p.R687W	.	.	391	50	357	0	.	91
KCNK4	50801	bcgsc.ca	37	11	64060603	64060603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KCNK4	NM_033310	exon2	c.A113G	p.E38G	.	.	69	4	69	0	.	90
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	2869140	2869140	+	Silent	SNP	C	C	T	rs184844767		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KCNQ1	NM_000218	exon16	c.C1938T	p.G646G	.	.	45	9	45	0	A|0.002;C|0.998	515
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	86691306	86691306	+	Missense_Mutation	SNP	C	C	T	rs200618359		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KDM3A	NM_001146688	exon9	c.C974T	p.S325F	.	.	198	59	150	0	C|0.999;T|0.000	291
KIAA1217	56243	ucsc.edu;bcgsc.ca	37	10	24669888	24669888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KIAA1217	NM_019590	exon3	c.G445C	p.E149Q	.	.	39	6	44	0	.	98
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	90189142	90189142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KIF7	NM_198525	exon8	c.G1904A	p.R635Q	.	.	36	5	48	0	.	523
KLHL10	317719	bcgsc.ca	37	17	40001531	40001531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLHL10	NM_152467	exon3	c.A838G	p.T280A	.	.	132	5	121	0	.	227
KLHL30	377007	broad.mit.edu;bcgsc.ca	37	2	239049561	239049561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLHL30	NM_198582	exon2	c.C166T	p.P56S	.	.	66	4	77	0	.	22
KLK3	354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51361569	51361569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLK3	NM_001030047	exon3	c.A491G	p.E164G	.	.	40	5	41	0	.	228
KLK9	284366	broad.mit.edu;bcgsc.ca	37	19	51507094	51507094	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLK9	NM_012315	exon4	c.C469T	p.L157L	.	.	87	6	76	0	.	226
KRIT1	889	bcgsc.ca	37	7	91855952	91855952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KRIT1	NM_194456	exon12	c.A1034G	p.K345R	.	.	255	7	202	1	.	132
KRT86	3892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52699951	52699951	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KRT86	NM_002284	exon7	c.C1134A	p.A378A	.	.	139	34	124	1	.	91
LINC00521	256369	ucsc.edu;bcgsc.ca	37	14	94469603	94469603	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	.	.	.	.	.	.	32	4	47	0	.	.
LINS	55180	bcgsc.ca	37	15	101115205	101115205	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LINS	NM_001040616	exon4	c.T618C	p.C206C	.	.	97	5	110	0	.	92
LOC388692	0	ucsc.edu	37	1	149284132	149284132	+	RNA	SNP	C	C	G	rs61789486	byfrequency	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	.	.	.	.	.	.	13	6	13	0	C|0.500;G|0.500	.
LOC388692	0	ucsc.edu	37	1	149284137	149284137	+	RNA	SNP	G	G	A	rs77226298		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	.	.	.	.	.	.	12	5	13	0	.	.
LOC643387	0	bcgsc.ca	37	2	239140856	239140856	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	.	.	.	.	.	.	173	6	170	0	.	.
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40400289	40400289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LRFN2	NM_020737	exon2	c.C564T	p.I188I	.	.	76	13	101	0	.	93
LY9	4063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160769681	160769681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LY9	NM_001261457	exon2	c.C263A	p.A88D	.	.	200	13	113	0	.	91
MAGED2	10916	bcgsc.ca	37	X	54841764	54841764	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MAGED2	NM_201222	exon12	c.A1470G	p.A490A	.	.	52	4	61	0	.	195
MAML2	84441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	96074699	96074699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MAML2	NM_032427	exon1	c.A361G	p.T121A	.	.	154	23	137	1	.	850
MDN1	23195	bcgsc.ca	37	6	90432718	90432718	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MDN1	NM_014611	exon40	c.T5923C	p.L1975L	.	.	61	4	76	0	.	100
MGC45800	0	broad.mit.edu;ucsc.edu	37	4	183063609	183063609	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	.	.	.	.	.	.	141	20	129	0	.	.
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129901194	129901194	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MKI67	NM_002417	exon13	c.C8910T	p.P2970P	.	.	98	26	88	0	.	519
MLLT6	4302	bcgsc.ca	37	17	36876910	36876910	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MLLT6	NM_005937	exon16	c.2354-2A>G	.	.	.	48	4	63	0	.	659
MMGT1	93380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135049612	135049612	+	Missense_Mutation	SNP	T	T	C	rs199809391		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MMGT1	NM_173470	exon3	c.A173G	p.Y58C	.	.	210	102	181	0	.	130
MMGT1	93380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135049605	135049605	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MMGT1	NM_173470	exon3	c.A180C	p.I60I	.	.	220	106	193	0	.	130
MORF4L1	10933	bcgsc.ca	37	15	79185884	79185884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MORF4L1	NM_206839	exon10	c.T661C	p.F221L	.	.	331	8	333	1	.	90
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47707967	47707993	+	In_Frame_Del	DEL	ATATCATGGAACCAGCAGCAAAGAAGT	ATATCATGGAACCAGCAGCAAAGAAGT	-	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	ATATCATGGAACCAGCAGCAAAGAAGT	ATATCATGGAACCAGCAGCAAAGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MSH2	NM_000251	exon15	c.2591_2617del	p.864_873del	.	.	151	18	184	0	.	2445
MYBPHL	343263	bcgsc.ca	37	1	109840789	109840789	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MYBPHL	NM_001265613	exon3	c.234+2T>C	.	.	.	80	4	79	0	.	92
MYH2	4620	broad.mit.edu	37	17	10441026	10441026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MYH2	NM_017534	exon15	c.G1543A	p.D515N	.	.	164	5	201	0	.	194
MYO1E	4643	broad.mit.edu	37	15	59455465	59455465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MYO1E	NM_004998	exon23	c.G2518A	p.E840K	.	.	75	5	84	1	.	514
NBEAL2	23218	bcgsc.ca	37	3	47049101	47049101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NBEAL2	NM_015175	exon48	c.T7421C	p.L2474P	.	.	125	5	114	0	.	69
NBPF10	100132406	bcgsc.ca	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	byfrequency	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001039703	exon3	c.C325T	p.L109L	.	.	274	14	169	0	C|0.959;T|0.041	.
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50185782	50185782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NCKAP5L	NM_001037806	exon13	c.C3845T	p.T1282M	.	.	65	19	38	0	.	68
ND4L	0	broad.mit.edu;bcgsc.ca	37	MT	10635	10635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	ENST00000361335	exon1	c.G166A	p.A56T	.	.	1001	56	1292	0	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12677	12677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	ENST00000361567	exon1	c.T341C	p.I114T	.	.	947	144	1353	0	.	.
NELL2	4753	ucsc.edu;bcgsc.ca	37	12	45270410	45270410	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NELL2	NM_001145107	exon1	c.A99G	p.R33R	.	.	42	4	34	0	.	517
NFATC2IP	84901	bcgsc.ca	37	16	28967330	28967330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NFATC2IP	NM_032815	exon4	c.T610C	p.S204P	.	.	53	4	39	0	.	91
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149357349	149357349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NR3C2	NM_001166104	exon2	c.A664T	p.S222C	.	.	68	13	60	0	.	154
NR4A1	3164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52448249	52448249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NR4A1	NM_001202233	exon3	c.C176T	p.A59V	.	.	56	7	74	0	.	186
NT5C	30833	bcgsc.ca	37	17	73126889	73126889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NT5C	NM_014595	exon4	c.T410C	p.V137A	.	.	61	4	67	0	.	90
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	205290713	205290713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NUAK2	NM_030952	exon1	c.C44T	p.S15L	.	.	81	21	55	0	.	391
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53617269	53617269	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OLFM4	NM_006418	exon4	c.G600A	p.K200K	.	.	119	13	104	0	.	69
OR10K2	391107	broad.mit.edu	37	1	158390546	158390546	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OR10K2	NM_001004476	exon1	c.C111T	p.F37F	.	.	434	7	285	0	.	69
OR2A7	401427	broad.mit.edu	37	7	143956048	143956048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OR2A7	NM_001005328	exon1	c.T674C	p.L225P	.	.	2323	15	1816	1	.	23
OR8A1	390275	bcgsc.ca	37	11	124440073	124440073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OR8A1	NM_001005194	exon1	c.A109G	p.R37G	.	.	91	4	96	0	.	69
OTX1	5013	bcgsc.ca	37	2	63281311	63281311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OTX1	NM_014562	exon4	c.A227G	p.N76S	.	.	59	4	73	0	.	70
PAK1	5058	bcgsc.ca	37	11	77103440	77103440	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PAK1	NM_001128620	exon2	c.T126C	p.P42P	.	.	184	5	191	0	.	957
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99662112	99662112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCDH19	NM_001184880	exon1	c.C1484T	p.S495L	.	.	101	47	94	0	.	110
PCDH9	5101	broad.mit.edu;bcgsc.ca	37	13	67799656	67799656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCDH9	NM_203487	exon2	c.T2917C	p.F973L	.	.	169	6	135	0	.	96
PCDHB8	56128	broad.mit.edu	37	5	140559074	140559074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCDHB8	NM_019120	exon1	c.G1459A	p.V487I	.	.	214	6	139	0	.	131
PCLO	27445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82595462	82595462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCLO	NM_014510	exon4	c.C3642T	p.L1214L	.	.	843	325	785	2	.	29
PDE6B	5158	broad.mit.edu;bcgsc.ca	37	4	619437	619437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PDE6B	NM_001145291	exon1	c.G22T	p.A8S	.	.	104	9	134	0	.	90
PDZD2	23037	broad.mit.edu	37	5	31799777	31799777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PDZD2	NM_178140	exon1	c.A422G	p.E141G	.	.	297	7	200	0	.	563
PHKG1	5260	bcgsc.ca	37	7	56150972	56150972	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PHKG1	NM_001258459	exon7	c.A642G	p.R214R	.	.	82	5	97	0	.	424
PHRF1	57661	ucsc.edu	37	11	608842	608842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PHRF1	NM_020901	exon14	c.T3383C	p.L1128P	.	.	37	4	64	0	.	22
PIK3R4	30849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130447469	130447469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PIK3R4	NM_014602	exon6	c.G1645C	p.E549Q	.	.	252	29	301	1	.	1471
PIWIL4	143689	bcgsc.ca	37	11	94320331	94320331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PIWIL4	NM_152431	exon7	c.A832G	p.T278A	.	.	101	5	162	0	.	91
PLCD4	84812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219501200	219501200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLCD4	NM_032726	exon16	c.G2189A	p.R730H	.	.	112	31	117	0	.	661
PLEKHH1	57475	broad.mit.edu;mdanderson.org	37	14	68038988	68038988	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLEKHH1	NM_020715	exon11	c.G1722A	p.L574L	.	.	11	4	17	0	.	22
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129286593	129286593	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLXND1	NM_015103	exon21	c.G3921T	p.T1307T	.	.	35	5	64	0	.	90
PPP1R12A	4659	bcgsc.ca	37	12	80266590	80266590	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PPP1R12A	NM_002480	exon2	c.A366G	p.A122A	.	.	85	5	118	0	.	273
PRDM4	11108	bcgsc.ca	37	12	108133250	108133250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRDM4	NM_012406	exon11	c.A2003G	p.H668R	.	.	125	5	142	0	.	154
PREB	10113	bcgsc.ca	37	2	27357175	27357175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PREB	NM_013388	exon1	c.A115G	p.T39A	.	.	69	4	74	0	.	91
PRKAG2	51422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151262925	151262925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRKAG2	NM_016203	exon12	c.A1280G	p.E427G	.	.	411	150	375	2	.	658
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1564062	1564062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRPF8	NM_006445	exon29	c.G4568T	p.R1523L	.	.	128	22	112	0	.	525
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120021723	120021723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRR16	NM_016644	exon3	c.C165A	p.D55E	.	.	97	24	71	0	.	71
PRRC2A	7916	bcgsc.ca	37	6	31602092	31602092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRRC2A	NM_004638	exon19	c.A4799G	p.D1600G	.	.	126	6	182	0	.	156
PSMD1	5707	bcgsc.ca	37	2	232011036	232011036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PSMD1	NM_002807	exon18	c.T2081C	p.I694T	.	.	74	4	82	0	.	92
PTPRJ	5795	bcgsc.ca	37	11	48142595	48142595	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PTPRJ	NM_001098503	exon4	c.T393C	p.S131S	.	.	120	6	132	1	.	541
PZP	5858	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9344850	9344850	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PZP	NM_002864	exon13	c.C1485A	p.I495I	.	.	90	7	77	0	.	157
RAD51C	5889	bcgsc.ca	37	17	56780687	56780687	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RAD51C	NM_058216	exon4	c.A702G	p.S234S	.	.	75	4	79	0	.	637
RADIL	55698	bcgsc.ca	37	7	4841581	4841581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RADIL	NM_018059	exon12	c.T2545C	p.C849R	.	.	58	4	55	0	.	994
RBFOX2	23543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36164375	36164375	+	Missense_Mutation	SNP	C	C	T	rs199852787	alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RBFOX2	NM_001082578	exon6	c.G685A	p.E229K	.	.	90	8	111	0	C|0.999;G|0.000	90
RBPJL	11317	broad.mit.edu	37	20	43945197	43945197	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RBPJL	NM_014276	exon11	c.C1257T	p.D419D	.	.	256	7	279	1	.	227
RFWD3	55159	bcgsc.ca	37	16	74685913	74685913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RFWD3	NM_018124	exon3	c.A626G	p.Q209R	.	.	69	4	79	0	.	522
RGPD3	653489	broad.mit.edu	37	2	107049725	107049725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RGPD3	NM_001144013	exon16	c.A2222T	p.E741V	.	.	833	23	815	0	.	23
RLTPR	146206	broad.mit.edu	37	16	67682065	67682065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RLTPR	NM_001013838	exon14	c.C1182T	p.T394T	.	.	59	3	55	1	.	67
RNF144B	255488	bcgsc.ca	37	6	18439971	18439971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RNF144B	NM_182757	exon4	c.A327C	p.E109D	.	.	269	9	373	0	.	226
RTN3	10313	bcgsc.ca	37	11	63488332	63488332	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RTN3	NM_001265589	exon3	c.A2358G	p.P786P	.	.	66	4	87	0	.	91
RYK	6259	bcgsc.ca	37	3	133907746	133907746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RYK	.	.	.	.	.	.	89	4	117	0	.	1379
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237893654	237893654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RYR2	NM_001035	exon77	c.G10933A	p.A3645T	.	.	144	17	91	0	.	158
S100PBP	64766	bcgsc.ca	37	1	33291743	33291743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	S100PBP	NM_022753	exon3	c.T43C	p.S15P	.	.	153	6	174	1	.	90
SACS	26278	broad.mit.edu;bcgsc.ca	37	13	23915816	23915816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SACS	NM_014363	exon10	c.T2199C	p.T733T	.	.	80	5	67	0	.	298
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51173341	51173341	+	Missense_Mutation	SNP	G	G	T	rs140924793	alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SALL1	NM_002968	exon2	c.C2792A	p.P931Q	.	.	125	5	122	0	G|1.000;A|0.000	98
SEMA4A	64218	bcgsc.ca	37	1	156126268	156126268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SEMA4A	NM_001193300	exon3	c.T203C	p.L68P	.	.	153	5	135	0	.	228
SHROOM4	57477	bcgsc.ca	37	X	50351080	50351080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SHROOM4	NM_020717	exon6	c.T3062C	p.L1021P	.	.	155	6	155	0	.	131
SI	6476	bcgsc.ca	37	3	164724668	164724668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SI	NM_001041	exon37	c.A4342G	p.T1448A	.	.	248	6	281	0	.	104
SIRPD	128646	bcgsc.ca	37	20	1517878	1517878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SIRPD	NM_178460	exon3	c.T500C	p.L167P	.	.	229	7	249	0	.	227
SLX4	84464	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3634828	3634828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SLX4	NM_032444	exon13	c.A4681G	p.T1561A	.	.	80	13	87	0	.	94
SNRPB	6628	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2443295	2443295	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SNRPB	NM_003091	exon6	c.C672G	p.P224P	.	.	86	10	114	0	.	227
SOGA3	387104	bcgsc.ca	37	6	127804073	127804073	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001012279	exon5	c.A1542G	p.Q514Q	.	.	238	6	233	0	.	.
SOWAHA	134548	bcgsc.ca	37	5	132150925	132150925	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_175873	exon1	c.T1612C	p.L538L	.	.	142	5	78	0	.	.
SRXN1	140809	bcgsc.ca	37	20	629414	629414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SRXN1	NM_080725	exon2	c.T358C	p.S120P	.	.	87	4	95	1	.	91
SSH3	54961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67077797	67077797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SSH3	NM_017857	exon13	c.G1670T	p.S557I	.	.	74	15	80	0	.	91
SSPO	23145	broad.mit.edu	37	7	149504027	149504027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_198455	exon60	c.G8851T	p.G2951W	.	.	54	5	43	0	.	.
SUPT6H	6830	bcgsc.ca	37	17	27022464	27022464	+	Missense_Mutation	SNP	A	A	G	rs139227232		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SUPT6H	NM_003170	exon29	c.A3869G	p.N1290S	.	.	94	4	94	0	A|1.000;G|0.000	93
SYNE1	23345	bcgsc.ca	37	6	152652030	152652030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SYNE1	NM_182961	exon78	c.A13790G	p.E4597G	.	.	163	5	182	0	.	607
TAS2R46	259292	bcgsc.ca	37	12	11214788	11214788	+	Missense_Mutation	SNP	A	A	C	rs2598002		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.T106G	p.F36V	.	.	331	23	327	1	.	1
TAS2R46	259292	hgsc.bcm.edu	37	12	11214720	11214720	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.A174G	p.L58L	.	.	297	19	279	0	.	1
TAS2R46	259292	hgsc.bcm.edu	37	12	11214756	11214756	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.A138G	p.Q46Q	.	.	343	20	308	0	.	1
TAS2R46	259292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11214459	11214459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.T435G	p.F145L	.	.	275	13	256	0	.	1
TAS2R46	259292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11214707	11214707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.G187T	p.V63L	.	.	280	20	236	0	.	1
TDRD12	91646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33233749	33233749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001110822	exon4	c.A383G	p.Y128C	.	.	209	39	210	0	.	.
TRAPPC10	7109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45506772	45506772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TRAPPC10	NM_003274	exon16	c.A2470T	p.S824C	.	.	90	13	86	1	.	92
TRAPPC8	22878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29450417	29450417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TRAPPC8	NM_014939	exon16	c.T2306C	p.L769P	.	.	278	32	248	1	.	159
TRIM68	55128	bcgsc.ca	37	11	4621539	4621539	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TRIM68	NM_018073	exon7	c.T1425C	p.P475P	.	.	123	5	131	1	.	91
TTC26	79989	bcgsc.ca	37	7	138849972	138849972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TTC26	NM_001144920	exon9	c.T887C	p.L296P	.	.	162	5	139	0	.	91
TTF2	8458	ucsc.edu;bcgsc.ca	37	1	117644071	117644071	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TTF2	NM_003594	exon23	c.A3414G	p.K1138K	.	.	33	4	24	0	.	91
UBR5	51366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	103269936	103269936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	UBR5	NM_015902	exon58	c.C8111T	p.A2704V	.	.	150	12	54	0	.	761
UGT8	7368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115597188	115597188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	UGT8	NM_003360	exon5	c.C1370T	p.A457V	.	.	360	98	320	1	.	92
ULK2	9706	bcgsc.ca	37	17	19684348	19684348	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ULK2	NM_001142610	exon24	c.A2709G	p.K903K	.	.	95	5	108	0	.	334
USO1	8615	broad.mit.edu	37	4	76695869	76695869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USO1	.	.	.	.	.	.	188	4	160	0	.	25
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144107245	144107245	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP38	NM_032557	exon1	c.G642A	p.L214L	.	.	126	33	124	0	.	660
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6974387	6974387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP5	NM_001098536	exon19	c.G2458A	p.V820I	.	.	131	13	114	0	.	659
USP9Y	8287	broad.mit.edu	37	Y	14837140	14837140	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP9Y	NM_004654	exon6	c.C420T	p.G140G	.	.	242	5	316	0	.	136
VPS13B	157680	broad.mit.edu	37	8	100712118	100712118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	VPS13B	NM_017890	exon36	c.C6487G	p.L2163V	.	.	296	6	151	0	.	301
VPS13D	55187	bcgsc.ca	37	1	12381891	12381891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	VPS13D	NM_015378	exon33	c.A7574G	p.E2525G	.	.	135	5	175	0	.	95
VWA5A	4013	broad.mit.edu	37	11	124012397	124012397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	VWA5A	NM_014622	exon15	c.G1972A	p.D658N	.	.	130	7	138	1	.	92
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44181869	44181869	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	WFDC8	NM_181510	exon5	c.G492A	p.E164E	.	.	91	9	108	0	.	90
WHAMM	123720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83491939	83491939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001080435	exon6	c.A1358G	p.D453G	.	.	230	45	295	0	.	.
WRAP73	49856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3548777	3548777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	WRAP73	NM_017818	exon10	c.G1048A	p.D350N	.	.	110	18	86	0	.	90
XRCC6	2547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42042966	42042966	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	XRCC6	NM_001469	exon7	c.T840A	p.A280A	.	.	153	47	137	0	.	661
ZDHHC8	29801	ucsc.edu	37	22	20131227	20131227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZDHHC8	NM_001185024	exon10	c.G2074A	p.A692T	.	.	51	4	80	0	.	91
ZNF136	7695	bcgsc.ca	37	19	12298338	12298338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF136	NM_003437	exon4	c.A1145G	p.H382R	.	.	119	5	124	0	.	92
ZNF14	7561	bcgsc.ca	37	19	19823059	19823059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF14	NM_021030	exon4	c.T1031C	p.F344S	.	.	95	4	89	0	.	517
ZNF274	10782	broad.mit.edu	37	19	58718268	58718268	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF274	.	.	.	.	.	.	84	7	58	1	.	91
ZNF326	284695	bcgsc.ca	37	1	90472913	90472913	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF326	NM_182976	exon5	c.T219C	p.P73P	.	.	70	4	76	0	.	91
ZNF528	84436	bcgsc.ca	37	19	52909873	52909873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF528	NM_032423	exon6	c.A248G	p.E83G	.	.	159	5	154	0	.	92
ZNF566	84924	bcgsc.ca	37	19	36940813	36940813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF566	NM_001145343	exon5	c.T326C	p.L109P	.	.	254	6	191	2	.	90
ZNF568	374900	bcgsc.ca	37	19	37441449	37441449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF568	NM_198539	exon7	c.A1394G	p.Q465R	.	.	92	4	106	0	.	136
ZNF85	7639	bcgsc.ca	37	19	21132726	21132726	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ZNF85	NM_001256171	exon5	c.T1496A	p.L499H	.	.	75	4	58	0	.	514
